HHsearch alignment for GI: 254780661 and conserved domain: PRK07942

>PRK07942 DNA polymerase III subunit epsilon; Provisional.
Probab=100.00  E-value=1e-31  Score=222.69  Aligned_cols=184  Identities=24%  Similarity=0.241  Sum_probs=151.9

Q ss_pred             CCEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHH
Q ss_conf             83799975278898772604899999983897280400226621788877857898985799889960799979999999
Q gi|254780661|r    3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRI   82 (471)
Q Consensus         3 ~~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~i   82 (471)
T Consensus         6 ~~lvvfD~ETTG~d~~~dRIIeia~V~~~~~g~~~~~~~~L-v--nPg~~IP~~a~~vhGIT~e~~~~~G~p~a~v~~ei   82 (234)
T PRK07942          6 GPLAAFDLETTGVDPETARIVTAAIVVVDAHGEVVERREWL-A--DPGVEIPEEASAVHGITTERARAHGRPAAEVLAEI   82 (234)
T ss_pred             CCEEEEEEECCCCCCCCCEEEEEEEEEEECCCCEEEEEEEE-E--CCCCCCCHHHHHHHCCCHHHHHHCCCCCHHHHHHH
T ss_conf             97899980169989889838999999998898546889998-6--95894998897784889999974289830799999


Q ss_pred             HHHHHC---CCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             999511---79659995055789999999998507853213256887100158888655565321002444445443310
Q gi|254780661|r   83 HQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK  159 (471)
Q Consensus        83 ~~~~~~---~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~k  159 (471)
T Consensus        83 a~~l~~~~~~g~~lVahN-A~FDl~fL~~El~R~g~~~l-----~~~~viDtl~l~r~l~~~r~----------g--kr~  144 (234)
T PRK07942         83 AEALRAVWRAGVPVVVYN-APYDLTVLDRELRRHGLPSL-----VPGPVIDPYVIDKHVDRYRK----------G--KRT  144 (234)
T ss_pred             HHHHHHHHHCCCEEEEEC-CHHHHHHHHHHHHHCCCCCC-----CCCCEEEHHHHHHHHCCCCC----------C--CCC
T ss_conf             999999972798799967-07649999999998599967-----77755619998877514777----------8--888


Q ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             898998718876431013331899999999998642268999996238
Q gi|254780661|r  160 LQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRN  207 (471)
Q Consensus       160 L~~la~~n~i~~~~aH~A~~D~~~t~~l~k~i~~~~p~~~~~~l~~~~  207 (471)
T Consensus       145 L~aL~~~ygv~l~~aH~A~aDA~Ata~l~~~l~~r~~~l~~~~~~eL~  192 (234)
T PRK07942        145 LTALCEHYGVRLDNAHDATADALAAARLAWALARRFPELAALSAAELH  192 (234)
T ss_pred             HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             999999849988775564152899999999999876887559999999