HHsearch alignment for GI: 254780661 and conserved domain: cd06141

>cd06141 WRN_exo WRN is a unique RecQ DNA helicase exhibiting an exonuclease activity. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. Mutations in the WRN gene cause Werner syndrome, an autosomal recessive disorder associated with premature aging and increased susceptibility to cancer and type II diabetes. WRN interacts with key proteins involved in DNA replication, recombination, and repair. It is believed to maintain genomic stability and life span by participating in DNA processes. WRN is stimulated by Ku70/80, an important regulator of genomic stability.
Probab=91.08  E-value=1.1  Score=23.23  Aligned_cols=86  Identities=22%  Similarity=0.213  Sum_probs=50.8

Q ss_pred             HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             99999951179659995055789999999998507853213256887100158888655565321002444445443310
Q gi|254780661|r   80 RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK  159 (471)
Q Consensus        80 ~~i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~k  159 (471)
T Consensus        63 ~~L~~lL~~~~i~Kvg~~~-~~D~~~L~~~~g~~-----------~~~~~Dl~~~a~~~---~~----------~~~~~s  117 (168)
T cd06141          63 PSLKQLLEDPSILKVGVGI-KGDARKLRRDFGIE-----------VRGVVDLSHLAKRV---GP----------RRKLVS  117 (168)
T ss_pred             HHHHHHHCCCCEEEEEEEE-HHHHHHHHHHCCCC-----------CCCEEEHHHHHHHH---CC----------CCCCCC
T ss_conf             9999997599807999631-88999998744502-----------48765699999985---77----------777632


Q ss_pred             HHHHHHH-HCCCC--------CC----------CCHHHHHHHHHHHHHHH
Q ss_conf             8989987-18876--------43----------10133318999999999
Q gi|254780661|r  160 LQDLALA-NGIEH--------VN----------AHDAKADVYATLALVWL  190 (471)
Q Consensus       160 L~~la~~-n~i~~--------~~----------aH~A~~D~~~t~~l~k~  190 (471)
T Consensus       118 L~~l~~~~lg~~l~K~k~~q~SdW~~rpLs~~Qi~YAA~Da~~~~~l~~~  167 (168)
T cd06141         118 LARLVEEVLGLPLSKDKKVRCSNWEARPLSKEQILYAATDAYASLELYRK  167 (168)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999998396215466520388899999999999999999999999973