HHsearch alignment for GI: 254780661 and conserved domain: pfam03104

>pfam03104 DNA_pol_B_exo DNA polymerase family B, exonuclease domain. This domain has 3' to 5' exonuclease activity and adopts a ribonuclease H type fold.
Probab=98.13  E-value=1.5e-05  Score=54.37  Aligned_cols=97  Identities=22%  Similarity=0.138  Sum_probs=61.0

Q ss_pred             CEEEEECCCCCC-----CCCCCEEEEEEEEEECCC-CEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHH
Q ss_conf             379997527889-----877260489999998389-72804002266217888778578989857998899607999799
Q gi|254780661|r    4 HFVIYDYETFGR-----DVALDRPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAE   77 (471)
Q Consensus         4 ~~v~~D~ETtG~-----~~~~~~iiq~~~i~~d~~-~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e   77 (471)
T Consensus        87 rilsfDIEc~~~~g~FP~~~~d~IiqIs~~~~~~g~~~~~~~~-~-~t-l~~~-~~i~~-----~~---~V~~f-~~E~~  153 (254)
T pfam03104        87 RVLSFDIECTSLKGKFPENEKDPIIQISCMLYREGEPDPIEDK-L-FT-LKSC-ALIEI-----GG---EVYIF-PSEKE  153 (254)
T ss_pred             EEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEE-E-EE-ECCC-CCCCC-----CC---EEEEE-CCHHH
T ss_conf             3999988958889999987898389999898856789863206-9-98-0787-76778-----97---79995-99999


Q ss_pred             HHHHHHHHHHCCCC-EEEEEECHHHHHHHHHHHHHHH
Q ss_conf             99999999511796-5999505578999999999850
Q gi|254780661|r   78 FSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRN  113 (471)
Q Consensus        78 ~~~~i~~~~~~~~~-~~ig~N~~~FD~~~lr~~~~r~  113 (471)
T Consensus       154 ll~~f~~~i~~~dpdii~gyNi~~FD~~yl~~Ra~~l  190 (254)
T pfam03104       154 LLRRFFEFIRQYDPDIITGYNGDNFDWPYILNRAKIL  190 (254)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHH
T ss_conf             9999999987519989996678778889999999996