Query gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 1576 No_of_seqs 192 out of 453 Neff 4.7 Searched_HMMs 33803 Date Wed Jun 1 15:46:49 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780662.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2tmg_A Protein (glutamate deh 99.5 2.2E-12 6.6E-17 126.5 15.2 166 925-1149 37-205 (267) 2 >1v9l_A Glutamate dehydrogenas 99.1 1.4E-09 4.1E-14 101.6 10.7 208 918-1183 4-211 (219) 3 >2bma_A Glutamate dehydrogenas 98.9 1.4E-08 4.2E-13 92.7 10.3 212 924-1189 4-217 (222) 4 >1bgv_A Glutamate dehydrogenas 98.8 2.4E-08 7.2E-13 90.6 7.3 184 922-1153 2-188 (248) 5 >1gtm_A Glutamate dehydrogenas 98.6 1.3E-06 3.8E-11 75.3 11.9 191 922-1179 2-195 (211) 6 >1leh_A Leucine dehydrogenase; 98.6 5.7E-07 1.7E-11 78.5 9.5 115 760-907 9-133 (137) 7 >1gtm_A Glutamate dehydrogenas 97.4 0.0072 2.1E-07 42.1 12.7 138 775-943 57-200 (208) 8 >1hwx_A GDH, glutamate dehydro 97.4 0.0017 5E-08 47.7 9.0 125 952-1134 4-130 (131) 9 >2bma_A Glutamate dehydrogenas 97.4 0.0074 2.2E-07 42.0 12.2 122 774-924 100-228 (248) 10 >1v9l_A Glutamate dehydrogenas 97.3 0.004 1.2E-07 44.4 10.2 135 774-945 57-198 (202) 11 >1c1d_A L-phenylalanine dehydr 97.2 0.0075 2.2E-07 41.9 11.1 125 757-909 4-138 (144) 12 >1bgv_A Glutamate dehydrogenas 97.0 0.018 5.2E-07 38.7 11.4 116 774-917 77-196 (201) 13 >2tmg_A Protein (glutamate deh 96.9 0.012 3.6E-07 40.0 9.7 116 774-917 24-143 (148) 14 >1vl6_A Malate oxidoreductase; 96.7 0.0061 1.8E-07 42.7 7.0 146 928-1134 4-153 (156) 15 >1hwx_A GDH, glutamate dehydro 95.8 0.032 9.4E-07 36.4 6.4 143 777-946 81-232 (234) 16 >1u8s_A Glycine cleavage syste 87.8 1.5 4.6E-05 21.4 8.6 80 84-175 4-83 (106) 17 >2nyi_A Unknown protein; prote 86.8 1.7 5.1E-05 21.0 7.5 75 85-175 7-82 (111) 18 >3lou_A Formyltetrahydrofolate 85.3 2 5.9E-05 20.4 8.9 76 84-175 7-83 (93) 19 >1u8s_A Glycine cleavage syste 76.3 3.7 0.00011 18.0 8.8 69 85-174 4-72 (86) 20 >1zpv_A ACT domain protein; st 75.9 3.8 0.00011 18.0 9.9 68 85-173 3-71 (91) 21 >1tlt_A Putative oxidoreductas 64.3 6.3 0.00019 16.0 3.7 89 951-1070 7-95 (184) 22 >2p0l_A Lipoate-protein ligase 59.2 7.1 0.00021 15.5 2.5 118 870-991 46-185 (288) 23 >1h6d_A Precursor form of gluc 59.1 2.7 7.9E-05 19.3 0.3 72 949-1027 81-154 (210) 24 >2c8m_A Lipoate-protein ligase 57.2 8 0.00024 15.1 3.0 118 870-993 33-171 (262) 25 >2bnm_A Epoxidase; oxidoreduct 55.2 3.4 1E-04 18.4 0.3 19 1108-1126 46-64 (76) 26 >1w91_A Beta-xylosidase; MAD, 50.3 10 0.00029 14.2 2.7 82 209-295 10-97 (128) 27 >1fiu_A Type II restriction en 49.4 9.7 0.00029 14.3 1.9 63 886-960 33-100 (286) 28 >3ct8_A Protein BH2160, putati 48.1 7.3 0.00022 15.4 1.1 24 204-231 29-52 (79) 29 >2ve8_A FTSK, DNA translocase 47.9 11 0.00032 13.9 3.4 47 1175-1224 11-57 (73) 30 >3id5_A NOP5, PRE mRNA splicin 46.4 2.1 6.1E-05 20.3 -1.9 27 604-630 91-117 (133) 31 >2v6z_M DNA polymerase epsilon 45.5 7.8 0.00023 15.2 0.9 50 320-369 16-65 (99) 32 >2rk0_A Glyoxalase/bleomycin r 45.4 12 0.00034 13.6 3.7 48 916-963 2-53 (69) 33 >3i23_A Oxidoreductase, GFO/ID 45.3 7.7 0.00023 15.2 0.9 66 951-1027 4-69 (125) 34 >1y7p_A Hypothetical protein A 44.8 12 0.00035 13.6 4.4 68 87-169 4-71 (83) 35 >2p5i_A BH3822 protein; PFAM03 43.4 12 0.00037 13.4 1.9 127 870-1006 49-195 (288) 36 >1nvm_B Acetaldehyde dehydroge 43.1 4 0.00012 17.7 -0.8 36 951-993 6-41 (158) 37 >1jqo_A Phosphoenolpyruvate ca 43.0 12 0.00034 13.6 1.5 18 773-790 351-368 (424) 38 >2p5z_X Type VI secretion syst 43.0 12 0.00037 13.3 3.8 55 892-946 13-68 (90) 39 >2pgn_A Cyclohexane-1,2-dione 41.6 13 0.00039 13.2 4.1 96 877-980 23-119 (190) 40 >2v8f_A Profilin-2, profilin I 41.3 12 0.00035 13.6 1.3 58 1010-1074 2-70 (140) 41 >2jz8_A Uncharacterized protei 40.9 6.9 0.0002 15.6 0.1 33 980-1021 33-66 (87) 42 >3iol_B Glucagon; receptor-lig 40.4 14 0.0004 13.0 1.8 13 207-219 17-29 (31) 43 >3f4l_A Putative oxidoreductas 39.5 7.1 0.00021 15.5 -0.0 94 952-1074 5-99 (125) 44 >1r8s_E ARNO; protein transpor 38.3 14 0.00043 12.8 9.0 61 1241-1301 40-108 (116) 45 >2nyi_A Unknown protein; prote 37.9 15 0.00043 12.7 8.7 57 86-160 4-60 (84) 46 >1jhf_A LEXA repressor; LEXA S 37.4 15 0.00044 12.7 6.5 50 635-684 3-53 (72) 47 >3e82_A Putative oxidoreductas 36.0 15 0.00046 12.5 4.8 80 951-1044 9-88 (127) 48 >3dnp_A Stress response protei 33.4 17 0.0005 12.2 4.5 71 890-964 46-116 (175) 49 >1jrj_A Exendin-4; Trp-CAGE, G 32.8 17 0.00051 12.1 2.0 13 207-219 17-29 (39) 50 >2coo_A Lipoamide acyltransfer 32.7 17 0.0005 12.2 1.0 16 934-949 20-35 (70) 51 >2g49_C Glucagon preproprotein 32.6 17 0.00051 12.1 1.7 14 205-218 15-28 (29) 52 >2ko1_A CTR148A, GTP pyrophosp 31.8 18 0.00052 12.0 6.2 64 87-170 5-68 (88) 53 >1jqn_A Pepcase, PEPC, phospho 31.3 17 0.00051 12.1 0.9 17 774-790 348-364 (420) 54 >2olp_A Hemoglobin II; oxygen 30.6 18 0.00055 11.8 3.5 42 634-675 2-43 (152) 55 >1zr6_A Glucooligosaccharide o 30.3 15 0.00045 12.6 0.4 10 976-985 156-165 (168) 56 >2zog_A Cytosolic non-specific 30.2 19 0.00055 11.8 3.9 149 929-1116 45-206 (236) 57 >2bsz_A Arylamine N-acetyltran 29.3 19 0.00057 11.7 1.2 32 71-102 46-77 (113) 58 >1xou_A ESPA; coiled coil, hel 29.3 13 0.00039 13.1 0.0 31 166-196 158-188 (192) 59 >3fhl_A Putative oxidoreductas 29.2 17 0.00052 12.0 0.6 59 951-1024 7-65 (126) 60 >1nha_A TFIIF-alpha, transcrip 28.6 20 0.00059 11.6 2.0 35 656-690 17-51 (82) 61 >3d9w_A Putative acetyltransfe 28.4 11 0.00033 13.8 -0.5 35 69-103 44-78 (157) 62 >2ija_A Arylamine N-acetyltran 28.4 19 0.00055 11.8 0.6 108 27-134 30-166 (295) 63 >1o08_A Beta-phosphoglucomutas 27.9 20 0.0006 11.5 5.6 50 642-693 6-55 (77) 64 >1fx3_A SECB, protein-export p 27.7 20 0.0006 11.5 2.3 42 309-350 83-135 (169) 65 >3ec7_A Putative dehydrogenase 27.4 21 0.00061 11.4 4.0 99 950-1075 24-122 (149) 66 >2hhc_A NODZ, nodulation fucos 27.1 21 0.00062 11.4 1.5 20 771-790 19-38 (181) 67 >2o7s_A DHQ-SDH, bifunctional 26.8 13 0.00039 13.1 -0.4 42 933-974 15-56 (190) 68 >1w85_I Dihydrolipoyllysine-re 26.7 21 0.00062 11.3 1.2 16 934-949 11-26 (49) 69 >2qva_A GM27569P; translin, D. 26.6 21 0.00063 11.3 6.3 34 1488-1521 165-198 (247) 70 >2f60_K Pyruvate dehydrogenase 26.2 21 0.00064 11.3 1.1 16 934-949 14-29 (64) 71 >3h0g_A DNA-directed RNA polym 25.7 15 0.00043 12.7 -0.3 75 974-1061 6-83 (118) 72 >1nvt_A Shikimate 5'-dehydroge 25.6 22 0.00065 11.2 1.4 61 933-1004 2-62 (160) 73 >1ou9_A Stringent starvation p 25.4 22 0.00066 11.1 1.9 15 209-223 13-27 (129) 74 >2r09_A Cytohesin-3; autoinhib 25.1 22 0.00066 11.1 9.0 63 1239-1301 38-108 (132) 75 >2vfm_A Bifunctional tail prot 25.0 14 0.00043 12.8 -0.4 18 980-997 224-241 (382) 76 >3k1t_A Glutamate--cysteine li 24.5 23 0.00068 11.0 0.8 22 932-955 32-53 (103) 77 >1ou8_A Stringent starvation p 24.2 23 0.00069 11.0 1.9 15 209-223 13-27 (111) 78 >2f1f_A Acetolactate synthase 23.8 24 0.0007 10.9 6.5 65 87-171 4-68 (79) 79 >2eq8_C Pyruvate dehydrogenase 23.5 24 0.0007 10.9 1.3 21 934-958 4-24 (40) 80 >2bw2_A Bypass of forespore C; 23.4 24 0.00071 10.8 0.6 42 128-169 11-54 (73) 81 >1xsz_A Guanine nucleotide exc 23.3 24 0.00071 10.8 7.6 61 1241-1301 40-110 (112) 82 >1f2r_I Inhibitor of caspase-a 23.1 24 0.00071 10.8 2.4 57 923-982 30-90 (100) 83 >1zjj_A Hypothetical protein