>TIGR01298 RNaseT ribonuclease T; InterPro: IPR005987 Ribonuclease T (3.1.13 from EC) is an enzyme found so far only in gamma-subdivision proteobacteria such as Escherichia coli and Xylella fastidiosa. Ribonuclease T is homologous to the DNA polymerase III alpha chain. It can liberate AMP from the common C-C-A terminus of uncharged tRNA. It appears also to be involved in RNA maturation. It also acts as a 3' to 5' single-strand DNA-specific exonuclease; it is distinctive for its ability to remove residues near a double-stranded stem. Ribonuclease T is a high copy suppressor in E. coli of a UV-repair defect caused by deletion of three other single-stranded DNA exonucleases.; GO: 0004540 ribonuclease activity, 0006396 RNA processing.

Probab=99.49 E-value=1.9e-13 Score=105.13 Aligned_cols=173 Identities=24% Similarity=0.244 Sum_probs=129.6 Q ss_pred EEEECCCCCCCCCCCEEEEEEEE--EECCCCEEC-CEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHH Q ss_conf 99975278898772604899999--983897280-400226621788877857898985799889960799979999999 Q gi|254780661|r 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRI 82 (471) Q Consensus 6 v~~D~ETtG~~~~~~~iiq~~~i--~~d~~~~~~-~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~i 82 (471) T Consensus 11 VVvDVET~GfN~~~dALLEiAait~~MDe~G~L~P~~~~~~~~~P~~Gani~P~~L~~~GI~~d~P~R~A~~E~~Al~~i 90 (201) T TIGR01298 11 VVVDVETAGFNAKTDALLEIAAITLKMDEQGYLVPDETLHFHVEPFEGANIEPEALEFTGIDLDHPLRGAVEEKLALEEI 90 (201) T ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCEEEEEEECCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHH T ss_conf 48861067766013455555420001167300147852578852267998871200220654488752246688999999 Q ss_pred HHHH----HCCCC---EEEEEECHHHHHHHHH-HHHHHHCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 9995----11796---5999505578999999-999850785-3213256887100158888655565321002444445 Q gi|254780661|r 83 HQFF----SVPNT---CIIGYNNIRFDDYYSR-NIFYRNFYD-SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDD 153 (471) Q Consensus 83 ~~~~----~~~~~---~~ig~N~~~FD~~~lr-~~~~r~~~~-~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~ 153 (471) T Consensus 91 F~~vR~~~K~~gC~RailV~HN-a~fD~~Fl~~AA~~R~~~KRnPFH~F----~~FDTatLAGl~yGQ------------ 153 (201) T TIGR01298 91 FKVVRKALKASGCQRAILVAHN-ASFDLGFLNRAAVKRTALKRNPFHPF----SVFDTATLAGLAYGQ------------ 153 (201) T ss_pred HHHHHHHHHHCCCCEEEEEECC-CCCCHHHHHHHHHHHHHCCCCCCCCC----CHHHHHHHHHHHHHH------------ T ss_conf 9999999975579603676003-20466689999999861157898765----224689998886417------------ Q ss_pred CCCCCCHHHHHHHHCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 44331089899871887--64310133318999999999986422689 Q gi|254780661|r 154 GATSFKLQDLALANGIE--HVNAHDAKADVYATLALVWLIREKKPKLF 199 (471) Q Consensus 154 ~~~~~kL~~la~~n~i~--~~~aH~A~~D~~~t~~l~k~i~~~~p~~~ 199 (471) T Consensus 154 ----TVL~kA~Q~Ag~~fd~~~AHSA~YDtE~TA~LFC~ivN~wk~~g 197 (201) T TIGR01298 154 ----TVLAKACQAAGLDFDAKQAHSALYDTEKTAELFCEIVNRWKELG 197 (201) T ss_pred ----HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf ----99998886427886754431012003568999998863045504

HHsearch alignment for GI: 254780661 and conserved domain: TIGR01298