HHsearch alignment for GI: 254780662 and conserved domain: cd05313

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=99.37  E-value=2.6e-10  Score=108.67  Aligned_cols=210  Identities=20%  Similarity=0.245  Sum_probs=141.0

Q ss_pred             CCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCH--HHCCCCCEEEEEECCCEE
Q ss_conf             501105699998843101146789999999999808996548645996058863324431--112766208999739436
Q gi|254780662|r  909 DDAFASGGSMGYDHKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNG--MLLSRKIQLVAAFDHSDI  986 (1576)
Q Consensus       909 gdAFaSGgs~GydHK~mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNg--mLls~~i~lvaafdh~hi  986 (1576)
T Consensus         2 GKp~~~GGs~gR~e----ATG~Gv~~~~~~~~~~~~~~l~g~~vaIQGfGn----VG~~aA~~l~e~GakvVaVsD~~G~   73 (254)
T cd05313           2 GKGLSWGGSLIRPE----ATGYGLVYFVEEMLKDRNETLKGKRVAISGSGN----VAQYAAEKLLELGAKVVTLSDSKGY   73 (254)
T ss_pred             CCCCCCCCCCCCCC----EEHHHHHHHHHHHHHHCCCCCCCCEEEEECCCH----HHHHHHHHHHHCCCEEEEEECCCCE
T ss_conf             99833377868775----010889999999999679695899999989779----9999999999779979999857850


Q ss_pred             EECCCCCCCCCHHHHHHHHHCC---CCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCC
Q ss_conf             8677788137989999999668---9870038978717897089821444217989998709885542888999863036
Q gi|254780662|r  987 FIDPDPNSETTFDERKRLFDSP---SSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMA 1063 (1576)
Q Consensus       987 f~DP~PD~~~s~~Er~RLf~lp---rssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a 1063 (1576)
T Consensus        74 i~~~~---Gld~~~l~~l~~~k~~~~~~~~~~~~~~---~-----------------------~~~~~~~~~----~~~~  120 (254)
T cd05313          74 VYDPD---GFTGEKLAELKEIKEVRRGRVSEYAKKY---G-----------------------TAKYFEGKK----PWEV  120 (254)
T ss_pred             EECCC---CCCHHHHHHHHHHHHHCCCCCHHHHHCC---C-----------------------CCEECCCCC----HHHC
T ss_conf             88799---9988999999999974687102444138---9-----------------------856638975----1330


Q ss_pred             CCEEECCCCCCCEECCCCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCC
Q ss_conf             53044338742111268986200152100000025883046899855510307678999997398683533134437324
Q gi|254780662|r 1064 SVDLLWFGGIGTYIRAPRENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNC 1143 (1576)
Q Consensus      1064 ~vDLlw~gGiGTYvka~~e~~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~ 1143 (1576)
T Consensus       121 ~cDIl--------iPaA~en-~I~~~nA~~---i~a~--~ck~IvEgANgP~T~eAd~iL~~kGI~viPDilaNAGGV~v  186 (254)
T cd05313         121 PCDIA--------FPCATQN-EVDAEDAKL---LVKN--GCKYVAEGANMPCTAEAIEVFRQAGVLFAPGKAANAGGVAV  186 (254)
T ss_pred             CCCEE--------EECCCCC-CCCHHHHHH---HHHC--CCEEEEECCCCCCCHHHHHHHHHCCCEEECHHHHCCCCCEE
T ss_conf             47699--------7435466-789999999---9967--98299865889998789999998898896805620757011


Q ss_pred             CCHHHHHHHHHHHHHHCCCCCHHHHHHHHH-HHHHHH
Q ss_conf             404767999865887707989889988999-878999
Q gi|254780662|r 1144 SDLEVNIKIALASAMRDGRLTLENRNKLLS-SMTSEV 1179 (1576)
Q Consensus      1144 Sd~EVniKIll~~~~~~g~lt~~~Rn~lL~-~mtdeV 1179 (1576)
T Consensus       187 SyfEw------vQn~~~~~W~~eev~~~L~~~M~~a~  217 (254)
T cd05313         187 SGLEM------SQNSQRLSWTAEEVDAKLKDIMKNIH  217 (254)
T ss_pred             EHHHH------HHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             27487------75146458999999999999999999