P 23.1 24 0.00072 10.8 2.7 53 901-967 29-87 (131) 84 >2p0a_A Synapsin-3, synapsin I 22.5 23 0.00068 11.0 0.2 14 795-808 101-114 (150) 85 >3fzq_A Putative hydrolase; YP 22.4 25 0.00074 10.7 2.5 55 906-964 59-115 (160) 86 >1ku1_A ARF guanine-nucleotide 22.3 25 0.00074 10.7 6.6 58 1244-1301 104-169 (178) 87 >1ux5_A BNI1 protein; structur 22.3 25 0.00074 10.7 0.5 16 1051-1066 20-35 (118) 88 >2jpc_A SSRB; DNA binding prot 22.3 25 0.00074 10.7 0.6 24 923-946 21-44 (61) 89 >2efj_A 3,7-dimethylxanthine m 22.2 15 0.00044 12.7 -0.8 59 1091-1171 204-262 (384) 90 >1w6k_A Lanosterol synthase; c 22.1 25 0.00074 10.7 2.5 14 675-688 30-43 (136) 91 >2oo4_A Notch 2, neurogenic lo 21.5 26 0.00076 10.6 2.5 62 88-155 77-138 (186) 92 >2qyv_A XAA-His dipeptidase; Y 21.4 26 0.00077 10.5 5.4 171 930-1157 31-209 (215) 93 >1w4i_A Pyruvate dehydrogenase 21.1 26 0.00078 10.5 1.0 14 935-948 10-23 (62) 94 >1qyn_A Protein-export protein 21.0 26 0.00078 10.5 2.0 41 309-349 74-125 (153) 95 >2hwg_A Phosphoenolpyruvate-pr 20.8 25 0.00073 10.7 0.1 66 923-1006 61-126 (136) 96 >1hwx_A GDH, glutamate dehydro 20.7 16 0.00047 12.4 -0.9 12 1137-1148 36-47 (136) 97 >3don_A Shikimate dehydrogenas 20.6 27 0.00079 10.4 2.1 39 933-971 2-40 (151) 98 >3d7i_A Carboxymuconolactone d 20.5 27 0.00079 10.4 4.9 58 1301-1360 6-66 (68) 99 >3bk2_A RNAse J, metal depende 20.5 27 0.00079 10.4 1.0 30 1118-1147 6-35 (97) 100 >3kux_A Putative oxidoreductas 20.4 27 0.0008 10.4 0.7 35 948-982 4-40 (127) 101 >2ho4_A Haloacid dehalogenase- 20.1 27 0.00081 10.3 1.6 87 902-1005 36-135 (140) No 1 >>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} (A:1-32,A:181-415) Probab=99.49 E-value=2.2e-12 Score=126.47 Aligned_cols=166 Identities=24% Similarity=0.262 Sum_probs=135.8 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHH-CC--CCCEEEEEECCCEEEECCCCCCCCCHHHH Q ss_conf 0114678999999999980899654864599605886332443111-27--66208999739436867778813798999 Q gi|254780662|r 925 MGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGML-LS--RKIQLVAAFDHSDIFIDPDPNSETTFDER 1001 (1576) Q Consensus 925 mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgmL-ls--~~i~lvaafdh~hif~DP~PD~~~s~~Er 1001 (1576) -..|+.|+..+++.-++.+|.|+....|.+.|.| +|.+|-.. |. ...|+|++.|+.+..+||+ |.+..|. T Consensus 37 ~~ATg~GV~~~~~~al~~~g~~l~g~rvaIqGfG----~VG~~~A~~L~~e~GakiV~v~D~~G~i~~~~---GlD~~~L 109 (267) T 2tmg_A 37 EEATGRGVKVCAGLAMDVLGIDPKKATVAVQGFG----NVGQFAALLISQELGSKVVAVSDSRGGIYNPE---GFDVEEL 109 (267) T ss_dssp TTHHHHHHHHHHHHHHHHTTCCTTTCEEEEECCS----HHHHHHHHHHHHTTCCEEEEEECSSCEEECTT---CCCHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEC----CCHHHHHHHHHHHCCCEEEEEECCCCEEECCC---CCCHHHH T ss_conf 6678878899999888747998578759999806----81699998767757974999716773478875---6761679 Q ss_pred HHHHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCEECCCC Q ss_conf 99996689870038978717897089821444217989998709885542888999863036530443387421112689 Q gi|254780662|r 1002 KRLFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRAPR 1081 (1576) Q Consensus 1002 ~RLf~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYvka~~ 1081 (1576) .++.+.. -++.+|... ..++++ .++..++|+|.+|..+ T Consensus 110 ~~~~~~~-g~~~~~~~a------------------------------~~~~~~----~i~~~~~DV~iP~A~~------- 147 (267) T 2tmg_A 110 IRYKKEH-GTVVTYPKG------------------------------ERITNE----ELLELDVDILVPAALE------- 147 (267) T ss_dssp HHHHHHS-SCSTTCSSS------------------------------EEECHH----HHTTCSCSEEEECSST------- T ss_pred HHHHHHC-CCCCCCCCC------------------------------EECCCC----CCCCCCCCEEEECCCC------- T ss_conf 9999861-876556674------------------------------433641----0005765689645766------- Q ss_pred CCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHH Q ss_conf 86200152100000025883046899855510307678999997398683533134437324404767 Q gi|254780662|r 1082 ENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEVN 1149 (1576) Q Consensus 1082 e~~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~EVn 1149 (1576) ...+. -+...++||+|+||+|..+|+.++-.++.+|+.+.+|++.|+|||+||.+|.. T Consensus 148 -~~I~~---------e~a~~l~ak~VvegAN~plt~ea~~~L~~rGI~v~PD~~aNaGGVi~s~~E~~ 205 (267) T 2tmg_A 148 -GAIHA---------GNAERIKAKAVVEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWV 205 (267) T ss_dssp -TSBCH---------HHHTTCCCSEEECCSSSCBCHHHHHHHHHTTCEEECHHHHTCHHHHHHHHHHH T ss_pred -CCCCH---------HHHHHHHHCCEEECCCCCCCHHHHHHHHHCCEEEECHHHHCCCCEEEEHHHHH T ss_conf -77688---------89987622618715888889889999974891897768855887565579875 No 2 >>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} (A:177-395) Probab=99.09 E-value=1.4e-09 Score=101.65 Aligned_cols=208 Identities=20% Similarity=0.155 Sum_probs=151.9 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCC Q ss_conf 99884310114678999999999980899654864599605886332443111276620899973943686777881379 Q gi|254780662|r 918 MGYDHKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETT 997 (1576) Q Consensus 918 ~GydHK~mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s 997 (1576) .|.+|+..| |+.|++.+++.-++.+|.|+....+.+.|.|.-..-+ -.||+....+.++..|..+..+||+ +.+ T Consensus 4 gg~~dd~~g-Tg~gv~~~~~~~l~~~g~~l~~~rv~i~G~G~vg~~~--a~~l~~~g~~~i~~~d~~G~i~~~~---g~~ 77 (219) T 1v9l_A 4 WGNPVREYA-TGFGVAVATREMAKKLWGGIEGKTVAIQGMGNVGRWT--AYWLEKMGAKVIAVSDINGVAYRKE---GLN 77 (219) T ss_dssp SCCGGGGGH-HHHHHHHHHHHHHHHHHSCCTTCEEEEECCSHHHHHH--HHHHHTTTCEEEEEECSSCEEECTT---CCC T ss_pred CCCCCCCEE-EEEEEHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHH--HHHHHHCCCEEEEEECCCCCEECCC---CCC T ss_conf 656997628-9995534489999863278567769998425631577--7766523233899972687422512---111 Q ss_pred HHHHHHHHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCEE Q ss_conf 89999999668987003897871789708982144421798999870988554288899986303653044338742111 Q gi|254780662|r 998 FDERKRLFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYI 1077 (1576) Q Consensus 998 ~~Er~RLf~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYv 1077 (1576) ..+.+++++. +.++.+++...... ....+.+. .++..+.|+| + T Consensus 78 ~~~~~~~~~~-~~~~~~~~~~~~~~------------------------~~~~~~~~----~~~~~~~dI~--------~ 120 (219) T 1v9l_A 78 VELIQKNKGL-TGPALVELFTTKDN------------------------AEFVKNPD----AIFKLDVDIF--------V 120 (219) T ss_dssp THHHHHTTTS-CHHHHHHHHHHTSC------------------------CCCCSSTT----GGGGCCCSEE--------E T ss_pred HHHHHHHHHC-CCHHHEEEEECCCC------------------------CEEECCCH----HHCCCCCEEE--------E T ss_conf 6899998641-30010000002588------------------------37952753----4400450598--------4 Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 26898620015210000002588304689985551030767899999739868353313443732440476799986588 Q gi|254780662|r 1078 RAPRENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEVNIKIALASA 1157 (1576) Q Consensus 1078 ka~~e~~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~EVniKIll~~~ 1157 (1576) +|..++...- -+...++|++|+||+|..+|+.+.--+..+|+.+.+|...|++||.||.