HHsearch alignment for GI: 254780661 and conserved domain: COG0417

>COG0417 PolB DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair].
Probab=96.67  E-value=0.046  Score=31.98  Aligned_cols=155  Identities=19%  Similarity=0.104  Sum_probs=89.7

Q ss_pred             CEEEEECCCCCCC-----CCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHH
Q ss_conf             3799975278898-----77260489999998389728040022662178887785789898579988996079997999
Q gi|254780661|r    4 HFVIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEF   78 (471)
Q Consensus         4 ~~v~~D~ETtG~~-----~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~   78 (471)
T Consensus       155 ~~la~DiE~~~~~~~~~~~~~d~~~~i~~~~~-~~~~~~~~~---~~~~~~~------~~---------v~~-~~~e~e~  214 (792)
T COG0417         155 RVLAFDIETLSEPGKFPDGEKDPIIMISYAIE-AEGGLIEVF---IYTSGEG------FS---------VEV-VISEAEL  214 (792)
T ss_pred             CEEEEEEEECCCCCCCCCCCCCCEEEEEEEEC-CCCCCCCCC---CCCCCCC------CC---------EEE-ECCHHHH
T ss_conf             54799503105777889877786269999704-677764443---2235677------63---------487-2587999


Q ss_pred             HHHHHHHHHCCCC-EEEEEECHHHHHHHHHHHHHHHCCCCC-----------C--CCCCCCCCCCCHHHHHHH-HHHHHH
Q ss_conf             9999999511796-599950557899999999985078532-----------1--325688710015888865-556532
Q gi|254780661|r   79 SRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSY-----------R--WSWDNGNSRWDLLDVMRA-IYAFSP  143 (471)
Q Consensus        79 ~~~i~~~~~~~~~-~~ig~N~~~FD~~~lr~~~~r~~~~~y-----------~--~~~~~~~~~~D~l~~~~~-~~~~~p  143 (471)
T Consensus       215 l~~~~~~i~~~dPdVIvgyn~~~fd~pyl~~Ra~~lgi~~~~gr~~~~~~~~~~~~~~~~Gr~~iDl~~~~~~~~-----  289 (792)
T COG0417         215 LERFVELIREYDPDVIVGYNGDNFDWPYLAERAERLGIPLRLGRDGSELRVRKSGFSSQVGRLHIDLYPALRRRP-----  289 (792)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCEEEEEHHHHHHHCC-----
T ss_conf             999999985029899998367777738999999981998511356653200212544557716741066542032-----


Q ss_pred             HHCCCCCCCCCCCCCCHHHHHHHHCCCCCC----------------------CCHHHHHHHHHHHHHHHHH
Q ss_conf             100244444544331089899871887643----------------------1013331899999999998
Q gi|254780661|r  144 DGIQWPSRDDGATSFKLQDLALANGIEHVN----------------------AHDAKADVYATLALVWLIR  192 (471)
Q Consensus       144 ~~~~~~~~~~~~~~~kL~~la~~n~i~~~~----------------------aH~A~~D~~~t~~l~k~i~  192 (471)
T Consensus       290 ---------~~~~~ysl~~v~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  351 (792)
T COG0417         290 ---------LNLKSYSLEAVSEALLGEGKREDIPYDSMEEIWPDWADSKLRLLLYNLSDADLVLRILLKNE  351 (792)
T ss_pred             ---------CCCCCEEHHHHHHHHCCCCCHHCCCCCHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             ---------35563243467766413352200562013330423551076888834107889999986666