>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family; InterPro: IPR006054 All proteins in this entry for which functions are known are components of the DNA polymerase III complex (epsilon subunit). There is, however, an outgroup that includes paralogs in some gamma-proteobacteria and the N-terminal region of DinG from some low GC Gram-positive bacteria. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication.

Probab=99.90 E-value=4.3e-23 Score=167.20 Aligned_cols=174 Identities=22% Similarity=0.205 Sum_probs=149.3 Q ss_pred CCEEEEECCCCCCCCCCCEEEEEEEEE-ECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHH Q ss_conf 837999752788987726048999999-8389728040022662178887785789898579988996079997999999 Q gi|254780661|r 3 NHFVIYDYETFGRDVALDRPAQFAGVR-VDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRR 81 (471) Q Consensus 3 ~~~v~~D~ETtG~~~~~~~iiq~~~i~-~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~ 81 (471) T Consensus 7 ~t~t~~d~e~tgl~~~~~~II~IGAv~~i~r-r~~~~~~~~~---~~P~R~~~~~~~k~hGItDd~L~dkP-~F~eia~d 81 (228) T TIGR00573 7 DTFTTGDNETTGLYAKHDEIIEIGAVEIINR-RIIGNKFHTY---IKPDRLIDPDAIKIHGITDDMLKDKP-DFKEIAED 81 (228) T ss_pred EEEEEEECCCCCCCCCCCCEEEEEEEEEECC-CEEECCEEEE---ECCCCCCCCCEEEECCCCHHHHCCCC-CHHHHHHH T ss_conf 4268752110676322430454533766446-1440100577---61888889642552488828846898-51378899 Q ss_pred HHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH Q ss_conf 99995117965999505578999999999850785321325688710015888865556532100244444544331089 Q gi|254780661|r 82 IHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161 (471) Q Consensus 82 i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~ 161 (471) T Consensus 82 F~~~I~--g~~Lv~HN-A~FD~GFl~~e~~~LG~~~----~~~~~~v~~~~~~~~~~~~~~p~-----------~~~~Ld 143 (228) T TIGR00573 82 FADYIK--GAVLVIHN-ASFDVGFLNYEFSKLGLKK----EPKTNDVIDTTDTLQAARPEFPG-----------KRNTLD 143 (228) T ss_pred HHHHHC--CCEEEEEH-HHCCHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHHHHHHHCCC-----------CCCHHH T ss_conf 999837--94787520-0305778999998514501----10011444499999999720588-----------430277 Q ss_pred HHHHHHCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89987188764--310133318999999999986422689 Q gi|254780661|r 162 DLALANGIEHV--NAHDAKADVYATLALVWLIREKKPKLF 199 (471) Q Consensus 162 ~la~~n~i~~~--~aH~A~~D~~~t~~l~k~i~~~~p~~~ 199 (471) T Consensus 144 ~L~~~~~~~~s~R~~H~A~~DA~~l~~~~~~~~~~~~~~~ 183 (228) T TIGR00573 144 ALALRYEITNSHRALHGALLDAFILAKLYLVMTGKQTKYN 183 (228) T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 7787805440377773177889999999999986122032

HHsearch alignment for GI: 254780661 and conserved domain: TIGR00573