+|-+... T Consensus 121 p~a~~~ei~~---------e~a~~~~a~~v~~~an~p~t~~~~~~l~~~gv~v~Pd~~~naggv~~~~~e~~~~~----- 186 (219) T 1v9l_A 121 PAAIENVIRG---------DNAGLVKARLVVEGANGPTTPEAERILYERGVVVVPDILANAGGVIMSYLEWVENL----- 186 (219) T ss_dssp ECSCSSCBCT---------TTTTTCCCSEEECCSSSCBCHHHHHHHHTTTCEEECHHHHSTHHHHHHHHHHHHHH----- T ss_pred ECCCCCCCCH---------HHHHCCCCCEEEECCCCCCCHHHHHHHHHCCCEEECHHHHCCCCEEEEHHHHHCCC----- T ss_conf 1232100336---------55420212568706889888679999987896998868863876023378775201----- Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 77079898899889998789999999 Q gi|254780662|r 1158 MRDGRLTLENRNKLLSSMTSEVVELV 1183 (1576) Q Consensus 1158 ~~~g~lt~~~Rn~lL~~mtdeV~~lV 1183 (1576) ..-.-+.++=.+-+......+.+.| T Consensus 187 -~~~~~~~~~v~~~~~~i~~~~~~~v 211 (219) T 1v9l_A 187 -QWYIWDEEETRKRLENIMVNNVERV 211 (219) T ss_dssp -TTCCCCHHHHHHHHHHHHHHHHHHH T ss_pred -CCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf -2468999999999999999999999 No 3 >>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} (A:224-445) Probab=98.92 E-value=1.4e-08 Score=92.71 Aligned_cols=212 Identities=18% Similarity=0.205 Sum_probs=154.4 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHH--HCCCCCEEEEEECCCEEEECCCCCCCCCHHHH Q ss_conf 1011467899999999998089965486459960588633244311--12766208999739436867778813798999 Q gi|254780662|r 924 KMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGM--LLSRKIQLVAAFDHSDIFIDPDPNSETTFDER 1001 (1576) Q Consensus 924 ~mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgm--Lls~~i~lvaafdh~hif~DP~PD~~~s~~Er 1001 (1576) .++.|+.|++.+++.-.+.+|.+.....+.+.|- |+|..+-+ |...-.+.++..|+.+..+||+ +.+..+. T Consensus 4 r~~aTg~gv~~~~~~~~~~~g~~l~~~~v~i~G~----G~vG~~~a~~l~~~g~~~i~~~d~~g~i~~~~---g~~~~~l 76 (222) T 2bma_A 4 RVEATGYGLVYFVLEVLKSLNIPVEKQTAVVSGS----GNVALYCVQKLLHLNVKVLTLSDSNGYVYEPN---GFTHENL 76 (222) T ss_dssp TTTHHHHHHHHHHHHHHHTTTCCGGGCEEEEECS----SHHHHHHHHHHHHTTCEECEEEETTEEEECSS---CCCHHHH T ss_pred CCEEEEEEEHHHHHHHHHHCCCCCCCCEEEEECC----CCHHHHHHHHHHHCCCEEEEEECCCCEEEECC---CCCHHHH T ss_conf 8713676147889999975121658878999834----52689999987640746999986897599358---8888999 Q ss_pred HHHHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCEECCCC Q ss_conf 99996689870038978717897089821444217989998709885542888999863036530443387421112689 Q gi|254780662|r 1002 KRLFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRAPR 1081 (1576) Q Consensus 1002 ~RLf~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYvka~~ 1081 (1576) +++++.. .....+.....+...|++.... .+.+..+.|.|-+++ . T Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~If~~s~--------~ 121 (222) T 2bma_A 77 EFLIDLK-EEKKGRIKEYLNHSSTAKYFPN--------------------------EKPWGVPCTLAFPCA--------T 121 (222) T ss_dssp HHHHHHH-TTTTCCGGGGGGTCSSCEECSS--------------------------CCTTSSCCSEEEECS--------S T ss_pred HHHHHHH-HHCCCEEEEECCCCCCCEECCC--------------------------CCCCCCCEEEEECCC--------C T ss_conf 9999977-6507567321035676212378--------------------------643666707997677--------7 Q ss_pred CCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCC Q ss_conf 86200152100000025883046899855510307678999997398683533134437324404767999865887707 Q gi|254780662|r 1082 ENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEVNIKIALASAMRDG 1161 (1576) Q Consensus 1082 e~~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~EVniKIll~~~~~~g 1161 (1576) ++..+ .+++.....+ +|+++.||+|+.+|++++-.++.+|+.+.+|.+.|++||.+|..|....+... T Consensus 122 ~~ei~----~~~a~~~~~~--~~~~~a~~an~~~t~~~~~~lq~nnv~~~Pd~~~na~~v~~~~ie~~~~~~~~------ 189 (222) T 2bma_A 122 QNDVD----LDQAKLLQKN--GCILVGEGANMPSTVDAINLFKSNNIIYCPSKAANAGGVAISGLEMSQNFQFS------ 189 (222) T ss_dssp TTCBC----SHHHHHHHHT--TCCEEECCSSSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHHHHHHHTTC------ T ss_pred CHHHH----HHHHHHHHHC--CCEEEECCCCCCCCCHHHHHHHHCCCEEECHHHEECCCEEEEHHHHHHHHHCC------ T ss_conf 31120----5777655503--62799657898888047999997994997714512765454457888865106------ Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9898899889998789999999850078 Q gi|254780662|r 1162 RLTLENRNKLLSSMTSEVVELVLRNNYL 1189 (1576) Q Consensus 1162 ~lt~~~Rn~lL~~mtdeV~~lVL~~n~~ 1189 (1576) +...++=.+-+.+...+++..|++..+. T Consensus 190 ~~~~~~v~~~i~~~~~~~~~~v~~~a~~ 217 (222) T 2bma_A 190 HWTRETVDEKLKEIMRNIFIACSENALK 217 (222) T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8899999999999999999999999998 No 4 >>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} (A:202-449) Probab=98.77 E-value=2.4e-08 Score=90.64 Aligned_cols=184 Identities=15% Similarity=0.086 Sum_probs=137.2 Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC--HHHCCCCCEEEEEECCCEEEECCCCCCCCCHH Q ss_conf 4310114678999999999980899654864599605886332443--11127662089997394368677788137989 Q gi|254780662|r 922 HKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGN--GMLLSRKIQLVAAFDHSDIFIDPDPNSETTFD 999 (1576) Q Consensus 922 HK~mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGN--gmLls~~i~lvaafdh~hif~DP~PD~~~s~~ 999 (1576) |+-++-|+.|++.+++.-.+..|.++....+.+.|-|. |..+ .+|.....+.++..|+.+..+||+ +...+ T Consensus 2 ~d~~~~Tg~g~~~~l~~al~~~~~~l~g~~v~i~G~G~----vG~~~A~~l~~~G~~vi~~~d~~G~i~~~~---g~~~~ 74 (248) T 1bgv_A 2 LVRPEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGN----VAWGAAKKLAELGAKAVTLSGPDGYIYDPE---GITTE 74 (248) T ss_dssp TTTTTHHHHHHHHHHHHHHHHTTCCSTTCEEEECCSSH----HHHHHHHHHHHHTCEEEEEEETTEEEECTT---CSCSH T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCC----HHHHHHHHHHHHCCCEEEEECCCCEEEECC---CCCHH T ss_conf 98643344235999999999649996897799981682----799999998861650699865885499517---86748 Q ss_pred HHHHHHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCEECC Q ss_conf 99999966898700389787178970898214442179899987098855428889998630365304433874211126 Q gi|254780662|r 1000 ERKRLFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRA 1079 (1576) Q Consensus 1000 Er~RLf~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYvka 1079 (1576) +.++++... .+-.++.....+...|.+.... -.++..++|.|-++..+-.| T Consensus 75 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~--------------------------~~~~~~~~di~~~aa~~~~i-- 125 (248) T 1bgv_A 75 EKINYMLEM-RASGRNKVQDYADKFGVQFFPG--------------------------EKPWGQKVDIIMPCATQNDV-- 125 (248) T ss_dssp HHHHHHHHH-HHHCCCCTHHHHHHHTCEEEET--------------------------CCGGGSCCSEEECCSCTTCB-- T ss_pred HHHHHHHHH-HCCCCCCCHHHHHCCCCEECCC--------------------------CCCCCCCCEEEEECCCCCCC-- T ss_conf 899999985-0114664022232058433243--------------------------32356786099837876645-- Q ss_pred CCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHH-HHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHH Q ss_conf 89862001521000000258830468998555103076789-999973986835331344373244047679998 Q gi|254780662|r 1080 PRENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQAR-VVYSLNGGRINSDAIDNSGGVNCSDLEVNIKIA 1153 (1576) Q Consensus 1080 ~~e~~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~R-ie~a~~Gg~intDaidNsaGV~~Sd~EVniKIl 1153 (1576) +. ++.-++... +|++|.||+|..+|+.++ +.+..+|..+++|...|++||.+|.+|-+-.