HHsearch results for GI: 254780661 and protein with PDBid: 3k59_A
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli k-12} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=98.04 E-value=0.00015 Score=46.67 Aligned_cols=154 Identities=14% Similarity=0.124 Sum_probs=88.3
Q ss_pred CEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHHH
Q ss_conf 37999752788987726048999999838972804002266217888778578989857998899607999799999999
Q gi|254780661|r 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIH 83 (471)
Q Consensus 4 ~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~i~ 83 (471)
+.+-||+||++. ++|..+|.- +. +.. ..+...+.... .. ..+. .+..-+ +|.+++..+.
T Consensus 154 ~vlsfDIE~~~~----~~i~~I~~~--~~-~~~----~v~~~~~~~~~-~~-----~~~~---~v~~~~-sE~~LL~~F~ 212 (786)
T 3k59_A 154 KWVSIDIETTRH----GELYCIGLE--GC-GQR----IVYMLGPENGD-AS-----SLDF---ELEYVA-SRPQLLEKLN 212 (786)
T ss_dssp CEEEEEEEECTT----SCEEEEEEE--ET-TEE----EEEEESSCCSC-CT-----TCSS---EEEEES-SHHHHHHHHH
T ss_pred EEEEEEEEECCC----CCEEEEEEE--CC-CCC----EEEEEECCCCC-CC-----CCCE---EEEEEC-CHHHHHHHHH
T ss_conf 489998897588----988999985--69-983----89999467777-77-----7753---899969-9999999999
Q ss_pred HHHHCCCC-EEEEEECHHHHHHHHHHHHHHHCCCCCC-------------------CCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99511796-5999505578999999999850785321-------------------325688710015888865556532
Q gi|254780661|r 84 QFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYR-------------------WSWDNGNSRWDLLDVMRAIYAFSP 143 (471)
Q Consensus 84 ~~~~~~~~-~~ig~N~~~FD~~~lr~~~~r~~~~~y~-------------------~~~~~~~~~~D~l~~~~~~~~~~p 143 (471)
.++...+| +++|||+.+||.++|..-.-+++.+.-. .....|.-.+|++..++...
T Consensus 213 ~~i~~~DPDII~GyNi~~FDlpyL~~Ra~~~~i~~~lgr~~~~~~~~~~~~~~~~~~~~i~Gr~~iD~~~~~~~~~---- 288 (786)
T 3k59_A 213 AWFANYDPDVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAF---- 288 (786)
T ss_dssp HHHHHHCCSEEEESSTTTTHHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHHHHTT----
T ss_pred HHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEHHHHHHHHHHH----
T ss_conf 9999709999997288686799999999981897302676750230013434653787107688089999999975----
Q ss_pred HHCCCCCCCCCCCCCCHHHHHHHHCCCCCC---CCH-------------------HHHHHHHHHHHHHHH
Q ss_conf 100244444544331089899871887643---101-------------------333189999999999
Q gi|254780661|r 144 DGIQWPSRDDGATSFKLQDLALANGIEHVN---AHD-------------------AKADVYATLALVWLI 191 (471)
Q Consensus 144 ~~~~~~~~~~~~~~~kL~~la~~n~i~~~~---aH~-------------------A~~D~~~t~~l~k~i 191 (471)
-.-++|+|+.+|+..--.... .++ .+.||..+..|+.++
T Consensus 289 ---------~~~~sy~L~~va~~~L~~~k~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~D~~L~~~L~~kl 349 (786)
T 3k59_A 289 ---------WNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKNCELVTQIFHKT 349 (786)
T ss_dssp ---------CCCSCCSHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---------2554378899999975788666786775345542461458899999988899999999985