HHsearch alignment for GI: 254780662 and conserved domain: cd05211
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=99.25 E-value=3.7e-10 Score=107.36 Aligned_cols=185 Identities=24% Similarity=0.220 Sum_probs=131.4
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHH--HCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHH
Q ss_conf 467899999999998089965486459960588633244311--127662089997394368677788137989999999
Q gi|254780662|r 928 TARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGM--LLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLF 1005 (1576)
Q Consensus 928 TarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgm--Lls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf 1005 (1576)
T Consensus 2 TG~Gv~~~~~~a~~~~~~~l~g~~vaVqGfG----nVG~~~a~~l~~~GakvvavsD~~G~i~~~~---g~~~~~~~~~~ 74 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEGLTVAVQGLG----NVGWGLAKKLAEEGGKVLAVSDPDGYIYDPG---ITTEELINYAV 74 (217)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCEEEEECCC----HHHHHHHHHHHHCCCEEEEEECCCCEEECCC---CCCHHHHHHHH
T ss_conf 5137999999999976968579999998988----9999999999985998999985787177899---98699999999
Q ss_pred HCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCEECCCCCCCC
Q ss_conf 66898700389787178970898214442179899987098855428889998630365304433874211126898620
Q gi|254780662|r 1006 DSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRAPRENNA 1085 (1576)
Q Consensus 1006 ~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYvka~~e~~~ 1085 (1576)
T Consensus 75 ~~~-~~~~-~~------------------------------~~~~~~~~~----~~~~~~DIl--------iPaAl~~~I 110 (217)
T cd05211 75 ALG-GSAR-VK------------------------------VQDYFPGEA----ILGLDVDIF--------APCALGNVI 110 (217)
T ss_pred HHC-CCCC-CC------------------------------CCCCCCCCC----CCCCCCCEE--------EECCCCCCC
T ss_conf 818-9653-66------------------------------653059865----003677689--------642445887
Q ss_pred CCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCH
Q ss_conf 01521000000258830468998555103076789999973986835331344373244047679998658877079898
Q gi|254780662|r 1086 DIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEVNIKIALASAMRDGRLTL 1165 (1576)
Q Consensus 1086 ~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~EVniKIll~~~~~~g~lt~ 1165 (1576)
T Consensus 111 ~-~--------~~a~~i~ak~I~EgAN~P~t~ea~~iL~~rgI~viPD~laNaGGVivSy~Ew------~Qn~~~~~W~~ 175 (217)
T cd05211 111 D-L--------ENAKKLKAKVVAEGANNPTTDEALRILHERGIVVAPDIVANAGGVIVSYFEW------VQNLQRLSWDA 175 (217)
T ss_pred C-H--------HHHHHHCCEEEECCCCCCCCHHHHHHHHHCCCEEECHHHHCCCCEEEEHHHH------HHHCCCCCCCH
T ss_conf 9-8--------9998717728950678998978999999789989476884686722229999------74046689999
Q ss_pred HHHHHHHHH-HHHH
Q ss_conf 899889998-7899
Q gi|254780662|r 1166 ENRNKLLSS-MTSE 1178 (1576)
Q Consensus 1166 ~~Rn~lL~~-mtde 1178 (1576)
T Consensus 176 eeV~~kL~~~m~~~ 189 (217)
T cd05211 176 EEVRSKLEQVMTDI 189 (217)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999