+. T Consensus 126 ----~~------~~a~~l~~~--~~~~i~~~an~~~~~~~~~~~l~~~gvlv~P~~~~naggv~~~~~e~~~~~~ 188 (248) T 1bgv_A 126 ----DL------EQAKKIVAN--NVKYYIEVANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQNSE 188 (248) T ss_dssp ----CH------HHHHHHHHT--TCCEEECCSSSCBCHHHHHHHHHCTTCEEECHHHHTTHHHHHHHHHHHHHHH T ss_pred ----CH------HHHHHHHCC--CCEEEECCCCCCCCCHHHHHHHHHCCEEEECHHHHCCCCHHHHHHHHHHHHC T ss_conf ----43------454344306--8249973788876746789999849979976488427258787999987540 No 5 >>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus dsm 3638} (A:183-393) Probab=98.59 E-value=1.3e-06 Score=75.35 Aligned_cols=191 Identities=25% Similarity=0.216 Sum_probs=138.4 Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCH--HHCCC-CCEEEEEECCCEEEECCCCCCCCCH Q ss_conf 43101146789999999999808996548645996058863324431--11276-6208999739436867778813798 Q gi|254780662|r 922 HKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNG--MLLSR-KIQLVAAFDHSDIFIDPDPNSETTF 998 (1576) Q Consensus 922 HK~mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNg--mLls~-~i~lvaafdh~hif~DP~PD~~~s~ 998 (1576) |+..+.|+.|+..+++.-.+.+|.+.- ...+|+.+| .|.|.++- +|+.+ ..++++..|.++..++++ +.+. T Consensus 2 ~d~~~~T~~gv~~~~~~al~~~~~~~~-~~~~v~i~G--~G~VG~~~~~~L~~~~~~~vv~~~d~~~~i~~~~---g~d~ 75 (211) T 1gtm_A 2 LGRIEATARGASYTIREAAKVLGWDTL-KGKTIAIQG--YGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPD---GLNA 75 (211) T ss_dssp TTTTTHHHHHHHHHHHHHHHHTTCSCS-TTCEEEEEC--CSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEE---EECH T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCC-CCCEEEECC--CCHHHHHHHHHHHHCCCEEEEEEECCCCEEECCC---CCCH T ss_conf 775233569999999999998289886-797799708--8746899999997339748999725785276587---6789 Q ss_pred HHHHHHHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCEEC Q ss_conf 99999996689870038978717897089821444217989998709885542888999863036530443387421112 Q gi|254780662|r 999 DERKRLFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIR 1078 (1576) Q Consensus 999 ~Er~RLf~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYvk 1078 (1576) .+..+...-. ..+.++..... ..++ .++..++|.+.+++.+.-+ T Consensus 76 ~~~~~~~~~~-~~~~~~~~~~~------------------------------~~~~----~~~~~~~dv~~~~a~~~~i- 119 (211) T 1gtm_A 76 DEVLKWKNEH-GSVKDFPGATN------------------------------ITNE----ELLELEVDVLAPAAIEEVI- 119 (211) T ss_dssp HHHHHHHHHH-SSSTTCTTSEE------------------------------ECHH----HHHHSCCSEEEECSCSCCB- T ss_pred HHHHHHHHHC-CCEECCCCCEE------------------------------CCCC----CCCCCCCEEEEECCCCCCC- T ss_conf 9999998622-45001467501------------------------------0443----1233461088323420315- Q ss_pred CCCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 68986200152100000025883046899855510307678999997398683533134437324404767999865887 Q gi|254780662|r 1079 APRENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEVNIKIALASAM 1158 (1576) Q Consensus 1079 a~~e~~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~EVniKIll~~~~ 1158 (1576) . ..+..-++++.|++++|-.+++...-++..+|+.+..|+..|.+|+.+|..||.-.. .+ T Consensus 120 -------~---------~~~~~~~~~~~vv~~an~~~~~~~~~~l~~~gv~~~~~~~v~ag~~i~~~~ei~~~~----gi 179 (211) T 1gtm_A 120 -------T---------KKNADNIKAKIVAEVANGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFEWVQNI----TG 179 (211) T ss_dssp -------C---------TTGGGGCCCSEEECCSSSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHHHHHHH----HC T ss_pred -------C---------HHHHHHHHHCEEEEECCCCCCHHHHHHHHHCCEEEECCHHHCCCCEEEEHHHHHHHH----CC T ss_conf -------7---------867623110424752589999789999987893997825534876566699987543----04 Q ss_pred HCCCCCHHHHHHHHHHHHHHH Q ss_conf 707989889988999878999 Q gi|254780662|r 1159 RDGRLTLENRNKLLSSMTSEV 1179 (1576) Q Consensus 1159 ~~g~lt~~~Rn~lL~~mtdeV 1179 (1576) .+| | -|.+|..|++++ T Consensus 180 ~~g--T---~n~Il~~~~~~~ 195 (211) T 1gtm_A 180 YYW--T---IEEVRERLDKKM 195 (211) T ss_dssp CCC--C---HHHHHHHHHHHH T ss_pred CCC--C---HHHHHHHHHHHH T ss_conf 788--9---999999999999 No 6 >>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} (A:1-137) Probab=98.57 E-value=5.7e-07 Score=78.49 Aligned_cols=115 Identities=22% Similarity=0.248 Sum_probs=87.6 Q ss_pred CCCCCEEEEEECCC--EEEE---EEECCCCCCCEEEE--ECCHHHHHHHHHHHHHHHHHCCC--CCCCCCCCEEEEECCC Q ss_conf 88785699998386--5799---84054233040420--08857888889998998453287--4288875327871689 Q gi|254780662|r 760 TDELHREIFVYGVE--VEGV---HLRCGKIARGGLRW--SDRAADYRTEVLGLVRAQKVKNA--VIVPVGAKGGFYPKRL 830 (1576) Q Consensus 760 ~p~P~~eifv~sp~--~eGv---HlR~g~vARGGlRw--SdR~edfrtEvlgL~kaQ~vKN~--vIvp~GaKGgfv~k~~ 830 (1576) .+.|...++++++. +.|+ |-+..-.|.||+|+ +...|++.+|++.|+++++.||| .|+-+|+|||+.+. T Consensus 9 ~~~~e~v~~~~~~~~~~~~~~~~h~~~~Gpa~GG~R~~~~~s~e~~l~dv~~LA~~Mt~K~al~~lp~GGgKgvI~~~-- 86 (137) T 1leh_A 9 KYDYEQLVFCQDEASGLKAVIAIHDTTLGPALGGARMWTYNAEEEAIEDALRLARGMTYKNAAAGLNLGGGKTVIIGD-- 86 (137) T ss_dssp HHTCCEEEEEEETTTTEEEEEEEEECSSSSEECCEEEECCSCHHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEEEESC-- T ss_pred CCCCEEEEEEECCCCCCEEEEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC-- T ss_conf 269718999846877967999992599887430497147897777899999999999999998289988748999679-- Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCH-HHHHHHHHHHHCCCC Q ss_conf 98899899999999999999989887762568884028831030538986799817788832-689999999880899 Q gi|254780662|r 831 PSEGRRDEIIKIGREAYKTYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTAT-FSDTANILAQEAKFW 907 (1576) Q Consensus 831 ~~~~~r~~~~~e~~~~y~~fi~~lLditDN~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~-fsD~An~ia~~~gfw 907 (1576) |...++.+ ....++.|++.|-+. .+.|+|-||.. -++|. ..+++|- T Consensus 87 p~~~~~~e----l~~~~~~~v~~L~~~------------------------~i~g~D~gt~~~dm~~i---~~~~~~~ 133 (137) T 1leh_A 87 PFADKNED----MFRALGRFIQGLNGR------------------------YITAEDVGTTVDDMDLI---HQETDYV 133 (137) T ss_dssp TTTTCCHH----HHHHHHHHHHTTTTS------------------------EEBCBCTTCCHHHHHHH---HTTCSCB T ss_pred CCCCCHHH----HHHHHHHHHHHHCCC------------------------CCCCCCCCCCHHHHHHH---HHHHHHC T ss_conf 98678899----999999999985687------------------------63467667666999999---8665410 No 7 >>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus dsm 3638} (A:1-182,A:394-419) Probab=97.42 E-value=0.0072 Score=42.07 Aligned_cols=138 Identities=20% Similarity=0.196 Sum_probs=81.8 Q ss_pred EEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCC--CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 79984054233040420088578888899989984532874--2888753278716899889989999999999999998 Q gi|254780662|r 775 EGVHLRCGKIARGGLRWSDRAADYRTEVLGLVRAQKVKNAV--IVPVGAKGGFYPKRLPSEGRRDEIIKIGREAYKTYVR 852 (1576) Q Consensus 775 eGvHlR~g~vARGGlRwSdR~edfrtEvlgL~kaQ~vKN~v--Ivp~GaKGgfv~k~~~~~~~r~~~~~e~~~~y~~fi~ 852 (1576) .-+|=.-.--+-||+|++.-.. ..|++.|+..+..||+. ++=+|+|||+.+. |..-+.. |-.+-.+.|.+ T Consensus 57 rv~Hn~~~GPakGGiR~~~~vt--~~ev~~LA~~MT~K~Al~~lp~GGgKggI~~d--P~~~s~~----e~e~i~r~f~~ 128 (208) T 1gtm_A 57 RVQHNWARGPTKGGIRWHPEET--LSTVKALAAWMTWKTAVMDLPYGGGKGGIIVD--PKKLSDR----EKERLARGYIR 128 (208) T ss_dssp EEEEECTTSSEECCEEECTTCC--HHHHHHHHHHHHHHHHHTTCSCEEEEEEEECC--GGGSCHH----HHHHHHHHHHH T ss_pred EEEECCCCCCCCCCEECCCCCC--HHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC--CCCCCHH----HHHHHHHHHHH T ss_conf 9996588788867434068779--99999999987898875048988844699579--6447989----99999999999 Q ss_pred HHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCH-HHHHH-HHHHHHCCCCCCC-HHCCCCCCCCCCCCCCCCH Q ss_conf 9887762568884028831030538986799817788832-68999-9999880899850-1105699998843101146 Q gi|254780662|r 853 ALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTAT-FSDTA-NILAQEAKFWLDD-AFASGGSMGYDHKKMGITA 929 (1576) Q Consensus 853 ~lLditDN~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~-fsD~A-n~ia~~~gfwlgd-AFaSGgs~GydHK~mGITa 929 (1576) .