HHsearch alignment for GI: 254780661 and conserved domain: cd06149
>cd06149 ISG20 Interferon (IFN) Stimulated Gene product of 20 kDa (ISG20) is an IFN-induced antiviral exonuclease with a strong preference for single-stranded RNA and minor activity towards single-stranded DNA. It was also independently identified by its response to estrogen and was called HEM45 (human estrogen regulated transcript). ISG20 is a DEDDh-type DnaQ-like 3'-5' exonuclease containing three conserved sequence motifs termed ExoI, ExoII and ExoIII with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. ISG20 may be a major effector of innate immunity against pathogens including viruses, bacteria, and parasites. It is located in promyelocytic leukemia (PML) nuclear bodies, sites for oncogenic DNA viral transcription and replication. It may carry out its function by degrading viral RNAs as part of the IFN-regulated antiviral r
Probab=99.09 E-value=1.6e-09 Score=79.92 Aligned_cols=151 Identities=17% Similarity=0.107 Sum_probs=99.8
Q ss_pred EEEECCCCCCCCC--CCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHHH
Q ss_conf 9997527889877--26048999999838972804002266217888778578989857998899607999799999999
Q gi|254780661|r 6 VIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIH 83 (471)
Q Consensus 6 v~~D~ETtG~~~~--~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~i~ 83 (471)
T Consensus 1 vAlDCEMv~t~~g~~~~~LaRvsvV--d~~G~vl--~D~-~VkP~~~--V~dy~T~~SGIt~~~l~~a~-~~~~~~~~l~ 72 (157)
T cd06149 1 VAIDCEMVGTGPGGRESELARCSIV--NYHGDVL--YDK-YIRPEGP--VTDYRTRWSGIRRQHLVNAT-PFAVAQKEIL 72 (157)
T ss_pred CEEECEEEEECCCCCEEEEEEEEEE--ECCCCEE--EEE-EECCCCC--CCCCEEECCCCCHHHHCCCC-CHHHHHHHHH
T ss_conf 9793653427489984689999999--2789898--674-3388987--78636562678888957998-4999999999
Q ss_pred HHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 99511796599950557899999999985078532132568871001588886555653210024444454433108989
Q gi|254780661|r 84 QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163 (471)
Q Consensus 84 ~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~~l 163 (471)
T Consensus 73 ~~l~--~~IlVGH~-L~nDL~aL~l~-----h~~~--------~i~DT~~~-----~~~~~~~~----~p~~~~~sLk~L 127 (157)
T cd06149 73 KILK--GKVVVGHA-IHNDFKALKYF-----HPKH--------MTRDTSTI-----PLLNRKAG----FPENCRVSLKVL 127 (157)
T ss_pred HHHC--CCEEEEEC-CHHHHHHHHCC-----CCCC--------CEEECCCC-----EEHHHHCC----CCCCCCHHHHHH
T ss_conf 9716--98899826-07669886033-----8987--------26777111-----00133248----987668759999
Q ss_pred HHHH---CCCCCC-CCHHHHHHHHHHHHHH
Q ss_conf 9871---887643-1013331899999999
Q gi|254780661|r 164 ALAN---GIEHVN-AHDAKADVYATLALVW 189 (471)
Q Consensus 164 a~~n---~i~~~~-aH~A~~D~~~t~~l~k 189 (471)
T Consensus 128 ~~~~L~~~IQ~~~~gHds~EDA~aa~~L~k 157 (157)
T cd06149 128 AKRLLHRDIQVGRQGHSSVEDARATMELYK 157 (157)
T ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 999848502599988080999999999859