HHsearch results for GI: 254780661 and protein with PDBid: 2p1j_A
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=99.96 E-value=2.5e-27 Score=193.04 Aligned_cols=167 Identities=20% Similarity=0.247 Sum_probs=137.6
Q ss_pred CEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHHH
Q ss_conf 37999752788987726048999999838972804002266217888778578989857998899607999799999999
Q gi|254780661|r 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIH 83 (471)
Q Consensus 4 ~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~i~ 83 (471)
.||++|+||||++|..++|||+|+|.++ +++++++++. +|+| +..+++++..+|||+++++.+ +.+..+++.++.
T Consensus 13 ~yvviD~ETTGl~~~~~~Iieig~v~~~-~~~i~~~~~~-~v~p--~~~~~~~~~~i~gi~~~~~~~-~~~~~~~~~~~~ 87 (186)
T 2p1j_A 13 TFVVLDFETTGLDPQVDEIIEIGAVKIQ-GGQIVDEYHT-LIKP--SREISRKSSEITGITQEMLEN-KRSIEEVLPEFL 87 (186)
T ss_dssp CEEEEEEEESCSCTTTCCEEEEEEEEEE-TTEEEEEEEE-ECBC--SSCCCHHHHHHHCCCHHHHTT-CCBHHHHHHHHH
T ss_pred CEEEEEEECCCCCCCCCEEEEEEEEEEE-CCEEEEEEEE-EECC--CCCCCHHHHHHCCCCHHHCCC-CCHHHHHHHHHH
T ss_conf 4999998728999999868999999998-9968778899-8668--876898999870987565002-121999999999
Q ss_pred HHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 99511796599950557899999999985078532132568871001588886555653210024444454433108989
Q gi|254780661|r 84 QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163 (471)
Q Consensus 84 ~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~~l 163 (471)
+++. +.++|||| ++||..||+..+.+.+.+++. +..+|++.+.+... +.++++|+.+
T Consensus 88 ~~~~--~~~~v~hn-~~fD~~~L~~~~~~~~~~~~~------~~~id~~~~~~~~~--------------~~~~~~L~~l 144 (186)
T 2p1j_A 88 GFLE--DSIIVAHN-ANFDYRFLRLWIKKVMGLDWE------RPYIDTLALAKSLL--------------KLRSYSLDSV 144 (186)
T ss_dssp HHSS--SCEEEETT-HHHHHHHHHHHHHHHHCCCCC------CCEEEHHHHHHHHT--------------CCSCCSHHHH
T ss_pred HHCC--CCEEEEEC-HHHHHHHHHHHHHHHCCCCCC------CCCCCHHHHHHHHC--------------CCCCCCHHHH
T ss_conf 7469--99899977-898799999999984498766------76202099999865--------------6789889999
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98718876431013331899999999998642268
Q gi|254780661|r 164 ALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198 (471)
Q Consensus 164 a~~n~i~~~~aH~A~~D~~~t~~l~k~i~~~~p~~ 198 (471)
|+.+|++.+++|+|++||.+|++|+..+.++..+-
T Consensus 145 ~~~~gi~~~~~H~Al~Da~~t~~l~~~l~~~~k~~ 179 (186)
T 2p1j_A 145 VEKLGLGPFRHHRALDDARVTAQVFLRFVEMMKKE 179 (186)
T ss_dssp HHHTTCCSTTCCHHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99869998989788999999999999999999824