HHsearch alignment for GI: 254780661 and conserved domain: cd06129

>cd06129 RNaseD_like The RNase D-like group is composed of RNase D, WRN, and similar proteins. They contain a DEDDy-type, DnaQ-like, 3'-5' exonuclease domain that contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. RNase D is involved in the 3'-end processing of tRNA precursors. RNase D-like proteins in eukaryotes include yeast Rrp6p, human PM/Scl-100 and Drosophila melanogaster egalitarian (Egl) protein. WRN is a unique DNA helicase possessing exonuclease activity. Mutation in the WRN gene is implicated in Werner syndrome, a disease associated with premature aging and increased predisposition to cancer. Yeast Rrp6p and the human Polymyositis/scleroderma autoantigen 100kDa (PM/Scl-100) are exosome-associated proteins involved in the degradation and processing of prec
Probab=92.11  E-value=0.83  Score=23.92  Aligned_cols=109  Identities=13%  Similarity=0.021  Sum_probs=57.9

Q ss_pred             CCEEEEECCCCCCCCCCCE--EEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHH
Q ss_conf             8379997527889877260--48999999838972804002266217888778578989857998899607999799999
Q gi|254780661|r    3 NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSR   80 (471)
Q Consensus         3 ~~~v~~D~ETtG~~~~~~~--iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~   80 (471)
T Consensus        15 ~~vig~DtE~~~~~~~~~~v~LiQla---t~~------~~--~lid~~--------~~---~~~--------------~~   58 (159)
T cd06129          15 SIVVALDCEWIPLRLYYGEVTLIQIG---TTE------HA--FLFDVL--------SL---SAF--------------DG   58 (159)
T ss_pred             CEEEEEECCCCCCCCCCCCEEEEEEE---ECC------EE--EEEECC--------CC---CCC--------------HH
T ss_conf             80899979768987998978999994---599------68--999548--------88---767--------------79


Q ss_pred             HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf             99999511796599950557899999999985078532132568871001588886555653210024444454433108
Q gi|254780661|r   81 RIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL  160 (471)
Q Consensus        81 ~i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL  160 (471)
T Consensus        59 ~L~~lL~~~~i~Kvgh~-~~~D~~~L~~~~g~-----------~~~~~~Dt~~~~~~l--------~-----~~~~~~sL  113 (159)
T cd06129          59 GLKTVLENPSITKVGHG-CRGDLAKLLRDFGI-----------LLRNLFDTQAAHAIL--------G-----YPEEYWSL  113 (159)
T ss_pred             HHHHHHHCCCCEEEEEC-HHHHHHHHHHHCCC-----------CCCCCHHHHHHHHHH--------C-----CCCCCHHH
T ss_conf             99999829992499956-69999999675084-----------324303699999995--------8-----88431659


Q ss_pred             HHHHHH-HCCCCC
Q ss_conf             989987-188764
Q gi|254780661|r  161 QDLALA-NGIEHV  172 (471)
Q Consensus       161 ~~la~~-n~i~~~  172 (471)
T Consensus       114 ~~l~~~~lg~~ld  126 (159)
T cd06129         114 NSLVEQYLGPCLD  126 (159)
T ss_pred             HHHHHHHCCCCCC
T ss_conf             9999998087877