Query gi|254780661|ref|YP_003065074.1| exonuclease I [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 471
No_of_seqs 170 out of 1439
Neff 8.2
Searched_HMMs 23785
Date Tue May 31 19:12:03 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780661.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qxf_A Exodeoxyribonuclease I; 100.0 0 0 760.3 43.8 469 2-470 8-477 (482)
2 2ioc_B Three prime repair exon 100.0 3.6E-32 1.5E-36 224.1 16.0 186 2-199 11-219 (242)
3 1y97_A Three prime repair exon 100.0 1E-29 4.3E-34 208.4 15.4 179 3-193 10-208 (238)
4 2p1j_A POLIII, DNA polymerase 100.0 2.5E-27 1E-31 193.0 17.9 167 4-198 13-179 (186)
5 2is3_A Ribonuclease T; RNAse, 100.0 5.9E-27 2.5E-31 190.6 17.2 174 5-198 19-204 (215)
6 2xri_A ERI1 exoribonuclease 3; 99.9 1.2E-25 5.1E-30 182.2 19.6 173 3-194 31-213 (224)
7 2gui_A DNA polymerase III epsi 99.9 3.8E-25 1.6E-29 179.0 19.0 174 2-198 8-188 (194)
8 2f96_A Ribonuclease T; RNAse, 99.9 3.4E-25 1.4E-29 179.3 16.5 174 6-198 32-216 (224)
9 3cg7_A CRN-4, cell death-relat 99.9 5.9E-24 2.5E-28 171.3 19.5 179 3-194 19-208 (308)
10 1w0h_A 3'-5' exonuclease ERI1; 99.9 6.6E-24 2.8E-28 171.0 18.7 177 1-195 8-196 (204)
11 1zbh_A 3'-5' exonuclease ERI1; 99.9 1.4E-22 5.9E-27 162.5 20.0 171 3-192 78-260 (299)
12 2gbz_A Oligoribonuclease; ORN, 99.9 2.5E-23 1E-27 167.3 15.7 170 2-199 8-185 (194)
13 1zbu_A ERI-1 homolog, 3'-5' ex 99.9 2.1E-22 8.8E-27 161.4 17.2 172 3-193 128-311 (349)
14 1wlj_A Interferon stimulated g 99.9 4E-23 1.7E-27 166.0 10.3 159 2-192 4-166 (189)
15 2igi_A Oligoribonuclease; RNAs 99.9 7.8E-22 3.3E-26 157.7 14.1 166 3-195 5-177 (180)
16 1x9m_A DNA polymerase; DNA plo 98.9 4E-09 1.7E-13 76.0 9.2 151 5-194 1-182 (698)
17 2gv9_A DNA polymerase; polymer 98.8 3.5E-07 1.5E-11 63.5 13.6 171 4-191 321-550 (1193)
18 2d5r_A CCR4-NOT transcription 98.7 1.6E-06 6.6E-11 59.3 15.9 178 3-195 24-235 (252)
19 2p51_A SPCC18.06C protein; DED 98.6 2.8E-06 1.2E-10 57.7 15.6 178 3-195 45-256 (333)
20 1uoc_A POP2; hydrolase, DEDD n 98.5 5.5E-06 2.3E-10 55.8 13.5 189 3-195 38-265 (289)
21 2kfn_A Klenow fragment of DNA 98.5 5E-06 2.1E-10 56.1 12.8 101 3-138 26-126 (605)
22 3iay_A DNA polymerase delta ca 98.3 9.6E-06 4E-10 54.3 11.2 183 4-213 250-496 (919)
23 1qht_A Protein (DNA polymerase 98.2 0.00012 5.2E-09 47.1 14.4 151 4-191 136-326 (775)
24 3k59_A POL II, DNA polymerase 98.0 0.00015 6.1E-09 46.7 12.6 154 4-191 154-349 (786)
25 3nae_A DNA polymerase, GP43; R 97.9 0.00015 6.3E-09 46.6 11.3 146 4-167 109-297 (903)
26 2hhv_A DNA polymerase I; DNA r 97.9 0.00013 5.4E-09 47.0 10.4 135 2-196 16-170 (580)
27 1noy_A Protein (DNA polymerase 97.5 0.0043 1.8E-07 37.2 12.9 101 4-112 107-229 (388)
28 1s5j_A DNA polymerase I; repli 97.4 0.00086 3.6E-08 41.7 8.9 167 4-190 191-388 (847)
29 2a1r_A Poly(A)-specific ribonu 97.3 0.008 3.4E-07 35.5 16.2 73 3-75 22-133 (430)
30 1yt3_A Ribonuclease D, RNAse D 97.2 0.011 4.6E-07 34.6 14.3 133 2-197 21-172 (375)
31 2hbj_A Exosome complex exonucl 96.1 0.062 2.6E-06 29.8 12.1 133 2-197 105-256 (410)
32 3d45_A Poly(A)-specific ribonu 95.7 0.043 1.8E-06 30.8 7.7 96 86-195 272-392 (507)
33 2py5_A DNA polymerase; protein 94.8 0.083 3.5E-06 29.0 6.8 152 1-193 4-182 (575)
34 2e6m_A Werner syndrome ATP-dep 88.8 0.98 4.1E-05 22.1 14.5 88 81-193 87-193 (208)
35 3cym_A Uncharacterized protein 86.6 1.3 5.6E-05 21.2 14.1 132 4-197 39-189 (440)
36 1vk0_A Hypothetical protein; h 79.6 2.5 0.00011 19.4 9.8 91 80-193 98-205 (206)
37 3iyk_A VP5; icosahedral virus; 75.9 3.2 0.00013 18.8 8.4 50 220-270 360-409 (526)
38 3m8r_A DNA polymerase I, therm 24.2 26 0.0011 13.0 8.1 78 94-200 56-136 (540)
39 3g25_A Glycerol kinase; IDP007 23.0 27 0.0011 12.8 3.4 41 1-55 4-44 (501)
No 1
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, product bound structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli K12} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=100.00 E-value=0 Score=760.29 Aligned_cols=469 Identities=52% Similarity=0.955 Sum_probs=452.2
Q ss_pred CCCEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHH
Q ss_conf 88379997527889877260489999998389728040022662178887785789898579988996079997999999
Q gi|254780661|r 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRR 81 (471)
Q Consensus 2 ~~~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~ 81 (471)
..+|||||+||||++|.+|||||+|||++|.+|++++++++++|||+|+++|+|+|+.|||||++++.++|.|++|++++
T Consensus 8 ~~~~v~~D~ETTGl~~~~d~iiq~~ai~~d~~~~~~~~~~~~~~~~~~~~~p~~~a~~v~gi~~~~~~~~~~~~~e~~~~ 87 (482)
T 2qxf_A 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAAR 87 (482)
T ss_dssp CCEEEEEEEEESSSCTTTSCEEEEEEEEECTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHHHH
T ss_pred CCCEEEEEEECCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHCCCCCHHHHHHH
T ss_conf 89789999887897999982289999999899858514567763479999988789688494999997399999999999
Q ss_pred HHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 99995117965999505578999999999850785321325688710015888865556532100244444544331089
Q gi|254780661|r 82 IHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161 (471)
Q Consensus 82 i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~ 161 (471)
|+++|+.|++++|||||++||++|+|+.||||+++||.++++++|.++|++.++++++.++|+.++||.+.+|+++|||+
T Consensus 88 i~~~~~~~~~~~vg~N~~~FD~~~l~~~~~r~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~ 167 (482)
T 2qxf_A 88 IHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLE 167 (482)
T ss_dssp HHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCHH
T ss_pred HHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
T ss_conf 99998448976999676334799999998874478501220268750256888888864044221243234686646699
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEE
Q ss_conf 89987188764310133318999999999986422689999962388989974200157607997010104778750688
Q gi|254780661|r 162 DLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 (471)
Q Consensus 162 ~la~~n~i~~~~aH~A~~D~~~t~~l~k~i~~~~p~~~~~~l~~~~K~~v~~~l~~~~~~~~~~v~~~~~~~~~~~~~v~ 241 (471)
.+|++||+.+++||||++||.||++|+++|+.++|.+|++++.+++|+.|.+++..+++.+++++++.++.+.++.++++
T Consensus 168 ~l~~~~~i~~~~aHdA~~D~~~t~~l~~~l~~~~p~~~~~~l~~~~K~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~ 247 (482)
T 2qxf_A 168 HLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 247 (482)
T ss_dssp HHHHHTTCCCC---CTTHHHHHHHHHHHHHHHHSHHHHHHHHHTTSHHHHHHTCCTTTTCCEEEECGGGCGGGTTEEEEE
T ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEC
T ss_conf 99998199877886635517999999999987471678788871578889998601113420566101155667402312
Q ss_pred EEECCCCCCCEEEEEECCCCCCHHCCCCHHHHHHHHHCCHHHHHCCCCCCEEEEECCCCCEECCHHHCCHHHHHHCCCCH
Q ss_conf 63028887744787103568720007998899987406514420247743057653678754375570313455403588
Q gi|254780661|r 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDH 321 (471)
Q Consensus 242 ~~~~~p~~~n~~i~fDL~~Dp~~~l~l~~~el~~~l~~~~~~~~~~~~~~lr~ik~Nk~Pil~~~~~~~~~~~~~~~i~~ 321 (471)
+++.||.|.|+.+||||++||+++++++.+++++.++++........+.++|++++|++|++++.+++.......++++.
T Consensus 248 ~~~~~p~~~n~~i~fDL~~Dp~~~l~L~~~el~~~l~~~~~~~~~~~~~~ir~i~~Nk~pil~~~~~~~~~~~~~~~~~~ 327 (482)
T 2qxf_A 248 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDADRLGINR 327 (482)
T ss_dssp EEEECSSCTTEEEEEETTSCCHHHHHCC-------------------CCCEEEEETTSCCEEEEGGGSCHHHHHHHTCCH
T ss_pred CCCCCCCCCCEEEECCCCCCHHHHHCCCHHHHHHHHHHCCCCHHHCCCCCEEEEECCCCCCCCCHHHCCCCCHHHHHHHH
T ss_conf 46467777660463200039597744899999999850232112135664267402568755645551600076654039
Q ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHCCC-CCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 9999989997618546888874430133-443332045410246897662216889759988986212048983799999
Q gi|254780661|r 322 KRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF 400 (471)
Q Consensus 322 ~~l~~r~~~l~~n~~~~~~~~~~~~~~~-~~~~~~~E~~IY~gF~s~~Dk~~~~~fh~a~~~~k~~i~~~f~D~Rl~~l~ 400 (471)
+.+.+|++.+++|+++.+++..+..... .+++.++|++||+||+++.|+.+|++||.++|+++++++.+|+|+|+++|+
T Consensus 328 ~~l~~r~~~i~~n~~~~~~i~~~~~~~~~~~~~~~~e~~iy~gF~s~~Dk~l~~~fh~a~~~ek~~~~~~f~D~Rl~~l~ 407 (482)
T 2qxf_A 328 QHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLL 407 (482)
T ss_dssp HHHHHHHHHHHHCTTHHHHC-------------CCGGGCGGGCCCCHHHHHHHHHHHHSCTTTSTTCCCCCCSTHHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHH
T ss_conf 99999999998696889988999875234665411466675057987899999999847999999888358776899999
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9996311810089999999999999750678889999999999965149988999999999999975278
Q gi|254780661|r 401 FRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470 (471)
Q Consensus 401 ~R~i~~n~P~~Ls~~~~~~~~~~i~~rl~~~~i~~~~~ei~~l~~~~~~d~~~~~iL~~l~~yl~~l~~~ 470 (471)
+|++|||+|+.||++++++|+++|++||+++|++++++++++++.+...+++++.||++|++|+++|+-.
T Consensus 408 ~r~i~rn~p~~L~~ee~~~~~~~i~~rl~~~t~~~~~~ei~~l~~~~~~~~~k~~iL~~l~~y~~~l~e~ 477 (482)
T 2qxf_A 408 FNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYADEIVEH 477 (482)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHCHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999874821199999999999999985678599999999999976308999999999999999999876
No 2
>2ioc_B Three prime repair exonuclease 1; proline helix, nucleotide complex, DNAQ family, hydrolase; HET: D5M; 2.10A {Mus musculus} SCOP: c.55.3.5 PDB: 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=100.00 E-value=3.6e-32 Score=224.13 Aligned_cols=186 Identities=17% Similarity=0.193 Sum_probs=143.7
Q ss_pred CCCEEEEECCCCCCCCCCCEEEEEEEEEECCCC------------------EECCEEEEEEECCCCCCCCCHHHHHHHCC
Q ss_conf 883799975278898772604899999983897------------------28040022662178887785789898579
Q gi|254780661|r 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQW------------------EKIESTEVFFCKPADDYLPDPEAVFITGI 63 (471)
Q Consensus 2 ~~~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~------------------~~~~~~~~~~~~~~~~~~p~p~a~~v~gi 63 (471)
|++|||||+||||+++..++|||+|+|.+|.+. .++++++. .+ +|+..++|+|..||||
T Consensus 11 ~~t~v~~D~ETTGl~~~~~~Iieia~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-lv--~P~~~I~~~a~~ihGI 87 (242)
T 2ioc_B 11 MQTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSL-CI--APGKACSPGASEITGL 87 (242)
T ss_dssp CSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSSCEEEEE-EC--CCSSCCCHHHHHHHCC
T ss_pred CCEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH-EE--CCCCCCCHHHHHHCCC
T ss_conf 88599999888996999987689999998767534652221111135665411012330-12--8899799889986299
Q ss_pred CHHHHHHCCCCH--HHHHHHHHHHHHCC--CCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 988996079997--99999999995117--96599950557899999999985078532132568871001588886555
Q gi|254780661|r 64 TPQKALRDGVVE--AEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139 (471)
Q Consensus 64 t~~~~~~~~~~~--~e~~~~i~~~~~~~--~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~ 139 (471)
|++++.+++.+. ..+.+.+..++... +.++||||+.+||..||++.++|++++.. .++...+|++.+++...
T Consensus 88 t~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~lVahN~~~FD~~~L~~~~~r~~~~~~----~~~~~~iDtl~~~~~~~ 163 (242)
T 2ioc_B 88 SKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSP----LDGTFCVDSIAALKALE 163 (242)
T ss_dssp CHHHHHHTTCCCSCHHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCT----TTTCEEEEHHHHHHHHH
T ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCC----CCCCEEEEHHHHHHHHH
T ss_conf 99999720155056899998999997416885599835478899999999998599888----77886877899999970
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHH-HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 653210024444454433108989987-188764310133318999999999986422689
Q gi|254780661|r 140 AFSPDGIQWPSRDDGATSFKLQDLALA-NGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199 (471)
Q Consensus 140 ~~~p~~~~~~~~~~~~~~~kL~~la~~-n~i~~~~aH~A~~D~~~t~~l~k~i~~~~p~~~ 199 (471)
...+ +....+.+++||+.+++. +|++.++||+|++||.+|++|++.+.++...+.
