HHsearch alignment for GI: 254780661 and conserved domain: pfam03104
>pfam03104 DNA_pol_B_exo DNA polymerase family B, exonuclease domain. This domain has 3' to 5' exonuclease activity and adopts a ribonuclease H type fold.
Probab=98.13 E-value=1.5e-05 Score=54.37 Aligned_cols=97 Identities=22% Similarity=0.138 Sum_probs=61.0
Q ss_pred CEEEEECCCCCC-----CCCCCEEEEEEEEEECCC-CEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHH
Q ss_conf 379997527889-----877260489999998389-72804002266217888778578989857998899607999799
Q gi|254780661|r 4 HFVIYDYETFGR-----DVALDRPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAE 77 (471)
Q Consensus 4 ~~v~~D~ETtG~-----~~~~~~iiq~~~i~~d~~-~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e 77 (471)
T Consensus 87 rilsfDIEc~~~~g~FP~~~~d~IiqIs~~~~~~g~~~~~~~~-~-~t-l~~~-~~i~~-----~~---~V~~f-~~E~~ 153 (254)
T pfam03104 87 RVLSFDIECTSLKGKFPENEKDPIIQISCMLYREGEPDPIEDK-L-FT-LKSC-ALIEI-----GG---EVYIF-PSEKE 153 (254)
T ss_pred EEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEE-E-EE-ECCC-CCCCC-----CC---EEEEE-CCHHH
T ss_conf 3999988958889999987898389999898856789863206-9-98-0787-76778-----97---79995-99999
Q ss_pred HHHHHHHHHHCCCC-EEEEEECHHHHHHHHHHHHHHH
Q ss_conf 99999999511796-5999505578999999999850
Q gi|254780661|r 78 FSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRN 113 (471)
Q Consensus 78 ~~~~i~~~~~~~~~-~~ig~N~~~FD~~~lr~~~~r~ 113 (471)
T Consensus 154 ll~~f~~~i~~~dpdii~gyNi~~FD~~yl~~Ra~~l 190 (254)
T pfam03104 154 LLRRFFEFIRQYDPDIITGYNGDNFDWPYILNRAKIL 190 (254)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHH
T ss_conf 9999999987519989996678778889999999996