|-.+. |.+ .-|-|+|=||-. -++|. -+...-.|.|-++ +-.+|++ --.-|-.- T Consensus 129 ~l~~l~------------------G~~-~dv~apDvGt~~~dMa~i~d~~~~~~g~~~~~~g~~Tgkp----v~~gG~~~ 185 (208) T 1gtm_A 129 AIYDVI------------------SPY-EDIPAPDVYTNPQIMAWMMDEYETISRRKTPAFGIITGKP----LSIGGHMR 185 (208) T ss_dssp HHGGGC------------------BTT-TEECCBCTTCCHHHHHHHHHHHHHHHTTSSCGGGGCSSCC----GGGTCCHH T ss_pred HHHHCC------------------CCC-CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC----CCCCCCHH T ss_conf 974436------------------986-6606775777877737888888886087556667768998----66788999 Q ss_pred HHH-HHHHHHHHHHC Q ss_conf 789-99999999980 Q gi|254780662|r 930 RGA-WETVKRHFREM 943 (1576) Q Consensus 930 rGa-w~~v~rhfrel 943 (1576) -.| -+.|+|.+..| T Consensus 186 ~~~~~~~~~~~~~~~ 200 (208) T 1gtm_A 186 DAAYVVAVQRVYQAM 200 (208) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999999999999 No 8 >>1hwx_A GDH, glutamate dehydrogenase; allostery, abortive complex, oxidoreductase; HET: GLU GTP NAI; 2.50A {Bos taurus} (A:242-372) Probab=97.37 E-value=0.0017 Score=47.67 Aligned_cols=125 Identities=23% Similarity=0.137 Sum_probs=88.5 Q ss_pred EEEEEECCCCCCCCCC--HHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEEE Q ss_conf 4599605886332443--11127662089997394368677788137989999999668987003897871789708982 Q gi|254780662|r 952 FTVAGVGDMSGDVFGN--GMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRKVLSKGGMIISR 1029 (1576) Q Consensus 952 fTvvgiGdmsGDVfGN--gmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~lprssw~dyd~~liS~gGgv~~r 1029 (1576) -||+-.| .|.|... -+|...-+|+++..|..+..++|+ +.+..+..++.+..++....... .. T Consensus 4 ~rV~i~G--~G~VG~~~a~~L~~~G~kvv~v~d~~G~i~~~~---G~d~~~l~~~~~~~~~~~~~~~~-~~--------- 68 (131) T 1hwx_A 4 KTFAVQG--FGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPD---GIDPKELEDFKLQHGTILGFPKA-KI--------- 68 (131) T ss_dssp CEEEEEC--CSHHHHHHHHHHHHTTCEEEEEEETTEEECCTT---CCCHHHHHHHHHTTSSSTTCTTS-CB--------- T ss_pred CEEEEEC--CCHHHHHHHHHHHHCCCEEEEEECCCCCEECCC---CCCHHHHHHHHHHCCCEECCCCC-CC--------- T ss_conf 6799979--871558999777735747999974788354475---42326799999961973215665-44--------- Q ss_pred CCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCEECCCCCEEEEEEEE Q ss_conf 14442179899987098855428889998630365304433874211126898620015210000002588304689985 Q gi|254780662|r 1030 KEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRAPRENNADIGDKGNNILRVTADKVRAKVIGE 1109 (1576) Q Consensus 1030 ~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYvka~~e~~~~vgd~and~~rv~g~~lr~kvi~E 1109 (1576) . ...++..++|+|-++. .+.-. .+ -++..+++|+|+| T Consensus 69 ----------------------~----~~~~~~~~~dili~~a--------~~~~i-~~--------e~a~~~~a~~i~~ 105 (131) T 1hwx_A 69 ----------------------Y----EGSILEVDCDILIPAA--------SEKQL-TK--------SNAPRVKAKIIAE 105 (131) T ss_dssp ----------------------C----CSCGGGCCCSEEEECS--------SSSCB-CT--------TTGGGCCCSEEEC T ss_pred ----------------------C----CCCCCCCCCCEEEECC--------CCCCC-CH--------HHHHHCCCEEEEC T ss_conf ----------------------6----8530033444870023--------45657-78--------6785358749981 Q ss_pred CCCCCCCHHHHHHHHHCCCEEECCC Q ss_conf 5510307678999997398683533 Q gi|254780662|r 1110 GANLGLTQQARVVYSLNGGRINSDA 1134 (1576) Q Consensus 1110 G~NLg~Tq~~Rie~a~~Gg~intDa 1134 (1576) |+|-.+|+++...+..+|+.+.+|. T Consensus 106 gan~~~~~~~~~~l~~~gilv~Pdi 130 (131) T 1hwx_A 106 GANGPTTPQADKIFLERNIMVIPDL 130 (131) T ss_dssp CSSSCBCHHHHHHHHHTTCEEECHH T ss_pred CCCCCCCHHHHHHHHHCCCEEECCH T ss_conf 6889889789999998898896812 No 9 >>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} (A:1-223,A:446-470) Probab=97.37 E-value=0.0074 Score=41.99 Aligned_cols=122 Identities=19% Similarity=0.087 Sum_probs=82.5 Q ss_pred EEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCC--CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 579984054233040420088578888899989984532874--288875327871689988998999999999999999 Q gi|254780662|r 774 VEGVHLRCGKIARGGLRWSDRAADYRTEVLGLVRAQKVKNAV--IVPVGAKGGFYPKRLPSEGRRDEIIKIGREAYKTYV 851 (1576) Q Consensus 774 ~eGvHlR~g~vARGGlRwSdR~edfrtEvlgL~kaQ~vKN~v--Ivp~GaKGgfv~k~~~~~~~r~~~~~e~~~~y~~fi 851 (1576) +..+|=.-.--+.||+|+..-. =..|++.|+..+..||++ +|=+|+|||+.+. |..-++. |..+.++.|+ T Consensus 100 ~rvqHn~~lGPakGGiR~~p~v--t~~ev~~LA~~MT~K~Al~gLp~GGgKggI~~d--P~~~s~~----El~r~~~~fv 171 (248) T 2bma_A 100 FRVQYNSALGPYKGGLRFHPSV--NLSIVKFLGFEQIFKNSLTGLSMGGGKGGSDFD--PKGKSDN----EILKFCQAFM 171 (248) T ss_dssp EEEEEECSSSSEEEEEEECTTC--CHHHHHHHHHHHHHHHHHTCSSCEEEEEEESCC--CTTCCHH----HHHHHHHHHH T ss_pred EEEEECCCCCCCCCCEEECCCC--CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC--CCCCCHH----HHHHHHHHHH T ss_conf 9999768767777872775445--378999888888998875178867876599658--9899989----9999999987 Q ss_pred HHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCH-HHHHHHHHHHH-CCCCCCCHHCCCCC---CCCCCCC Q ss_conf 89887762568884028831030538986799817788832-68999999988-08998501105699---9988431 Q gi|254780662|r 852 RALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTAT-FSDTANILAQE-AKFWLDDAFASGGS---MGYDHKK 924 (1576) Q Consensus 852 ~~lLditDN~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~-fsD~An~ia~~-~gfwlgdAFaSGgs---~GydHK~ 924 (1576) +.|=.+.- . -. =+-|+|=||.. -+.|......+ .|... +-.+|++ .|||-.+ T Consensus 172 ~~L~~~iG---p-----d~-----------Dipa~Di~t~~~em~~i~d~y~~~~g~~p--~~~TGk~v~~GG~~~~~ 228 (248) T 2bma_A 172 NELYRHIG---P-----CT-----------DVPAGDIGVGGREIGYLYGQYKKIVNSFN--GTLTGKNVKWGGYDLQA 228 (248) T ss_dssp HHHGGGCB---T-----TT-----------EEEECCSSCCHHHHHHHHHHHHHHHCCCS--CSSSSCCGGGTCSCHHH T ss_pred HHHCCCCC---C-----EE-----------EECCCCCCCCHHHHHHHHHHHHHCCCCCE--EEECCCCHHHCCCCHHH T ss_conf 76346789---7-----15-----------73578756327889899997642168623--56558965538999999 No 10 >>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} (A:1-176,A:396-421) Probab=97.30 E-value=0.004 Score=44.38 Aligned_cols=135 Identities=20% Similarity=0.250 Sum_probs=79.8 Q ss_pred EEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCC--CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 579984054233040420088578888899989984532874--288875327871689988998999999999999999 Q gi|254780662|r 774 VEGVHLRCGKIARGGLRWSDRAADYRTEVLGLVRAQKVKNAV--IVPVGAKGGFYPKRLPSEGRRDEIIKIGREAYKTYV 851 (1576) Q Consensus 774 ~eGvHlR~g~vARGGlRwSdR~edfrtEvlgL~kaQ~vKN~v--Ivp~GaKGgfv~k~~~~~~~r~~~~~e~~~~y~~fi 851 (1576) +.-+|=.-.-.+.||+|++.-. -..|++.|+..+.+||++ ++=+|+|||+.+. |..-+. .|..+-.+.|+ T Consensus 57 ~rv~Hn~~~GPakGGiR~~~~~--t~~ev~~LA~~MT~K~Al~~lp~GGgKgGI~~d--P~~~s~----~e~erl~r~f~ 128 (202) T 1v9l_A 57 YRVQHCDVLGPYKGGVRFHPEV--TLADDVALAILMTLKNSLAGLPYGGAKGAVRVD--PKKLSQ----RELEELSRGYA 128 (202) T ss_dssp EEEEEECSSSSEEEEEECCTTC--CHHHHHHHHHHHHHHHHHTTCSCCEEEEEECSC--GGGSCH----HHHHHHHHHHH T ss_pred EEEEECCCCCCCCCCEECCCCC--CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC--CCCCCH----HHHHHHHHHHH T ss_conf 9999768878775515516877--899999999998998876138768886268368--655556----78999999999 Q ss_pred HHHHHHHHCCCCCCCCCCCCCEECCCCCCEE-EEECCCCCCH--HHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCC Q ss_conf 8988776256888402883103053898679-9817788832--689999999880899850110569999884310114 Q gi|254780662|r 852 RALLSITDNFEGQEIIHPDNTVCLDGNDPYF-VVAADKGTAT--FSDTANILAQEAKFWLDDAFASGGSMGYDHKKMGIT 928 (1576) Q Consensus 852 ~~lLditDN~~~g~vv~p~~vv~~d~~d~yl-vvaaDkgTa~--fsD~An~ia~~~gfwlgdAFaSGgs~GydHK~mGIT 928 (1576) +.