HHsearch results for GI: 254780661 and protein with PDBid: 2py5_A
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=94.84 E-value=0.083 Score=28.97 Aligned_cols=152 Identities=13% Similarity=0.080 Sum_probs=74.6
Q ss_pred CCCCEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHH
Q ss_conf 98837999752788987726048999999838972804002266217888778578989857998899607999799999
Q gi|254780661|r 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSR 80 (471)
Q Consensus 1 m~~~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~ 80 (471)
|+.+..++|+||+ .+....++--+|.... ++. ..+.. . . . +.
T Consensus 4 ~~~~~~~~D~Et~-~~~~~~~~~~~~~~~~---~~~-~~~~~--~---~------------------------~----l~ 45 (575)
T 2py5_A 4 MPRKMYSCAFETT-TKVEDCRVWAYGYMNI---EDH-SEYKI--G---N------------------------S----LD 45 (575)
T ss_dssp -CCCEEEEEEEEC-CBTTBCCEEEEEEEES---SCT-TCEEE--E---S------------------------C----HH
T ss_pred CCCEEEEEEEEEC-CCCCCCEEEEEEEEEC---CCC-EEEEH--H---H------------------------H----HH
T ss_conf 7651799999706-8977731479999717---984-07770--8---9------------------------9----99
Q ss_pred HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH----HH---HHHCCCCCCC-
Q ss_conf 999995117965999505578999999999850785321325688710015888865556----53---2100244444-
Q gi|254780661|r 81 RIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYA----FS---PDGIQWPSRD- 152 (471)
Q Consensus 81 ~i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~----~~---p~~~~~~~~~- 152 (471)
++.+.+....+.+++|| ++||..|+...+.++..+..... ..+.+--.......... .. ...+.+...+
T Consensus 46 ~f~~~i~~~dpdi~~hN-l~FD~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~DS 122 (575)
T 2py5_A 46 EFMAWVLKVQADLYFHN-LKFAGAFIINWLERNGFKWSADG--LPNTYNTIISRMGQWYMIDICLGYKGKRKIHTVIYDS 122 (575)
T ss_dssp HHHHHHHHHCCEEEETT-HHHHHHHHHHHHHHTTCEECTTC--CTTEEEEEEBTTCCEEEEEEEEEEETTEEEEEEEEEH
T ss_pred HHHHHHHHCCCCEEEEC-CCCCHHHHHHHHHHCCCCCEECC--CCCCCCCEEEECCEEEEEEEEEEECCEEEEEEEEEEC
T ss_conf 99999986599799988-75799999999997098620324--6766652267354579998999603301368999842
Q ss_pred CCCCCCCHHHHHHHHCCCCCC---CCH----------------HHHHHHHHHHHHHHHHH
Q ss_conf 544331089899871887643---101----------------33318999999999986
Q gi|254780661|r 153 DGATSFKLQDLALANGIEHVN---AHD----------------AKADVYATLALVWLIRE 193 (471)
Q Consensus 153 ~~~~~~kL~~la~~n~i~~~~---aH~----------------A~~D~~~t~~l~k~i~~ 193 (471)
-.-.+++|+.+|..++..... .|. ...||..+.+++.....
T Consensus 123 ~~l~~~SL~~va~~f~l~~~K~~~~~~~~~~~~~~~~~~~~~Y~~~Dv~ll~~i~~~~~~ 182 (575)
T 2py5_A 123 LKKLPFPVKKIAKDFKLTVLKGDIDYHKERPVGYKITPEEYAYIKNDIQIIAEALLIQFK 182 (575)
T ss_dssp HHHSCSCHHHHHHHTTCCCCSSCCCTTSCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 144844799999873745455647744410223323298999999999999999999999