RPSBLAST alignment of GI: 254780661 and protein with PDBid: 2ioc
>2ioc_B Three prime repair exonuclease 1; proline helix, nucleotide complex, DNAQ family, hydrolase; HET: D5M; 2.10A {Mus musculus} SCOP: c.55.3.5 PDB: 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A Length = 242
Score = 85.0 bits (209), Expect = 3e-17
Identities = 36/244 (14%), Positives = 71/244 (29%), Gaps = 37/244 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP----------- 53
+ D E G + + + V R+ + S P
Sbjct: 14 LIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAP 73
Query: 54 ----DPEAVFITGITPQKALRDGVVEAEFS----RRIHQFFSVPNTCIIGYNNIRFDDYY 105
P A ITG++ + G + + R C++ +N R+D
Sbjct: 74 GKACSPGASEITGLSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPL 133
Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA- 164
+ R S D + ++A+ PS + S+ L +
Sbjct: 134 LQTELARLSTPSPLDGTFC----VDSIAALKALEQA-----SSPSGNGSRKSYSLGSIYT 184
Query: 165 LANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV 224
++H A+ DV L++ + K L +++ R ++ M
Sbjct: 185 RLYWQAPTDSHTAEGDVLTLLSIC---QWKPQALLQWV-----DEHARPFSTVKPMYGTP 236
Query: 225 HVSG 228
+G
Sbjct: 237 ATTG 240