HHsearch alignment for GI: 254780661 and conserved domain: PRK06195
>PRK06195 DNA polymerase III subunit epsilon; Validated.
Probab=99.96 E-value=3.1e-28 Score=200.25 Aligned_cols=162 Identities=21% Similarity=0.243 Sum_probs=136.3
Q ss_pred CEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHHH
Q ss_conf 37999752788987726048999999838972804002266217888778578989857998899607999799999999
Q gi|254780661|r 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIH 83 (471)
Q Consensus 4 ~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~i~ 83 (471)
T Consensus 2 ~fvviD~ETt~--~~~d~iieIg~v~v-~~g~iv~~~~~-Li~P~~-~~~~p~~i~ihGIt~~~v~~aP-~f~ev~~~~~ 75 (309)
T PRK06195 2 DFVAIDFETAN--EKRNSPCSIGIVVV-KDGEIVEKVHY-LIKPKE-MRFMPINIGIHGIRPHMVQDEL-EFDKIWEKIK 75 (309)
T ss_pred CEEEEEEECCC--CCCCEEEEEEEEEE-ECCEEEEEEEE-EECCCC-CCCCCCEEEECCCCHHHHHCCC-CHHHHHHHHH
T ss_conf 29999978999--99980599999999-99999999999-989999-8888744640377999996599-9999999999
Q ss_pred HHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 99511796599950557899999999985078532132568871001588886555653210024444454433108989
Q gi|254780661|r 84 QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163 (471)
Q Consensus 84 ~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~~l 163 (471)
T Consensus 76 ~fi~--~~vlVaHN-a~FD~~fL~~~~~r~gl~~~------~~~~~cTl~LAR~~~-------------p~l~~~kL~~L 133 (309)
T PRK06195 76 DYFN--DNLVIAHN-ASFDISVLRKTLELYNIPMP------DFEYICTMKLAKNFY-------------SNIPNARLNTV 133 (309)
T ss_pred HHHC--CCEEEEEC-CHHHHHHHHHHHHHCCCCCC------CCCEEEHHHHHHHHC-------------CCCCCCCHHHH
T ss_conf 9857--99799956-28889999999998499999------997774799999865-------------57765788899
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9871887643101333189999999999864
Q gi|254780661|r 164 ALANGIEHVNAHDAKADVYATLALVWLIREK 194 (471)
Q Consensus 164 a~~n~i~~~~aH~A~~D~~~t~~l~k~i~~~ 194 (471)
T Consensus 134 a~~~gi~~-~hH~Al~DA~A~a~I~~~~~~~ 163 (309)
T PRK06195 134 NNFLGYEF-KHHDALEDAMACSNILLNISKE 163 (309)
T ss_pred HHHHCCCC-CCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99859880-1168510199999999999998