HHsearch alignment for GI: 254780661 and conserved domain: PRK08074

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated.
Probab=100.00  E-value=9.9e-35  Score=242.00  Aligned_cols=171  Identities=25%  Similarity=0.329  Sum_probs=150.0

Q ss_pred             CCCCEEEEECCCCCCCCCC-CEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHH
Q ss_conf             9883799975278898772-604899999983897280400226621788877857898985799889960799979999
Q gi|254780661|r    1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS   79 (471)
Q Consensus         1 m~~~~v~~D~ETtG~~~~~-~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~   79 (471)
T Consensus         1 m~~~~~vvDlETTG~~~~~~d~IIqig~v~i-~~~~i~~~f~t~-v--nP~~~iP~~I~~LTgI~~~~v~~AP-~f~eva   75 (932)
T PRK08074          1 MSKRFVVVDLETTGNSPKKGDKIIQIAAVVV-EDGEILERFSTF-V--NPERPIPPFITELTGISEEMVKNAP-LFEDVA   75 (932)
T ss_pred             CCCEEEEEEEECCCCCCCCCCEEEEEEEEEE-ECCEEEEEEECC-C--CCCCCCCHHHHHHCCCCHHHHCCCC-CHHHHH
T ss_conf             9970899998888989777988999979999-999998998532-5--8999899778860698989980599-989999


Q ss_pred             HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             99999951179659995055789999999998507853213256887100158888655565321002444445443310
Q gi|254780661|r   80 RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK  159 (471)
Q Consensus        80 ~~i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~k  159 (471)
T Consensus        76 ~~i~~~l~--~~~~VaHN-v~FD~~FL~~~l~~~G~~~~------~~~~~DTveLa~i~---~P----------~~~sy~  133 (932)
T PRK08074         76 PMIVELLE--GAYFVAHN-VHFDLNFLNEELERAGYTEI------HCPKLDTVELARIL---LP----------TADSYK  133 (932)
T ss_pred             HHHHHHHC--CCEEEECC-HHHHHHHHHHHHHHCCCCCC------CCCEECHHHHHHHH---CC----------CCCCCC
T ss_conf             99999966--99599478-05409999999997399866------68765199999997---78----------878888


Q ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             898998718876431013331899999999998642268
Q gi|254780661|r  160 LQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKL  198 (471)
Q Consensus       160 L~~la~~n~i~~~~aH~A~~D~~~t~~l~k~i~~~~p~~  198 (471)
T Consensus       134 L~~L~~~l~i~~~~~HrA~sDa~aTa~l~~~l~~~l~~l  172 (932)
T PRK08074        134 LSDLSEELELEHDQPHRADSDAEVTAELFLQLLHKLERL  172 (932)
T ss_pred             HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             899998649999998751788999999999999999837