T Consensus 164 ~~~~-----~~~~~~~~~~~L~~l~~~~~g~~~~~aH~Al~Da~~t~~l~~~~~~~~~~~~ 219 (242)
T 2ioc_B 164 QASS-----PSGNGSRKSYSLGSIYTRLYWQAPTDSHTAEGDVLTLLSICQWKPQALLQWV 219 (242)
T ss_dssp HTC------------CCCCCHHHHHHHHHSSCCSSTTSHHHHHHHHHHHHTSSHHHHHHHH
T ss_pred HCCC-----CCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3242-----2246776685689999997499998783889999999999999999999988
No 3
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=99.97 E-value=1e-29 Score=208.38 Aligned_cols=179 Identities=19% Similarity=0.163 Sum_probs=138.5
Q ss_pred CCEEEEECCCCCCCCCCCEEEEEEEEEECCCC---------------EECCEEEEEEECCCCCCCCCHHHHHHHCCCHHH
Q ss_conf 83799975278898772604899999983897---------------280400226621788877857898985799889
Q gi|254780661|r 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQW---------------EKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 (471)
Q Consensus 3 ~~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~---------------~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~ 67 (471)
++|||+|+||||+++..++|||+|+|.+|.+. .++++++. +++| ...++|++..+||||+++
T Consensus 10 ~~~vvlD~ETTGl~~~~~~Iiei~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~v~P--~~~i~~~~~~i~git~~~ 86 (238)
T 1y97_A 10 ETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTL-CMCP--ERPFTAKASEITGLSSEG 86 (238)
T ss_dssp SEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEE-ECCC--SSCCCHHHHHHHCCCHHH
T ss_pred CEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEECCEEE-EECC--CCCCCHHHHHHCCCCHHH
T ss_conf 9799999881898999986699999999899522231000024566621021357-8888--998998899860899999
Q ss_pred HHHCCCC-HHHHHH-HHHHHHHC--CCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9607999-799999-99999511--7965999505578999999999850785321325688710015888865556532
Q gi|254780661|r 68 ALRDGVV-EAEFSR-RIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSP 143 (471)
Q Consensus 68 ~~~~~~~-~~e~~~-~i~~~~~~--~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p 143 (471)
+.+++.+ ..+.+. .+..++.. .+.++||||+.+||..||++.|.|+++.+. .++..+|++.+++......+
T Consensus 87 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~hn~~~FD~~~L~~~~~r~~~~~~-----~~~~~iDtl~~~~~l~~~~~ 161 (238)
T 1y97_A 87 LARCRKAGFDGAVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLP-----RDTVCLDTLPALRGLDRAHS 161 (238)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCC-----TTCEEEEHHHHHHHHHHHC-
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCC-----CCCEEEEHHHHHHHHHHCCC
T ss_conf 9853153058999999999887416882699965187789999999998089888-----89878778999999735075
Q ss_pred HHCCCCCCCCCCCCCCHHHHHHH-HCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 10024444454433108989987-188764310133318999999999986
Q gi|254780661|r 144 DGIQWPSRDDGATSFKLQDLALA-NGIEHVNAHDAKADVYATLALVWLIRE 193 (471)
Q Consensus 144 ~~~~~~~~~~~~~~~kL~~la~~-n~i~~~~aH~A~~D~~~t~~l~k~i~~ 193 (471)
. .....+.+++||+.|++. +|+..++||+|++||.+|++|++.+..
T Consensus 162 ~----~~~~~~~~~~~L~~l~~~~~~~~~~~aH~Al~Da~~t~~i~~~l~~ 208 (238)
T 1y97_A 162 H----GTRARGRQGYSLGSLFHRYFRAEPSAAHSAEGDVHTLLLIFLHRAA 208 (238)
T ss_dssp -------------CCSHHHHHHHHHSSCCC---CHHHHHHHHHHHHHHTHH
T ss_pred C----CCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 4----4456666885899999996499989788989999999999999999
No 4
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=99.96 E-value=2.5e-27 Score=193.04 Aligned_cols=167 Identities=20% Similarity=0.247 Sum_probs=137.6
Q ss_pred CEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHHH
Q ss_conf 37999752788987726048999999838972804002266217888778578989857998899607999799999999
Q gi|254780661|r 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIH 83 (471)
Q Consensus 4 ~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~i~ 83 (471)
.||++|+||||++|..++|||+|+|.++ +++++++++. +|+| +..+++++..+|||+++++.+ +.+..+++.++.
T Consensus 13 ~yvviD~ETTGl~~~~~~Iieig~v~~~-~~~i~~~~~~-~v~p--~~~~~~~~~~i~gi~~~~~~~-~~~~~~~~~~~~ 87 (186)
T 2p1j_A 13 TFVVLDFETTGLDPQVDEIIEIGAVKIQ-GGQIVDEYHT-LIKP--SREISRKSSEITGITQEMLEN-KRSIEEVLPEFL 87 (186)
T ss_dssp CEEEEEEEESCSCTTTCCEEEEEEEEEE-TTEEEEEEEE-ECBC--SSCCCHHHHHHHCCCHHHHTT-CCBHHHHHHHHH
T ss_pred CEEEEEEECCCCCCCCCEEEEEEEEEEE-CCEEEEEEEE-EECC--CCCCCHHHHHHCCCCHHHCCC-CCHHHHHHHHHH
T ss_conf 4999998728999999868999999998-9968778899-8668--876898999870987565002-121999999999
Q ss_pred HHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 99511796599950557899999999985078532132568871001588886555653210024444454433108989
Q gi|254780661|r 84 QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163 (471)
Q Consensus 84 ~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~~l 163 (471)
+++. +.++|||| ++||..||+..+.+.+.+++. +..+|++.+.+... +.++++|+.+
T Consensus 88 ~~~~--~~~~v~hn-~~fD~~~L~~~~~~~~~~~~~------~~~id~~~~~~~~~--------------~~~~~~L~~l 144 (186)
T 2p1j_A 88 GFLE--DSIIVAHN-ANFDYRFLRLWIKKVMGLDWE------RPYIDTLALAKSLL--------------KLRSYSLDSV 144 (186)
T ss_dssp HHSS--SCEEEETT-HHHHHHHHHHHHHHHHCCCCC------CCEEEHHHHHHHHT--------------CCSCCSHHHH
T ss_pred HHCC--CCEEEEEC-HHHHHHHHHHHHHHHCCCCCC------CCCCCHHHHHHHHC--------------CCCCCCHHHH
T ss_conf 7469--99899977-898799999999984498766------76202099999865--------------6789889999
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98718876431013331899999999998642268
Q gi|254780661|r 164 ALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198 (471)
Q Consensus 164 a~~n~i~~~~aH~A~~D~~~t~~l~k~i~~~~p~~ 198 (471)
|+.+|++.+++|+|++||.+|++|+..+.++..+-
T Consensus 145 ~~~~gi~~~~~H~Al~Da~~t~~l~~~l~~~~k~~ 179 (186)
T 2p1j_A 145 VEKLGLGPFRHHRALDDARVTAQVFLRFVEMMKKE 179 (186)
T ss_dssp HHHTTCCSTTCCHHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99869998989788999999999999999999824
No 5
>2is3_A Ribonuclease T; RNAse, exoribonuclease, exonuclease, hydrolase, stable RNA maturation, tRNA END-turnover; 3.10A {Escherichia coli K12}
Probab=99.95 E-value=5.9e-27 Score=190.63 Aligned_cols=174 Identities=22% Similarity=0.194 Sum_probs=134.1
Q ss_pred EEEEECCCCCCCCCCCEEEEEEEEEEC--CCCE-ECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHH
Q ss_conf 799975278898772604899999983--8972-8040022662178887785789898579988996079997999999
Q gi|254780661|r 5 FVIYDYETFGRDVALDRPAQFAGVRVD--RQWE-KIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRR 81 (471)
Q Consensus 5 ~v~~D~ETtG~~~~~~~iiq~~~i~~d--~~~~-~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~ 81 (471)
+|++|+||||++|..|+|||+|||+++ .++. ++++.....++|.++...+|+++.+|||+++.+...+.+..+.+.+
T Consensus 19 ~Vv~D~ETTGl~p~~d~IIeIgav~i~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~i~gi~~~~~~~~~~~~~~~~~~ 98 (215)
T 2is3_A 19 PVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSEYEALHE 98 (215)
T ss_dssp EEEEEEEESSSCTTTSCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCCCCHHHHHHHCCCTTCSTTCCBCHHHHHHH
T ss_pred EEEEEEECCCCCCCCCCCEEEEEEEEEECCCCCEECCCEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHH
T ss_conf 59998379999999983289999998956888683353599985268899988568760252138787079861253599
Q ss_pred HHHHHHC------CCC-EEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9999511------796-599950557899999999985078532132568871001588886555653210024444454
Q gi|254780661|r 82 IHQFFSV------PNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG 154 (471)
Q Consensus 82 i~~~~~~------~~~-~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~ 154 (471)
+.+++.. .+. ++|||| ++||..||++.+.|++++... ...+..+|++.+.+.. .
T Consensus 99 ~~~~i~~~~~~~~~~~~~lVaHN-a~FD~~fL~~~~~r~~l~~~~---~~~~~~iDt~~~~~~~---~------------ 159 (215)
T 2is3_A 99 IFKVVRKGIKASGCNRAIMVAHN-ANFDHSFMMAAAERASLKRNP---FHPFATFDTAALAGLA---L------------ 159 (215)
T ss_dssp HHHHHHHHHHHHTCSEEEEEETT-HHHHHHHHHHHHHHHTCTTCC---EEEEEEEEHHHHHHHH---H------------
T ss_pred HHHHHHHHHHHHCCCCCCCCCCC-CHHHHHHHHHHHHHCCCCCCC---CCCHHHHHHHHHHHHH---H------------
T ss_conf 99999999876314655010037-687699999999983999886---5330167799999887---3------------
Q ss_pred CCCCCHHHHHHHHCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43310898998718876--431013331899999999998642268
Q gi|254780661|r 155 ATSFKLQDLALANGIEH--VNAHDAKADVYATLALVWLIREKKPKL 198 (471)
Q Consensus 155 ~~~~kL~~la~~n~i~~--~~aH~A~~D~~~t~~l~k~i~~~~p~~ 198 (471)
++++|+.+|.+.|++. .+||+|++||.+|++|+..+.++.++.
T Consensus 160 -~~~~L~~l~~~~~i~~~~~~~H~Al~Da~~ta~lf~~l~~~~~~~ 204 (215)
T 2is3_A 160 -GQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWKRL 204 (215)
T ss_dssp -SCCSHHHHHHHTTCCCCTTTTTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -CCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf -632499999985999999976786999999999999999999975
No 6
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=99.95 E-value=1.2e-25 Score=182.16 Aligned_cols=173 Identities=12% Similarity=0.083 Sum_probs=136.2
Q ss_pred CCEEEEECCCCCCCCCCC--EEEEEEEEEEC-CCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHH
Q ss_conf 837999752788987726--04899999983-897280400226621788877857898985799889960799979999
Q gi|254780661|r 3 NHFVIYDYETFGRDVALD--RPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79 (471)
Q Consensus 3 ~~~v~~D~ETtG~~~~~~--~iiq~~~i~~d-~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~ 79 (471)
..||++|+||||.++..+ +|||+|||++| .+++++++|+. +|+|.....++|++..+||||++++.+++ +..+++
T Consensus 31 ~~~vv~D~EtTg~~~~~~~~eIIEiGaV~~d~~~~~i~~~f~~-~vkP~~~~~i~~~~~~itgIt~e~l~~a~-~~~ev~ 108 (224)
T 2xri_A 31 HYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHM-YVQPVVHPQLTPFCTELTGIIQAMVDGQP-SLQQVL 108 (224)
T ss_dssp SEEEEECCEECCCC-CCSSCCEEEEEEEEEETTTCCEEEEEEE-ECCCSSSCSCCHHHHHHHCCCHHHHTTCC-CHHHHH
T ss_pred CEEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEE-EECCCCCCCCCHHHHEECCCCHHHCCCCC-CHHHHH
T ss_conf 9899999836899998897818999999998999869889999-99979888789678153011356511346-377789
Q ss_pred HHHHHHHHCC-----CCEEEEEECHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9999995117-----965999505578999-9999998507853213256887100158888655565321002444445
Q gi|254780661|r 80 RRIHQFFSVP-----NTCIIGYNNIRFDDY-YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDD 153 (471)
Q Consensus 80 ~~i~~~~~~~-----~~~~ig~N~~~FD~~-~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~ 153 (471)
+++.+++... +..++.+++.+||.. +++..+.+.+++.... .+...|+..+.+.. +|
T Consensus 109 ~~f~~~l~~~~lv~~~~~~~~~~~~~fD~~~~l~~~~~~~~~~~p~~----~~~~iD~~~~~~~~---~~---------- 171 (224)
T 2xri_A 109 ERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADY----FKQWINLKKAYSFA---MG---------- 171 (224)
T ss_dssp HHHHHHHHHTTTTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGG----GSCEEEHHHHHHHH---HT----------
T ss_pred HHHHHHHCCCEEEEECCEEEEEECCHHHHHHHHHHHHHHCCCCCCCC----CCEEEHHHHHHHHH---HC----------
T ss_conf 99999965885994055279996516665789999999749998743----43123499999997---18----------
Q ss_pred CCCCCCHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 4433108989987188764-3101333189999999999864
Q gi|254780661|r 154 GATSFKLQDLALANGIEHV-NAHDAKADVYATLALVWLIREK 194 (471)
Q Consensus 154 ~~~~~kL~~la~~n~i~~~-~aH~A~~D~~~t~~l~k~i~~~ 194 (471)
..++++|+.+++++||+.. ++|+|+.||.+|++|++.+.++
T Consensus 172 ~~~~~~L~~l~~~~gi~~~~~~H~Al~DA~~ta~l~~~Ll~~ 213 (224)
T 2xri_A 172 CWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYR 213 (224)
T ss_dssp SCCTTTHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 777876999999869999998738599999999999999977
No 7
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A*
Probab=99.94 E-value=3.8e-25 Score=178.97 Aligned_cols=174 Identities=20% Similarity=0.173 Sum_probs=138.4
Q ss_pred CCCEEEEECCCCCCCCC-----CCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHH
Q ss_conf 88379997527889877-----2604899999983897280400226621788877857898985799889960799979
Q gi|254780661|r 2 TNHFVIYDYETFGRDVA-----LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEA 76 (471)
Q Consensus 2 ~~~~v~~D~ETtG~~~~-----~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~ 76 (471)
|..|||||+||||+++. .|+|||+|+|+++.+..+.++++. +|+|. ..+.+.+..+|||+++++..++ +..
T Consensus 8 ~~r~vv~D~ETTGl~~~~~~~~~drIieigav~~~~~~~~~~~~~~-~v~P~--~~~~~~~~~i~gi~~e~~~~~~-~~~ 83 (194)
T 2gui_A 8 ITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHV-YLKPD--RLVDPEAFGVHGIADEFLLDKP-TFA 83 (194)
T ss_dssp CCEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEETTEECSCCEEE-ECCCS--SCCCHHHHHHHCCCHHHHTTSC-CHH
T ss_pred CCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEECCEEECEEEEE-EECCC--CCCCHHHHHHHCCCHHHHHHHH-HHH
T ss_conf 8837999973799987645678954999999999999997407899-98999--8655778987075576643345-589
Q ss_pred HHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99999999951179659995055789999999998507853213256887100158888655565321002444445443
Q gi|254780661|r 77 EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT 156 (471)
Q Consensus 77 e~~~~i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~ 156 (471)
+++.++.+++. +..+|||| ..||..+++..+.+.+++..... ..+...|.+.+.+.. +|+ +
T Consensus 84 ~v~~~~~~~l~--~~~~v~~~-~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~---~p~-----------~ 144 (194)
T 2gui_A 84 EVADEFMDYIR--GAELVIHN-AAFDIGFMDYEFSLLKRDIPKTN--TFCKVTDSLAVARKM---FPG-----------K 144 (194)
T ss_dssp HHHHHHHHHHT--TSEEEETT-HHHHHHHHHHHHHHTCSCCCCGG--GTSEEEEHHHHHHHH---STT-----------S
T ss_pred HHHHHHHHHHC--CCEEEEEC-CCCCHHHHHHHHHHHCCCCCCCC--CCCCCEEHHHHHHHH---CCC-----------C
T ss_conf 98899998708--97389978-51319999999998099976555--442000199999997---489-----------8
Q ss_pred CCCHHHHHHHHCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3108989987188764--31013331899999999998642268
Q gi|254780661|r 157 SFKLQDLALANGIEHV--NAHDAKADVYATLALVWLIREKKPKL 198 (471)
Q Consensus 157 ~~kL~~la~~n~i~~~--~aH~A~~D~~~t~~l~k~i~~~~p~~ 198 (471)
+++|+.+|..+|+... ++|+|++||.+|++|+..+..+...+
T Consensus 145 ~~~L~~l~~~~~i~~~~~~~H~Al~Da~~t~~l~~~m~~~~~~~ 188 (194)
T 2gui_A 145 RNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSM 188 (194)
T ss_dssp CCSHHHHHHHTTCCCTTCSSCCHHHHHHHHHHHHHHHTC-----
T ss_pred CCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 78899999985999899987488999999999999997785533
No 8
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PSI, MCSG, protein structure initiative; 2.09A {Pseudomonas aeruginosa PAO1} SCOP: c.55.3.5
Probab=99.94 E-value=3.4e-25 Score=179.33 Aligned_cols=174 Identities=22% Similarity=0.172 Sum_probs=131.9
Q ss_pred EEEECCCCCCCCCCCEEEEEEEEEE--CCCCEECCEEE-EEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHH
Q ss_conf 9997527889877260489999998--38972804002-26621788877857898985799889960799979999999
Q gi|254780661|r 6 VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTE-VFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRI 82 (471)
Q Consensus 6 v~~D~ETtG~~~~~~~iiq~~~i~~--d~~~~~~~~~~-~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~i 82 (471)
|++|+||||++|..|+|||||||++ |.++++++... ...++|.+...++++++.+|||+++++...+....+.+.+.
