HHsearch alignment for GI: 254780661 and conserved domain: COG0417
>COG0417 PolB DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair].
Probab=96.67 E-value=0.046 Score=31.98 Aligned_cols=155 Identities=19% Similarity=0.104 Sum_probs=89.7
Q ss_pred CEEEEECCCCCCC-----CCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHH
Q ss_conf 3799975278898-----77260489999998389728040022662178887785789898579988996079997999
Q gi|254780661|r 4 HFVIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEF 78 (471)
Q Consensus 4 ~~v~~D~ETtG~~-----~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~ 78 (471)
T Consensus 155 ~~la~DiE~~~~~~~~~~~~~d~~~~i~~~~~-~~~~~~~~~---~~~~~~~------~~---------v~~-~~~e~e~ 214 (792)
T COG0417 155 RVLAFDIETLSEPGKFPDGEKDPIIMISYAIE-AEGGLIEVF---IYTSGEG------FS---------VEV-VISEAEL 214 (792)
T ss_pred CEEEEEEEECCCCCCCCCCCCCCEEEEEEEEC-CCCCCCCCC---CCCCCCC------CC---------EEE-ECCHHHH
T ss_conf 54799503105777889877786269999704-677764443---2235677------63---------487-2587999
Q ss_pred HHHHHHHHHCCCC-EEEEEECHHHHHHHHHHHHHHHCCCCC-----------C--CCCCCCCCCCCHHHHHHH-HHHHHH
Q ss_conf 9999999511796-599950557899999999985078532-----------1--325688710015888865-556532
Q gi|254780661|r 79 SRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSY-----------R--WSWDNGNSRWDLLDVMRA-IYAFSP 143 (471)
Q Consensus 79 ~~~i~~~~~~~~~-~~ig~N~~~FD~~~lr~~~~r~~~~~y-----------~--~~~~~~~~~~D~l~~~~~-~~~~~p 143 (471)
T Consensus 215 l~~~~~~i~~~dPdVIvgyn~~~fd~pyl~~Ra~~lgi~~~~gr~~~~~~~~~~~~~~~~Gr~~iDl~~~~~~~~----- 289 (792)
T COG0417 215 LERFVELIREYDPDVIVGYNGDNFDWPYLAERAERLGIPLRLGRDGSELRVRKSGFSSQVGRLHIDLYPALRRRP----- 289 (792)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCEEEEEHHHHHHHCC-----
T ss_conf 999999985029899998367777738999999981998511356653200212544557716741066542032-----
Q ss_pred HHCCCCCCCCCCCCCCHHHHHHHHCCCCCC----------------------CCHHHHHHHHHHHHHHHHH
Q ss_conf 100244444544331089899871887643----------------------1013331899999999998
Q gi|254780661|r 144 DGIQWPSRDDGATSFKLQDLALANGIEHVN----------------------AHDAKADVYATLALVWLIR 192 (471)
Q Consensus 144 ~~~~~~~~~~~~~~~kL~~la~~n~i~~~~----------------------aH~A~~D~~~t~~l~k~i~ 192 (471)
T Consensus 290 ---------~~~~~ysl~~v~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 351 (792)
T COG0417 290 ---------LNLKSYSLEAVSEALLGEGKREDIPYDSMEEIWPDWADSKLRLLLYNLSDADLVLRILLKNE 351 (792)
T ss_pred ---------CCCCCEEHHHHHHHHCCCCCHHCCCCCHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf ---------35563243467766413352200562013330423551076888834107889999986666