HHsearch alignment for GI: 254780661 and conserved domain: PRK07247
>PRK07247 DNA polymerase III subunit epsilon; Validated.
Probab=99.97 E-value=2.9e-29 Score=206.82 Aligned_cols=169 Identities=19% Similarity=0.139 Sum_probs=135.3
Q ss_pred CCCEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHH
Q ss_conf 88379997527889877260489999998389728040022662178887785789898579988996079997999999
Q gi|254780661|r 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRR 81 (471)
Q Consensus 2 ~~~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~ 81 (471)
T Consensus 4 ~~~yvv~DlETTg~~~-~~~IIEIgAVk~~-~g~ivd~F~sl-Vn--P~~~I~~~i~~lTGIt~~~v~~aP-~~~eVl~~ 77 (195)
T PRK07247 4 LETYIAFDLEFNTVND-VSHIIQVSAVKYD-HHKEVDSFDTY-VY--TDVPLQSFINGLTGITADKIAAAP-KVEEVLAA 77 (195)
T ss_pred CCEEEEEEEECCCCCC-CCEEEEEEEEEEE-CCEEEEEEEEE-EC--CCCCCCHHHHHCCCCCHHHHHCCC-CHHHHHHH
T ss_conf 8849999977899999-9806999999998-99899999835-66--989999555413598999983599-99999999
Q ss_pred HHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 99995117965999505578999999999850785321325688710015888865556532100244444544331089
Q gi|254780661|r 82 IHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161 (471)
Q Consensus 82 i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~ 161 (471)
T Consensus 78 f~~Fig--d~~lVaHNa~~FD~~fL~~~~~~~~~~~-------~~~~~~~~~~~r~~--~----------~p~l~n~kL~ 136 (195)
T PRK07247 78 FKNFVG--ELPLIGYNAQKSDLPILAENGLDLRDQY-------QVDLFDEAFDRRSS--D----------LNGIANLKLQ 136 (195)
T ss_pred HHHHHC--CCEEEEECCCHHHHHHHHHHHHHHCCCC-------CCCHHHHHHHHHHH--C----------CCCCCCCCHH
T ss_conf 999968--9918990884514999999877415776-------68569999999886--0----------5887677789
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8998718876431013331899999999998642268
Q gi|254780661|r 162 DLALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198 (471)
Q Consensus 162 ~la~~n~i~~~~aH~A~~D~~~t~~l~k~i~~~~p~~ 198 (471)
T Consensus 137 tLa~~f~I~-~~~HRAl~DA~aTa~If~klLe~~~~~ 172 (195)
T PRK07247 137 TVATFLGIK-GRGHNSLEDARMTARIYESFLETDTNK 172 (195)
T ss_pred HHHHHCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999974999-989081899999999999999976643