HHsearch alignment for GI: 254780661 and conserved domain: PRK05601

>PRK05601 DNA polymerase III subunit epsilon; Validated.
Probab=99.45  E-value=1.5e-12  Score=99.37  Aligned_cols=158  Identities=13%  Similarity=0.106  Sum_probs=124.3

Q ss_pred             CEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHHH
Q ss_conf             37999752788987726048999999838972804002266217888778578989857998899607999799999999
Q gi|254780661|r    4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIH   83 (471)
Q Consensus         4 ~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~i~   83 (471)
T Consensus        47 p~va~~~~ttgihpst~r~v~~da~~~da~Ge~~~~f~~~---lNPg~--DPGP~HiHGLT~e~L~gAP-~F~~ia~~l~  120 (377)
T PRK05601         47 PFVAVSIQSSGIHPSTSRMVTIDAVTLSADGEPVETFHAV---LNPKT--DPGPFHLHGVTEEEFASAK-RFGQILKSLD  120 (377)
T ss_pred             CEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCEEEEE---CCCCC--CCCCCCCCCCCHHHHCCCC-CHHHHHHHHH
T ss_conf             7279998855757775505888788864789722345771---27999--9998101378999970684-2899999999


Q ss_pred             HHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCC----------------------CCCCCCHHHHHHHHHHH
Q ss_conf             99511796599950557899999999985078532132568----------------------87100158888655565
Q gi|254780661|r   84 QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN----------------------GNSRWDLLDVMRAIYAF  141 (471)
Q Consensus        84 ~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~----------------------~~~~~D~l~~~~~~~~~  141 (471)
T Consensus       121 ~lLd--GRtLVaHN-a~fdw~Fia~Ea~RA~~~a~-~~~R~~~r~~~~~~r~rrrqr~gh~P~P~~iv~TLAlaRR~~--  194 (377)
T PRK05601        121 RLID--GRTLLLHN-APRTWGFIVSEAKRAMNDAA-RANRNRNRGNRRGGRGRRRQRVGHIPKPLVIVDTLASARRQA--  194 (377)
T ss_pred             HHHC--CCEEEEEC-CCCHHHHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCCCCHHCCCCCCCCCCEEEHHHHHHHCC--
T ss_conf             9845--86799835-60208899999998655423-443210013444444310100367788752100777776418--


Q ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf             3210024444454433108989987188764310133318999
Q gi|254780661|r  142 SPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT  184 (471)
Q Consensus       142 ~p~~~~~~~~~~~~~~~kL~~la~~n~i~~~~aH~A~~D~~~t  184 (471)
T Consensus       195 -----------l~~~d~RL~~vA~~~g~~a~~a~a~~~ra~~~  226 (377)
T PRK05601        195 -----------IALDDVRIRGVAHTLGLDAPAAEASVERAQVP  226 (377)
T ss_pred             -----------CCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCC
T ss_conf             -----------99874355666766088863013216563355