T Consensus 32 Vv~D~ETTGl~~~~d~IIeIgAV~v~~d~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 111 (224)
T 2f96_A 32 VVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQEEAALTEI 111 (224)
T ss_dssp EEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCBCHHHHHHHH
T ss_pred EEEEEECCCCCCCCCCEEEEEEEEEEECCCCCEECCEEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHCCCHHHHHHHH
T ss_conf 79998689989878846899999998524782610124668736866778985036512101256554032103779999
Q ss_pred H----HHHHCC--CCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 9----995117--9659995055789999999998507853213256887100158888655565321002444445443
Q gi|254780661|r 83 H----QFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT 156 (471)
Q Consensus 83 ~----~~~~~~--~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~ 156 (471)
. +++..+ +..++++|+..||..++++.+.+++++... ...+|.+...+..+.. .+
T Consensus 112 ~~~~~~~~~~~~~~~~~~v~~n~~fd~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-------------~~ 172 (224)
T 2f96_A 112 FRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNP------FHPFSSFDTATLAGLA-------------YG 172 (224)
T ss_dssp HHHHHHHHHHTTCSEEEEEETTHHHHHHHHHHHHHHHTCCCCC------EEEEEEEEHHHHHHHH-------------HS
T ss_pred HHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCC------CCHHHHHHHHHHHHHH-------------CC
T ss_conf 9999988764045543221534788999999999981999886------4113589999998754-------------79
Q ss_pred CCCHHHHHHHHCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 310898998718876--431013331899999999998642268
Q gi|254780661|r 157 SFKLQDLALANGIEH--VNAHDAKADVYATLALVWLIREKKPKL 198 (471)
Q Consensus 157 ~~kL~~la~~n~i~~--~~aH~A~~D~~~t~~l~k~i~~~~p~~ 198 (471)
.++|+.+|.++||+. .+||+|++||.+|++|+.+|.++.+.+
T Consensus 173 ~~~L~~l~~~~gi~~~~~~aH~Al~Da~~ta~l~~kl~~~~~~~ 216 (224)
T 2f96_A 173 QTVLAKACQAAGMEFDNREAHSARYDTEKTAELFCGIVNRWKEM 216 (224)
T ss_dssp CCSHHHHHHHTTCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 64399999982999998976788999999999999999999981
No 9
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=99.93 E-value=5.9e-24 Score=171.34 Aligned_cols=179 Identities=13% Similarity=0.059 Sum_probs=134.2
Q ss_pred CCEEEEECCCCCCCCCCC---EEEEEEEEEECC-CCEEC--CEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHH
Q ss_conf 837999752788987726---048999999838-97280--400226621788877857898985799889960799979
Q gi|254780661|r 3 NHFVIYDYETFGRDVALD---RPAQFAGVRVDR-QWEKI--ESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEA 76 (471)
Q Consensus 3 ~~~v~~D~ETtG~~~~~~---~iiq~~~i~~d~-~~~~~--~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~ 76 (471)
++||++|+||||+++..+ +|||||||++|. ++++. ++|+. +|+|......++.+..+||||++++.++ .++.
T Consensus 19 d~~vViD~ETTg~~~~~d~~~EIIEIgaV~vd~~~~~i~~~~~F~~-~VkP~~~~~ls~~~~~ltGIt~e~v~~a-p~f~ 96 (308)
T 3cg7_A 19 DTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNK-YVKPVLNRTLTKNCVDFTGIPQRSIDTA-DTFD 96 (308)
T ss_dssp SEEEEEEEEECCBTTBCSCCCCEEEEEEEEEETTTTEEEEEEEEEE-ECBCSSBCSCCHHHHHHHCCCHHHHHTS-CBHH
T ss_pred CEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCEEEECCEEEE-EECCCCCCCCCHHHHHHCCCCHHHHHCC-CHHH
T ss_conf 7189999760899878899960799999999805998978418887-7898888867988998719798994311-0045
Q ss_pred HHHHHHHHHHHCC----CCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999995117----965999505578999999999850785321325688710015888865556532100244444
Q gi|254780661|r 77 EFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRD 152 (471)
Q Consensus 77 e~~~~i~~~~~~~----~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~ 152 (471)
|+++++.+++... ..+.+++|+..++..|+++.+.+++++.... .+...|+..+.+..... ....
T Consensus 97 evl~~f~~~l~~~~l~~~~~~f~~~~~~D~~~~L~~~~~~~~i~~P~~----~~~~iDl~~~~~~~~~~-------~~~~ 165 (308)
T 3cg7_A 97 VVYEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAF----FRQYINLYKIFTNEMDR-------MGPK 165 (308)
T ss_dssp HHHHHHHHHHHHHCCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGG----GSEEEEHHHHHHHHHHH-------HCCC
T ss_pred HHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCC----CCCEEEHHHHHHHHHHH-------HHHC
T ss_conf 668899999736773232899931545669999999999809998720----13244599999999997-------4322
Q ss_pred CCCCCCCHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 54433108989987188764-3101333189999999999864
Q gi|254780661|r 153 DGATSFKLQDLALANGIEHV-NAHDAKADVYATLALVWLIREK 194 (471)
Q Consensus 153 ~~~~~~kL~~la~~n~i~~~-~aH~A~~D~~~t~~l~k~i~~~ 194 (471)
.+..+++|+.++..+||+.+ +||+|+.||.+|++|++.|.++
T Consensus 166 ~~~~~~~L~~l~~~~gI~~~g~aH~ALdDA~~tA~Il~kLl~~ 208 (308)
T 3cg7_A 166 ELSATTNIGKMNEYYDLPTIGRAHDAMDDCLNIATILQRMINM 208 (308)
T ss_dssp CCCCCSHHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 7777778999999769999998968099999999999999977
No 10
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=99.93 E-value=6.6e-24 Score=171.01 Aligned_cols=177 Identities=10% Similarity=0.069 Sum_probs=135.7
Q ss_pred CCCCEEEEECCCC----CCCCCCCEEEEEEEEEECC-CCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCH
Q ss_conf 9883799975278----8987726048999999838-9728040022662178887785789898579988996079997
Q gi|254780661|r 1 MTNHFVIYDYETF----GRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVE 75 (471)
Q Consensus 1 m~~~~v~~D~ETt----G~~~~~~~iiq~~~i~~d~-~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~ 75 (471)
|...||++|+||| |.++..++|||+|||++|. ++.+.++|+. +|+|..+..++|.+..+|||+++++.+++ +.
T Consensus 8 ~~~~~vviD~ETT~~~~~~~~~~~~Iieigav~~d~~~~~~~~~f~~-~i~p~~~~~i~~~~~~i~git~e~~~~~~-~~ 85 (204)
T 1w0h_A 8 YYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQ-YVRPEINTQLSDFCISLTGITQDQVDRAD-TF 85 (204)
T ss_dssp SSSEEEECCCEECCCTTCCTTSCCCEEEEEEEEEETTTCSEEEEEEE-EBCCSSSCSCCHHHHHHHCCCHHHHHTSB-CH
T ss_pred CCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEE-EECCCCCCCCCHHHHHHCCCCHHHHHCCC-CH
T ss_conf 48828999960788889999999808999999998899779899999-97067798689899987299878985088-58
Q ss_pred HHHHHHHHHHHHCC-----CCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999995117-----9659995055789999999998507853213256887100158888655565321002444
Q gi|254780661|r 76 AEFSRRIHQFFSVP-----NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPS 150 (471)
Q Consensus 76 ~e~~~~i~~~~~~~-----~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~ 150 (471)
.++++.+.+++... +.++++.|+..+|..|++..+.+..++... .....+|+....+...
T Consensus 86 ~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~----~~~~~~d~~~~~~~~~----------- 150 (204)
T 1w0h_A 86 PQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPP----FAKKWINIRKSYGNFY----------- 150 (204)
T ss_dssp HHHHHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCG----GGSEEEEHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHCCCEEECCHHHHHCCHHHHHHHHHHHHHHHCCCCCCC----CCCCEEEHHHHHHHHH-----------
T ss_conf 9999999987522412223223221103564899999999981899864----2451676888888875-----------
Q ss_pred CCCCCCCCCHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHH-HHHHHH
Q ss_conf 4454433108989987188764-31013331899999999-998642
Q gi|254780661|r 151 RDDGATSFKLQDLALANGIEHV-NAHDAKADVYATLALVW-LIREKK 195 (471)
Q Consensus 151 ~~~~~~~~kL~~la~~n~i~~~-~aH~A~~D~~~t~~l~k-~i~~~~ 195 (471)
..+..++||+.+++.+|++.. .||+|++||.+|++|++ +++.+.
T Consensus 151 -~~~~~~~kL~~l~~~~gi~~~~~aH~Al~Da~~ta~i~~~ll~~~~ 196 (204)
T 1w0h_A 151 -KVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQDGC 196 (204)
T ss_dssp -TCCGGGCSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred -CCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf -0345788999999986999999884879999999999999998789
No 11
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=99.91 E-value=1.4e-22 Score=162.49 Aligned_cols=171 Identities=11% Similarity=0.108 Sum_probs=128.2
Q ss_pred CCEEEEECCCC---CCCCC-CCEEEEEEEEEEC-CCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHH
Q ss_conf 83799975278---89877-2604899999983-8972804002266217888778578989857998899607999799
Q gi|254780661|r 3 NHFVIYDYETF---GRDVA-LDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAE 77 (471)
Q Consensus 3 ~~~v~~D~ETt---G~~~~-~~~iiq~~~i~~d-~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e 77 (471)
+.||++|+||| |..+. .++|||||||++| .+++++++|+. +|+|......++++..+||||++++.+++ ++.+
T Consensus 78 ~~~vv~D~EtTc~~~~~~~~~~EIIEIgaV~vd~~~~~i~d~F~~-~VkP~~~~~ls~~~~~lTGIT~e~V~~Ap-~f~e 155 (299)
T 1zbh_A 78 DYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQ-YVRPEINTQLSDFCISLTGITQDQVDRAD-TFPQ 155 (299)
T ss_dssp SEEEEECCEECCCTTCCTTCCCCEEEEEEEEEETTTCCEEEEEEE-EBCCSSSCSCCHHHHHHHCCCHHHHHTSB-CHHH
T ss_pred CEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEE-EECCCCCCCCCHHHHHHCCCCHHHHHCCC-CHHH
T ss_conf 989999985368899988899748999889998568759658999-99989898679889885194899974678-7999
Q ss_pred HHHHHHHHHHCCC-----CEEEEEECHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999951179-----65999505578999-99999985078532132568871001588886555653210024444
Q gi|254780661|r 78 FSRRIHQFFSVPN-----TCIIGYNNIRFDDY-YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSR 151 (471)
Q Consensus 78 ~~~~i~~~~~~~~-----~~~ig~N~~~FD~~-~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~ 151 (471)
+++++.+++.... .+.+..+ ..||.. ||+..+.+..++...+ .+..+|+..+.+..+ .
T Consensus 156 vl~~f~~~l~~~~~~~~~~~~~~~~-g~~D~~~fL~~~~~~~~i~~p~~----~~~~iDl~~~~~~~~-------~---- 219 (299)
T 1zbh_A 156 VLKKVIDLMKLKELGTKYKYSLLTD-GSWDMSKFLNIQCQLSRLKYPPF----AKKWINIRKSYGNFY-------K---- 219 (299)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEES-SSHHHHTHHHHHHHHTTBCCCGG----GSEEEEHHHHHHHHH-------T----
T ss_pred HHHHHHHHHCCCCCCCCCCEEEECC-CHHHHHHHHHHHHHHHCCCCCCC----CCCEEEHHHHHHHHH-------C----
T ss_conf 9999999970584024662577505-07669999999999708998743----574776999999984-------6----
Q ss_pred CCCCCCCCHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHH
Q ss_conf 454433108989987188764-31013331899999999998
Q gi|254780661|r 152 DDGATSFKLQDLALANGIEHV-NAHDAKADVYATLALVWLIR 192 (471)
Q Consensus 152 ~~~~~~~kL~~la~~n~i~~~-~aH~A~~D~~~t~~l~k~i~ 192 (471)
.+..+++|+.+++..||+.. .+|+|+.||.+|+.|+..+.
T Consensus 220 -~~~~~~~L~~l~~~~gi~~~G~~H~AldDA~~tA~Il~klL 260 (299)
T 1zbh_A 220 -VPRSQTKLTIMLEKLGMDYDGRPNCGLDDSKNIARIAVRML 260 (299)
T ss_dssp -CCGGGCSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHH
T ss_pred -CCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf -87568799999998699989987283999999999999999
No 12
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, X-RAY diffraction, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=99.91 E-value=2.5e-23 Score=167.33 Aligned_cols=170 Identities=16% Similarity=0.100 Sum_probs=126.2
Q ss_pred CCCEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCC-----CCHHHHHHHCCCHHHHHHCCCCHH
Q ss_conf 883799975278898772604899999983897280400226621788877-----857898985799889960799979
Q gi|254780661|r 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL-----PDPEAVFITGITPQKALRDGVVEA 76 (471)
Q Consensus 2 ~~~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~-----p~p~a~~v~git~~~~~~~~~~~~ 76 (471)
-+++||+|+||||++|..|+|||||||++|.+++++++.....+++.+... ........++........ .....
