RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780660|ref|YP_003065073.1| hypothetical protein CLIBASIA_02735 [Candidatus Liberibacter asiaticus str. psy62] (244 letters) >1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1 Length = 249 Score = 270 bits (691), Expect = 2e-73 Identities = 99/245 (40%), Positives = 150/245 (61%), Gaps = 1/245 (0%) Query: 1 MAGHSQFKNIMHRKERKDALKSKIFSKLSREITVSAKLSGQNPLENPRLRLAIQNAKNQS 60 MAGHS + I H+K + DA + K+FSKL REI V+ +L G NP NPRLR AI+ AK + Sbjct: 1 MAGHSHWAQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKAN 60 Query: 61 MPKENIERAIKKAGSDDLG-NYTNIRYEGYGPEGVAIIIEALTDNRNRTASSIRSIFTKA 119 MP ENIERAIKK + G + + YEGY P GVA+++ A TDNRNRT S +R +FTK Sbjct: 61 MPWENIERAIKKGAGELEGEQFEEVIYEGYAPGGVAVMVLATTDNRNRTTSEVRHVFTKH 120 Query: 120 NGSLGSTGSTTRFFEQIGEIIYHSNIGDSNLAMEVAIESDAFEVLFEDQEYIFYCDFNNV 179 G+LG++G + FE+ G I + +E AIE A +V ++ +I Y + Sbjct: 121 GGNLGASGCVSYLFERKGYIEVPAKEVSEEELLEKAIEVGAEDVQPGEEVHIIYTVPEEL 180 Query: 180 GLTSKKLEEKIGEAQSIKVIWKPLNYIRLSNADKVKSIIKMIENLEDDDDVQSVYSNLEI 239 + LE+ + ++ WKP++ +++++ + + +IK++ LE+ DDVQ V +N EI Sbjct: 181 YEVKENLEKLGVPIEKAQITWKPISTVQINDEETAQKVIKLLNALEELDDVQQVIANFEI 240 Query: 240 ADDII 244 ++I+ Sbjct: 241 PEEIL 245 >1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} SCOP: e.39.1.1 Length = 249 Score = 262 bits (672), Expect = 4e-71 Identities = 99/246 (40%), Positives = 143/246 (58%), Gaps = 5/246 (2%) Query: 1 MAGHSQFKNIMHRKERKDALKSKIFSKLSREITVSAKLSGQNPLENPRLRLAIQNAKNQS 60 MAGHS++ N HRK +DA + KIF+K+ RE+ +AKL G +P NPRLR A+ A + + Sbjct: 4 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNN 63 Query: 61 MPKENIERAIKKA-GSDDLGNYTNIRYEGYGPEGVAIIIEALTDNRNRTASSIRSIFTKA 119 M ++ + RAI + G DD N I YEGYGP G AI+IE L+DNRNRT + +R F+K Sbjct: 64 MTRDTLNRAIARGVGGDDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKC 123 Query: 120 NGSLGSTGSTTRFFEQIGEIIYHSNIGDSNLAMEVAIESDAFEVLFEDQE-YIFYCDFNN 178 G+LG+ GS F + G I + GD + ME A+E+ A +V+ D Y + Sbjct: 124 GGNLGTDGSVAYLFSKKGVISF--EKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWEE 181 Query: 179 VGLTSKKLEEKIGEAQSIKVIWKPLNYIRLSNADKVKSIIKMIENLEDDDDVQSVYSNLE 238 +G LE +A S +V P + A+ ++++I+ LED DDVQ VY N E Sbjct: 182 MGKVRDALEAAGLKADSAEVSMIPSTKADMD-AETAPKLMRLIDMLEDCDDVQEVYHNGE 240 Query: 239 IADDII 244 I+D++ Sbjct: 241 ISDEVA 246 >1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} SCOP: e.39.1.1 Length = 240 Score = 234 bits (599), Expect = 1e-62 Identities = 78/238 (32%), Positives = 124/238 (52%), Gaps = 8/238 (3%) Query: 7 FKNIMHRKERKDALKSKIFSKLSREITVSAKLSGQNPLENPRLRLAIQNAKNQSMPKENI 66 F+ KE++ SK+F KL++ IT++AK G P N +LR AI NAK Q+MPK+NI Sbjct: 5 FEYRRAAKEKRWDKMSKVFPKLAKAITLAAKDGGSEPDTNAKLRTAILNAKAQNMPKDNI 