RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780660|ref|YP_003065073.1| hypothetical protein
CLIBASIA_02735 [Candidatus Liberibacter asiaticus str. psy62]
         (244 letters)



>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural
           genomics, BSGC structure funded by NIH, protein
           structure initiative, PSI; 1.72A {Aquifex aeolicus}
           SCOP: e.39.1.1
          Length = 249

 Score =  270 bits (691), Expect = 2e-73
 Identities = 99/245 (40%), Positives = 150/245 (61%), Gaps = 1/245 (0%)

Query: 1   MAGHSQFKNIMHRKERKDALKSKIFSKLSREITVSAKLSGQNPLENPRLRLAIQNAKNQS 60
           MAGHS +  I H+K + DA + K+FSKL REI V+ +L G NP  NPRLR AI+ AK  +
Sbjct: 1   MAGHSHWAQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKAN 60

Query: 61  MPKENIERAIKKAGSDDLG-NYTNIRYEGYGPEGVAIIIEALTDNRNRTASSIRSIFTKA 119
           MP ENIERAIKK   +  G  +  + YEGY P GVA+++ A TDNRNRT S +R +FTK 
Sbjct: 61  MPWENIERAIKKGAGELEGEQFEEVIYEGYAPGGVAVMVLATTDNRNRTTSEVRHVFTKH 120

Query: 120 NGSLGSTGSTTRFFEQIGEIIYHSNIGDSNLAMEVAIESDAFEVLFEDQEYIFYCDFNNV 179
            G+LG++G  +  FE+ G I   +        +E AIE  A +V   ++ +I Y     +
Sbjct: 121 GGNLGASGCVSYLFERKGYIEVPAKEVSEEELLEKAIEVGAEDVQPGEEVHIIYTVPEEL 180

Query: 180 GLTSKKLEEKIGEAQSIKVIWKPLNYIRLSNADKVKSIIKMIENLEDDDDVQSVYSNLEI 239
               + LE+     +  ++ WKP++ +++++ +  + +IK++  LE+ DDVQ V +N EI
Sbjct: 181 YEVKENLEKLGVPIEKAQITWKPISTVQINDEETAQKVIKLLNALEELDDVQQVIANFEI 240

Query: 240 ADDII 244
            ++I+
Sbjct: 241 PEEIL 245


>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston
           bacterial structural genomics initiative, BSGI,
           structural genomics; 2.20A {Escherichia coli} SCOP:
           e.39.1.1
          Length = 249

 Score =  262 bits (672), Expect = 4e-71
 Identities = 99/246 (40%), Positives = 143/246 (58%), Gaps = 5/246 (2%)

Query: 1   MAGHSQFKNIMHRKERKDALKSKIFSKLSREITVSAKLSGQNPLENPRLRLAIQNAKNQS 60
           MAGHS++ N  HRK  +DA + KIF+K+ RE+  +AKL G +P  NPRLR A+  A + +
Sbjct: 4   MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNN 63

Query: 61  MPKENIERAIKKA-GSDDLGNYTNIRYEGYGPEGVAIIIEALTDNRNRTASSIRSIFTKA 119
           M ++ + RAI +  G DD  N   I YEGYGP G AI+IE L+DNRNRT + +R  F+K 
Sbjct: 64  MTRDTLNRAIARGVGGDDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKC 123

Query: 120 NGSLGSTGSTTRFFEQIGEIIYHSNIGDSNLAMEVAIESDAFEVLFEDQE-YIFYCDFNN 178
            G+LG+ GS    F + G I +    GD +  ME A+E+ A +V+  D      Y  +  
Sbjct: 124 GGNLGTDGSVAYLFSKKGVISF--EKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWEE 181

Query: 179 VGLTSKKLEEKIGEAQSIKVIWKPLNYIRLSNADKVKSIIKMIENLEDDDDVQSVYSNLE 238
           +G     LE    +A S +V   P     +  A+    ++++I+ LED DDVQ VY N E
Sbjct: 182 MGKVRDALEAAGLKADSAEVSMIPSTKADMD-AETAPKLMRLIDMLEDCDDVQEVYHNGE 240

Query: 239 IADDII 244
           I+D++ 
Sbjct: 241 ISDEVA 246


>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein
           structure initiative, northeast structural genomics
           consortium, NESG; 2.00A {Helicobacter pylori} SCOP:
           e.39.1.1
          Length = 240

 Score =  234 bits (599), Expect = 1e-62
 Identities = 78/238 (32%), Positives = 124/238 (52%), Gaps = 8/238 (3%)

