HHsearch alignment for GI: 254780661 and conserved domain: cd06129
>cd06129 RNaseD_like The RNase D-like group is composed of RNase D, WRN, and similar proteins. They contain a DEDDy-type, DnaQ-like, 3'-5' exonuclease domain that contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. RNase D is involved in the 3'-end processing of tRNA precursors. RNase D-like proteins in eukaryotes include yeast Rrp6p, human PM/Scl-100 and Drosophila melanogaster egalitarian (Egl) protein. WRN is a unique DNA helicase possessing exonuclease activity. Mutation in the WRN gene is implicated in Werner syndrome, a disease associated with premature aging and increased predisposition to cancer. Yeast Rrp6p and the human Polymyositis/scleroderma autoantigen 100kDa (PM/Scl-100) are exosome-associated proteins involved in the degradation and processing of prec
Probab=92.11 E-value=0.83 Score=23.92 Aligned_cols=109 Identities=13% Similarity=0.021 Sum_probs=57.9
Q ss_pred CCEEEEECCCCCCCCCCCE--EEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHH
Q ss_conf 8379997527889877260--48999999838972804002266217888778578989857998899607999799999
Q gi|254780661|r 3 NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSR 80 (471)
Q Consensus 3 ~~~v~~D~ETtG~~~~~~~--iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~ 80 (471)
T Consensus 15 ~~vig~DtE~~~~~~~~~~v~LiQla---t~~------~~--~lid~~--------~~---~~~--------------~~ 58 (159)
T cd06129 15 SIVVALDCEWIPLRLYYGEVTLIQIG---TTE------HA--FLFDVL--------SL---SAF--------------DG 58 (159)
T ss_pred CEEEEEECCCCCCCCCCCCEEEEEEE---ECC------EE--EEEECC--------CC---CCC--------------HH
T ss_conf 80899979768987998978999994---599------68--999548--------88---767--------------79
Q ss_pred HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf 99999511796599950557899999999985078532132568871001588886555653210024444454433108
Q gi|254780661|r 81 RIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160 (471)
Q Consensus 81 ~i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL 160 (471)
T Consensus 59 ~L~~lL~~~~i~Kvgh~-~~~D~~~L~~~~g~-----------~~~~~~Dt~~~~~~l--------~-----~~~~~~sL 113 (159)
T cd06129 59 GLKTVLENPSITKVGHG-CRGDLAKLLRDFGI-----------LLRNLFDTQAAHAIL--------G-----YPEEYWSL 113 (159)
T ss_pred HHHHHHHCCCCEEEEEC-HHHHHHHHHHHCCC-----------CCCCCHHHHHHHHHH--------C-----CCCCCHHH
T ss_conf 99999829992499956-69999999675084-----------324303699999995--------8-----88431659
Q ss_pred HHHHHH-HCCCCC
Q ss_conf 989987-188764
Q gi|254780661|r 161 QDLALA-NGIEHV 172 (471)
Q Consensus 161 ~~la~~-n~i~~~ 172 (471)
T Consensus 114 ~~l~~~~lg~~ld 126 (159)
T cd06129 114 NSLVEQYLGPCLD 126 (159)
T ss_pred HHHHHHHCCCCCC
T ss_conf 9999998087877