|=.+. .||. |.|+|=||-. +.-++.+.+.-.|..-.. -.+|++ |-| T Consensus 129 ~~l~~li--------------------G~~~dvpapDvGt~~~dM~~i~de~~~~~g~~~~~-~~TGkP--------~~~ 179 (202) T 1v9l_A 129 RAIAPLI--------------------GDVVDIPAPDVGTNAQIMAWMVDEYSKIKGYNVPG-VFTSKP--------GWT 179 (202) T ss_dssp HHHGGGC--------------------BTTTEEEECCTTCCHHHHHHHHHHHHHHHTSCCGG-GSCSCC--------SCC T ss_pred HHHHHCC--------------------CCCCEECCCCCCCCHHHHHHHHCCEEEEECCCCCC-CCCCCC--------CCC T ss_conf 9864047--------------------87514427875046656112324030332110011-235777--------999 Q ss_pred HHHH--HHHHHHHHHHCCC Q ss_conf 6789--9999999998089 Q gi|254780662|r 929 ARGA--WETVKRHFREMDI 945 (1576) Q Consensus 929 arGa--w~~v~rhfrelg~ 945 (1576) -|-| -...+|.+..|.| T Consensus 180 ~~~~~~~~~~~~~~~~~~~ 198 (202) T 1v9l_A 180 MRDAAIVTALERIYNAMKI 198 (202) T ss_dssp HHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 8999999999999999996 No 11 >>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} (A:1-144) Probab=97.24 E-value=0.0075 Score=41.92 Aligned_cols=125 Identities=18% Similarity=0.031 Sum_probs=82.0 Q ss_pred CCCCCCCCEEEEEECCC-----EEEEEEECCCCCCCEEEEE--CCHHHHHHHHHHHHHHHHHCCCC--CCCCCCCEEEEE Q ss_conf 88888785699998386-----5799840542330404200--88578888899989984532874--288875327871 Q gi|254780662|r 757 SVGTDELHREIFVYGVE-----VEGVHLRCGKIARGGLRWS--DRAADYRTEVLGLVRAQKVKNAV--IVPVGAKGGFYP 827 (1576) Q Consensus 757 ~~p~p~P~~eifv~sp~-----~eGvHlR~g~vARGGlRwS--dR~edfrtEvlgL~kaQ~vKN~v--Ivp~GaKGgfv~ 827 (1576) .+|...|...++++.+. +..+|=.-.--|-||+|+. ...++.-++++.|+....+||++ |+=+|+|||+.+ T Consensus 4 ~~~~~~~e~v~~~~d~~~g~~~~~~~h~~~~GPa~GG~R~~~~~s~~eal~Dv~~La~~MT~K~Al~~lp~GGgKg~I~~ 83 (144) T 1c1d_A 4 SALNWDGEMTVTRFDAMTGAHFVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIAL 83 (144) T ss_dssp HHHCCCSSEEEEEEETTTTEEEEEEEEECSSSSEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEEEEC T ss_pred CCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC T ss_conf 45588984799985567675489999369988867748704889989999999999999999999708998874658833 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCH-HHHHHHHHHHHCCC Q ss_conf 68998899899999999999999989887762568884028831030538986799817788832-68999999988089 Q gi|254780662|r 828 KRLPSEGRRDEIIKIGREAYKTYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTAT-FSDTANILAQEAKF 906 (1576) Q Consensus 828 k~~~~~~~r~~~~~e~~~~y~~fi~~lLditDN~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~-fsD~An~ia~~~gf 906 (1576) ... .....+.-++.-.+.|-.+|+.|.+. .+.|+|=||.. -++|. ..++++ T Consensus 84 dp~-~~~~~~~e~e~l~r~~~~~l~~l~g~------------------------~i~a~Dvgt~~~dM~~i---~~~~~~ 135 (144) T 1c1d_A 84 PAP-RHSIDPSTWARILRIHAENIDKLSGN------------------------YWTGPDVNTNSADMDTL---NDTTEF 135 (144) T ss_dssp SSC-GGGCCHHHHHHHHHHHHHHHHHTTTS------------------------EEEEECTTCCHHHHHHH---HHHCSC T ss_pred CCC-CCCCCHHHHHHHHHHHHHHHHHCCCC------------------------CCCCCCCCCCHHHHHHH---HHHCCC T ss_conf 885-46558789999999999973002323------------------------32035678878999999---755273 Q ss_pred CCC Q ss_conf 985 Q gi|254780662|r 907 WLD 909 (1576) Q Consensus 907 wlg 909 (1576) =-| T Consensus 136 vtG 138 (144) T 1c1d_A 136 VFG 138 (144) T ss_dssp BCC T ss_pred CCC T ss_conf 245 No 12 >>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} (A:1-201) Probab=97.05 E-value=0.018 Score=38.66 Aligned_cols=116 Identities=18% Similarity=0.097 Sum_probs=74.9 Q ss_pred EEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCC--CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 579984054233040420088578888899989984532874--288875327871689988998999999999999999 Q gi|254780662|r 774 VEGVHLRCGKIARGGLRWSDRAADYRTEVLGLVRAQKVKNAV--IVPVGAKGGFYPKRLPSEGRRDEIIKIGREAYKTYV 851 (1576) Q Consensus 774 ~eGvHlR~g~vARGGlRwSdR~edfrtEvlgL~kaQ~vKN~v--Ivp~GaKGgfv~k~~~~~~~r~~~~~e~~~~y~~fi 851 (1576) +..+|=.-.--|.||+|+..-... .|++.|+..+..||++ ++=+|+|||+.+. |...++. |..+.++.|+ T Consensus 77 ~rv~hn~~~GPakGGiR~~~~~~~--~ev~~La~~MT~K~Al~~lp~GGgKggI~~d--P~~~s~~----el~r~~~~f~ 148 (201) T 1bgv_A 77 YRVQFNGAIGPYKGGLRFAPSVNL--SIMKFLGFEQAFKDSLTTLPMGGAKGGSDFD--PNGKSDR----EVMRFCQAFM 148 (201) T ss_dssp EEEEEECSSSSEEEEEEECTTCCH--HHHHHHHHHHHHHHHHTSSSCCEEEEEESCC--CTTCCHH----HHHHHHHHHH T ss_pred EEEEECCCCCCCCCCEEECCCCHH--HHHHHHHHHHHHHHHHCCCCCCCCCEEEECC--CCCCCHH----HHHHHHHHHH T ss_conf 999964876765676266520128--9999999888887644167767876599468--8899999----9999999999 Q ss_pred HHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCH-HHHHHHHHHHH-CCCCCCCHHCCCCC Q ss_conf 89887762568884028831030538986799817788832-68999999988-08998501105699 Q gi|254780662|r 852 RALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTAT-FSDTANILAQE-AKFWLDDAFASGGS 917 (1576) Q Consensus 852 ~~lLditDN~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~-fsD~An~ia~~-~gfwlgdAFaSGgs 917 (1576) +.|-.++ |.|- =+-|+|=||-. =+.|.-..... .|.+-. +-.+|++ T Consensus 149 ~~l~~~i------------------G~d~-di~a~Dm~t~~~~m~~i~~~~~~~~g~~~~-~~~Tgkg 196 (201) T 1bgv_A 149 TELYRHI------------------GPDI-DVPAGDLGVGAREIGYMYGQYRKIVGGFYN-GVLTGKA 196 (201) T ss_dssp HHHGGGC------------------BTTT-EEEECBTTBCHHHHHHHHHHHHHHHTSCCG-GGSSSCC T ss_pred HHHCCCC------------------CCCC-CCCHHHCCCCHHHHHHHHHHCCCCCCCCCC-CCCCCCC T ss_conf 8745335------------------7887-768787183298888998620013444322-5566886 No 13 >>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} (A:33-180) Probab=96.92 E-value=0.012 Score=40.01 Aligned_cols=116 Identities=22% Similarity=0.144 Sum_probs=70.5 Q ss_pred EEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCC--CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 579984054233040420088578888899989984532874--288875327871689988998999999999999999 Q gi|254780662|r 774 VEGVHLRCGKIARGGLRWSDRAADYRTEVLGLVRAQKVKNAV--IVPVGAKGGFYPKRLPSEGRRDEIIKIGREAYKTYV 851 (1576) Q Consensus 774 ~eGvHlR~g~vARGGlRwSdR~edfrtEvlgL~kaQ~vKN~v--Ivp~GaKGgfv~k~~~~~~~r~~~~~e~~~~y~~fi 851 (1576) +..+|=.-.--|.||+|++.-.. ..|++.|++.+.+||++ ++=+|+|||+.+. |...+.+ |..+..+.|+ T Consensus 24 ~r~~h~~~~GPa~GGiR~~~~~s--~~ev~~LA~~MT~K~Al~~lp~GGgKggI~~d--P~~~~~~----e~~r~~~~f~ 95 (148) T 2tmg_A 24 YRVQHNVARGPAKGGIRYHPDVT--LDEVKALAFWMTWKTAVMNLPFGGGKGGVRVD--PKKLSRR----ELERLSRRFF 95 (148) T ss_dssp EEEEEECTTSSEECCEEEESSCC--HHHHHHHHHHHHHHHHHHTCSCCEEEEEEECC--GGGSCHH----HHHHHHHHHH T ss_pred EEEEECCCCCCCCCEEEECCCCC--HHHHHHHHHHHHHHHHHCCCCCCCCCEEEECC--CCCCCHH----HHHHHHHHHH T ss_conf 89997798788766043168788--99999999998887601357889876599677--6668878----8999999999 Q ss_pred HHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCH-HHHHHHHHHHHCCCCCCC-HHCCCCC Q ss_conf 89887762568884028831030538986799817788832-689999999880899850-1105699 Q gi|254780662|r 852 RALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTAT-FSDTANILAQEAKFWLDD-AFASGGS 917 (1576) Q Consensus 852 ~~lLditDN~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~-fsD~An~ia~~~gfwlgd-AFaSGgs 917 (1576) +.|-.+. |.+ .-+.|+|=||-. -++|....