Query: 7   FKNIMHRKERKDALKSKIFSKLSREITVSAKLSGQNPLENPRLRLAIQNAKNQSMPKENI 66
           F+     KE++    SK+F KL++ IT++AK  G  P  N +LR AI NAK Q+MPK+NI
Sbjct: 5   FEYRRAAKEKRWDKMSKVFPKLAKAITLAAKDGGSEPDTNAKLRTAILNAKAQNMPKDNI 64

Query: 67  ERAIKKAGSDDLGNYTNIRYEGYGPEGVAIIIEALTDNRNRTASSIRSIFTKANG-SLGS 125
           + AIK+A S + GN + I YEG    GV II+E +TDN  RT ++++S F K  G S+  
Sbjct: 65  DAAIKRASSKE-GNLSEITYEGKANFGVLIIMECMTDNPTRTIANLKSYFNKTQGASIVP 123

Query: 126 TGSTTRFFEQIGEIIYHSNIGDSNLAME-----VAIESDAFEVLFEDQEYIFYCDFNNVG 180
            GS    F +        N  ++            I+    E+   + + I   D+N+  
Sbjct: 124 NGSLEFMFNRKSVFECLKNEVENLKLSLEDLEFALIDYGLEELEEVEDKIIIRGDYNSFK 183

Query: 181 LTSKKLEEKIGEAQSIKVIWKPLNYIRLSNADKVKSIIKMIENLEDDDDVQSVYSNLE 238
           L ++  E          +       I L N ++++   K+++ +EDDDDV ++Y+N+E
Sbjct: 184 LLNEGFESLKLPILKASLQRIATTPIEL-NDEQMELTEKLLDRIEDDDDVVALYTNIE 240


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 34/247 (13%), Positives = 71/247 (28%), Gaps = 93/247 (37%)

Query: 10  IMHRKERKDA------LKS--KIF-SKL--SREI-TVSAKLSGQNPLENPRLRLAIQNAK 57
           +    E          L      F +      +I  ++AKL  +N     + +  I+N  
Sbjct: 68  VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127

Query: 58  NQSMPKENIERAIKKAGSDDLGNYTNIRYEGYGPEGVAIIIEALTDNRNRTASSIRSIFT 117
                      A   A       +             + +  A+ +      + + +IF 
Sbjct: 128 ----------TARIMAKR----PFDKKS--------NSALFRAVGEGN----AQLVAIF- 160

Query: 118 KANGSLGSTGSTTRFFEQIGEI--IYHSNIGD-----SNLAMEVAIESDAFEVLF----- 165
                 G  G+T  +FE++ ++   YH  +GD     +    E+   +   E +F     
Sbjct: 161 ------GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214

Query: 166 --------E---DQEYI-----------------FY--CDFNNVGLTSKKLEEKI----G 191
                       D++Y+                 +        +G T  +L   +    G
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA--KLLGFTPGELRSYLKGATG 272

Query: 192 EAQSIKV 198
            +Q +  
Sbjct: 273 HSQGLVT 279



 Score = 33.4 bits (76), Expect = 0.043
 Identities = 30/136 (22%), Positives = 52/136 (38%), Gaps = 35/136 (25%)

Query: 117  TKANGSLGSTGSTTRF-----FEQIGEIIYH-----------SNIGDSNLAMEVAIESDA 160
            T A  SLG   +          E + E++++             +G SN  M +AI    
Sbjct: 1758 TFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM-IAINPGR 1816

Query: 161  FEVLFEDQEYIFYCDFNNVGLTSKKLEEKI------------GEAQSIKVIWKPLNYIRL 208
                F  QE + Y     VG  +  L E +            G+ +++  +   LN+I+L
Sbjct: 1817 VAASFS-QEALQYV-VERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKL 1874

Query: 209  SNADKVKSIIKMIENL 224
               D    II++ ++L
Sbjct: 1875 QKID----IIELQKSL 1886



 Score = 33.4 bits (76), Expect = 0.045
 Identities = 46/285 (16%), Positives = 85/285 (29%), Gaps = 135/285 (47%)

Query: 1   MAGHSQ-----------------FKNIMHRKERKDALKSKIFSKLSR------EITVSAK 37
             GHSQ                 F ++      + A+   +F    R        ++   
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSV------RKAITV-LFFIGVRCYEAYPNTSLPPS 322

Query: 38  LSGQNPLEN----PRLRLAIQNAKNQSMPKENIERAIKKAGSDDLGNYTNIRYEGYGPEG 93
           +  ++ LEN    P   L+I N     + +E ++  + K         TN     + P G
Sbjct: 323 IL-EDSLENNEGVPSPMLSISN-----LTQEQVQDYVNK---------TN----SHLPAG 363

