RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780660|ref|YP_003065073.1| hypothetical protein
CLIBASIA_02735 [Candidatus Liberibacter asiaticus str. psy62]
(244 letters)
>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains,
montreal-kingston bacterial structural genomics
initiative, BSGI, structural genomics; 2.20A
{Escherichia coli} (A:1-79)
Length = 79
Score = 115 bits (289), Expect = 7e-27
Identities = 33/73 (45%), Positives = 49/73 (67%)
Query: 1 MAGHSQFKNIMHRKERKDALKSKIFSKLSREITVSAKLSGQNPLENPRLRLAIQNAKNQS 60
MAGHS++ N HRK +DA + KIF+K+ RE+ +AKL G +P NPRLR A+ A + +
Sbjct: 4 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNN 63
Query: 61 MPKENIERAIKKA 73
M ++ + RAI +
Sbjct: 64 MTRDTLNRAIARG 76
>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability,
structural genomics, BSGC structure funded by NIH,
protein structure initiative, PSI; 1.72A {Aquifex
aeolicus} (A:1-78)
Length = 78
Score = 110 bits (276), Expect = 2e-25
Identities = 42/77 (54%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Query: 2 AGHSQFKNIMHRKERKDALKSKIFSKLSREITVSAKLSGQNPLENPRLRLAIQNAKNQSM 61
AGHS + I H+K + DA + K+FSKL REI V+ +L G NP NPRLR AI+ AK +
Sbjct: 2 AGHSHWAQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKANX 61
Query: 62 PKENIERAIKKA-GSDD 77
P ENIERAIKK G +
Sbjct: 62 PWENIERAIKKGAGELE 78
>1mw7_A Hypothetical protein HP0162; structural genomics, PSI,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.00A {Helicobacter pylori}
(A:1-73)
Length = 73
Score = 104 bits (261), Expect = 1e-23
Identities = 32/68 (47%), Positives = 45/68 (66%)
Query: 6 QFKNIMHRKERKDALKSKIFSKLSREITVSAKLSGQNPLENPRLRLAIQNAKNQSMPKEN 65
F+ KE++ SK+F KL++ IT++AK G P N +LR AI NAK Q+MPK+N
Sbjct: 4 AFEYRRAAKEKRWDKMSKVFPKLAKAITLAAKDGGSEPDTNAKLRTAILNAKAQNMPKDN 63
Query: 66 IERAIKKA 73
I+ AIK+A
Sbjct: 64 IDAAIKRA 71
>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains,
montreal-kingston bacterial structural genomics
initiative, BSGI, structural genomics; 2.20A
{Escherichia coli} (A:80-132,A:208-249)
Length = 95
Score = 91.6 bits (228), Expect = 9e-20
Identities = 30/55 (54%), Positives = 37/55 (67%)
Query: 76 DDLGNYTNIRYEGYGPEGVAIIIEALTDNRNRTASSIRSIFTKANGSLGSTGSTT 130
DD N I YEGYGP G AI+IE L+DNRNRT + +R F+K G+LG+ GS
Sbjct: 1 DDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSKA 55
Score = 51.2 bits (123), Expect = 1e-07
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 210 NADKVKSIIKMIENLEDDDDVQSVYSNLEIADDII 244
+A+ ++++I+ LED DDVQ VY N EI+D++
Sbjct: 58 DAETAPKLMRLIDMLEDCDDVQEVYHNGEISDEVA 92
>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability,
structural genomics, BSGC structure funded by NIH,
protein structure initiative, PSI; 1.72A {Aquifex
aeolicus} (A:79-129,A:206-249)
Length = 95
Score = 89.7 bits (223), Expect = 3e-19
Identities = 26/51 (50%), Positives = 35/51 (68%)
Query: 80 NYTNIRYEGYGPEGVAIIIEALTDNRNRTASSIRSIFTKANGSLGSTGSTT 130
+ + YEGY P GVA+ + A TDNRNRT S +R +FTK G+LG++G T
Sbjct: 3 QFEEVIYEGYAPGGVAVXVLATTDNRNRTTSEVRHVFTKHGGNLGASGCTV 53
Score = 51.9 bits (125), Expect = 7e-08
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 210 NADKVKSIIKMIENLEDDDDVQSVYSNLEIADDII 244
+ + + +IK++ LE+ DDVQ V +N EI ++I+
