HHsearch alignment for GI: 254780661 and conserved domain: PRK08517
>PRK08517 DNA polymerase III subunit epsilon; Provisional.
Probab=100.00 E-value=1.1e-34 Score=241.84 Aligned_cols=169 Identities=20% Similarity=0.201 Sum_probs=147.6
Q ss_pred CCCEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHH
Q ss_conf 88379997527889877260489999998389728040022662178887785789898579988996079997999999
Q gi|254780661|r 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRR 81 (471)
Q Consensus 2 ~~~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~ 81 (471)
T Consensus 69 e~~fvvvDlETTGl~~~~d~IIEIgavkv-~~g~iid~f~tl-Vnp~--~I-p~~It~lTGIt~emv~~aP-~~~evl~~ 142 (259)
T PRK08517 69 EQVFCFVDIETNGSKPKKGQIIEIGAVKV-KGGEIIDRFESF-VKAK--EV-PEYITELTGITYEDLENAP-SLKEVLED 142 (259)
T ss_pred CCCEEEEEEECCCCCCCCCEEEEEEEEEE-ECCEEEEEEEEE-ECCC--CC-CHHHHHHCCCCHHHHHCCC-CHHHHHHH
T ss_conf 88389999658998999982499999999-999999987432-3989--89-9888221389989982799-88999999
Q ss_pred HHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 99995117965999505578999999999850785321325688710015888865556532100244444544331089
Q gi|254780661|r 82 IHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161 (471)
Q Consensus 82 i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~ 161 (471)
T Consensus 143 f~~Fi~--d~ilVaHN-a~FD~~FL~~~l~r~g~~~l------~n~~lDTl~LAR~~~---p~-----------~~ykL~ 199 (259)
T PRK08517 143 FRLFLG--DSVFVAHN-VNFDYNFISRSLEEIGLGPL------LNRKLCTIDLAKRTI---ES-----------PRYGLS 199 (259)
T ss_pred HHHHHC--CCEEEEEC-CHHHHHHHHHHHHHCCCCCC------CCCEEEEHHHHHHHC---CC-----------CCCCHH
T ss_conf 999968--89599937-27609999999998399976------898566089999875---87-----------787889
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89987188764310133318999999999986422689
Q gi|254780661|r 162 DLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199 (471)
Q Consensus 162 ~la~~n~i~~~~aH~A~~D~~~t~~l~k~i~~~~p~~~ 199 (471)
T Consensus 200 ~La~~~~I~~~~~HRAl~DA~aTaevF~~~L~~l~~~v 237 (259)
T PRK08517 200 FLKELLGIETEVHHRAYADALAAYEIFEICLLNLPSYI 237 (259)
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99997598999997845889999999999998566556