HHsearch results for GI: 254780661 and protein with PDBid: 1qht_A
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymerase, POL alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 3a2f_A* 2jgu_A* 1d5a_A
Probab=98.17 E-value=0.00012 Score=47.12 Aligned_cols=151 Identities=17% Similarity=0.092 Sum_probs=91.7
Q ss_pred CEEEEECCCCC---CCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHH
Q ss_conf 37999752788---987726048999999838972804002266217888778578989857998899607999799999
Q gi|254780661|r 4 HFVIYDYETFG---RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSR 80 (471)
Q Consensus 4 ~~v~~D~ETtG---~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~ 80 (471)
..+.||+||.+ .++..|.|++|+.. |..... .+.++. +..+. +..- .+|.+++.
T Consensus 136 ~i~s~DIE~~~~~~~~~~~d~I~~Is~~--~~~~~~-----vi~~~~----~d~~~-----------v~~~-~~E~~LL~ 192 (775)
T 1qht_A 136 TMLAFAIATLYHEGEEFGTGPILMISYA--DGSEAR-----VITWKK----IDLPY-----------VDVV-STEKEMIK 192 (775)
T ss_dssp CEEEEEEEECCCTTCCTTCSCEEEEEEE--CSSCEE-----EEESSC----CCCSS-----------EEEC-SCHHHHHH
T ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEEE--CCCCCE-----EEECCC----CCCCE-----------EEEC-CCHHHHHH
T ss_conf 6999998757876888777988999996--389707-----996778----78762-----------7871-99999999
Q ss_pred HHHHHHHCCCC-EEEEEECHHHHHHHHHHHHHHHCCCCCC----------------CCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999511796-5999505578999999999850785321----------------325688710015888865556532
Q gi|254780661|r 81 RIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYR----------------WSWDNGNSRWDLLDVMRAIYAFSP 143 (471)
Q Consensus 81 ~i~~~~~~~~~-~~ig~N~~~FD~~~lr~~~~r~~~~~y~----------------~~~~~~~~~~D~l~~~~~~~~~~p 143 (471)
.+.+++...++ +++|||+.+||.++|..=.-+.+.+.-. .....|.-.+|++..++..+
T Consensus 193 ~F~~~i~~~dPDII~GyN~~~FDlpyL~~R~~~l~i~~~~~r~~~~~~~~~~~~~~~~~i~Gri~iDl~~~~~~~~---- 268 (775)
T 1qht_A 193 RFLRVVREKDPDVLITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTI---- 268 (775)
T ss_dssp HHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHS----
T ss_pred HHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCEEECCCEEEEEECCEEEEEHHHHHHHHC----
T ss_conf 9999998719988987088775299999999982981010356887654344866899887989998399997646----
Q ss_pred HHCCCCCCCCCCCCCCHHHHHHHHC-CCCCC-------------------CCHHHHHHHHHHHHHHHH
Q ss_conf 1002444445443310898998718-87643-------------------101333189999999999
Q gi|254780661|r 144 DGIQWPSRDDGATSFKLQDLALANG-IEHVN-------------------AHDAKADVYATLALVWLI 191 (471)
Q Consensus 144 ~~~~~~~~~~~~~~~kL~~la~~n~-i~~~~-------------------aH~A~~D~~~t~~l~k~i 191 (471)
.-+|++|+.+|.... ....+ +.=.+.||..+..|+..+
T Consensus 269 ----------~l~sy~L~~Va~~~lg~~K~d~~~~~i~~~~~~~~~~~~~~~Y~~~D~~lv~~L~~kl 326 (775)
T 1qht_A 269 ----------NLPTYTLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREF 326 (775)
T ss_dssp ----------CCSCCCHHHHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------CCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----------6766668999999849975556999999987526329999999699999999998878