HHsearch alignment for GI: 254780661 and conserved domain: PRK06310

>PRK06310 DNA polymerase III subunit epsilon; Validated.
Probab=100.00  E-value=3.8e-33  Score=231.84  Aligned_cols=209  Identities=21%  Similarity=0.186  Sum_probs=158.1

Q ss_pred             CCEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHH
Q ss_conf             83799975278898772604899999983897280400226621788877857898985799889960799979999999
Q gi|254780661|r    3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRI   82 (471)
Q Consensus         3 ~~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~i   82 (471)
T Consensus         7 ~~yvv~D~ETTGl~~~~DrIIEI~~vkv~~-~~i~~~~~~l-i--nP~~~I~~~~~~ihGIt~emV~d~P-~f~ev~~~~   81 (250)
T PRK06310          7 TEFVCLDCETTGLDVKKDRIIEFAAIRFTF-DEVIDSMEFL-I--NPERVVSAESQRIHHISDAMLRDKP-KIAEVFPQI   81 (250)
T ss_pred             CCEEEEEEECCCCCCCCCEEEEEEEEEEEC-CEEEEEEEEE-E--CCCCCCCHHHHHHHCCCHHHHHCCC-CHHHHHHHH
T ss_conf             988999733799799996279999999999-9886889999-8--9289799889876154899984699-999999999


Q ss_pred             HHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf             99951179659995055789999999998507853213256887100158888655565321002444445443310898
Q gi|254780661|r   83 HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD  162 (471)
Q Consensus        83 ~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~~  162 (471)
T Consensus        82 ~~fi~~-~~ilVaHN-a~FD~~fL~~e~~r~g~~~~~----~~~~~IDTl~lAr~~----~----------~~~~~~L~~  141 (250)
T PRK06310         82 KGFFKE-GDYIVGHS-VGFDLQVLAQEAERIGETFLS----KHYYIIDTLRLAKEY----G----------DSPNNSLEA  141 (250)
T ss_pred             HHHHCC-CCEEEEEC-HHHHHHHHHHHHHHCCCCCCC----CCCCEECHHHHHHHC----C----------CCCCCHHHH
T ss_conf             999679-99999938-455799999999976998665----679578499999756----7----------654560999


Q ss_pred             HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEE
Q ss_conf             99871887643101333189999999999864226899999623889899742001576079970101047787506886
Q gi|254780661|r  163 LALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP  242 (471)
Q Consensus       163 la~~n~i~~~~aH~A~~D~~~t~~l~k~i~~~~p~~~~~~l~~~~K~~v~~~l~~~~~~~~~~v~~~~~~~~~~~~~v~~  242 (471)
T Consensus       142 L~~~~~i~~~~aHrAl~Da~aTa~vf~~l~~r~~~----------~e~~~~i~~~p~~---~~---~f~FGKhKGk~v~e  205 (250)
T PRK06310        142 LAVHFNVPYDGNHRAMKDVEININVFKHLCKRFRT----------LEQLKQVLSKPIK---MK---YMPLGKHKGRLFSE  205 (250)
T ss_pred             HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC----------HHHHHHHHCCCCC---CC---EECCCCCCCEEHHH
T ss_conf             99970999986668199999999999999985537----------9999998619463---42---00577849888998


Q ss_pred             EECCCCCCCEEE
Q ss_conf             302888774478
Q gi|254780661|r  243 VAWHPRYKDSVI  254 (471)
Q Consensus       243 ~~~~p~~~n~~i  254 (471)
T Consensus       206 v~--~~Y~~W~~  215 (250)
T PRK06310        206 IP--LEYLQWAS  215 (250)
T ss_pred             HH--HHHHHHHH
T ss_conf             17--99999998