HHsearch results for GI: 254780661 and protein with PDBid: 1uoc_A
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=98.48 E-value=5.5e-06 Score=55.83 Aligned_cols=189 Identities=18% Similarity=0.171 Sum_probs=111.0
Q ss_pred CCEEEEECCCCCCCCC-----CC----------------EEEEEEEEEECCCCEECC------EEEEEEECCCCCCCCCH
Q ss_conf 8379997527889877-----26----------------048999999838972804------00226621788877857
Q gi|254780661|r 3 NHFVIYDYETFGRDVA-----LD----------------RPAQFAGVRVDRQWEKIE------STEVFFCKPADDYLPDP 55 (471)
Q Consensus 3 ~~~v~~D~ETtG~~~~-----~~----------------~iiq~~~i~~d~~~~~~~------~~~~~~~~~~~~~~p~p 55 (471)
-.||-.|+|-||+... .+ .|||+|.-..+.+++... +|+ +..-+..+. -++
T Consensus 38 ~~fVAiD~Ef~Gi~~~~~~~~~~t~~~rY~~lk~nv~~~~iiQlGlt~f~~~g~~~~~~~~~w~FN-f~~~~~~~~-~~~ 115 (289)
T 1uoc_A 38 YNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDANGNKPDNGPSTWQFN-FEFDPKKEI-MST 115 (289)
T ss_dssp SCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEECTTCCCCSSSCSEEEEE-BCCCTTCCC-CCH
T ss_pred CCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCEEEEEE-EECCCCCCC-CCH
T ss_conf 998999625178457888666899999999999866436324699998704887688871478997-744862023-257
Q ss_pred HH---HHHHCCCHHHHHHCCCCHHHHHHHHHH--HHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCC------C
Q ss_conf 89---898579988996079997999999999--951179659995055789999999998507853213256------8
Q gi|254780661|r 56 EA---VFITGITPQKALRDGVVEAEFSRRIHQ--FFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD------N 124 (471)
Q Consensus 56 ~a---~~v~git~~~~~~~~~~~~e~~~~i~~--~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~------~ 124 (471)
.+ +.-+|+.=....+.|++.....+.+.. .+.+.+..+||||+ .+|..++-..|+-.-+|.-..... -
T Consensus 116 ~Si~fL~~~G~DFnk~~~~GI~~~~f~~~~~~s~l~~~~~~~wv~f~g-~yD~~yl~k~l~~~~LP~~~~~F~~~~~~~F 194 (289)
T 1uoc_A 116 ESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHA-AYDLGFLINILMNDSMPNNKEDFEWWVHQYM 194 (289)
T ss_dssp HHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTSSCSSCTTSEEEESST-THHHHHHHHHHTTSCCCSSHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHCCHHHCCCCEEEEECC-HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC
T ss_conf 789999985998689997199888888998750044247862896043-5579999999718989999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8710015888865556532100244444544331089899871887-6431013331899999999998642
Q gi|254780661|r 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVYATLALVWLIREKK 195 (471)
Q Consensus 125 ~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~~la~~n~i~-~~~aH~A~~D~~~t~~l~k~i~~~~ 195 (471)
+ ...|+=-+++.+..+..............-...|+.+|+..|+. .+.+|.|-+|+..|..++-.+++..
T Consensus 195 p-~iyDtK~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~va~~l~v~r~g~~HeAG~DS~lTg~~F~~l~~~~ 265 (289)
T 1uoc_A 195 P-NFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSIFTTTGGQSLLMLLSFCQLSKLS 265 (289)
T ss_dssp S-SEEEHHHHHHHHTTTCC-------------CCSHHHHHHHTTCCCCGGGGSHHHHHHHHHHHHHHHHHHT
T ss_pred C-CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 6-2613999998621335754343322101234888899987299877888660789999999999999987