HHsearch alignment for GI: 254780661 and conserved domain: PRK07246
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated.
Probab=100.00 E-value=1.9e-33 Score=233.74 Aligned_cols=169 Identities=21% Similarity=0.256 Sum_probs=145.3
Q ss_pred CCCCEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHH
Q ss_conf 98837999752788987726048999999838972804002266217888778578989857998899607999799999
Q gi|254780661|r 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSR 80 (471)
Q Consensus 1 m~~~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~ 80 (471)
T Consensus 5 ~~~~~~vvDlETTG~~~~-~~Iiqi~~v~~-~~~~i~~~f~t~-v--nP~~~ip~~I~~LTgI~~~~v~~ap-~f~~v~~ 78 (820)
T PRK07246 5 KLRKYAVVDLEATGAGPN-ASIIQVGIVII-QGNKIIDSYETD-V--NPHESLDEHIVHLTGITDKQLAQAP-DFSQVAH 78 (820)
T ss_pred CCCCEEEEEEECCCCCCC-CCEEEEEEEEE-ECCEEEEEEEEC-C--CCCCCCCHHHHHHCCCCHHHHHCCC-CHHHHHH
T ss_conf 467189999887898999-87799999999-999998998731-1--8899799788864698989985299-9899999
Q ss_pred HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf 99999511796599950557899999999985078532132568871001588886555653210024444454433108
Q gi|254780661|r 81 RIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160 (471)
Q Consensus 81 ~i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL 160 (471)
T Consensus 79 ~~~~~l~--~~~~VaHN-v~FD~~fl~~~~~~~g~~-~------~~~~~DTv~La~i~---~P----------~~~~y~L 135 (820)
T PRK07246 79 HIYQLIE--DCIFVAHN-VKFDANLLAEALFLEGYE-L------RTPRVDTVELAQVF---FP----------RLEKYSL 135 (820)
T ss_pred HHHHHHC--CCEEEEEC-CCCCHHHHHHHHHHCCCC-C------CCCCCCHHHHHHHH---CC----------CCCCCCH
T ss_conf 9999967--98599837-201699999999975898-8------99826099999997---79----------8788888
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98998718876431013331899999999998642268
Q gi|254780661|r 161 QDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198 (471)
Q Consensus 161 ~~la~~n~i~~~~aH~A~~D~~~t~~l~k~i~~~~p~~ 198 (471)
T Consensus 136 ~~L~~~l~~~~~~~HrA~~Da~ata~l~~~l~~~l~~l 173 (820)
T PRK07246 136 SHLSRQLNIDLAEAHTAIADARATAILFLRLLQKIESL 173 (820)
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999739999988761889999999999999998619