HHsearch alignment for GI: 254780661 and conserved domain: TIGR01406
>TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit; InterPro: IPR006309 These represent DnaQ, the DNA polymerase III epsilon subunit, as found in most Proteobacteria. It consists largely of an exonuclease region as described in IPR006055 from INTERPRO. In Gram-positive bacteria, closely related regions are found both in the Gram-positive type DNA polymerase III alpha subunit and as an additional N-terminal domain of a DinG-family helicase. Both are not included in this set of sequences, as they are smaller proteins.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication.
Probab=99.94 E-value=1.6e-25 Score=182.77 Aligned_cols=190 Identities=19% Similarity=0.145 Sum_probs=154.0
Q ss_pred EEEEECCCCCCCCCC------CEEEEEEEE-EECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHC--CCCH
Q ss_conf 799975278898772------604899999-9838972804002266217888778578989857998899607--9997
Q gi|254780661|r 5 FVIYDYETFGRDVAL------DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRD--GVVE 75 (471)
Q Consensus 5 ~v~~D~ETtG~~~~~------~~iiq~~~i-~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~--~~~~ 75 (471)
T Consensus 2 ~IiLDTETTGl~~~~G~~~~GhRivEIGavE~vnr~~tG-~~fH~-Y~~P--~Rd~p~eA~kVHGiT~efL~dKnaP-~F 76 (246)
T TIGR01406 2 EIILDTETTGLDPKGGLPYIGHRIVEIGAVELVNRMLTG-KNFHV-YVKP--ERDIPAEAAKVHGITDEFLKDKNAP-KF 76 (246)
T ss_pred EEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCC-CCEEE-EECC--CCCCHHHCEECCCCCHHHHCCCCCC-CH
T ss_conf 267115556877667768568626888218567350388-73124-3368--8877300210137646884688989-52
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999999995117965999505578999999999850785321325688710015888865556532100244444544
Q gi|254780661|r 76 AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGA 155 (471)
Q Consensus 76 ~e~~~~i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~ 155 (471)
T Consensus 77 k~Ia~~Fl~Fi~--~~~LvIHN-A~FD~gFlN~EL~~Lg~~~~~~-~~~~~~~~DTL~mAR~~---FPG----------~ 139 (246)
T TIGR01406 77 KEIADEFLDFIK--GSELVIHN-AAFDVGFLNYELERLGLKEIKK-ISDFCRVIDTLAMARER---FPG----------K 139 (246)
T ss_pred HHHHHHHHHHHC--CCEEEEEC-CCHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHC---CCC----------C
T ss_conf 578999999845--98899975-7021678999998728732100-01366786568999723---789----------8
Q ss_pred CCCCHHHHHHHHCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 331089899871887643--10133318999999999986422689999962388989974200
Q gi|254780661|r 156 TSFKLQDLALANGIEHVN--AHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI 217 (471)
Q Consensus 156 ~~~kL~~la~~n~i~~~~--aH~A~~D~~~t~~l~k~i~~~~p~~~~~~l~~~~K~~v~~~l~~ 217 (471)
T Consensus 140 -~~sLDALCkRf~vDns~R~LHGAL~DA~LLAeVYl~ltGGq~~~~~~~~~~~~~~~~~~~~~~ 202 (246)
T TIGR01406 140 -RNSLDALCKRFKVDNSHRQLHGALLDAELLAEVYLALTGGQESLLEMLVASESGEAAKASKKA 202 (246)
T ss_pred -CCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf -664678774304250002134789999999999998628805777753122013456677754