T Consensus 8 ~~~lV~lD~ETTGLdp~~d~IIEIaaV~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 86 (194)
T 2gbz_A 8 NDRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHSLETLEAMDEWNRNQHRRSGLWQRVLDS-QVTHA 86 (194)
T ss_dssp CCEEEEEEEEESCSCTTTCCEEEEEEEEEETTCCEEEECCCEECCCCHHHHHTSCSHHHHHHHHHTHHHHHHHC-CCCHH
T ss_pred CCCEEEEEEECCCCCCCCCEEEEEEEEEECCCCEEECCCCEEEECCCHHHCCCCCCCCCEEEECCCHHHHHHCC-CCCHH
T ss_conf 89989998778999999983799999998289605012543201475110243334541133123113430135-65799
Q ss_pred HHHHHHHHHHHCC---CCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9999999995117---9659995055789999999998507853213256887100158888655565321002444445
Q gi|254780661|r 77 EFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDD 153 (471)
Q Consensus 77 e~~~~i~~~~~~~---~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~ 153 (471)
+....+......+ +..++++|+..||..|++..+.+.... ..+..+|++.+.+....++|..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~~~l~~~~~~~~~~-------~~~~~iD~~~~~~~~~~~~~~~-------- 151 (194)
T 2gbz_A 87 QAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMSRLERY-------FHYRNLDVSTIKELARRWAPAV-------- 151 (194)
T ss_dssp HHHHHHHHHHTTTCCTTSSCEEESSHHHHHHHHHHHCHHHHHH-------SCSCEEEHHHHHHHHHHHCGGG--------
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHCHHH--------
T ss_conf 9999999876640468974111342133099999999986110-------4897310899999988759143--------
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4433108989987188764310133318999999999986422689
Q gi|254780661|r 154 GATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199 (471)
Q Consensus 154 ~~~~~kL~~la~~n~i~~~~aH~A~~D~~~t~~l~k~i~~~~p~~~ 199 (471)
..|+...+||||++||.+|++++|.+++..+.+-
T Consensus 152 ------------~~~~~~~~aHrAl~Dv~aTi~llk~yr~~~~~~~ 185 (194)
T 2gbz_A 152 ------------ASGFAKSSAHTALSDVRDSIDELRHYRQFMGTLG 185 (194)
T ss_dssp ------------GTTCCCCSCCSHHHHHHHHHHHHHHHHTTSHHHH
T ss_pred ------------HHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf ------------4079998984878999999999999999658779
No 13
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=99.90 E-value=2.1e-22 Score=161.37 Aligned_cols=172 Identities=11% Similarity=0.104 Sum_probs=128.6
Q ss_pred CCEEEEECCCC---CCCCC-CCEEEEEEEEEEC-CCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHH
Q ss_conf 83799975278---89877-2604899999983-8972804002266217888778578989857998899607999799
Q gi|254780661|r 3 NHFVIYDYETF---GRDVA-LDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAE 77 (471)
Q Consensus 3 ~~~v~~D~ETt---G~~~~-~~~iiq~~~i~~d-~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e 77 (471)
..||++|+||| |..+. .++|||||||++| .++.++++|+. +|+|......++.+..+||||.+++.+++ ++.+
T Consensus 128 d~~vViD~EtTc~~g~~~~~~~EIIEIgaV~vd~~~~~i~d~F~s-yVkP~~~~~ls~~~~eLTGITqe~Vd~Ap-~f~e 205 (349)
T 1zbu_A 128 DYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQ-YVRPEINTQLSDFCISLTGITQDQVDRAD-TFPQ 205 (349)
T ss_dssp SEEEECCCEECCCTTCCTTCCCCEEECCEEEEETTTTEEEEEECC-BEECSSSCSCCHHHHHHHCCCHHHHHTSE-EHHH
T ss_pred CEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEE-EECCCCCCCCCHHHHHHHCCCHHHHHCCC-CHHH
T ss_conf 989999984368899998999727999889998689949667886-88988898789889977296999985598-7999
Q ss_pred HHHHHHHHHHCC-----CC-EEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999995117-----96-599950557899999999985078532132568871001588886555653210024444
Q gi|254780661|r 78 FSRRIHQFFSVP-----NT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSR 151 (471)
Q Consensus 78 ~~~~i~~~~~~~-----~~-~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~ 151 (471)
+++++.+++... .. +++++. ..++..||+..+.+..++...+ ....+|+..+.+..+
T Consensus 206 Vl~~f~~~l~~~~lv~~~~~~fv~~g-~~Dl~~fL~~~~~~~~i~~p~~----~~~~iDl~~~~~~~~------------ 268 (349)
T 1zbu_A 206 VLKKVIDLMKLKELGTKYKYSLLTDG-SWDMSKFLNIQCQLSRLKYPPF----AKKWINIRKSYGNFY------------ 268 (349)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESS-SHHHHTHHHHHHHHTTBCCCGG----GSEEEEHHHHHHHHH------------
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEECC-HHHHHHHHHHHHHHHCCCCCCC----CCCEEEHHHHHHHHH------------
T ss_conf 99999999852434556606887053-8889999999999958998632----576665999999985------------
Q ss_pred CCCCCCCCHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 454433108989987188764-310133318999999999986
Q gi|254780661|r 152 DDGATSFKLQDLALANGIEHV-NAHDAKADVYATLALVWLIRE 193 (471)
Q Consensus 152 ~~~~~~~kL~~la~~n~i~~~-~aH~A~~D~~~t~~l~k~i~~ 193 (471)
..+.++++|+.+++.+||+.. ++|+|+.||.+|+.|+..|..
T Consensus 269 ~~~~~~~~L~~l~e~lgI~~eG~~H~ALdDA~~tA~Il~~LL~ 311 (349)
T 1zbu_A 269 KVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQ 311 (349)
T ss_dssp TCCGGGGSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 6887898999999976999999880969999999999999997
No 14
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=99.89 E-value=4e-23 Score=166.01 Aligned_cols=159 Identities=16% Similarity=0.121 Sum_probs=118.5
Q ss_pred CCCEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHH
Q ss_conf 88379997527889877260489999998389728040022662178887785789898579988996079997999999
Q gi|254780661|r 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRR 81 (471)
Q Consensus 2 ~~~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~ 81 (471)
++.||++|+||||++|..+++|+++||+ |.+|+++ ++. +|+|.. .+.|.+..+||||++++.++ .++.++++.
T Consensus 4 ~~~~V~iD~ETtGl~~~~~~~i~~~aiv-~~~g~~v--~~~-~v~p~~--~i~~~~~~i~GIt~e~l~~~-~~~~~v~~~ 76 (189)
T 1wlj_A 4 SREVVAMDCEMVGLGPHRESGLARCSLV-NVHGAVL--YDK-FIRPEG--EITDYRTRVSGVTPQHMVGA-TPFAVARLE 76 (189)
T ss_dssp --CEEEEEEEEEEETTTTEEEEEEEEEE-CTTCCEE--EEE-EEECSS--CEEECCHHHHCCCHHHHTTC-EEHHHHHHH
T ss_pred CCCEEEEEEECCCCCCCCCCEEEEEEEE-EECCCEE--EEE-EECCCC--CCCHHHCCCCCCCHHHHHCC-CCHHHHHHH
T ss_conf 9989999768088899998679999999-8379599--999-866999--89830024889997896227-847888999
Q ss_pred HHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 99995117965999505578999999999850785321325688710015888865556532100244444544331089
Q gi|254780661|r 82 IHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161 (471)
Q Consensus 82 i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~ 161 (471)
+.+++. +.++|||| +.||..||+..+.+.... ....|.+...+.. . ...+.++|.
T Consensus 77 ~~~~~~--~~~lV~hn-~~fD~~~L~~~~~~~~~~---------~~~~~~~~~~~~~---~----------~~~~~~~L~ 131 (189)
T 1wlj_A 77 ILQLLK--GKLVVGHD-LKHDFQALKEDMSGYTIY---------DTSTDRLLWREAK---L----------DHCRRVSLR 131 (189)
T ss_dssp HHHHHT--TSEEEESS-HHHHHHHTTCCCTTCEEE---------EGGGCHHHHHHHT---C---------------CCHH
T ss_pred HHHHHC--CCEEEEEC-HHHHHHHHHHHCHHCCCC---------CCCHHHHHHHHHH---H----------CCCCCCCHH
T ss_conf 987631--34589735-687899999867032665---------8412169999987---3----------667788999
Q ss_pred HHHHHH-CCC---CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 899871-887---6431013331899999999998
Q gi|254780661|r 162 DLALAN-GIE---HVNAHDAKADVYATLALVWLIR 192 (471)
Q Consensus 162 ~la~~n-~i~---~~~aH~A~~D~~~t~~l~k~i~ 192 (471)
.||... |+. ..++|+|++||.+|++|++++.
T Consensus 132 ~L~~~~l~~~i~~~~~~H~Al~DA~at~~l~~~~~ 166 (189)
T 1wlj_A 132 VLSERLLHKSIQNSLLGHSSVEDARATMELYQISQ 166 (189)
T ss_dssp HHHHHHTCCCCSCCTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999809877899988881999999999999999
No 15
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli K12} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=99.88 E-value=7.8e-22 Score=157.69 Aligned_cols=166 Identities=14% Similarity=0.060 Sum_probs=116.6
Q ss_pred CCEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCC----CCCCHHHHHHHCCCHHHHHHCCCCHHHH
Q ss_conf 837999752788987726048999999838972804002266217888----7785789898579988996079997999
Q gi|254780661|r 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADD----YLPDPEAVFITGITPQKALRDGVVEAEF 78 (471)
Q Consensus 3 ~~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~----~~p~p~a~~v~git~~~~~~~~~~~~e~ 78 (471)
+|+||+|+||||++|..|+|||||+|++|.++.++++.....+.+... ..+.+..........+.......+...+
T Consensus 5 ~~lv~lD~ETTGL~p~~D~IIeIaaV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (180)
T 2igi_A 5 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREA 84 (180)
T ss_dssp GCEEEEEEEESSSCTTTCCEEEEEEEEECTTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCCCHHHH
T ss_pred CCEEEEEEECCCCCCCCCEEEEEEEEEEECCCEEEEECCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHH
T ss_conf 97899986789999999847999999998995365413300012221246643466730102553301023454239999
Q ss_pred HHHHHHHHHCC---CCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999995117---965999505578999999999850785321325688710015888865556532100244444544
Q gi|254780661|r 79 SRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGA 155 (471)
Q Consensus 79 ~~~i~~~~~~~---~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~ 155 (471)
...+...+... +..++++|+..||..|++..+.+.... ...+.+|+....+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~~~l~~~~~~~~~~-------~~~~~lD~~~~~~~~~---------------- 141 (180)
T 2igi_A 85 ELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAY-------FHYRYLDVSTLKELAR---------------- 141 (180)
T ss_dssp HHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHH-------SCSCEEETHHHHHHHH----------------
T ss_pred HHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHCCC-------CCCCEECHHHHHHHHH----------------
T ss_conf 99899988751257872564575401699999889973001-------5885132677999998----------------
Q ss_pred CCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3310898998718876431013331899999999998642
Q gi|254780661|r 156 TSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKK 195 (471)
Q Consensus 156 ~~~kL~~la~~n~i~~~~aH~A~~D~~~t~~l~k~i~~~~ 195 (471)
+...+..+|+.+.+||+|++||.+|++++|..++..
T Consensus 142 ----~~~~~~~~~~~~~~aHrAl~Dv~~ti~~l~~~r~~~ 177 (180)
T 2igi_A 142 ----RWKPEILDGFTKQGTHQAMDDIRESVAELAYYREHF 177 (180)
T ss_dssp ----HHCGGGGGGSCCCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ----HHCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf ----649787729999997185899999999999999987
No 16
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=98.95 E-value=4e-09 Score=75.99 Aligned_cols=151 Identities=13% Similarity=-0.017 Sum_probs=89.7
Q ss_pred EEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHHHH
Q ss_conf 79997527889877260489999998389728040022662178887785789898579988996079997999999999
Q gi|254780661|r 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQ 84 (471)
Q Consensus 5 ~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~i~~ 84 (471)
+++||+||||+++..+.|+-+++. |.+. +.+..+ .+. + ..+..+.+..
T Consensus 1 ~~v~DiET~gL~~~~~~i~~i~~~--d~~~---~~~~~~----~~~---~--------------------~~~~~~~l~~ 48 (698)
T 1x9m_A 1 MIVSDIEANALLESVTKFHCGVIY--DYST---AEYVSY----RPS---D--------------------FGAYLDALEA 48 (698)
T ss_dssp CEEEEEEESSCGGGCCCEEEEEEE--ETTT---TEEEEE----CGG---G--------------------HHHHHHHHHH
T ss_pred CEEEECCCCCCCCCCCEEEEEEEE--ECCC---CEEEEE----CCC---C--------------------HHHHHHHHHH
T ss_conf 989991689977567879999999--7899---728984----765---4--------------------0579999999
Q ss_pred HHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCHHH
Q ss_conf 9511796599950557899999999985078532132568871001588886555653210024--44445443310898
Q gi|254780661|r 85 FFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQW--PSRDDGATSFKLQD 162 (471)
Q Consensus 85 ~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~--~~~~~~~~~~kL~~ 162 (471)
.+... ..+||||.++||.++|+..+-..+...+. ......+|+|-++|++ .|+.... .....+...++|+.
T Consensus 49 ~l~~~-~~lVgHN~~~FD~~~L~k~~g~~~~~~~~---~~~~~v~DTmi~s~ll---~p~~~~~~~~~~~~~~~~hsL~a 121 (698)
T 1x9m_A 49 EVARG-GLIVFHNGHKYDVPALTKLAKLQLNREFH---LPRENCIDTLVLSRLI---HSNLKDTDMGLLRSGKLPGALEA 121 (698)
T ss_dssp HHHTT-CCEEESSTTTTHHHHHHHHHHHHHCCCCC---CCGGGEEEHHHHHHHH---TTTSCCCTTTTSCGGGSCSCCCH
T ss_pred HHHCC-CEEEECCCHHCCHHHHHHHHCCCCCCCCC---CCCCCEEEHHHHHHHH---CCCCCCCCCHHHHCCCCCCCHHH
T ss_conf 98559-96997572320899998873874233456---6778750277887663---99864443112202667878899
Q ss_pred HHHHHCCCCC-----------------------------CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9987188764-----------------------------3101333189999999999864
Q gi|254780661|r 163 LALANGIEHV-----------------------------NAHDAKADVYATLALVWLIREK 194 (471)
Q Consensus 163 la~~n~i~~~-----------------------------~aH~A~~D~~~t~~l~k~i~~~ 194 (471)
++...|..-+ -.+-|..||.+|..|.+.+...
T Consensus 122 ~g~rlg~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~s~em~~Ya~~Dv~iT~~L~~~l~~~ 182 (698)
T 1x9m_A 122 WGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSD 182 (698)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGTSCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998586543137776432221022334413343348999999998999999999999998
No 17
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1 strain kos} PDB: 1dml_B*
Probab=98.75 E-value=3.5e-07 Score=63.50 Aligned_cols=171 Identities=18% Similarity=0.147 Sum_probs=99.4
Q ss_pred CEEEEECCCCC---C-----CC--CCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHH--HHHHCCCHHHHHHC
Q ss_conf 37999752788---9-----87--7260489999998389728040022662178887785789--89857998899607
Q gi|254780661|r 4 HFVIYDYETFG---R-----DV--ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFITGITPQKALRD 71 (471)
Q Consensus 4 ~~v~~D~ETtG---~-----~~--~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a--~~v~git~~~~~~~ 71 (471)
..+-||+||.+ . ++ ..|.|+||+.+....+........ +++. .....|.... ..-.++....+..-
T Consensus 321 rvlsfDIE~~s~~~~~~~FP~a~~~~D~Ii~IS~~~~~~g~~~~~~~~-l~tl-~~~~~~~~~~~~~~~~~~~~~~V~~f 398 (1193)
T 2gv9_A 321 KLMCFDIECKAGGEDELAFPVAGHPEDLVIQISCLLYDLSTTALEHVL-LFSL-GSCDLPESHLNELAARGLPTPVVLEF 398 (1193)
T ss_dssp EEEEEEEEEECCSSCTTSCCCTTSTTSEEEEEEEEEEETTTCCEEEEE-EEEE-SCCCCCHHHHHHHHHTTCCCCEEEEE
T ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEEE-EEEC-CCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 799998786779888888989888898289999999876887664599-9944-77555533223444457898679980
Q ss_pred CCCHHHHHHHHHHHHHCCCC-EEEEEECHHHHHHHHHHHHHHHCCCC---CC----------------------CCCCCC
Q ss_conf 99979999999999511796-59995055789999999998507853---21----------------------325688
Q gi|254780661|r 72 GVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDS---YR----------------------WSWDNG 125 (471)
Q Consensus 72 ~~~~~e~~~~i~~~~~~~~~-~~ig~N~~~FD~~~lr~~~~r~~~~~---y~----------------------~~~~~~ 125 (471)
+ +|.+++..+.+++.+.++ +++|||+.+||.++|-.=.-+..... +. .....|
T Consensus 399 ~-sE~eLL~~F~~~i~~~dPDIItGYNi~~FDlpYL~~Ra~~l~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~i~G 477 (1193)
T 2gv9_A 399 D-SEFEMLLAFMTLVKQYGPEFVTGYNIINFDWPFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIGQSHFQKRSKIKVNG 477 (1193)
T ss_dssp S-SHHHHHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCTTTSSBSSSCCEEECC----------CEEETT
T ss_pred C-CHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHCCCCCCCCCEECCCCCCCCCCCCEEEECC
T ss_conf 9-999999999999765399889972554774789999999977998788275576566202035666556540462346
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCC------CC---------C------CHHHHHHHHH
Q ss_conf 7100158888655565321002444445443310898998718876------43---------1------0133318999
Q gi|254780661|r 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH------VN---------A------HDAKADVYAT 184 (471)
Q Consensus 126 ~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~~la~~n~i~~------~~---------a------H~A~~D~~~t 184 (471)
.-.+|++.+++.- -.-+||+|+.+|+..--.. .. . .=.+.|+..+
T Consensus 478 ri~iDl~~~~k~~--------------~kL~sY~L~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~~~~~l~~Y~l~Da~lv 543 (1193)
T 2gv9_A 478 MVNIDMYGIITDK--------------IKLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLLV 543 (1193)
T ss_dssp BEEEEHHHHHTTT--------------CCCSCCCHHHHHHHTSCCCCCCCCTTTHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEHHHHHHHH--------------CCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6998437887663--------------04666889999999727777666888888887656778999999998879999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780661|r 185 LALVWLI 191 (471)
Q Consensus 185 ~~l~k~i 191 (471)
..|+..+
T Consensus 544 ~~L~~kl 550 (1193)
T 2gv9_A 544 GQLFFKF 550 (1193)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999998
No 18
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=98.71 E-value=1.6e-06 Score=59.32 Aligned_cols=178 Identities=17% Similarity=0.127 Sum_probs=115.5
Q ss_pred CCEEEEECCCCCCCCC-----CC----------------EEEEEEEEEECCCCEECC-----EEEEEEECCCCCCCCCHH
Q ss_conf 8379997527889877-----26----------------048999999838972804-----002266217888778578
Q gi|254780661|r 3 NHFVIYDYETFGRDVA-----LD----------------RPAQFAGVRVDRQWEKIE-----STEVFFCKPADDYLPDPE 56 (471)
Q Consensus 3 ~~~v~~D~ETtG~~~~-----~~----------------~iiq~~~i~~d~~~~~~~-----~~~~~~~~~~~~~~p~p~ 56 (471)
-.||-.|+|-||+-.. .+ +|||+|.-..+.+++... +|+ +..-+..+. -+++
T Consensus 24 ~~fvAiDtEfpGl~~~~~~~~~~~~~~~Y~~lr~nv~~~~iiQlGlt~~~~~g~~~~~~~~w~FN-f~f~~~~d~-~~~~ 101 (252)
T 2d5r_A 24 YNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFN-FKFNLTEDM-YAQD 101 (252)
T ss_dssp CCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEECTTSCCCSSCCEEEEE-BCCCTTTSC-CCHH
T ss_pred CCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCEEEEE-EEECCCCCC-CCHH
T ss_conf 99899986706845788765579989999999987754030378989862478778886127799-877797665-3778
Q ss_pred H---HHHHCCCHHHHHHCCCCHHHHHHHHHHHH--HCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 9---89857998899607999799999999995--117965999505578999999999850785321325688710015
Q gi|254780661|r 57 A---VFITGITPQKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDL 131 (471)
Q Consensus 57 a---~~v~git~~~~~~~~~~~~e~~~~i~~~~--~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~ 131 (471)
+ +.-+|+.=..+.+.|.+..++...+...- ...+..+|+||+ .||..+|-+.++..-+|. ...+.