64 Query: 67 ERAIKKAGSDDLGNYTNIRYEGYGPEGVAIIIEALTDNRNRTASSIRSIFTKANG-SLGS 125 + AIK+A S + GN + I YEG GV II+E +TDN RT ++++S F K G S+ Sbjct: 65 DAAIKRASSKE-GNLSEITYEGKANFGVLIIMECMTDNPTRTIANLKSYFNKTQGASIVP 123 Query: 126 TGSTTRFFEQIGEIIYHSNIGDSNLAME-----VAIESDAFEVLFEDQEYIFYCDFNNVG 180 GS F + N ++ I+ E+ + + I D+N+ Sbjct: 124 NGSLEFMFNRKSVFECLKNEVENLKLSLEDLEFALIDYGLEELEEVEDKIIIRGDYNSFK 183 Query: 181 LTSKKLEEKIGEAQSIKVIWKPLNYIRLSNADKVKSIIKMIENLEDDDDVQSVYSNLE 238 L ++ E + I L N ++++ K+++ +EDDDDV ++Y+N+E Sbjct: 184 LLNEGFESLKLPILKASLQRIATTPIEL-NDEQMELTEKLLDRIEDDDDVVALYTNIE 240 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 44.2 bits (104), Expect = 3e-05 Identities = 34/247 (13%), Positives = 71/247 (28%), Gaps = 93/247 (37%) Query: 10 IMHRKERKDA------LKS--KIF-SKL--SREI-TVSAKLSGQNPLENPRLRLAIQNAK 57 + E L F + +I ++AKL +N + + I+N Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127 Query: 58 NQSMPKENIERAIKKAGSDDLGNYTNIRYEGYGPEGVAIIIEALTDNRNRTASSIRSIFT 117 A A + + + A+ + + + +IF Sbjct: 128 ----------TARIMAKR----PFDKKS--------NSALFRAVGEGN----AQLVAIF- 160 Query: 118 KANGSLGSTGSTTRFFEQIGEI--IYHSNIGD-----SNLAMEVAIESDAFEVLF----- 165 G G+T +FE++ ++ YH +GD + E+ + E +F Sbjct: 161 ------GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214 Query: 166 --------E---DQEYI-----------------FY--CDFNNVGLTSKKLEEKI----G 191 D++Y+ + +G T +L + G Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA--KLLGFTPGELRSYLKGATG 272 Query: 192 EAQSIKV 198 +Q + Sbjct: 273 HSQGLVT 279 Score = 33.4 bits (76), Expect = 0.043 Identities = 30/136 (22%), Positives = 52/136 (38%), Gaps = 35/136 (25%) Query: 117 TKANGSLGSTGSTTRF-----FEQIGEIIYH-----------SNIGDSNLAMEVAIESDA 160 T A SLG + E + E++++ +G SN M +AI Sbjct: 1758 TFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM-IAINPGR 1816 Query: 161 FEVLFEDQEYIFYCDFNNVGLTSKKLEEKI------------GEAQSIKVIWKPLNYIRL 208 F QE + Y VG + L E + G+ +++ + LN+I+L Sbjct: 1817 VAASFS-QEALQYV-VERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKL 1874 Query: 209 SNADKVKSIIKMIENL 224 D II++ ++L Sbjct: 1875 QKID----IIELQKSL 1886 Score = 33.4 bits (76), Expect = 0.045 Identities = 46/285 (16%), Positives = 85/285 (29%), Gaps = 135/285 (47%) Query: 1 MAGHSQ-----------------FKNIMHRKERKDALKSKIFSKLSR------EITVSAK 37 GHSQ F ++ + A+ +F R ++ Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSV------RKAITV-LFFIGVRCYEAYPNTSLPPS 322 Query: 38 LSGQNPLEN----PRLRLAIQNAKNQSMPKENIERAIKKAGSDDLGNYTNIRYEGYGPEG 93 + ++ LEN P L+I N + +E ++ + K TN + P G Sbjct: 323 IL-EDSLENNEGVPSPMLSISN-----LTQEQVQDYVNK---------TN----SHLPAG 363 Query: 94 VAIIIEALTDN--RN-----------RTASSIRSIFTKANGSLGSTGS------------ 128 + I +L N +N ++R KA +G Sbjct: 364 