HHsearch alignment for GI: 254780661 and conserved domain: PRK09145
>PRK09145 DNA polymerase III subunit epsilon; Validated.
Probab=99.97 E-value=6.9e-30 Score=210.88 Aligned_cols=172 Identities=17% Similarity=0.179 Sum_probs=133.2
Q ss_pred CCCEEEEECCCCCCCCCCCEEEEEEEEEECCCCEEC--CEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHH
Q ss_conf 883799975278898772604899999983897280--400226621788877857898985799889960799979999
Q gi|254780661|r 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI--ESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79 (471)
Q Consensus 2 ~~~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~--~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~ 79 (471)
T Consensus 28 ~~~fVv~D~ETTGL~~~~D~IieIgav~v~~-~~i~~~~~f~~l-V~--P~~~i~~~~~~IhGIt~~~l~~ap-~~~evl 102 (203)
T PRK09145 28 PDEWVALDCETTGLDPRRAEIVSIAAVKIRG-NRILTSERLELL-VR--PPQSLSAESIKIHRLRHQDLEHGL-SEEEAL 102 (203)
T ss_pred CCCEEEEEEECCCCCCCCCEEEEEEEEEEEC-CEEECCCEEEEE-EC--CCCCCCHHHHCCCCCCHHHHCCCC-CHHHHH
T ss_conf 9989999856899999997069999999999-999317528999-89--799598645201387879981399-999999
Q ss_pred HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999951179659995055789999999998507853213256887100158888655565321002444445443310
Q gi|254780661|r 80 RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159 (471)
Q Consensus 80 ~~i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~k 159 (471)
T Consensus 103 ~~f~~fi~--~~~lVgHN-a~FD~~fL~~~~~r~~g~~------l~~~~id~~~l~~~~--~~~------~~~~~~~~~~ 165 (203)
T PRK09145 103 RQLLAFIG--NRPLVGYY-LEFDVAMLNRYVRPLLGIG------LPNPLIEVSSLYHDK--KER------HLPDAYIDLR 165 (203)
T ss_pred HHHHHHCC--CCEEEEEC-HHHHHHHHHHHHHHHCCCC------CCCCEEEHHHHHHHH--HHH------HCCCCCCCCC
T ss_conf 99998829--99899987-8999999999999962999------999877609879999--996------6769877889
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 898998718876431013331899999999998642
Q gi|254780661|r 160 LQDLALANGIEHVNAHDAKADVYATLALVWLIREKK 195 (471)
Q Consensus 160 L~~la~~n~i~~~~aH~A~~D~~~t~~l~k~i~~~~ 195 (471)
T Consensus 166 L~~l~~~~gi~~~~~HrAL~DA~aTa~lfl~L~k~~ 201 (203)
T PRK09145 166 FDAILKHLDLPVLGRHDALNDAIMTALIYLRLRKGD 201 (203)
T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 999998579878999798999999999999986789