HHsearch alignment for GI: 254780661 and conserved domain: PRK06310
>PRK06310 DNA polymerase III subunit epsilon; Validated.
Probab=100.00 E-value=3.8e-33 Score=231.84 Aligned_cols=209 Identities=21% Similarity=0.186 Sum_probs=158.1
Q ss_pred CCEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHH
Q ss_conf 83799975278898772604899999983897280400226621788877857898985799889960799979999999
Q gi|254780661|r 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRI 82 (471)
Q Consensus 3 ~~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~i 82 (471)
T Consensus 7 ~~yvv~D~ETTGl~~~~DrIIEI~~vkv~~-~~i~~~~~~l-i--nP~~~I~~~~~~ihGIt~emV~d~P-~f~ev~~~~ 81 (250)
T PRK06310 7 TEFVCLDCETTGLDVKKDRIIEFAAIRFTF-DEVIDSMEFL-I--NPERVVSAESQRIHHISDAMLRDKP-KIAEVFPQI 81 (250)
T ss_pred CCEEEEEEECCCCCCCCCEEEEEEEEEEEC-CEEEEEEEEE-E--CCCCCCCHHHHHHHCCCHHHHHCCC-CHHHHHHHH
T ss_conf 988999733799799996279999999999-9886889999-8--9289799889876154899984699-999999999
Q ss_pred HHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 99951179659995055789999999998507853213256887100158888655565321002444445443310898
Q gi|254780661|r 83 HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 (471)
Q Consensus 83 ~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~~ 162 (471)
T Consensus 82 ~~fi~~-~~ilVaHN-a~FD~~fL~~e~~r~g~~~~~----~~~~~IDTl~lAr~~----~----------~~~~~~L~~ 141 (250)
T PRK06310 82 KGFFKE-GDYIVGHS-VGFDLQVLAQEAERIGETFLS----KHYYIIDTLRLAKEY----G----------DSPNNSLEA 141 (250)
T ss_pred HHHHCC-CCEEEEEC-HHHHHHHHHHHHHHCCCCCCC----CCCCEECHHHHHHHC----C----------CCCCCHHHH
T ss_conf 999679-99999938-455799999999976998665----679578499999756----7----------654560999
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEE
Q ss_conf 99871887643101333189999999999864226899999623889899742001576079970101047787506886
Q gi|254780661|r 163 LALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 (471)
Q Consensus 163 la~~n~i~~~~aH~A~~D~~~t~~l~k~i~~~~p~~~~~~l~~~~K~~v~~~l~~~~~~~~~~v~~~~~~~~~~~~~v~~ 242 (471)
T Consensus 142 L~~~~~i~~~~aHrAl~Da~aTa~vf~~l~~r~~~----------~e~~~~i~~~p~~---~~---~f~FGKhKGk~v~e 205 (250)
T PRK06310 142 LAVHFNVPYDGNHRAMKDVEININVFKHLCKRFRT----------LEQLKQVLSKPIK---MK---YMPLGKHKGRLFSE 205 (250)
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC----------HHHHHHHHCCCCC---CC---EECCCCCCCEEHHH
T ss_conf 99970999986668199999999999999985537----------9999998619463---42---00577849888998
Q ss_pred EECCCCCCCEEE
Q ss_conf 302888774478
Q gi|254780661|r 243 VAWHPRYKDSVI 254 (471)
Q Consensus 243 ~~~~p~~~n~~i 254 (471)
T Consensus 206 v~--~~Y~~W~~ 215 (250)
T PRK06310 206 IP--LEYLQWAS 215 (250)
T ss_pred HH--HHHHHHHH
T ss_conf 17--99999998