Sbjct: 57 DEETAQKVIKLLNALEELDDVQQVIANFEIPEEIL 91
>1mw7_A Hypothetical protein HP0162; structural genomics, PSI,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.00A {Helicobacter pylori}
(A:74-126,A:210-240)
Length = 84
Score = 88.1 bits (219), Expect = 1e-18
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 80 NYTNIRYEGYGPEGVAIIIEALTDNRNRTASSIRSIFTKANGSLGSTGS 128
N + I YEG GV II+E +TDN RT ++++S F K G+
Sbjct: 4 NLSEITYEGKANFGVLIIMECMTDNPTRTIANLKSYFNKTQGASIVPNG 52
Score = 45.0 bits (107), Expect = 9e-06
Identities = 11/29 (37%), Positives = 23/29 (79%)
Query: 210 NADKVKSIIKMIENLEDDDDVQSVYSNLE 238
N ++++ K+++ +EDDDDV ++Y+N+E
Sbjct: 56 NDEQMELTEKLLDRIEDDDDVVALYTNIE 84
>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability,
structural genomics, BSGC structure funded by NIH,
protein structure initiative, PSI; 1.72A {Aquifex
aeolicus} (A:130-205)
Length = 76
Score = 58.1 bits (141), Expect = 1e-09
Identities = 17/72 (23%), Positives = 32/72 (44%)
Query: 133 FEQIGEIIYHSNIGDSNLAMEVAIESDAFEVLFEDQEYIFYCDFNNVGLTSKKLEEKIGE 192
FE+ G I + +E AIE A +V ++ +I Y + + LE+
Sbjct: 5 FERKGYIEVPAKEVSEEELLEKAIEVGAEDVQPGEEVHIIYTVPEELYEVKENLEKLGVP 64
Query: 193 AQSIKVIWKPLN 204
+ ++ WKP++
Sbjct: 65 IEKAQITWKPIS 76
>1mw7_A Hypothetical protein HP0162; structural genomics, PSI,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.00A {Helicobacter pylori}
(A:127-209)
Length = 83
Score = 55.1 bits (133), Expect = 7e-09
Identities = 10/79 (12%), Positives = 22/79 (27%), Gaps = 5/79 (6%)
Query: 133 FEQIGEIIYHSNIGDSN-----LAMEVAIESDAFEVLFEDQEYIFYCDFNNVGLTSKKLE 187
F + N ++ I+ E+ + + I D+N+ L ++ E
Sbjct: 5 FNRKSVFECLKNEVENLKLSLEDLEFALIDYGLEELEEVEDKIIIRGDYNSFKLLNEGFE 64
Query: 188 EKIGEAQSIKVIWKPLNYI 206
+ I
Sbjct: 65 SLKLPILKASLQRIATTPI 83
>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains,
montreal-kingston bacterial structural genomics
initiative, BSGI, structural genomics; 2.20A
{Escherichia coli} (A:133-207)
Length = 75
Score = 49.6 bits (119), Expect = 4e-07
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 133 FEQIGEIIYHSNIGDSNLAMEVAIESDAFEV-LFEDQEYIFYCDFNNVGLTSKKLEEKIG 191
F + G I + D+ ME A+E+ A +V ++D Y + +G LE
Sbjct: 5 FSKKGVISFEKGDEDT--IMEAALEAGAEDVVTYDDGAIDVYTAWEEMGKVRDALEAAGL 62
Query: 192 EAQSIKVIWKPLN 204
+A S +V P
Sbjct: 63 KADSAEVSMIPST 75
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
Length = 120
Score = 34.4 bits (79), Expect = 0.016
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
Query: 133 FEQIGEIIYHSNIGDSNLAMEVAIESD 159
E + E++++ G + M+VA+ D
Sbjct: 8 IESLVEVVFYR--G---MTMQVAVPRD 29
>1vrm_A Hypothetical protein TM1553; structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative, PSI; HET: UNL; 1.58A {Thermotoga maritima
MSB8} (A:1-62,A:161-325)
Length = 227
Score = 27.2 bits (60), Expect = 2.1
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 11/91 (12%)
Query: 52 AIQNAKNQSMPKENIERAIKKAGSDDLGNYTNIRYEGYGPEGVAIIIEALTDNRNRTASS 111
A+ A+ ++ + +AG D +R G +I + D R
Sbjct: 72 ALDRARQIALSFDENATGFVEAGGD-------VRIIGPKFGKYPWVI-GVKDPRGDDVID 123
Query: 112 IRSIFTKANGSLGSTGSTTRFFEQIGEIIYH 142
+ +G++ ++G R+F G +H
Sbjct: 124 YIYL---KSGAVATSGDYERYFVVDGVRYHH 151
