HHsearch results for GI: 254780661 and protein with PDBid: 1s5j_A

>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=97.43  E-value=0.00086  Score=41.71  Aligned_cols=167  Identities=20%  Similarity=0.146  Sum_probs=84.9

Q ss_pred             CEEEEECCCC----CC--CCCCC--EEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCH
Q ss_conf             3799975278----89--87726--0489999998389728040022662178887785789898579988996079997
Q gi|254780661|r    4 HFVIYDYETF----GR--DVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVE   75 (471)
Q Consensus         4 ~~v~~D~ETt----G~--~~~~~--~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~   75 (471)
                      ..+-||+||.    |.  +|..+  .||++|..  +.++..  .+.++ .+  .... . ....+-|++   +..- .+|
T Consensus       191 rilsfDIE~~s~~~~~fPdp~~~~~~ii~I~~~--~~~~~~--~~~~~-~~--~~~~-~-~~~~~~~~~---v~~f-~sE  257 (847)
T 1s5j_A          191 KRVAIDIEVYTPVKGRIPDSQKAEFPIISIALA--GSDGLK--KVLVL-NR--NDVN-E-GSVKLDGIS---VERF-NTE  257 (847)
T ss_dssp             CEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEE--ETTSCE--EEEEE-CS--SCCC-C-CCEEETTEE---EEEE-SSH
T ss_pred             EEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEE--ECCCCE--EEEEE-EC--CCCC-C-CCCCCCCCE---EEEE-CCH
T ss_conf             499999887888889998943477428999999--568998--99998-16--7777-6-654579958---9998-989


Q ss_pred             HHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCC---------CCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             999999999951179659995055789999999998507853213256---------88710015888865556532100
Q gi|254780661|r   76 AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD---------NGNSRWDLLDVMRAIYAFSPDGI  146 (471)
Q Consensus        76 ~e~~~~i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~---------~~~~~~D~l~~~~~~~~~~p~~~  146 (471)
                      .+++..+.+++.++ .+++|||+.+||.++|..=.-+.+..+......         .+...+|+...+..-      ..
T Consensus       258 keLL~~F~~~i~dp-DII~GyNi~~FDlpYL~~Ra~~lg~~~~~~~~~~~g~~~~~~~~~~~~d~~~~~~~d------~~  330 (847)
T 1s5j_A          258 YELLGRFFDILLEY-PIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNK------AV  330 (847)
T ss_dssp             HHHHHHHHHHHTTC-SEEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSH------HH
T ss_pred             HHHHHHHHHHCCCC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEECCCCEEEEEEEEEEEEEEEEEHHH------HH
T ss_conf             99999999742289-979883105665899999999809983204253057323578620688653357598------99


Q ss_pred             CCCCCCCCCCCCCHHHHHHH-HCCCCCC-------------CCHHHHHHHHHHHHHHH
Q ss_conf             24444454433108989987-1887643-------------10133318999999999
Q gi|254780661|r  147 QWPSRDDGATSFKLQDLALA-NGIEHVN-------------AHDAKADVYATLALVWL  190 (471)
Q Consensus       147 ~~~~~~~~~~~~kL~~la~~-n~i~~~~-------------aH~A~~D~~~t~~l~k~  190 (471)
                      ..-.....-+||+|+.+|+. .|..-.+             +.-.+.||..+..|..+
T Consensus       331 ~~~~~~~~l~sy~L~~Va~~~Lg~~K~~~~~~~~~~d~~~l~~Y~~~D~~l~~~L~~~  388 (847)
T 1s5j_A          331 RNYAFEGKYNEYNLDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQLTTF  388 (847)
T ss_dssp             HHHTSTTCCSSCSHHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHTTTH
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9987641302077999999983888422222020100688988875556888899987