- .|..+..| +-.+|++ T Consensus 96 ~~l~~l~------------------G~~-~~i~a~Dvgt~~~dM~~i~~~~-~~~~g~~~~~~~Tgk~ 143 (148) T 2tmg_A 96 REIQVII------------------GPY-NDIPAPDVNTNADVIAWYMDEY-EMNVGHTVLGIVTGKP 143 (148) T ss_dssp HHTGGGC------------------BTT-TEECCBCTTCCHHHHHHHHHHH-HHHHSSCCCCSCSSCC T ss_pred HHHHHCC------------------CCC-EEEECCCCCCCHHHHHHHCCCC-CCCCCCCEEEEECCCC T ss_conf 9985167------------------885-4750565445765641112442-2124762145770788 No 14 >>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCSG, protein structure initiative, PSI; 2.61A {Thermotoga maritima MSB8} (A:168-323) Probab=96.75 E-value=0.0061 Score=42.70 Aligned_cols=146 Identities=16% Similarity=0.121 Sum_probs=100.4 Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHC Q ss_conf 46789999999999808996548645996058863324431112766208999739436867778813798999999966 Q gi|254780662|r 928 TARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDS 1007 (1576) Q Consensus 928 TarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~l 1007 (1576) |+.|+..+++.-.|..|.++....+-+.|.|.+..=+. .+|...-.+.++..|..+...||....... ......... T Consensus 4 Tg~gv~~~~~~a~~~~~~~l~~~~v~v~G~G~vG~~~a--~~l~~~Ga~~i~v~d~~g~~~~~~~~~~~~-~~~~~~~~~ 80 (156) T 1vl6_A 4 TAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIV--KFLLDLGVKNVVAVDRKGILNENDPETCLN-EYHLEIARI 80 (156) T ss_dssp HHHHHHHHHHHHHHHHTCCTTTCEEEEECCSHHHHHHH--HHHHHHTCCEEEEEETTEECCTTSGGGCSS-HHHHHHHHT T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHH--HHHHHHCCCCEEEEEEEEEEECCCCCCCCC-HHHHHHHHH T ss_conf 78899999999998607874434899954637889999--999984786159995011675588644411-778998776 Q ss_pred CCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCEECCCCCCCCCC Q ss_conf 89870038978717897089821444217989998709885542888999863036530443387421112689862001 Q gi|254780662|r 1008 PSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRAPRENNADI 1087 (1576) Q Consensus 1008 prssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYvka~~e~~~~v 1087 (1576) ..+.+ ...+. .++..++|+|-+++ .+.-.. T Consensus 81 ~~~~~-------------------------------------~~~~~----~~~~~~~DIlip~a--------~~~~i~- 110 (156) T 1vl6_A 81 TNPER-------------------------------------LSGDL----ETALEGADFFIGVS--------RGNILK- 110 (156) T ss_dssp SCTTC-------------------------------------CCSCH----HHHHTTCSEEEECS--------CSSCSC- T ss_pred HHHCC-------------------------------------CCCCH----HHHCCCCCEEEECC--------CCCCCC- T ss_conf 20011-------------------------------------10017----76425872564214--------567476- Q ss_pred CCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEE----CCC Q ss_conf 52100000025883046899855510307678999997398683----533 Q gi|254780662|r 1088 GDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRIN----SDA 1134 (1576) Q Consensus 1088 gd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~in----tDa 1134 (1576) .-+.+.+.||.|+|++|-.+|+.+.-++-.+|+.+. .|+ T Consensus 111 --------~e~~~~~~~r~Iv~~an~P~~~~~~~~l~~~g~~ivatG~pd~ 153 (156) T 1vl6_A 111 --------PEWIKKXSRKPVIFALANPVPEIDPELAREAGAFIVATGRSDH 153 (156) T ss_dssp --------HHHHTTSCSSCEEEECCSSSCSSCHHHHHHTTCSEEEESCTTS T ss_pred --------HHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCEEEECCCCCC T ss_conf --------9888505899889982697244555335424959997698078 No 15 >>1hwx_A GDH, glutamate dehydrogenase; allostery, abortive complex, oxidoreductase; HET: GLU GTP NAI; 2.50A {Bos taurus} (A:1-207,A:475-501) Probab=95.79 E-value=0.032 Score=36.36 Aligned_cols=143 Identities=22% Similarity=0.198 Sum_probs=85.3 Q ss_pred EEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCC--CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 984054233040420088578888899989984532874--288875327871689988998999999999999999898 Q gi|254780662|r 777 VHLRCGKIARGGLRWSDRAADYRTEVLGLVRAQKVKNAV--IVPVGAKGGFYPKRLPSEGRRDEIIKIGREAYKTYVRAL 854 (1576) Q Consensus 777 vHlR~g~vARGGlRwSdR~edfrtEvlgL~kaQ~vKN~v--Ivp~GaKGgfv~k~~~~~~~r~~~~~e~~~~y~~fi~~l 854 (1576) +|=.-.--+-||+|+..-.. ..|++.|+..+..||+. ++=+|+|||+.+. |..-+++ |-.+.++.|+..| T Consensus 81 ~Hn~~lGPakGGiR~~p~vt--~~ev~~LA~~MT~K~AlaglP~GGgKggI~~d--P~~~s~~----Eler~~r~fv~~L 152 (234) T 1hwx_A 81 QHSHQRTPCKGGIRYSTDVS--VDEVKALASLMTYKCAVVDVPFGGAKAGVKIN--PKNYTDE----DLEKITRRFTMEL 152 (234) T ss_dssp ECCCSSSSEEEEEEECTTCC--HHHHHHHHHHHHHHHHHTTCCCEEEEEEECCC--GGGSCHH----HHHHHHHHHHHHH T ss_pred EECCCCCCCCCCEECCCCCC--HHHHHHHHHHHHHHHHHCCCCCCCCCEEEECC--CCCCCHH----HHHHHHHHHHHHH T ss_conf 97798887756244468789--99999999998999986089987705588459--9899999----9999999999996 Q ss_pred HHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCH-HHHHHHHHHHHC-CCCCCC--HHCCCCC---CCCCCCCCCC Q ss_conf 87762568884028831030538986799817788832-689999999880-899850--1105699---9988431011 Q gi|254780662|r 855 LSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTAT-FSDTANILAQEA-KFWLDD--AFASGGS---MGYDHKKMGI 927 (1576) Q Consensus 855 LditDN~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~-fsD~An~ia~~~-gfwlgd--AFaSGgs---~GydHK~mGI 927 (1576) --- ++.+..+ =+-+||=||.. -+.|.-...... |..--. +..+|++ .|.|-..-. T Consensus 153 ~g~--~~~G~D~---------------dipapDm~t~~~em~wi~d~y~~~~g~~~~ta~gvvTGk~v~~GG~~~~~~~- 214 (234) T 1hwx_A 153 AKK--GFIGPGV---------------DVPAPNMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGLDLRTAA- 214 (234) T ss_dssp HHT--TCCBTTT---------------EEEECBTTBCHHHHHHHHHHHHTTGGGGCTTGGGGCSSCCGGGTCTCHHHHH- T ss_pred HCC--CCCCCCC---------------CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCHHHHH- T ss_conf 052--5678778---------------9882013546887758987556403877555554334785320899889999- Q ss_pred CHHHHHHHHHHHHHHCCCC Q ss_conf 4678999999999980899 Q gi|254780662|r 928 TARGAWETVKRHFREMDID 946 (1576) Q Consensus 928 TarGaw~~v~rhfrelg~D 946 (1576) --.|.|-|-|.+.|-|+- T Consensus 215 -~~~~~~~~~~~~~~~~~~ 232 (234) T 1hwx_A 215 -YVNAIEKVFRVYNEAGVT 232 (234) T ss_dssp -HHHHHHHHHHHHHHHTSC T ss_pred -HHHHHHHHHHHHHHCCCC T ss_conf -999999999999966875 No 16 >>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} (A:87-192) Probab=87.76 E-value=1.5 Score=21.41 Aligned_cols=80 Identities=13% Similarity=0.026 Sum_probs=50.5 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCCCHHHHHH Q ss_conf 88657999947877438999999999779912799846489998899737423677887663369999957999899999 Q gi|254780662|r 84 GISISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKITPEEAIE 163 (1576) Q Consensus 84 ~s~~tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~~~e~~~~ 163 (1576) ....-+|.+.++|.|=||..|+..|.++|.+|-.+..-+.....+ ..+..--.|.++++-..+....+ T Consensus 4 ~~~~~~i~v~g~DrpGiva~it~~la~~~~nI~~l~~~~~~~~~~------------~~~~~~f~m~~~~~~p~~~~~~~ 71 (106) T 1u8s_A 4 HAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKL------------HSEQNQFHIAISARVDSGCNLMQ 71 (106) T ss_dssp CSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------------------CEEEEEEEEEECTTSCHHH T ss_pred CCEEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC------------CCCCCEEEEEEEEECCCCCCHHH T ss_conf 751699999844706899999999997799666899995367766------------67785799999997599999999 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999999 Q gi|254780662|r 164 IKKQLIFIIEQL 175 (1576) Q Consensus 164 L~~~L~~VL~dV 175 (1576) |++++..