HHsearch alignment for GI: 254780662 and conserved domain: PRK05007
>PRK05007 PII uridylyl-transferase; Provisional.
Probab=91.96 E-value=0.91 Score=24.01 Aligned_cols=90 Identities=9% Similarity=-0.092 Sum_probs=53.5
Q ss_pred HHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHCCC-CCCCEEEEECCCCCCCCCCCCEEEEEEECCCCCHHHHH--
Q ss_conf 889998863199789744998999999999999984058-98871787247655589988657999947877438999--
Q gi|254780662|r 27 SFSASAMFGEASIDDLEKYTPQMLALTSVVSYDIFAGWD-HSSACCIDIREVEGINPSGISISIITVIVDNIPFLYQS-- 103 (1576)
Q Consensus 27 ~~fa~~~f~~~~~eDl~~~~~~~l~~~~~~~~~~~~~r~-~~~~~~~v~~p~~~~~gw~s~~tvi~iv~dD~PfLvDS-- 103 (1576)
T Consensus 36 ~~l~~~f~~~~~~~~l~~~r~~~~D~ll~~lw~~~~~~~~~~iaLvAVGGYGRgEL~P~SDIDlLiL~~~~~~~~~~~~i 115 (881)
T PRK05007 36 QWLGDAFDAGISAEQLVEARTEFIDQLLQRLWIEAGFDQIADIALVAVGGYGRGELHPLSDIDLLILSRKKLPDEQAQKV 115 (881)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHH
T ss_conf 99999997699999999999999999999999975888888979997278641347886706478862899986899999
Q ss_pred --HHHHHHHCCCCEE
Q ss_conf --9999997799127
Q gi|254780662|r 104 --IIGEIVARCRNLT 116 (1576)
Q Consensus 104 --v~~~l~~~~~~i~ 116 (1576)
T Consensus 116 ~~fl~~LWD~gl~vG 130 (881)
T PRK05007 116 GELITLLWDLKLEVG 130 (881)
T ss_pred HHHHHHHHCCCCCCC
T ss_conf 999999870899878