HHsearch alignment for GI: 254780661 and conserved domain: cd05782
>cd05782 DNA_polB_like1_exo A subfamily of the 3'-5' exonuclease domain of family-B DNA polymerases. This subfamily is composed of uncharacterized bacterial family-B DNA polymerases. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are involved in metal binding and catalysis. The exonuclease domain of family-B DNA polymerases has a fundamental role in proofreading activity. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Family-B DNA polymerases are predominantly involved in DNA replication and DNA repair.
Probab=99.03 E-value=1.2e-08 Score=74.24 Aligned_cols=115 Identities=17% Similarity=0.108 Sum_probs=80.1
Q ss_pred CCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 89877260489999998389728040022662178887785789898579988996079997999999999951179659
Q gi|254780661|r 14 GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCI 93 (471)
Q Consensus 14 G~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~i~~~~~~~~~~~ 93 (471)
T Consensus 45 flp~~f~rIV~Is~~~~~~~~~~--------~~~~--------------------~~~~~~E~~ll~~F~~~i~~~~p~l 96 (208)
T cd05782 45 FLPLPFHKVVSISALYRDDDGGF--------LKVR--------------------TLDGADEKELLEDFFQLIEKKNPRL 96 (208)
T ss_pred CCHHHHCCEEEEEEEEEECCCCE--------EEEE--------------------ECCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 54466386279999999558977--------9984--------------------1799999999999999998659979
Q ss_pred EEEECHHHHHHHHHHHHHHHCCCCCCC-C---------CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 995055789999999998507853213-2---------568871001588886555653210024444454433108989
Q gi|254780661|r 94 IGYNNIRFDDYYSRNIFYRNFYDSYRW-S---------WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163 (471)
Q Consensus 94 ig~N~~~FD~~~lr~~~~r~~~~~y~~-~---------~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~~l 163 (471)
T Consensus 97 v~~Ng~~FD~P~l~~Ral~~gi~~p~~~~~~~~~~~y~~r~~~~H~Dl~d~l~~~--------------~~~~~~sLd~l 162 (208)
T cd05782 97 VSFNGRGFDLPVLHLRALIHGVSAPAYFDLGNKDWNYRNRYSERHLDLMDLLAFY--------------GARARASLDLL 162 (208)
T ss_pred EEECCCCCCHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHCC--------------CCCCCCCHHHH
T ss_conf 9636875758999999999198975554048874112488876313299998554--------------87577889999
Q ss_pred HHHHCCC
Q ss_conf 9871887
Q gi|254780661|r 164 ALANGIE 170 (471)
Q Consensus 164 a~~n~i~ 170 (471)
T Consensus 163 a~llG~p 169 (208)
T cd05782 163 AKLLGIP 169 (208)
T ss_pred HHHHCCC
T ss_conf 9983899