HHsearch alignment for GI: 254780661 and conserved domain: cd06141
>cd06141 WRN_exo WRN is a unique RecQ DNA helicase exhibiting an exonuclease activity. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. Mutations in the WRN gene cause Werner syndrome, an autosomal recessive disorder associated with premature aging and increased susceptibility to cancer and type II diabetes. WRN interacts with key proteins involved in DNA replication, recombination, and repair. It is believed to maintain genomic stability and life span by participating in DNA processes. WRN is stimulated by Ku70/80, an important regulator of genomic stability.
Probab=91.08 E-value=1.1 Score=23.23 Aligned_cols=86 Identities=22% Similarity=0.213 Sum_probs=50.8
Q ss_pred HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999951179659995055789999999998507853213256887100158888655565321002444445443310
Q gi|254780661|r 80 RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159 (471)
Q Consensus 80 ~~i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~k 159 (471)
T Consensus 63 ~~L~~lL~~~~i~Kvg~~~-~~D~~~L~~~~g~~-----------~~~~~Dl~~~a~~~---~~----------~~~~~s 117 (168)
T cd06141 63 PSLKQLLEDPSILKVGVGI-KGDARKLRRDFGIE-----------VRGVVDLSHLAKRV---GP----------RRKLVS 117 (168)
T ss_pred HHHHHHHCCCCEEEEEEEE-HHHHHHHHHHCCCC-----------CCCEEEHHHHHHHH---CC----------CCCCCC
T ss_conf 9999997599807999631-88999998744502-----------48765699999985---77----------777632
Q ss_pred HHHHHHH-HCCCC--------CC----------CCHHHHHHHHHHHHHHH
Q ss_conf 8989987-18876--------43----------10133318999999999
Q gi|254780661|r 160 LQDLALA-NGIEH--------VN----------AHDAKADVYATLALVWL 190 (471)
Q Consensus 160 L~~la~~-n~i~~--------~~----------aH~A~~D~~~t~~l~k~ 190 (471)
T Consensus 118 L~~l~~~~lg~~l~K~k~~q~SdW~~rpLs~~Qi~YAA~Da~~~~~l~~~ 167 (168)
T cd06141 118 LARLVEEVLGLPLSKDKKVRCSNWEARPLSKEQILYAATDAYASLELYRK 167 (168)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998396215466520388899999999999999999999999973