HHsearch alignment for GI: 254780661 and conserved domain: PRK07942
>PRK07942 DNA polymerase III subunit epsilon; Provisional.
Probab=100.00 E-value=1e-31 Score=222.69 Aligned_cols=184 Identities=24% Similarity=0.241 Sum_probs=151.9
Q ss_pred CCEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHH
Q ss_conf 83799975278898772604899999983897280400226621788877857898985799889960799979999999
Q gi|254780661|r 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRI 82 (471)
Q Consensus 3 ~~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~i 82 (471)
T Consensus 6 ~~lvvfD~ETTG~d~~~dRIIeia~V~~~~~g~~~~~~~~L-v--nPg~~IP~~a~~vhGIT~e~~~~~G~p~a~v~~ei 82 (234)
T PRK07942 6 GPLAAFDLETTGVDPETARIVTAAIVVVDAHGEVVERREWL-A--DPGVEIPEEASAVHGITTERARAHGRPAAEVLAEI 82 (234)
T ss_pred CCEEEEEEECCCCCCCCCEEEEEEEEEEECCCCEEEEEEEE-E--CCCCCCCHHHHHHHCCCHHHHHHCCCCCHHHHHHH
T ss_conf 97899980169989889838999999998898546889998-6--95894998897784889999974289830799999
Q ss_pred HHHHHC---CCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 999511---79659995055789999999998507853213256887100158888655565321002444445443310
Q gi|254780661|r 83 HQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159 (471)
Q Consensus 83 ~~~~~~---~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~k 159 (471)
T Consensus 83 a~~l~~~~~~g~~lVahN-A~FDl~fL~~El~R~g~~~l-----~~~~viDtl~l~r~l~~~r~----------g--kr~ 144 (234)
T PRK07942 83 AEALRAVWRAGVPVVVYN-APYDLTVLDRELRRHGLPSL-----VPGPVIDPYVIDKHVDRYRK----------G--KRT 144 (234)
T ss_pred HHHHHHHHHCCCEEEEEC-CHHHHHHHHHHHHHCCCCCC-----CCCCEEEHHHHHHHHCCCCC----------C--CCC
T ss_conf 999999972798799967-07649999999998599967-----77755619998877514777----------8--888
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 898998718876431013331899999999998642268999996238
Q gi|254780661|r 160 LQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRN 207 (471)
Q Consensus 160 L~~la~~n~i~~~~aH~A~~D~~~t~~l~k~i~~~~p~~~~~~l~~~~ 207 (471)
T Consensus 145 L~aL~~~ygv~l~~aH~A~aDA~Ata~l~~~l~~r~~~l~~~~~~eL~ 192 (234)
T PRK07942 145 LTALCEHYGVRLDNAHDATADALAAARLAWALARRFPELAALSAAELH 192 (234)
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 999999849988775564152899999999999876887559999999