HHsearch alignment for GI: 254780661 and conserved domain: PRK08074
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated.
Probab=100.00 E-value=9.9e-35 Score=242.00 Aligned_cols=171 Identities=25% Similarity=0.329 Sum_probs=150.0
Q ss_pred CCCCEEEEECCCCCCCCCC-CEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHH
Q ss_conf 9883799975278898772-604899999983897280400226621788877857898985799889960799979999
Q gi|254780661|r 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79 (471)
Q Consensus 1 m~~~~v~~D~ETtG~~~~~-~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~ 79 (471)
T Consensus 1 m~~~~~vvDlETTG~~~~~~d~IIqig~v~i-~~~~i~~~f~t~-v--nP~~~iP~~I~~LTgI~~~~v~~AP-~f~eva 75 (932)
T PRK08074 1 MSKRFVVVDLETTGNSPKKGDKIIQIAAVVV-EDGEILERFSTF-V--NPERPIPPFITELTGISEEMVKNAP-LFEDVA 75 (932)
T ss_pred CCCEEEEEEEECCCCCCCCCCEEEEEEEEEE-ECCEEEEEEECC-C--CCCCCCCHHHHHHCCCCHHHHCCCC-CHHHHH
T ss_conf 9970899998888989777988999979999-999998998532-5--8999899778860698989980599-989999
Q ss_pred HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999951179659995055789999999998507853213256887100158888655565321002444445443310
Q gi|254780661|r 80 RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159 (471)
Q Consensus 80 ~~i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~k 159 (471)
T Consensus 76 ~~i~~~l~--~~~~VaHN-v~FD~~FL~~~l~~~G~~~~------~~~~~DTveLa~i~---~P----------~~~sy~ 133 (932)
T PRK08074 76 PMIVELLE--GAYFVAHN-VHFDLNFLNEELERAGYTEI------HCPKLDTVELARIL---LP----------TADSYK 133 (932)
T ss_pred HHHHHHHC--CCEEEECC-HHHHHHHHHHHHHHCCCCCC------CCCEECHHHHHHHH---CC----------CCCCCC
T ss_conf 99999966--99599478-05409999999997399866------68765199999997---78----------878888
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 898998718876431013331899999999998642268
Q gi|254780661|r 160 LQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198 (471)
Q Consensus 160 L~~la~~n~i~~~~aH~A~~D~~~t~~l~k~i~~~~p~~ 198 (471)
T Consensus 134 L~~L~~~l~i~~~~~HrA~sDa~aTa~l~~~l~~~l~~l 172 (932)
T PRK08074 134 LSDLSEELELEHDQPHRADSDAEVTAELFLQLLHKLERL 172 (932)
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 899998649999998751788999999999999999837