HHsearch alignment for GI: 254780661 and conserved domain: PRK08517

>PRK08517 DNA polymerase III subunit epsilon; Provisional.
Probab=100.00  E-value=1.1e-34  Score=241.84  Aligned_cols=169  Identities=20%  Similarity=0.201  Sum_probs=147.6

Q ss_pred             CCCEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHH
Q ss_conf             88379997527889877260489999998389728040022662178887785789898579988996079997999999
Q gi|254780661|r    2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRR   81 (471)
Q Consensus         2 ~~~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~   81 (471)
T Consensus        69 e~~fvvvDlETTGl~~~~d~IIEIgavkv-~~g~iid~f~tl-Vnp~--~I-p~~It~lTGIt~emv~~aP-~~~evl~~  142 (259)
T PRK08517         69 EQVFCFVDIETNGSKPKKGQIIEIGAVKV-KGGEIIDRFESF-VKAK--EV-PEYITELTGITYEDLENAP-SLKEVLED  142 (259)
T ss_pred             CCCEEEEEEECCCCCCCCCEEEEEEEEEE-ECCEEEEEEEEE-ECCC--CC-CHHHHHHCCCCHHHHHCCC-CHHHHHHH
T ss_conf             88389999658998999982499999999-999999987432-3989--89-9888221389989982799-88999999


Q ss_pred             HHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf             99995117965999505578999999999850785321325688710015888865556532100244444544331089
Q gi|254780661|r   82 IHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ  161 (471)
Q Consensus        82 i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~  161 (471)
T Consensus       143 f~~Fi~--d~ilVaHN-a~FD~~FL~~~l~r~g~~~l------~n~~lDTl~LAR~~~---p~-----------~~ykL~  199 (259)
T PRK08517        143 FRLFLG--DSVFVAHN-VNFDYNFISRSLEEIGLGPL------LNRKLCTIDLAKRTI---ES-----------PRYGLS  199 (259)
T ss_pred             HHHHHC--CCEEEEEC-CHHHHHHHHHHHHHCCCCCC------CCCEEEEHHHHHHHC---CC-----------CCCCHH
T ss_conf             999968--89599937-27609999999998399976------898566089999875---87-----------787889


Q ss_pred             HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89987188764310133318999999999986422689
Q gi|254780661|r  162 DLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLF  199 (471)
Q Consensus       162 ~la~~n~i~~~~aH~A~~D~~~t~~l~k~i~~~~p~~~  199 (471)
T Consensus       200 ~La~~~~I~~~~~HRAl~DA~aTaevF~~~L~~l~~~v  237 (259)
T PRK08517        200 FLKELLGIETEVHHRAYADALAAYEIFEICLLNLPSYI  237 (259)
T ss_pred             HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             99997598999997845889999999999998566556