T Consensus 102 Si~fL~~~GfDF~k~~~~GI~~~~f~ell~~s~~~~~~~v~wv~f~g-~yD~~~L~k~l~g~~LP~---------~~~~F 171 (252)
T 2d5r_A 102 SIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHS-GYDFGYLIKILTNSNLPE---------EELDF 171 (252)
T ss_dssp HHHHHHHHTCCHHHHHHHCBCHHHHHHHHHTTTSSSSSSCEEEESSC-HHHHHHHHHHHHTSCCCS---------SHHHH
T ss_pred HHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECC-HHHHHHHHHHHCCCCCCC---------CHHHH
T ss_conf 99999986997789998097389999988861143258973787134-578999999980999997---------78999
Q ss_pred HHHHHHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8888655565321002444--44544331089899871887-6431013331899999999998642
Q gi|254780661|r 132 LDVMRAIYAFSPDGIQWPS--RDDGATSFKLQDLALANGIE-HVNAHDAKADVYATLALVWLIREKK 195 (471)
Q Consensus 132 l~~~~~~~~~~p~~~~~~~--~~~~~~~~kL~~la~~n~i~-~~~aH~A~~D~~~t~~l~k~i~~~~ 195 (471)
+.+ +..+.|..+..-. ..-+.-+-.|+.+|+..|+. .+.+|.|-+|+..|..++-.+++..
T Consensus 172 ~~~---~~~~Fp~~yD~K~i~~~~~~~~~~L~~la~~L~v~r~g~~H~AG~DSllT~~~F~~l~~~~ 235 (252)
T 2d5r_A 172 FEI---LRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMF 235 (252)
T ss_dssp HHH---HHHHCSCEEEHHHHGGGCTTCCSSHHHHHHHHTCCCCSSTTSHHHHHHHHHHHHHHHHHHT
T ss_pred HHH---HHHHCCHHEEHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999---9997734604698984456657649999997699987987653678999999999999997
No 19
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=98.65 E-value=2.8e-06 Score=57.66 Aligned_cols=178 Identities=19% Similarity=0.128 Sum_probs=115.9
Q ss_pred CCEEEEECCCCCCCCC-----CC----------------EEEEEEEEEECCCCEEC-----CEEEEEEECCCCCCCCCHH
Q ss_conf 8379997527889877-----26----------------04899999983897280-----4002266217888778578
Q gi|254780661|r 3 NHFVIYDYETFGRDVA-----LD----------------RPAQFAGVRVDRQWEKI-----ESTEVFFCKPADDYLPDPE 56 (471)
Q Consensus 3 ~~~v~~D~ETtG~~~~-----~~----------------~iiq~~~i~~d~~~~~~-----~~~~~~~~~~~~~~~p~p~ 56 (471)
-.||-.|+|-+|+-.. .+ .|||+|.-..|.+++.- -+|+ +..-+..+. -.++
T Consensus 45 ~~fVAiDtEFpGiv~~p~~~~~~t~d~rY~~lr~nVd~l~iIQlGLt~~~~~g~~p~~~~twqFN-F~f~~~~d~-~~~~ 122 (333)
T 2p51_A 45 YPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACTWQFN-FTFNLQDDM-YAPE 122 (333)
T ss_dssp SCEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEEEEEEECTTSCCCTTCSEEEEE-BCCCTTTSC-CCHH
T ss_pred CCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCEEEEEE-EEECCCCCC-CCHH
T ss_conf 99899953317725678766689789999999975421451479999772588878886379998-797786655-0478
Q ss_pred H---HHHHCCCHHHHHHCCCCHHHHHHHHHH--HHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 9---898579988996079997999999999--95117965999505578999999999850785321325688710015
Q gi|254780661|r 57 A---VFITGITPQKALRDGVVEAEFSRRIHQ--FFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDL 131 (471)
Q Consensus 57 a---~~v~git~~~~~~~~~~~~e~~~~i~~--~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~ 131 (471)
+ +.-+|+.=..+.+.|++..++.+.+.. .....+..||++|+ .||..+|-..++..-||.- .-+.
T Consensus 123 SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~sglv~~~~v~Wvtfhg-~yD~~yLlk~l~g~~LP~~---------~~eF 192 (333)
T 2p51_A 123 SIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHS-GYDFAYLLKAMTQIPLPAE---------YEEF 192 (333)
T ss_dssp HHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTTTSSSCTTCEEEESSC-HHHHHHHHHHHHCSCCCSS---------HHHH
T ss_pred HHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECC-HHHHHHHHHHHHCCCCCCC---------HHHH
T ss_conf 99999974967788986099888889999850554168873998066-1679999999708878867---------8999
Q ss_pred HHHHHHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88886555653210024444--4544331089899871887-6431013331899999999998642
Q gi|254780661|r 132 LDVMRAIYAFSPDGIQWPSR--DDGATSFKLQDLALANGIE-HVNAHDAKADVYATLALVWLIREKK 195 (471)
Q Consensus 132 l~~~~~~~~~~p~~~~~~~~--~~~~~~~kL~~la~~n~i~-~~~aH~A~~D~~~t~~l~k~i~~~~ 195 (471)
+. .+..+.|..+..-.- ......-.|+.||+..|+. .+.+|.|-+|+..|..++.+++++.
T Consensus 193 ~~---~l~~~FP~vYD~Kyia~~~~~~~~gL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~~ 256 (333)
T 2p51_A 193 YK---ILCIYFPKNYDIKYIMKSVLNNSKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSRY 256 (333)
T ss_dssp HH---HHHHHSSSEEEHHHHHTTTTCCCCCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HH---HHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99---99997762871899997615667659999997499876776453058999999999999986
No 20
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=98.48 E-value=5.5e-06 Score=55.83 Aligned_cols=189 Identities=18% Similarity=0.171 Sum_probs=111.0
Q ss_pred CCEEEEECCCCCCCCC-----CC----------------EEEEEEEEEECCCCEECC------EEEEEEECCCCCCCCCH
Q ss_conf 8379997527889877-----26----------------048999999838972804------00226621788877857
Q gi|254780661|r 3 NHFVIYDYETFGRDVA-----LD----------------RPAQFAGVRVDRQWEKIE------STEVFFCKPADDYLPDP 55 (471)
Q Consensus 3 ~~~v~~D~ETtG~~~~-----~~----------------~iiq~~~i~~d~~~~~~~------~~~~~~~~~~~~~~p~p 55 (471)
-.||-.|+|-||+... .+ .|||+|.-..+.+++... +|+ +..-+..+. -++
T Consensus 38 ~~fVAiD~Ef~Gi~~~~~~~~~~t~~~rY~~lk~nv~~~~iiQlGlt~f~~~g~~~~~~~~~w~FN-f~~~~~~~~-~~~ 115 (289)
T 1uoc_A 38 YNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDANGNKPDNGPSTWQFN-FEFDPKKEI-MST 115 (289)
T ss_dssp SCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEECTTCCCCSSSCSEEEEE-BCCCTTCCC-CCH
T ss_pred CCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCEEEEEE-EECCCCCCC-CCH
T ss_conf 998999625178457888666899999999999866436324699998704887688871478997-744862023-257
Q ss_pred HH---HHHHCCCHHHHHHCCCCHHHHHHHHHH--HHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCC------C
Q ss_conf 89---898579988996079997999999999--951179659995055789999999998507853213256------8
Q gi|254780661|r 56 EA---VFITGITPQKALRDGVVEAEFSRRIHQ--FFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD------N 124 (471)
Q Consensus 56 ~a---~~v~git~~~~~~~~~~~~e~~~~i~~--~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~------~ 124 (471)
.+ +.-+|+.=....+.|++.....+.+.. .+.+.+..+||||+ .+|..++-..|+-.-+|.-..... -
T Consensus 116 ~Si~fL~~~G~DFnk~~~~GI~~~~f~~~~~~s~l~~~~~~~wv~f~g-~yD~~yl~k~l~~~~LP~~~~~F~~~~~~~F 194 (289)
T 1uoc_A 116 ESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHA-AYDLGFLINILMNDSMPNNKEDFEWWVHQYM 194 (289)
T ss_dssp HHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTSSCSSCTTSEEEESST-THHHHHHHHHHTTSCCCSSHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHCCHHHCCCCEEEEECC-HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC
T ss_conf 789999985998689997199888888998750044247862896043-5579999999718989999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8710015888865556532100244444544331089899871887-6431013331899999999998642
Q gi|254780661|r 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVYATLALVWLIREKK 195 (471)
Q Consensus 125 ~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~~la~~n~i~-~~~aH~A~~D~~~t~~l~k~i~~~~ 195 (471)
+ ...|+=-+++.+..+..............-...|+.+|+..|+. .+.+|.|-+|+..|..++-.+++..
T Consensus 195 p-~iyDtK~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~va~~l~v~r~g~~HeAG~DS~lTg~~F~~l~~~~ 265 (289)
T 1uoc_A 195 P-NFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSIFTTTGGQSLLMLLSFCQLSKLS 265 (289)
T ss_dssp S-SEEEHHHHHHHHTTTCC-------------CCSHHHHHHHTTCCCCGGGGSHHHHHHHHHHHHHHHHHHT
T ss_pred C-CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 6-2613999998621335754343322101234888899987299877888660789999999999999987
No 21
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=98.46 E-value=5e-06 Score=56.09 Aligned_cols=101 Identities=13% Similarity=0.119 Sum_probs=64.7
Q ss_pred CCEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHH
Q ss_conf 83799975278898772604899999983897280400226621788877857898985799889960799979999999
Q gi|254780661|r 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRI 82 (471)
Q Consensus 3 ~~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~i 82 (471)
...+.||+||||+++..++|+-++ +.++. +. .+++-+.... .. . ....+.-++...+
T Consensus 26 ~~~~a~D~ETt~ld~~~~~ivgis-~s~~~-~~------~~yipi~h~~-~~---------~-----~~~~~~~~vl~~L 82 (605)
T 2kfn_A 26 APVFAFDTETDSLDNISANLVGLS-FAIEP-GV------AAYIPVAHDY-LD---------A-----PDQISRERALELL 82 (605)
T ss_dssp SSSEEEEEEESCSCTTTCCEEEEE-EEEET-TE------EEEEECCCCS-TT---------C-----CCCCCHHHHHHHH
T ss_pred CCEEEEEEECCCCCCCCCEEEEEE-EECCC-CE------EEEEEECCCC-CC---------C-----CCCCCHHHHHHHH
T ss_conf 994999831799983657499999-98249-85------9999822666-77---------7-----5558999999999
Q ss_pred HHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 99951179659995055789999999998507853213256887100158888655
Q gi|254780661|r 83 HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAI 138 (471)
Q Consensus 83 ~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~ 138 (471)
.++|.+.+...|||| +.||..+|+ ++++++ .+..+|++-..+++
T Consensus 83 k~~l~~~~i~kV~HN-akFD~~~L~----~~Gi~l-------~~~~~DTmiaa~ll 126 (605)
T 2kfn_A 83 KPLLEDEKALKVGQN-LKYDRGILA----NYGIEL-------RGIAFDTMLESYIL 126 (605)
T ss_dssp HHHHTCTTSCEEESS-HHHHHHHHH----TTTCCC-------CCEEEEHHHHHHHH
T ss_pred HHHHHCCCCCEEEEC-HHHHHHHHH----HCCCCC-------CCCHHHHHHHHHHH
T ss_conf 999818999799972-699999999----779988-------98402077787772
No 22
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA- binding, DNA-directed DNA polymerase, exonuclease; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=98.31 E-value=9.6e-06 Score=54.26 Aligned_cols=183 Identities=22% Similarity=0.231 Sum_probs=104.8
Q ss_pred CEEEEECCCCC-----CCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHH
Q ss_conf 37999752788-----9877260489999998389728040022662178887785789898579988996079997999
Q gi|254780661|r 4 HFVIYDYETFG-----RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEF 78 (471)
Q Consensus 4 ~~v~~D~ETtG-----~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~ 78 (471)
..+-||+||++ -++..|.|+|++.+.....-........ ++- ....+. .|. .+...+ +|.++
T Consensus 250 rilsfDIE~~~~~g~fp~~~~d~ii~I~~~~~~~g~~~~~~~~~-~~~--~~~~~~------~~~---~v~~~~-sE~eL 316 (919)
T 3iay_A 250 RIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIRNV-FTL--NTCSPI------TGS---MIFSHA-TEEEM 316 (919)
T ss_dssp EEEEEEEEECCCTTSCCCTTTCCEEEEEEEEEETTCSSCSEEEE-EEE--SCCCCB------TTB---EEEEES-SHHHH
T ss_pred EEEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEE-ECC--CCCCCC------CCC---EEEEEC-CHHHH
T ss_conf 79999999786899886433451124678762267766426413-415--776788------996---799819-99999
Q ss_pred HHHHHHHHHCCCC-EEEEEECHHHHHHHHHHHHHHHCCCCCC----------------------------CCCCCCCCCC
Q ss_conf 9999999511796-5999505578999999999850785321----------------------------3256887100
Q gi|254780661|r 79 SRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYR----------------------------WSWDNGNSRW 129 (471)
Q Consensus 79 ~~~i~~~~~~~~~-~~ig~N~~~FD~~~lr~~~~r~~~~~y~----------------------------~~~~~~~~~~ 129 (471)
+..+.+++...++ +++|||+.+||.++|..=.-+.+.+... .....|.-.+
T Consensus 317 L~~F~~~i~~~DPDII~GyNi~~FDlpYL~~Ra~~l~i~~~~~~gr~~~~~~~~~~~~~~~~~~g~~~~~~~~i~Gr~~i 396 (919)
T 3iay_A 317 LSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDGRLQL 396 (919)
T ss_dssp HHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBCCTTCEEE
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEE
T ss_conf 99999998662998798757857537999999998587514331765776644565643454335644228987378998
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH-CCCCCC-------------C-------CHHHHHHHHHHHHH
Q ss_conf 15888865556532100244444544331089899871-887643-------------1-------01333189999999
Q gi|254780661|r 130 DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN-GIEHVN-------------A-------HDAKADVYATLALV 188 (471)
Q Consensus 130 D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~~la~~n-~i~~~~-------------a-------H~A~~D~~~t~~l~ 188 (471)
|++..++..+ .-++|+|+.+|... |..-.+ . -=.+.||..+..|+
T Consensus 397 Dl~~~~~~~~--------------kl~sy~L~~Va~~~lg~~K~dv~~~~i~~~~~~~~e~~~~l~~Y~l~Da~l~~~L~ 462 (919)
T 3iay_A 397 DLLQFIQREY--------------KLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLM 462 (919)
T ss_dssp EHHHHHHHHC--------------CCSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EHHHHHHHHC--------------CCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7799998756--------------56723289999877158876430444357775352679999999854368899999
Q ss_pred HHHH---------HHHHHHHHHHHHHCCHHHHHH
Q ss_conf 9998---------642268999996238898997
Q gi|254780661|r 189 WLIR---------EKKPKLFEYLYDYRNKNQLRK 213 (471)
Q Consensus 189 k~i~---------~~~p~~~~~~l~~~~K~~v~~ 213 (471)
.++. .-.+-.|.+.+....-..+..
