HHsearch results for GI: 254780661 and protein with PDBid: 2a1r_A
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase/RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=97.32 E-value=0.008 Score=35.49 Aligned_cols=73 Identities=21% Similarity=0.220 Sum_probs=40.2
Q ss_pred CCEEEEECCCCCCCCC---------CC----------------EEEEEEEEEE--CCC-CEECCEEEEEEECCCCC----
Q ss_conf 8379997527889877---------26----------------0489999998--389-72804002266217888----
Q gi|254780661|r 3 NHFVIYDYETFGRDVA---------LD----------------RPAQFAGVRV--DRQ-WEKIESTEVFFCKPADD---- 50 (471)
Q Consensus 3 ~~~v~~D~ETtG~~~~---------~~----------------~iiq~~~i~~--d~~-~~~~~~~~~~~~~~~~~---- 50 (471)
-.||-+|+|-||+... +| .|||+|.-+. |.. ..-.-+..++++-|.+.
T Consensus 22 a~FiAiD~EfsGl~~~~~~~~~~~~~ds~eerY~~~~~~a~~~~iiQ~Gl~~f~~~~~~~~~~~~~fNf~lfp~~~~~~~ 101 (430)
T 2a1r_A 22 ADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRSS 101 (430)
T ss_dssp CSEEEEEEEESCSCSSSCC-----CCCCHHHHHHHHHHHTTTBCEEEEEEEEEEEETTTTEEEEEEEEEEBCCCCSSSSS
T ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCEEEEEEEEEECCCCCCCCC
T ss_conf 99899931146877778765556667999999999998775277017999857776888861366667884451003567
Q ss_pred ----CCCCHHH---HHHHCCCHHHHHHCCCCH
Q ss_conf ----7785789---898579988996079997
Q gi|254780661|r 51 ----YLPDPEA---VFITGITPQKALRDGVVE 75 (471)
Q Consensus 51 ----~~p~p~a---~~v~git~~~~~~~~~~~ 75 (471)
...++.+ |.-||..=......|++.
T Consensus 102 ~~~~f~~~~~sl~FL~~~gfDFnk~~~~GI~y 133 (430)
T 2a1r_A 102 PDVKFVCQSSSIDFLASQGFDFNKVFRNGIPY 133 (430)
T ss_dssp CCCEEEEEHHHHHHHHHTTCCHHHHHTTCBCB
T ss_pred CCHHHEECHHHHHHHHHCCCCHHHHHHCCCCC
T ss_conf 44310325778999998598967898759853