HHsearch alignment for GI: 254780661 and conserved domain: COG0749
>COG0749 PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair].
Probab=95.79 E-value=0.14 Score=28.82 Aligned_cols=133 Identities=19% Similarity=0.182 Sum_probs=75.7
Q ss_pred EEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99975278898772604899999983897280400226621788877857898985799889960799979999999999
Q gi|254780661|r 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQF 85 (471)
Q Consensus 6 v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~i~~~ 85 (471)
T Consensus 25 ~a~~~et~~l~~~~~~lvg~s~~~~~---------~~~yi~~~~~--------------~~--------~~~~~~~l~~~ 73 (593)
T COG0749 25 IAFDTETDGLDPHGADLVGLSVASEE---------EAAYIPLLHG--------------PE--------QLNVLAALKPL 73 (593)
T ss_pred CCEECCCCCCCCCCCCEEEEEEECCC---------CCEEEEECCC--------------HH--------HHHHHHHHHHH
T ss_conf 10100014567555874678862365---------4236751366--------------55--------55148999998
Q ss_pred HHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf 51179659995055789999999998507853213256887100158888655565321002444445443310898998
Q gi|254780661|r 86 FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165 (471)
Q Consensus 86 ~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~~la~ 165 (471)
T Consensus 74 l~~~~~~kv~~~-~K~d~~~l~~----~Gi~--------~~~~~Dtmlas---Yll~~~----------~~~~~~~~l~~ 127 (593)
T COG0749 74 LEDEGIKKVGQN-LKYDYKVLAN----LGIE--------PGVAFDTMLAS---YLLNPG----------AGAHNLDDLAK 127 (593)
T ss_pred HHCCCCCHHCCC-CCHHHHHHHH----CCCC--------CCCHHHHHHHH---HCCCCC----------CCCCCHHHHHH
T ss_conf 637541032134-1366999997----3976--------56517899999---614867----------67577789999
Q ss_pred HHCCCCCC------------------------CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 71887643------------------------10133318999999999986422
Q gi|254780661|r 166 ANGIEHVN------------------------AHDAKADVYATLALVWLIREKKP 196 (471)
Q Consensus 166 ~n~i~~~~------------------------aH~A~~D~~~t~~l~k~i~~~~p 196 (471)
T Consensus 128 r~l-~~~~~~~~~i~~kg~~~~~~~~~~~~~~~~y~a~~a~~~~~L~~~l~~~l~ 181 (593)
T COG0749 128 RYL-GLETITFEDIAGKGKKQLTFADVKLEKATEYAAEDADATLRLESILEPELL 181 (593)
T ss_pred HHC-CCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 825-877402487632544567610014778888788888999999999998763