T Consensus 463 ~kl~~~~~~~e~a~i~gvp~~~~l~~g~~~~v~~ 496 (919)
T 3iay_A 463 EKLMALVNYTEMARVTGVPFSYLLARGQQIKVVS 496 (919)
T ss_dssp HHTTHHHHHHHHHHHHCCCHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEHH
T ss_conf 9999999999998864920232113322888524
No 23
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymerase, POL alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 3a2f_A* 2jgu_A* 1d5a_A
Probab=98.17 E-value=0.00012 Score=47.12 Aligned_cols=151 Identities=17% Similarity=0.092 Sum_probs=91.7
Q ss_pred CEEEEECCCCC---CCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHH
Q ss_conf 37999752788---987726048999999838972804002266217888778578989857998899607999799999
Q gi|254780661|r 4 HFVIYDYETFG---RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSR 80 (471)
Q Consensus 4 ~~v~~D~ETtG---~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~ 80 (471)
..+.||+||.+ .++..|.|++|+.. |..... .+.++. +..+. +..- .+|.+++.
T Consensus 136 ~i~s~DIE~~~~~~~~~~~d~I~~Is~~--~~~~~~-----vi~~~~----~d~~~-----------v~~~-~~E~~LL~ 192 (775)
T 1qht_A 136 TMLAFAIATLYHEGEEFGTGPILMISYA--DGSEAR-----VITWKK----IDLPY-----------VDVV-STEKEMIK 192 (775)
T ss_dssp CEEEEEEEECCCTTCCTTCSCEEEEEEE--CSSCEE-----EEESSC----CCCSS-----------EEEC-SCHHHHHH
T ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEEE--CCCCCE-----EEECCC----CCCCE-----------EEEC-CCHHHHHH
T ss_conf 6999998757876888777988999996--389707-----996778----78762-----------7871-99999999
Q ss_pred HHHHHHHCCCC-EEEEEECHHHHHHHHHHHHHHHCCCCCC----------------CCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999511796-5999505578999999999850785321----------------325688710015888865556532
Q gi|254780661|r 81 RIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYR----------------WSWDNGNSRWDLLDVMRAIYAFSP 143 (471)
Q Consensus 81 ~i~~~~~~~~~-~~ig~N~~~FD~~~lr~~~~r~~~~~y~----------------~~~~~~~~~~D~l~~~~~~~~~~p 143 (471)
.+.+++...++ +++|||+.+||.++|..=.-+.+.+.-. .....|.-.+|++..++..+
T Consensus 193 ~F~~~i~~~dPDII~GyN~~~FDlpyL~~R~~~l~i~~~~~r~~~~~~~~~~~~~~~~~i~Gri~iDl~~~~~~~~---- 268 (775)
T 1qht_A 193 RFLRVVREKDPDVLITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTI---- 268 (775)
T ss_dssp HHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHS----
T ss_pred HHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCEEECCCEEEEEECCEEEEEHHHHHHHHC----
T ss_conf 9999998719988987088775299999999982981010356887654344866899887989998399997646----
Q ss_pred HHCCCCCCCCCCCCCCHHHHHHHHC-CCCCC-------------------CCHHHHHHHHHHHHHHHH
Q ss_conf 1002444445443310898998718-87643-------------------101333189999999999
Q gi|254780661|r 144 DGIQWPSRDDGATSFKLQDLALANG-IEHVN-------------------AHDAKADVYATLALVWLI 191 (471)
Q Consensus 144 ~~~~~~~~~~~~~~~kL~~la~~n~-i~~~~-------------------aH~A~~D~~~t~~l~k~i 191 (471)
.-+|++|+.+|.... ....+ +.=.+.||..+..|+..+
T Consensus 269 ----------~l~sy~L~~Va~~~lg~~K~d~~~~~i~~~~~~~~~~~~~~~Y~~~D~~lv~~L~~kl 326 (775)
T 1qht_A 269 ----------NLPTYTLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREF 326 (775)
T ss_dssp ----------CCSCCCHHHHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------CCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----------6766668999999849975556999999987526329999999699999999998878
No 24
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli k-12} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=98.04 E-value=0.00015 Score=46.67 Aligned_cols=154 Identities=14% Similarity=0.124 Sum_probs=88.3
Q ss_pred CEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHHH
Q ss_conf 37999752788987726048999999838972804002266217888778578989857998899607999799999999
Q gi|254780661|r 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIH 83 (471)
Q Consensus 4 ~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~i~ 83 (471)
+.+-||+||++. ++|..+|.- +. +.. ..+...+.... .. ..+. .+..-+ +|.+++..+.
T Consensus 154 ~vlsfDIE~~~~----~~i~~I~~~--~~-~~~----~v~~~~~~~~~-~~-----~~~~---~v~~~~-sE~~LL~~F~ 212 (786)
T 3k59_A 154 KWVSIDIETTRH----GELYCIGLE--GC-GQR----IVYMLGPENGD-AS-----SLDF---ELEYVA-SRPQLLEKLN 212 (786)
T ss_dssp CEEEEEEEECTT----SCEEEEEEE--ET-TEE----EEEEESSCCSC-CT-----TCSS---EEEEES-SHHHHHHHHH
T ss_pred EEEEEEEEECCC----CCEEEEEEE--CC-CCC----EEEEEECCCCC-CC-----CCCE---EEEEEC-CHHHHHHHHH
T ss_conf 489998897588----988999985--69-983----89999467777-77-----7753---899969-9999999999
Q ss_pred HHHHCCCC-EEEEEECHHHHHHHHHHHHHHHCCCCCC-------------------CCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99511796-5999505578999999999850785321-------------------325688710015888865556532
Q gi|254780661|r 84 QFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYR-------------------WSWDNGNSRWDLLDVMRAIYAFSP 143 (471)
Q Consensus 84 ~~~~~~~~-~~ig~N~~~FD~~~lr~~~~r~~~~~y~-------------------~~~~~~~~~~D~l~~~~~~~~~~p 143 (471)
.++...+| +++|||+.+||.++|..-.-+++.+.-. .....|.-.+|++..++...
T Consensus 213 ~~i~~~DPDII~GyNi~~FDlpyL~~Ra~~~~i~~~lgr~~~~~~~~~~~~~~~~~~~~i~Gr~~iD~~~~~~~~~---- 288 (786)
T 3k59_A 213 AWFANYDPDVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAF---- 288 (786)
T ss_dssp HHHHHHCCSEEEESSTTTTHHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHHHHTT----
T ss_pred HHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEHHHHHHHHHHH----
T ss_conf 9999709999997288686799999999981897302676750230013434653787107688089999999975----
Q ss_pred HHCCCCCCCCCCCCCCHHHHHHHHCCCCCC---CCH-------------------HHHHHHHHHHHHHHH
Q ss_conf 100244444544331089899871887643---101-------------------333189999999999
Q gi|254780661|r 144 DGIQWPSRDDGATSFKLQDLALANGIEHVN---AHD-------------------AKADVYATLALVWLI 191 (471)
Q Consensus 144 ~~~~~~~~~~~~~~~kL~~la~~n~i~~~~---aH~-------------------A~~D~~~t~~l~k~i 191 (471)
-.-++|+|+.+|+..--.... .++ .+.||..+..|+.++
T Consensus 289 ---------~~~~sy~L~~va~~~L~~~k~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~D~~L~~~L~~kl 349 (786)
T 3k59_A 289 ---------WNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKNCELVTQIFHKT 349 (786)
T ss_dssp ---------CCCSCCSHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---------2554378899999975788666786775345542461458899999988899999999985
No 25
>3nae_A DNA polymerase, GP43; RB69 DNA polymerase; HET: DNA G35 DOC DTP; 2.00A {Enterobacteria phage RB69} PDB: 3lzi_A* 3lzj_A* 1ig9_A* 1q9x_A* 2atq_A* 2dy4_A* 2oyq_A* 2ozm_A* 2ozs_A* 2p5g_A* 2p5o_A* 1q9y_A* 3l8b_A* 3lds_A* 3cq8_A* 1ih7_A* 1clq_A* 1waf_A* 1waj_A* 3cfr_A* ...
Probab=97.95 E-value=0.00015 Score=46.62 Aligned_cols=146 Identities=14% Similarity=0.033 Sum_probs=77.8
Q ss_pred CEEEEECCCCCC----CCC--CCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHH---------HCCCHHHH
Q ss_conf 379997527889----877--260489999998389728040022662178887785789898---------57998899
Q gi|254780661|r 4 HFVIYDYETFGR----DVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI---------TGITPQKA 68 (471)
Q Consensus 4 ~~v~~D~ETtG~----~~~--~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v---------~git~~~~ 68 (471)
+.+.||+||+.- +|. .+.|++|+... ... +++.++.....+..........+ .....+..
T Consensus 109 ~i~sfDIE~~s~~gFP~p~~~~d~Ii~Is~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (903)
T 3nae_A 109 RVANFDIEVTSPDGFPEPSQAKHPIDAITHYD--SID---DRFYVFDLLNSPYGNVEEWSIEIAAKLQEQGGDEVPSEII 183 (903)
T ss_dssp CEEEEEEEECCTTSSCCTTTCCSCEEEEEEEE--TTT---TEEEEEEECEETTEECCCCCHHHHHSCGGGTCCCCCHHHH
T ss_pred CEEEEEEEECCCCCCCCCCCCCCCEEEEEEEE--CCC---CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 18999976788999998344789489999996--379---8289984257676652110234454322234455653346
Q ss_pred -----HHCCCCHHHHHHHHHHHHHCCCC-EEEEEECHHHHHHHHHHHHHHH-------CCCCCCC---------------
Q ss_conf -----60799979999999999511796-5999505578999999999850-------7853213---------------
Q gi|254780661|r 69 -----LRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRN-------FYDSYRW--------------- 120 (471)
Q Consensus 69 -----~~~~~~~~e~~~~i~~~~~~~~~-~~ig~N~~~FD~~~lr~~~~r~-------~~~~y~~--------------- 120 (471)
..- .+|.+++..+.+++....| +++|||+.+||.++|..=.-+. .+.+...
T Consensus 184 ~~v~~~~~-~sE~eLL~~F~~~i~~~dPDII~GyN~~~FD~pYL~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 262 (903)
T 3nae_A 184 DKIIYMPF-DNEKELLMEYLNFWQQKTPVILTGWNVESFAIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMYGSREI 262 (903)
T ss_dssp TTEEEEEE-SSHHHHHHHHHHHHHHTCCSEEECSSTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCEEEEEEEETTEEEEE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCEE
T ss_conf 86289965-99999999999862505998999689877679999999998557632211254567652100002355314
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 25688710015888865556532100244444544331089899871
Q gi|254780661|r 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167 (471)
Q Consensus 121 ~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~~la~~n 167 (471)
....|...+|.+.+.+... .....|++|+.++...
T Consensus 263 ~~i~G~~~lD~~~l~~k~~------------~~~~~sy~Ld~va~~~ 297 (903)
T 3nae_A 263 ITLFGISVLDYIDLYKKFS------------FTNQPSYSLDYISEFE 297 (903)
T ss_dssp EEETTCEECCHHHHHHHHS------------CCCCSCCCHHHHHHHH
T ss_pred EEEECEEEEEHHHHHHHHH------------HHCCCCCHHHHHHHHH
T ss_conf 6660436752899999987------------6020112399999997
No 26
>2hhv_A DNA polymerase I; DNA replication, klenow fragment, protein- DNA complex, O6-methyl-guanine, transferase/DNA complex; HET: DNA 6OG SUC; 1.55A {Geobacillus stearothermophilus} SCOP: c.55.3.5 e.8.1.1 PDB: 2hhs_A* 2hht_A* 2hhu_A* 2hhq_A* 2hhx_A* 2hw3_A* 1nk4_A* 1l3t_A* 1l3u_A* 1l3v_A* 1l5u_A* 1njw_A* 1l3s_A* 1njy_A* 1njz_A* 1nk0_A* 1njx_A* 1nk5_A* 1nk6_A* 1nk7_A* ...
Probab=97.91 E-value=0.00013 Score=47.02 Aligned_cols=135 Identities=12% Similarity=0.013 Sum_probs=84.9
Q ss_pred CCCEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHH
Q ss_conf 88379997527889877260489999998389728040022662178887785789898579988996079997999999
Q gi|254780661|r 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRR 81 (471)
Q Consensus 2 ~~~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~ 81 (471)
..+-+.+|+||||+|+..++|+=++. .+ .++ .+ ++ +|. .+ .. ...
T Consensus 16 ~~~~~a~~~e~~~~~~~~~~ivGis~-~~-~~~----~~--~y-------~p~-~~-----~~--------------~~~ 60 (580)
T 2hhv_A 16 LADKAALVVEVVEENYHDAPIVGIAV-VN-EHG----RF--FL-------RPE-TA-----LA--------------DPQ 60 (580)
T ss_dssp GCSEEEEEEECCSSSCTTCCCCEEEE-EE-TTE----EE--EE-------CHH-HH-----TT--------------CHH
T ss_pred HCCCCEEEEECCCCCCCCCEEEEEEE-EE-CCC----EE--EE-------ECC-CC-----CC--------------HHH
T ss_conf 27884799976999735072899999-96-697----79--99-------453-54-----66--------------489
Q ss_pred HHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 99995117965999505578999999999850785321325688710015888865556532100244444544331089
Q gi|254780661|r 82 IHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161 (471)
Q Consensus 82 i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~ 161 (471)
+.+++.+.....|||| +.||..+|+. ++++. ....+|++-.. +++.|+ ..++.|+
T Consensus 61 l~~~l~d~~~~ki~hN-~k~D~~~L~~----~Gi~l-------~g~~~DTmiaa---~ll~~~----------~~~~~L~ 115 (580)
T 2hhv_A 61 FVAWLGDETKKKSMFD-SKRAAVALKW----KGIEL-------CGVSFDLLLAA---YLLDPA----------QGVDDVA 115 (580)
T ss_dssp HHHHHHCTTSEEEESS-HHHHHHHHHT----TTCCC-------CCEEEEHHHHH---HHHCGG----------GCCCSHH
T ss_pred HHHHHCCCCCCEEEEE-HHHHHHHHHH----CCCCC-------CCCEEHHHHHH---HHCCCC----------CCCCCHH
T ss_conf 9999669998658852-7999999997----88827-------99732899999---975999----------9988899
Q ss_pred HHHHHHCCCCC--------------------CCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89987188764--------------------310133318999999999986422
Q gi|254780661|r 162 DLALANGIEHV--------------------NAHDAKADVYATLALVWLIREKKP 196 (471)
Q Consensus 162 ~la~~n~i~~~--------------------~aH~A~~D~~~t~~l~k~i~~~~p 196 (471)
.++...+.... -+.-|..||.+|..|...+..+..