>1jbq_A Cystathionine beta-synthase, serine sulfhydrase; fold type
II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo
sapiens} (A:1-137,A:246-403)
Length = 295
Score = 25.8 bits (56), Expect = 4.8
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 22 SKIFSKLSREITVSAKLSGQNPLENPRLRLAIQ 54
+KI K + + AK N N LA
Sbjct: 115 NKIGKKFGLKCELLAKCEFFNAGRNASNPLAHY 147
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor,
isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans}
PDB: 3hdy_A* 3he3_A* (A:1-108,A:209-265,A:339-397)
Length = 224
Score = 25.7 bits (56), Expect = 5.4
Identities = 4/43 (9%), Positives = 14/43 (32%)
Query: 64 ENIERAIKKAGSDDLGNYTNIRYEGYGPEGVAIIIEALTDNRN 106
+++ + + Y Y+ G + + + + N
Sbjct: 92 KDVFEYLSRFTEWRPYQYFADTYQAMPLHGYTRMFQNMLSSPN 134
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN;
1.80A {Homo sapiens} (A:178-336)
Length = 159
Score = 25.4 bits (55), Expect = 6.6
Identities = 7/42 (16%), Positives = 14/42 (33%)
Query: 137 GEIIYHSNIGDSNLAMEVAIESDAFEVLFEDQEYIFYCDFNN 178
G N G + L + A++ +VL+ +
Sbjct: 22 GNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGT 63
>2frn_A Hypothetical protein PH0793; structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; 2.10A {Pyrococcus horikoshii
OT3} (A:)
Length = 278
Score = 25.3 bits (54), Expect = 6.9
Identities = 9/54 (16%), Positives = 18/54 (33%)
Query: 63 KENIERAIKKAGSDDLGNYTNIRYEGYGPEGVAIIIEALTDNRNRTASSIRSIF 116
K I + K ++L R+ G + + L ++R A +
Sbjct: 7 KPRIREILSKELPEELVKLLPKRWVRIGDVLLLPLRPELEPYKHRIAEVYAEVL 60
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1,
structural genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.50A {Bacteroides
thetaiotaomicron vpi-5482} (A:1-170,A:271-347,A:458-478)
Length = 268
Score = 25.0 bits (54), Expect = 8.7
Identities = 9/168 (5%), Positives = 34/168 (20%), Gaps = 29/168 (17%)
Query: 79 GNYTNIRYEGYGPEGVAIIIEALTDNRNRTASSIRSIFTKANGSLGST-GSTTRFFEQIG 137
G Y R I + + S + + + +
Sbjct: 20 GVYGLTRAALADNNTHWICGDLRKGDFTVYKRSDLQAVSDNELNKPYDLLKKVSNWRRFY 79
Query: 138 EIIYHSNIGDSNLAMEVAIESDAFEVLFEDQEYIFYCDFNNVGLTSKKLEEKIGEAQSIK 197
+I +++ + + + L+ I + +
Sbjct: 80 AVINAASVFXEKAPR---------------------TVELDRSYSEQNLKYDIAQVR--- 115
Query: 198 VIWKPLNYIRLSNADKVKSIIKMIENLEDDDDVQSVYSNL-EIADDII 244
+ Y + + + ++ ++ +
Sbjct: 116 -ALRAFAYFY--XVRIWGDVPLVTYSYDNGTFPSXPRTDAQTVLSYAK 160
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A
{Arabidopsis thaliana} (A:1-42,A:149-302)
Length = 196
Score = 25.0 bits (54), Expect = 9.7
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 26 SKLSREI--TVSAKLSGQNPLENPRLRLAIQ 54
+ ++ V+AKL P ENP
Sbjct: 22 NNVAEGCVGRVAAKLEMMEPCENPANPKIHY 52
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.314 0.132 0.357
Gapped
Lambda K H
0.267 0.0546 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,703,540
Number of extensions: 73391
Number of successful extensions: 210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 32
Length of query: 244
Length of database: 4,956,049
Length adjustment: 86
Effective length of query: 158
Effective length of database: 2,048,819
Effective search space: 323713402
Effective search space used: 323713402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.6 bits)