Query: 94  VAIIIEALTDN--RN-----------RTASSIRSIFTKANGSLGSTGS------------ 128
             + I +L  N  +N               ++R    KA      +G             
Sbjct: 364 KQVEI-SLV-NGAKNLVVSGPPQSLYGLNLTLRKA--KA-----PSGLDQSRIPFSERKL 414

Query: 129 --TTRFFEQIGEII---YHSNIGDSNLAMEVAIESDAFEVLFEDQEYIFYCDFNNVGLTS 183
             + RF       +   +HS      L         A +++ +D         NNV   +
Sbjct: 415 KFSNRFLP-----VASPFHS----HLLV-------PASDLINKDLV------KNNVSFNA 452

Query: 184 KKLEEKIGEAQSIKVIWKPLNY-------IRLSNADKVKSIIKMI 221
           K +  +I           P+ Y       +R+ +    + I+  I
Sbjct: 453 KDI--QI-----------PV-YDTFDGSDLRVLSGSISERIVDCI 483



 Score = 30.3 bits (68), Expect = 0.43
 Identities = 20/138 (14%), Positives = 39/138 (28%), Gaps = 51/138 (36%)

Query: 4   HSQFKNIM---HRKERKDALKSKIFSKLSRE-ITVSAKLSGQNPLENPRLRLAI-----Q 54
            ++F  +    H      A    I   L +  ++ +AK             + I      
Sbjct: 417 SNRFLPVASPFHSHLLVPA-SDLINKDLVKNNVSFNAK------------DIQIPVYDTF 463

Query: 55  NAKNQSMPKENIE----RAI-------KKA--------------GSDDLGNYTNIRYEGY 89
           +  +  +   +I       I       +                G+  LG  T+   +G 
Sbjct: 464 DGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT 523

Query: 90  GPEGVAIIIE-ALTDNRN 106
              GV +I+   L  N +
Sbjct: 524 ---GVRVIVAGTLDINPD 538


>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA
           C-terminal domain, DNA wrapping, beta-strand-bearing
           proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas
           campestris PV}
          Length = 370

 Score = 28.2 bits (62), Expect = 1.6
 Identities = 9/25 (36%), Positives = 19/25 (76%)

Query: 206 IRLSNADKVKSIIKMIENLEDDDDV 230
           IRLS  +K++++ ++  +LE+ +DV
Sbjct: 330 IRLSKGEKLQAVERLDASLEEPEDV 354


>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics,
           center for structural genomics of infec diseases, csgid;
           HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A*
          Length = 437

 Score = 27.9 bits (61), Expect = 2.0
 Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 14/82 (17%)

Query: 4   HSQFKNIMHRKERKDALK-SKIFSKLSREITVSAKLSGQNPLENPR------LRLAIQNA 56
             + + ++     KD        S+   E   +       PLE PR      L   + +A
Sbjct: 344 QGKVRAVVGMLSDKDIAGTLACLSERVDEWYCA-------PLEGPRGASAGQLAEHLVSA 396

Query: 57  KNQSMPKENIERAIKKAGSDDL 78
           +  S  +    +A++ A + D+
Sbjct: 397 RQFSDVETAWRQAMQDADTQDV 418


>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase,
           ATP-binding, folate biosynthesis, ligase,
           multifunctional enzyme; HET: KCX PD8 ADP; 1.82A
           {Escherichia coli} PDB: 1w7k_A*
          Length = 422

 Score = 27.4 bits (59), Expect = 3.0
 Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 14/84 (16%)

Query: 1   MAGHSQFKNIMHRKERKDALKSKIFSKLSREITVSAKLSGQNPLENPR------LRLAIQ 54
             G       M   +      + + S +              PLE PR      L   + 
Sbjct: 322 KNGRVLAVIGMLHDKDIAGTLAWLKSVVDDWYCA--------PLEGPRGATAEQLLEHLG 373

Query: 55  NAKNQSMPKENIERAIKKAGSDDL 78
           N K+     +  + A+  A ++D 
Sbjct: 374 NGKSFDSVAQAWDAAMADAKAEDT 397


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.314    0.132    0.357 

Gapped
Lambda     K      H
   0.267   0.0473    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,995,166
Number of extensions: 91002
Number of successful extensions: 236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 22
Length of query: 244
Length of database: 5,693,230
Length adjustment: 90
Effective length of query: 154
Effective length of database: 3,511,270
Effective search space: 540735580
Effective search space used: 540735580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.6 bits)