T Consensus 116 ~l~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~~~Ya~~Da~~t~~L~~~l~~~l~ 170 (580)
T 2hhv_A 116 AAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELR 170 (580)
T ss_dssp HHHHTTTCCSSCCHHHHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999867998784887518771002632799999999999999999999999975
No 27
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=97.47 E-value=0.0043 Score=37.24 Aligned_cols=101 Identities=17% Similarity=0.050 Sum_probs=58.3
Q ss_pred CEEEEECCCCCCC-----CCCCEEEEEEEEEECCCCEECCEEEEEEECC--CCCCCCCHHHHHHH--------CCCHHHH
Q ss_conf 3799975278898-----7726048999999838972804002266217--88877857898985--------7998899
Q gi|254780661|r 4 HFVIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKP--ADDYLPDPEAVFIT--------GITPQKA 68 (471)
Q Consensus 4 ~~v~~D~ETtG~~-----~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~--~~~~~p~p~a~~v~--------git~~~~ 68 (471)
....+|+||.+.. ...+.|++|+... .... ++.++.+.. ..+..+. ...... ++. ...
T Consensus 107 ~i~~~die~~~~~~~~~~~~~~~i~~I~~~~-~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~ 179 (388)
T 1noy_A 107 RVANCDIEVTGDKFPDPMKAEYEIDAITHYD-SIDD----RFYVFDLLNSMYGSVSKW-DAKLAAKLDCEGGDEVP-QEI 179 (388)
T ss_dssp CEEEEEEEECCSSCCCTTTCCSCEEEEEEEE-TTTT----EEEEEEECCCSSCCCCCC-CHHHHHSCGGGTCCCCC-HHH
T ss_pred EEEEEEEEECCCCCCCCCCCCCCCEEEEEEE-CCCC----EEEEEEECCCCCCCCCCC-CCCCCCCCCCCCCCCCC-CCC
T ss_conf 7988878743667678631002100478886-4798----599998515445666665-55555432233455655-456
Q ss_pred HHCC------CCHHHHHHHHHHHHHCCCC-EEEEEECHHHHHHHHHHHHHH
Q ss_conf 6079------9979999999999511796-599950557899999999985
Q gi|254780661|r 69 LRDG------VVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYR 112 (471)
Q Consensus 69 ~~~~------~~~~e~~~~i~~~~~~~~~-~~ig~N~~~FD~~~lr~~~~r 112 (471)
. .+ .+|.+++..+.+++....+ +++|||+.+||.+.|..-.-+
T Consensus 180 ~-d~v~~~~~~~E~~LL~~F~~~i~~~dPDiI~G~N~~~FD~pYL~~R~~~ 229 (388)
T 1noy_A 180 L-DRVIYMPFDNERDMLMEYINLWEQKRPAIFTGWNIEGFDVPYIMNRVKM 229 (388)
T ss_dssp H-TTEEEEEESCHHHHHHHHHHHHHHSCCSEEECSSTTTTHHHHHHHHHHH
T ss_pred C-CCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH
T ss_conf 7-8869998399999999999999873888898706788517899999998
No 28
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=97.43 E-value=0.00086 Score=41.71 Aligned_cols=167 Identities=20% Similarity=0.146 Sum_probs=84.9
Q ss_pred CEEEEECCCC----CC--CCCCC--EEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCH
Q ss_conf 3799975278----89--87726--0489999998389728040022662178887785789898579988996079997
Q gi|254780661|r 4 HFVIYDYETF----GR--DVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVE 75 (471)
Q Consensus 4 ~~v~~D~ETt----G~--~~~~~--~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~ 75 (471)
..+-||+||. |. +|..+ .||++|.. +.++.. .+.++ .+ .... . ....+-|++ +..- .+|
T Consensus 191 rilsfDIE~~s~~~~~fPdp~~~~~~ii~I~~~--~~~~~~--~~~~~-~~--~~~~-~-~~~~~~~~~---v~~f-~sE 257 (847)
T 1s5j_A 191 KRVAIDIEVYTPVKGRIPDSQKAEFPIISIALA--GSDGLK--KVLVL-NR--NDVN-E-GSVKLDGIS---VERF-NTE 257 (847)
T ss_dssp CEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEE--ETTSCE--EEEEE-CS--SCCC-C-CCEEETTEE---EEEE-SSH
T ss_pred EEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEE--ECCCCE--EEEEE-EC--CCCC-C-CCCCCCCCE---EEEE-CCH
T ss_conf 499999887888889998943477428999999--568998--99998-16--7777-6-654579958---9998-989
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCC---------CCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 999999999951179659995055789999999998507853213256---------88710015888865556532100
Q gi|254780661|r 76 AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD---------NGNSRWDLLDVMRAIYAFSPDGI 146 (471)
Q Consensus 76 ~e~~~~i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~---------~~~~~~D~l~~~~~~~~~~p~~~ 146 (471)
.+++..+.+++.++ .+++|||+.+||.++|..=.-+.+..+...... .+...+|+...+..- ..
T Consensus 258 keLL~~F~~~i~dp-DII~GyNi~~FDlpYL~~Ra~~lg~~~~~~~~~~~g~~~~~~~~~~~~d~~~~~~~d------~~ 330 (847)
T 1s5j_A 258 YELLGRFFDILLEY-PIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNK------AV 330 (847)
T ss_dssp HHHHHHHHHHHTTC-SEEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSH------HH
T ss_pred HHHHHHHHHHCCCC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEECCCCEEEEEEEEEEEEEEEEEHHH------HH
T ss_conf 99999999742289-979883105665899999999809983204253057323578620688653357598------99
Q ss_pred CCCCCCCCCCCCCHHHHHHH-HCCCCCC-------------CCHHHHHHHHHHHHHHH
Q ss_conf 24444454433108989987-1887643-------------10133318999999999
Q gi|254780661|r 147 QWPSRDDGATSFKLQDLALA-NGIEHVN-------------AHDAKADVYATLALVWL 190 (471)
Q Consensus 147 ~~~~~~~~~~~~kL~~la~~-n~i~~~~-------------aH~A~~D~~~t~~l~k~ 190 (471)
..-.....-+||+|+.+|+. .|..-.+ +.-.+.||..+..|..+
T Consensus 331 ~~~~~~~~l~sy~L~~Va~~~Lg~~K~~~~~~~~~~d~~~l~~Y~~~D~~l~~~L~~~ 388 (847)
T 1s5j_A 331 RNYAFEGKYNEYNLDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQLTTF 388 (847)
T ss_dssp HHHTSTTCCSSCSHHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9987641302077999999983888422222020100688988875556888899987
No 29
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase/RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=97.32 E-value=0.008 Score=35.49 Aligned_cols=73 Identities=21% Similarity=0.220 Sum_probs=40.2
Q ss_pred CCEEEEECCCCCCCCC---------CC----------------EEEEEEEEEE--CCC-CEECCEEEEEEECCCCC----
Q ss_conf 8379997527889877---------26----------------0489999998--389-72804002266217888----
Q gi|254780661|r 3 NHFVIYDYETFGRDVA---------LD----------------RPAQFAGVRV--DRQ-WEKIESTEVFFCKPADD---- 50 (471)
Q Consensus 3 ~~~v~~D~ETtG~~~~---------~~----------------~iiq~~~i~~--d~~-~~~~~~~~~~~~~~~~~---- 50 (471)
-.||-+|+|-||+... +| .|||+|.-+. |.. ..-.-+..++++-|.+.
T Consensus 22 a~FiAiD~EfsGl~~~~~~~~~~~~~ds~eerY~~~~~~a~~~~iiQ~Gl~~f~~~~~~~~~~~~~fNf~lfp~~~~~~~ 101 (430)
T 2a1r_A 22 ADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRSS 101 (430)
T ss_dssp CSEEEEEEEESCSCSSSCC-----CCCCHHHHHHHHHHHTTTBCEEEEEEEEEEEETTTTEEEEEEEEEEBCCCCSSSSS
T ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCEEEEEEEEEECCCCCCCCC
T ss_conf 99899931146877778765556667999999999998775277017999857776888861366667884451003567
Q ss_pred ----CCCCHHH---HHHHCCCHHHHHHCCCCH
Q ss_conf ----7785789---898579988996079997
Q gi|254780661|r 51 ----YLPDPEA---VFITGITPQKALRDGVVE 75 (471)
Q Consensus 51 ----~~p~p~a---~~v~git~~~~~~~~~~~ 75 (471)
...++.+ |.-||..=......|++.
T Consensus 102 ~~~~f~~~~~sl~FL~~~gfDFnk~~~~GI~y 133 (430)
T 2a1r_A 102 PDVKFVCQSSSIDFLASQGFDFNKVFRNGIPY 133 (430)
T ss_dssp CCCEEEEEHHHHHHHHHTTCCHHHHHTTCBCB
T ss_pred CCHHHEECHHHHHHHHHCCCCHHHHHHCCCCC
T ss_conf 44310325778999998598967898759853
No 30
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=97.20 E-value=0.011 Score=34.64 Aligned_cols=133 Identities=15% Similarity=0.039 Sum_probs=80.9
Q ss_pred CCCEEEEECCCCCCCCCCCEE--EEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHH
Q ss_conf 883799975278898772604--899999983897280400226621788877857898985799889960799979999
Q gi|254780661|r 2 TNHFVIYDYETFGRDVALDRP--AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79 (471)
Q Consensus 2 ~~~~v~~D~ETtG~~~~~~~i--iq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~ 79 (471)
....|.+|+||+|.++.++++ ||+| +.+. . +.+ +|-+ +. . +
T Consensus 21 ~~~~ia~DtE~~~~~ty~~~l~LiQi~----~~~~-----~--~li--------D~l~-----~~-------~------~ 63 (375)
T 1yt3_A 21 AFPAIALDTEFVRTRTYYPQLGLIQLF----DGEH-----L--ALI--------DPLG-----IT-------D------W 63 (375)
T ss_dssp TSSEEEEEEEEECCSCSSCEEEEEEEE----CSSC-----E--EEE--------CGGG-----CS-------C------C
T ss_pred CCCEEEEECCCCCCCCCCCEEEEEEEE----ECCE-----E--EEE--------ECCC-----CC-------C------H
T ss_conf 799089979848988888878999987----6892-----7--999--------6589-----87-------7------8
Q ss_pred HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999951179659995055789999999998507853213256887100158888655565321002444445443310
Q gi|254780661|r 80 RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159 (471)
Q Consensus 80 ~~i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~k 159 (471)
..+.+.|.+++.+.|||| ..||..+|++.+ +.. ....+|+.-..+.+ . ...+++
T Consensus 64 ~~L~~ll~~~~i~kv~h~-~~~D~~~L~~~~---~~~--------~~~~fDt~ia~~~~---~-----------~~~~~~ 117 (375)
T 1yt3_A 64 SPLKAILRDPSITKFLHA-GSEDLEVFLNVF---GEL--------PQPLIDTQILAAFC---G-----------RPMSWG 117 (375)
T ss_dssp HHHHHHHHCTTSEEEESS-CHHHHHHHHHHH---SSC--------CSSEEEHHHHHHHT---T-----------CCTTCC
T ss_pred HHHHHHHHCCCCEEEEEC-HHHHHHHHHHHC---CCC--------CCCEEECHHHHHHH---C-----------CCCHHH
T ss_conf 999999819886199725-586799999964---988--------88716638889883---8-----------750678
Q ss_pred HHHHHHH-HCCCCCC----------------CCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8989987-1887643----------------101333189999999999864226
Q gi|254780661|r 160 LQDLALA-NGIEHVN----------------AHDAKADVYATLALVWLIREKKPK 197 (471)
Q Consensus 160 L~~la~~-n~i~~~~----------------aH~A~~D~~~t~~l~k~i~~~~p~ 197 (471)
|..+++. .|+..+. -+=|..||..+..|...+..+...
T Consensus 118 l~~l~~~~l~~~l~K~~~~sdW~~rPLs~~ql~YAa~Dv~~l~~l~~~l~~~L~~ 172 (375)
T 1yt3_A 118 FASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEA 172 (375)
T ss_dssp HHHHHHHHHCCCCCCTTTTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHCCCEEHHHHHHHHHHHHHH
T ss_conf 8899999864503305545222566687899999840732379999999987763
No 31
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=96.13 E-value=0.062 Score=29.79 Aligned_cols=133 Identities=16% Similarity=0.133 Sum_probs=79.3
Q ss_pred CCCEEEEECCCCCCCCCCCEE--EEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHH
Q ss_conf 883799975278898772604--899999983897280400226621788877857898985799889960799979999
Q gi|254780661|r 2 TNHFVIYDYETFGRDVALDRP--AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79 (471)
Q Consensus 2 ~~~~v~~D~ETtG~~~~~~~i--iq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~ 79 (471)
....+.+|+||++.+..++++ ||++ + .+. .+.+ ++-++ ... +
T Consensus 105 ~~~~iavDtE~~~~~t~~~~l~LiQi~---t-~~~-------~~li--------D~l~l-----------~~~------l 148 (410)
T 2hbj_A 105 NTKEIAVDLEHHDYRSYYGIVCLMQIS---T-RER-------DYLV--------DTLKL-----------REN------L 148 (410)
T ss_dssp TCSEEEEEEEEECSSSSSCEEEEEEEE---C-SSC-------EEEE--------ETTTT-----------TTT------G
T ss_pred CCCEEEEEEEECCCCCCCCCEEEEEEE---E-CCC-------CEEE--------EECCC-----------CCC------H
T ss_conf 599199970477885167706899998---1-897-------7898--------50145-----------335------8
Q ss_pred HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999951179659995055789999999998507853213256887100158888655565321002444445443310
Q gi|254780661|r 80 RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159 (471)
Q Consensus 80 ~~i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~k 159 (471)
..+.+.|.++..+-|+|| ..+|..+|++.|-. .....+|+.-.++.+ |.+.++
T Consensus 149 ~~L~~ll~d~~I~KV~H~-~~~Dl~~L~~~~g~-----------~~~~~fDT~ia~~~l---------------~~~~~s 201 (410)
T 2hbj_A 149 HILNEVFTNPSIVKVFHG-AFMDIIWLQRDLGL-----------YVVGLFDTYHASKAI---------------GLPRHS 201 (410)
T ss_dssp GGGHHHHTCTTSEEEESS-CHHHHHHHHHHHCC-----------CCSSEEEHHHHHHHH---------------TCSCCS
T ss_pred HHHHHHHCCCCCEEEEEC-HHHHHHHHHHHCCC-----------CCCCCCCHHHHHHHC---------------CCCCCC
T ss_conf 999999749994299955-78779999984575-----------678720269999980---------------988756
Q ss_pred HHHHHHH-HCCCCCC----------------CCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8989987-1887643----------------101333189999999999864226
Q gi|254780661|r 160 LQDLALA-NGIEHVN----------------AHDAKADVYATLALVWLIREKKPK 197 (471)
Q Consensus 160 L~~la~~-n~i~~~~----------------aH~A~~D~~~t~~l~k~i~~~~p~ 197 (471)
|..|+.. .|+..+. -+=|..||..++.|...+..+..+
T Consensus 202 L~~L~~~~l~~~l~K~~q~sDW~~RPL~~~qi~YAa~Dv~~Ll~ly~~L~~~L~~ 256 (410)
T 2hbj_A 202 LAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIE 256 (410)
T ss_dssp HHHHHHHHSCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999998736665641334200455587999999985378899999999999997
No 32
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, cytoplasm, exonuclease, hydrolase, magnesium, metal-binding, nonsense- mediated mRNA decay; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=95.74 E-value=0.043 Score=30.79 Aligned_cols=96 Identities=17% Similarity=0.105 Sum_probs=59.6
Q ss_pred HHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC------CCCCCCC
Q ss_conf 5117965999505578999999999850785321325688710015888865556532100244444------5443310
Q gi|254780661|r 86 FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRD------DGATSFK 159 (471)
Q Consensus 86 ~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~------~~~~~~k 159 (471)
+...+..+||||. -+|..++-+.|+.- ||. +.-...+.+..+.|..+.+=.-. ...++-.
