HHsearch results for GI: 254780661 and protein with PDBid: 2kfn_A
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=98.46 E-value=5e-06 Score=56.09 Aligned_cols=101 Identities=13% Similarity=0.119 Sum_probs=64.7
Q ss_pred CCEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHH
Q ss_conf 83799975278898772604899999983897280400226621788877857898985799889960799979999999
Q gi|254780661|r 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRI 82 (471)
Q Consensus 3 ~~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~i 82 (471)
...+.||+||||+++..++|+-++ +.++. +. .+++-+.... .. . ....+.-++...+
T Consensus 26 ~~~~a~D~ETt~ld~~~~~ivgis-~s~~~-~~------~~yipi~h~~-~~---------~-----~~~~~~~~vl~~L 82 (605)
T 2kfn_A 26 APVFAFDTETDSLDNISANLVGLS-FAIEP-GV------AAYIPVAHDY-LD---------A-----PDQISRERALELL 82 (605)
T ss_dssp SSSEEEEEEESCSCTTTCCEEEEE-EEEET-TE------EEEEECCCCS-TT---------C-----CCCCCHHHHHHHH
T ss_pred CCEEEEEEECCCCCCCCCEEEEEE-EECCC-CE------EEEEEECCCC-CC---------C-----CCCCCHHHHHHHH
T ss_conf 994999831799983657499999-98249-85------9999822666-77---------7-----5558999999999
Q ss_pred HHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 99951179659995055789999999998507853213256887100158888655
Q gi|254780661|r 83 HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAI 138 (471)
Q Consensus 83 ~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~ 138 (471)
.++|.+.+...|||| +.||..+|+ ++++++ .+..+|++-..+++
T Consensus 83 k~~l~~~~i~kV~HN-akFD~~~L~----~~Gi~l-------~~~~~DTmiaa~ll 126 (605)
T 2kfn_A 83 KPLLEDEKALKVGQN-LKYDRGILA----NYGIEL-------RGIAFDTMLESYIL 126 (605)
T ss_dssp HHHHTCTTSCEEESS-HHHHHHHHH----TTTCCC-------CCEEEEHHHHHHHH
T ss_pred HHHHHCCCCCEEEEC-HHHHHHHHH----HCCCCC-------CCCHHHHHHHHHHH
T ss_conf 999818999799972-699999999----779988-------98402077787772