KQVEI-SLV-NGAKNLVVSGPPQSLYGLNLTLRKA--KA-----PSGLDQSRIPFSERKL 414 Query: 129 --TTRFFEQIGEII---YHSNIGDSNLAMEVAIESDAFEVLFEDQEYIFYCDFNNVGLTS 183 + RF + +HS L A +++ +D NNV + Sbjct: 415 KFSNRFLP-----VASPFHS----HLLV-------PASDLINKDLV------KNNVSFNA 452 Query: 184 KKLEEKIGEAQSIKVIWKPLNY-------IRLSNADKVKSIIKMI 221 K + +I P+ Y +R+ + + I+ I Sbjct: 453 KDI--QI-----------PV-YDTFDGSDLRVLSGSISERIVDCI 483 Score = 30.3 bits (68), Expect = 0.43 Identities = 20/138 (14%), Positives = 39/138 (28%), Gaps = 51/138 (36%) Query: 4 HSQFKNIM---HRKERKDALKSKIFSKLSRE-ITVSAKLSGQNPLENPRLRLAI-----Q 54 ++F + H A I L + ++ +AK + I Sbjct: 417 SNRFLPVASPFHSHLLVPA-SDLINKDLVKNNVSFNAK------------DIQIPVYDTF 463 Query: 55 NAKNQSMPKENIE----RAI-------KKA--------------GSDDLGNYTNIRYEGY 89 + + + +I I + G+ LG T+ +G Sbjct: 464 DGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT 523 Query: 90 GPEGVAIIIE-ALTDNRN 106 GV +I+ L N + Sbjct: 524 ---GVRVIVAGTLDINPD 538 >3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV} Length = 370 Score = 28.2 bits (62), Expect = 1.6 Identities = 9/25 (36%), Positives = 19/25 (76%) Query: 206 IRLSNADKVKSIIKMIENLEDDDDV 230 IRLS +K++++ ++ +LE+ +DV Sbjct: 330 IRLSKGEKLQAVERLDASLEEPEDV 354 >3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* Length = 437 Score = 27.9 bits (61), Expect = 2.0 Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 14/82 (17%) Query: 4 HSQFKNIMHRKERKDALK-SKIFSKLSREITVSAKLSGQNPLENPR------LRLAIQNA 56 + + ++ KD S+ E + PLE PR L + +A Sbjct: 344 QGKVRAVVGMLSDKDIAGTLACLSERVDEWYCA-------PLEGPRGASAGQLAEHLVSA 396 Query: 57 KNQSMPKENIERAIKKAGSDDL 78 + S + +A++ A + D+ Sbjct: 397 RQFSDVETAWRQAMQDADTQDV 418 >1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A* Length = 422 Score = 27.4 bits (59), Expect = 3.0 Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 14/84 (16%) Query: 1 MAGHSQFKNIMHRKERKDALKSKIFSKLSREITVSAKLSGQNPLENPR------LRLAIQ 54 G M + + + S + PLE PR L + Sbjct: 322 KNGRVLAVIGMLHDKDIAGTLAWLKSVVDDWYCA--------PLEGPRGATAEQLLEHLG 373 Query: 55 NAKNQSMPKENIERAIKKAGSDDL 78 N K+ + + A+ A ++D Sbjct: 374 NGKSFDSVAQAWDAAMADAKAEDT 397 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.314 0.132 0.357 Gapped Lambda K H 0.267 0.0473 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,995,166 Number of extensions: 91002 Number of successful extensions: 236 Number of sequences better than 10.0: 1 Number of HSP's gapped: 225 Number of HSP's successfully gapped: 22 Length of query: 244 Length of database: 5,693,230 Length adjustment: 90 Effective length of query: 154 Effective length of database: 3,511,270 Effective search space: 540735580 Effective search space used: 540735580 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 55 (25.6 bits)