T Consensus 272 l~~~kkpiVgHN~-~~Dl~~l~~~F~gp-LP~------------~~~eFk~~v~~lFP~i~DTK~la~~~~~~~~~~~t~ 337 (507)
T 3d45_A 272 IANSGKLVVGHNM-LLDVMHTIHQFYCP-LPA------------DLNEFKEMAICVFPRLLDTKLMASTQPFKDIINNTS 337 (507)
T ss_dssp HHHHCCEEEESSC-HHHHHHHHHHHTCS-CCS------------SHHHHHHHHHHHCSCEEEHHHHTTSTTHHHHCCCCC
T ss_pred HHHCCCEEEEECC-HHHHHHHHHHHCCC-CCC------------CHHHHHHHHHHHCCCCEEHHHHHHCCCCCCCCCCCC
T ss_conf 9725983999243-88899999984288-996------------799999999997775058887763167444677876
Q ss_pred HHHHHHHHCCC-------------------CCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89899871887-------------------6431013331899999999998642
Q gi|254780661|r 160 LQDLALANGIE-------------------HVNAHDAKADVYATLALVWLIREKK 195 (471)
Q Consensus 160 L~~la~~n~i~-------------------~~~aH~A~~D~~~t~~l~k~i~~~~ 195 (471)
|+.++...+.. .+.+|.|-.|+..|..|+-.+....
T Consensus 338 L~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~HeAGyDA~mTg~vF~~l~~~l 392 (507)
T 3d45_A 338 LAELEKRLKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYL 392 (507)
T ss_dssp HHHHHHHTTSTTCCCCCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999832578998342265666555678887353888999999999999997
No 33
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=94.84 E-value=0.083 Score=28.97 Aligned_cols=152 Identities=13% Similarity=0.080 Sum_probs=74.6
Q ss_pred CCCCEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHH
Q ss_conf 98837999752788987726048999999838972804002266217888778578989857998899607999799999
Q gi|254780661|r 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSR 80 (471)
Q Consensus 1 m~~~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~ 80 (471)
|+.+..++|+||+ .+....++--+|.... ++. ..+.. . . . +.
T Consensus 4 ~~~~~~~~D~Et~-~~~~~~~~~~~~~~~~---~~~-~~~~~--~---~------------------------~----l~ 45 (575)
T 2py5_A 4 MPRKMYSCAFETT-TKVEDCRVWAYGYMNI---EDH-SEYKI--G---N------------------------S----LD 45 (575)
T ss_dssp -CCCEEEEEEEEC-CBTTBCCEEEEEEEES---SCT-TCEEE--E---S------------------------C----HH
T ss_pred CCCEEEEEEEEEC-CCCCCCEEEEEEEEEC---CCC-EEEEH--H---H------------------------H----HH
T ss_conf 7651799999706-8977731479999717---984-07770--8---9------------------------9----99
Q ss_pred HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH----HH---HHHCCCCCCC-
Q ss_conf 999995117965999505578999999999850785321325688710015888865556----53---2100244444-
Q gi|254780661|r 81 RIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYA----FS---PDGIQWPSRD- 152 (471)
Q Consensus 81 ~i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~----~~---p~~~~~~~~~- 152 (471)
++.+.+....+.+++|| ++||..|+...+.++..+..... ..+.+--.......... .. ...+.+...+
T Consensus 46 ~f~~~i~~~dpdi~~hN-l~FD~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~DS 122 (575)
T 2py5_A 46 EFMAWVLKVQADLYFHN-LKFAGAFIINWLERNGFKWSADG--LPNTYNTIISRMGQWYMIDICLGYKGKRKIHTVIYDS 122 (575)
T ss_dssp HHHHHHHHHCCEEEETT-HHHHHHHHHHHHHHTTCEECTTC--CTTEEEEEEBTTCCEEEEEEEEEEETTEEEEEEEEEH
T ss_pred HHHHHHHHCCCCEEEEC-CCCCHHHHHHHHHHCCCCCEECC--CCCCCCCEEEECCEEEEEEEEEEECCEEEEEEEEEEC
T ss_conf 99999986599799988-75799999999997098620324--6766652267354579998999603301368999842
Q ss_pred CCCCCCCHHHHHHHHCCCCCC---CCH----------------HHHHHHHHHHHHHHHHH
Q ss_conf 544331089899871887643---101----------------33318999999999986
Q gi|254780661|r 153 DGATSFKLQDLALANGIEHVN---AHD----------------AKADVYATLALVWLIRE 193 (471)
Q Consensus 153 ~~~~~~kL~~la~~n~i~~~~---aH~----------------A~~D~~~t~~l~k~i~~ 193 (471)
-.-.+++|+.+|..++..... .|. ...||..+.+++.....
T Consensus 123 ~~l~~~SL~~va~~f~l~~~K~~~~~~~~~~~~~~~~~~~~~Y~~~Dv~ll~~i~~~~~~ 182 (575)
T 2py5_A 123 LKKLPFPVKKIAKDFKLTVLKGDIDYHKERPVGYKITPEEYAYIKNDIQIIAEALLIQFK 182 (575)
T ss_dssp HHHSCSCHHHHHHHTTCCCCSSCCCTTSCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 144844799999873745455647744410223323298999999999999999999999
No 34
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=88.81 E-value=0.98 Score=22.07 Aligned_cols=88 Identities=19% Similarity=0.129 Sum_probs=51.3
Q ss_pred HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf 99999511796599950557899999999985078532132568871001588886555653210024444454433108
Q gi|254780661|r 81 RIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160 (471)
Q Consensus 81 ~i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL 160 (471)
.+..++.++..+.+||| +.+|...|.+.|-- ..+..+|+..+++.. ..+..+..|
T Consensus 87 ~L~~lL~~~~i~Kvg~~-~~~D~~~L~~~~~~-----------~~~~~~d~~~~~~~~-------------~~~~~~~~l 141 (208)
T 2e6m_A 87 GLKMLLENKSIKKAGVG-IEGDQWKLLRDFDV-----------KLESFVELTDVANEK-------------LKCAETWSL 141 (208)
T ss_dssp HHHHHHTCTTSEEEESS-HHHHHHHHHHHHCC-----------CCCSEEEHHHHHHHH-------------TTCCCCCCH
T ss_pred HHHHHHCCCCCCCHHHH-HHHHHHHHHHCCCC-----------CCCCCCCCHHHHHHH-------------HCCCCCCCH
T ss_conf 99999769982303433-75189998430223-----------457312153899998-------------158765359
Q ss_pred HHHHHH-HCCCC----------------C--CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 989987-18876----------------4--310133318999999999986
Q gi|254780661|r 161 QDLALA-NGIEH----------------V--NAHDAKADVYATLALVWLIRE 193 (471)
Q Consensus 161 ~~la~~-n~i~~----------------~--~aH~A~~D~~~t~~l~k~i~~ 193 (471)
..++.. .|... . .-+=|..||.++..|...+..
T Consensus 142 ~~l~~~~l~~~~~k~k~~q~s~W~~rpLt~~qi~YAA~Da~~~~~l~~~L~~ 193 (208)
T 2e6m_A 142 NGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGN 193 (208)
T ss_dssp HHHHHHHHSCBCCCCHHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999998293214207553477765889999999999999999999999986
No 35
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function, ribonuclease D, exonuclease; 2.10A {Bifidobacterium adolescentis ATCC15703}
Probab=86.56 E-value=1.3 Score=21.22 Aligned_cols=132 Identities=17% Similarity=0.081 Sum_probs=74.5
Q ss_pred CEEEEECCCCCCCCCCCE--EEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHH
Q ss_conf 379997527889877260--489999998389728040022662178887785789898579988996079997999999
Q gi|254780661|r 4 HFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRR 81 (471)
Q Consensus 4 ~~v~~D~ETtG~~~~~~~--iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~ 81 (471)
..|-+|+||++....+++ .||++ ++..+ ++ +++|.+..-.+ +. ...
T Consensus 39 ~~iavDtE~~~~~~y~~~~~LvQi~---~~g~~-------~~--------liDp~~~~~~~-----------~~---~~~ 86 (440)
T 3cym_A 39 GSLAADAERASGFRYGHEDWLVQFK---RDGAG-------IG--------LLDPQALAAAG-----------AD---WND 86 (440)
T ss_dssp EEEEEEEEECTTTSSSCCEEEEEEE---EETTE-------EE--------EECHHHHHHTT-----------CC---HHH
T ss_pred CCEEEECCCCCCCCCCCEEEEEEEE---ECCCC-------EE--------EEECCCCCCCC-----------CH---HHH
T ss_conf 9189979867888068747899986---78988-------79--------98055556555-----------31---799
Q ss_pred HHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 99995117965999505578999999999850785321325688710015888865556532100244444544331089
Q gi|254780661|r 82 IHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161 (471)
Q Consensus 82 i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~ 161 (471)
+.+.+. +...|+|| ..||.++|+. | +..| ..-+|+.-.++.+ |..+++|.
T Consensus 87 L~~~l~--~i~kv~H~-~~~Dl~~l~~-~---g~~~--------~~~fDTqiAa~~l---------------g~~~~gl~ 136 (440)
T 3cym_A 87 FNRAVG--DAVWILHD-SLQDLPGFDE-L---GMEP--------QRLFDTEIAARLL---------------GLKRFGLA 136 (440)
T ss_dssp HHHHHT--TCEEEESS-HHHHHHHHHH-H---TCCC--------CEEEEHHHHHHHT---------------TCSSCSHH
T ss_pred HHHHHC--CCEEEEEC-CHHHHHHHHH-C---CCCC--------CCCHHHHHHHHHC---------------CCCCCCHH
T ss_conf 999867--98199977-4789999998-7---8812--------8812299999872---------------88877799
Q ss_pred HHHHH-HCCCCCCC----------------CHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89987-18876431----------------01333189999999999864226
Q gi|254780661|r 162 DLALA-NGIEHVNA----------------HDAKADVYATLALVWLIREKKPK 197 (471)
Q Consensus 162 ~la~~-n~i~~~~a----------------H~A~~D~~~t~~l~k~i~~~~p~ 197 (471)
.|++. .|+..+.. .=|..||..+..|...+..+..+
T Consensus 137 ~l~~~~lg~~l~K~~~~sdW~~rPLs~~q~~YAa~Dv~~L~~l~~~l~~~L~~ 189 (440)
T 3cym_A 137 AVTEHFLGLTLAKEHSAADWSYRPLPRDWRNYAALDVELLIELETKMRAELKR 189 (440)
T ss_dssp HHHHHHHCEECCCCCTTCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999947665638888761787788899999986067789999999999987
No 36
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, structural genomics, protein structure initiative, center for eukaryotic structural genomics; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=79.59 E-value=2.5 Score=19.44 Aligned_cols=91 Identities=10% Similarity=0.011 Sum_probs=54.0
Q ss_pred HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999951179659995055789999999998507853213256887100158888655565321002444445443310
Q gi|254780661|r 80 RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159 (471)
Q Consensus 80 ~~i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~k 159 (471)
+.+.++|.++..+.||++ +..|...|++.|- + .-++.+|+-.++..... .| +.....
T Consensus 98 ~~L~~~L~~~~i~KVG~~-i~~D~~~L~~~~g---i--------~~~~~vDl~~~a~~~~~-~~----------~~~~~~ 154 (206)
T 1vk0_A 98 KDLYRFFASKFVTFVGVQ-IEEDLDLLRENHG---L--------VIRNAINVGKLAAEARG-TL----------VLEFLG 154 (206)
T ss_dssp HHHHHHHTCSSSEEEESS-CHHHHHHHHHHHC---C--------CCSSEEEHHHHHHHHHT-CG----------GGGGCC
T ss_pred HHHHHHHCCCCEEEEEEC-HHHHHHHHHHHCC---C--------CCCCEEECHHHHHHHHC-CC----------CCCCCC
T ss_conf 999999659981599962-6988999851249---7--------65535525699998732-54----------413100
Q ss_pred HHHHHHHH-CCCC----------------CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 89899871-8876----------------4310133318999999999986
Q gi|254780661|r 160 LQDLALAN-GIEH----------------VNAHDAKADVYATLALVWLIRE 193 (471)
Q Consensus 160 L~~la~~n-~i~~----------------~~aH~A~~D~~~t~~l~k~i~~ 193 (471)
|..|+... |... +.-+=|..||.++..|.+.+.+
T Consensus 155 l~~L~~~~lg~~l~K~~~~~s~W~~pLs~~Qi~YAA~DA~~~~~iy~~L~~ 205 (206)
T 1vk0_A 155 TRELAHRVLWSDLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999976986786765214876889999999999989999999999852
No 37
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=75.87 E-value=3.2 Score=18.76 Aligned_cols=50 Identities=20% Similarity=0.320 Sum_probs=29.2
Q ss_pred CCEEEEEECCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCHHCCCCH
Q ss_conf 760799701010477875068863028887744787103568720007998
Q gi|254780661|r 220 MTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDS 270 (471)
Q Consensus 220 ~~~~~~v~~~~~~~~~~~~~v~~~~~~p~~~n~~i~fDL~~Dp~~~l~l~~ 270 (471)
-.|..|+.+. ++..-+.+.+..++.|-.+..-++||||..|.-.+-++..
T Consensus 360 QqP~ih~y~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (526)
T 3iyk_A 360 QQPQIHVYSA-PWDSDDVFFFHCISHHHANESFFLGFDLSIDLVHYEDLTA 409 (526)
T ss_pred CCCCCEEECC-CCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEEECCC
T ss_conf 4998441068-8787727899852576688615887611311245334465
No 38
>3m8r_A DNA polymerase I, thermostable; DNA polymerase, DNA replication, nucleotides, modified nucleotide, artificial nucleotide; HET: DNA DOC HXZ 15P; 2.00A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 1ktq_A* 5ktq_A* 4ktq_A* 1qtm_A* 2ktq_A* 1qss_A* 1qsy_A*
Probab=24.22 E-value=26 Score=12.97 Aligned_cols=78 Identities=13% Similarity=-0.054 Sum_probs=51.1
Q ss_pred EEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 99505578999999999850785321325688710015888865556532100244444544331089899871887643
Q gi|254780661|r 94 IGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 (471)
Q Consensus 94 ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~~la~~n~i~~~~ 173 (471)
+++| ..||..++.. ++++..- ..+|++-.++ ++.|+ +++|+.+++...-..
T Consensus 56 ~~~~-~~~d~~~l~~---~~Gi~~~--------~~~Dtmlaa~---ll~~~------------~~~l~~la~~~l~~~-- 106 (540)
T 3m8r_A 56 ARGL-LAKDLSVLAL---REGLGLP--------PGDDPMLLAY---LLDPS------------NTTPEGVARRYGGEW-- 106 (540)
T ss_dssp BCST-THHHHHHHHH---HTTCCCC--------BCCCHHHHHH---HHCTT------------CCCHHHHHHHHTCCC--
T ss_pred HHHH-HHHHHHHHHH---HCCCCCC--------CCCHHHHHHH---HHCCC------------CCCHHHHHHHHCCCC--
T ss_conf 7756-8887999999---6799889--------9771899999---83998------------998699999977521--
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH---HHHHH
Q ss_conf 1013331899999999998642---26899
Q gi|254780661|r 174 AHDAKADVYATLALVWLIREKK---PKLFE 200 (471)
Q Consensus 174 aH~A~~D~~~t~~l~k~i~~~~---p~~~~ 200 (471)
.--|..||.+|..|...+..+. +.++.
T Consensus 107 ~~YA~~Da~~t~~L~~~l~~~L~~~~~l~~ 136 (540)
T 3m8r_A 107 TEEAGERAALSERLFANLWGRLEGEERLLW 136 (540)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 588999999999999999999860255899
No 39
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, structural genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Probab=23.02 E-value=27 Score=12.82 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=26.4
Q ss_pred CCCCEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCH
Q ss_conf 9883799975278898772604899999983897280400226621788877857
Q gi|254780661|r 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55 (471)
Q Consensus 1 m~~~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p 55 (471)
|.+-++-+|+=||+.. ++++|.+++++.+... +.+...|+|
T Consensus 4 M~kyvlgIDiGTss~K----------a~l~d~~g~i~~~~~~----~~~~~~~~~ 44 (501)
T 3g25_A 4 MEKYILSIDQGTTSSR----------AILFNQKGEIAGVAQR----EFKQYFPQS 44 (501)
T ss_dssp CCCEEEEEEECSSEEE----------EEEECTTSCEEEEEEE----ECCCBCSST
T ss_pred CCCEEEEEECCCCCEE----------EEEECCCCCEEEEEEE----CCCCCCCCC
T ss_conf 2727999983110310----------0078599989999997----277135899
Done!