+-.+. T Consensus 72 l~~~l~~l~~~l 83 (106) T 1u8s_A 72 LQEEFDALCTAL 83 (106) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999984 No 17 >>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} (A:85-195) Probab=86.78 E-value=1.7 Score=20.98 Aligned_cols=75 Identities=8% Similarity=-0.039 Sum_probs=49.5 Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCC-CHHHHHH Q ss_conf 865799994787743899999999977991279984648999889973742367788766336999995799-9899999 Q gi|254780662|r 85 ISISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKI-TPEEAIE 163 (1576) Q Consensus 85 s~~tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~-~~e~~~~ 163 (1576) ..+-+|+++..|.|=+|.-|+..|..+|.+|..+-+-++ .+. ....-+|.++++-. .+...++ T Consensus 7 ~~~~~it~~g~DrpGiva~it~~la~~g~nI~~~~~~~~---~~~-------------~~g~~~~~~~~~~~~~~~~~~~ 70 (111) T 2nyi_A 7 TREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETL---PAP-------------FAGFTLFRXGSRVAFPFPLYQE 70 (111) T ss_dssp EEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE---ECS-------------STTCEEEEEEEEEEEEGGGHHH T ss_pred CEEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEE---CCC-------------CCCCCEEEEEEEEECCCCCHHH T ss_conf 469999999429878999999999976957878777576---489-------------8886249999999679662799 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999999 Q gi|254780662|r 164 IKKQLIFIIEQL 175 (1576) Q Consensus 164 L~~~L~~VL~dV 175 (1576) |+++|..+-.+. T Consensus 71 l~~~L~~l~~~l 82 (111) T 2nyi_A 71 VVTALSRVEEEF 82 (111) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999985 No 18 >>3lou_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia mallei} (A:1-93) Probab=85.32 E-value=2 Score=20.42 Aligned_cols=76 Identities=7% Similarity=-0.025 Sum_probs=49.6 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCCCH-HHHH Q ss_conf 886579999478774389999999997799127998464899988997374236778876633699999579998-9999 Q gi|254780662|r 84 GISISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKITP-EEAI 162 (1576) Q Consensus 84 ~s~~tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~~~-e~~~ 162 (1576) ..++-+|.++++|.|=+|..|+..|..+|.+|.-+-+-+. ...+.-...+.++.+.... ...+ T Consensus 7 ~~~~~vitv~g~Dr~GiVa~vt~~la~~g~NI~~~~~~~~----------------~~~~~f~~~~~v~~~~~~~~~~~~ 70 (93) T 3lou_A 7 RPHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDD----------------DLSARFFVRCVFHATDDADALRVD 70 (93) T ss_dssp -CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEE----------------TTTTEEEEEEEEEECC----CCHH T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCC----------------CCCCEEEEEEEEECCCCCCCCCHH T ss_conf 9972899998999886499999999978999858745348----------------888807898999715885533889 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999999 Q gi|254780662|r 163 EIKKQLIFIIEQL 175 (1576) Q Consensus 163 ~L~~~L~~VL~dV 175 (1576) +|+++|..+-.+. T Consensus 71 ~l~~~l~~~~~~~ 83 (93) T 3lou_A 71 ALRREFEPIAERF 83 (93) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHC T ss_conf 9999888777651 No 19 >>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} (A:1-86) Probab=76.30 E-value=3.7 Score=18.03 Aligned_cols=69 Identities=14% Similarity=0.196 Sum_probs=47.5 Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCCCHHHHHHH Q ss_conf 86579999478774389999999997799127998464899988997374236778876633699999579998999999 Q gi|254780662|r 85 ISISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKITPEEAIEI 164 (1576) Q Consensus 85 s~~tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~~~e~~~~L 164 (1576) +.+.++.++++|+|=||.+|...+..+|.+|...-+-+. ++.-...++++++ +...++| T Consensus 4 ~~~~vitv~g~DrpGiva~is~~la~~g~nI~~~~~~~~------------------~~~f~~~~~~~~~---~~~~~~l 62 (86) T 1u8s_A 4 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMF------------------GKEFTLLMLISGS---PSNITRV 62 (86) T ss_dssp CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE------------------TTEEEEEEEEEEC---HHHHHHH T ss_pred CEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEE------------------CCCEEEEEEECCC---HHHHHHH T ss_conf 418999999269885999999999987995998588998------------------7962999985058---4566789 Q ss_pred HHHHHHHHHH Q ss_conf 9999999999 Q gi|254780662|r 165 KKQLIFIIEQ 174 (1576) Q Consensus 165 ~~~L~~VL~d 174 (1576) +++|..+.++ T Consensus 63 ~~~l~~~a~~ 72 (86) T 1u8s_A 63 ETTLPLLGQQ 72 (86) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999998765 No 20 >>1zpv_A ACT domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Streptococcus pneumoniae TIGR4} (A:) Probab=75.94 E-value=3.8 Score=17.95 Aligned_cols=68 Identities=12% Similarity=0.068 Sum_probs=49.3 Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCC-CHHHHHH Q ss_conf 865799994787743899999999977991279984648999889973742367788766336999995799-9899999 Q gi|254780662|r 85 ISISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKI-TPEEAIE 163 (1576) Q Consensus 85 s~~tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~-~~e~~~~ 163 (1576) +.+-+|.++++|+|=+|-.|+..|.++|.+|.-+-.-+. ++....+|.++++.. +.++ T Consensus 3 ~~~~vitv~g~DrpGiva~vt~~la~~g~NI~~~~~~~~------------------~~~~~~~~~i~~~~~~~~~~--- 61 (91) T 1zpv_A 3 AXKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVL------------------DEYFTXXAVVSSDEKQDFTY--- 61 (91) T ss_dssp CEEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEE------------------TTEEEEEEEEEESSCCCHHH--- T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEEE------------------CCCEEEEEEEECCCCCCHHH--- T ss_conf 735999999389887999999999987993998051893------------------79518999996699999999--- Q ss_pred HHHHHHHHHH Q ss_conf 9999999999 Q gi|254780662|r 164 IKKQLIFIIE 173 (1576) Q Consensus 164 L~~~L~~VL~ 173 (1576) |+++|+.+.+ T Consensus 62 l~~~L~~~~~ 71 (91) T 1zpv_A 62 LRNEFEAFGQ 71 (91) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999999999 No 21 >>1tlt_A Putative oxidoreductase (virulence factor MVIM homolog); structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} (A:1-126,A:262-319) Probab=64.26 E-value=6.3 Score=16.00 Aligned_cols=89 Identities=15% Similarity=0.178 Sum_probs=60.3 Q ss_pred CEEEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEEEC Q ss_conf 64599605886332443111276620899973943686777881379899999996689870038978717897089821 Q gi|254780662|r 951 PFTVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRKVLSKGGMIISRK 1030 (1576) Q Consensus 951 ~fTvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~lprssw~dyd~~liS~gGgv~~r~ 1030 (1576) .+-++|.|.++.-.+.+.+...+...++++| |||++-+..+.+.- +-.|.+.-..+++.--.||--+ T Consensus 7 RVgiIGlG~ia~~~~l~~L~~~~~~~ivgi~-------d~~~eka~~~~~~~------~i~~~~s~~~L~~~~DaV~I~t 73 (184) T 1tlt_A 7 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAW-------SPTRAKALPICESW------RIPYADSLSSLAASCDAVFVHS 73 (184) T ss_dssp EEEEECCSTHHHHTHHHHHHSCSSEEEEEEE-------CSSCTTHHHHHHHH------TCCBCSSHHHHHTTCSEEEECS T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCEEEEEE-------CCCHHHHHHHHHHH------CCCCCCHHHHHHCCCCCCCCCC T ss_conf 8999959999999999999838996899998-------79999999999981------9983481999840443112343 Q ss_pred CCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECC Q ss_conf 4442179899987098855428889998630365304433 Q gi|254780662|r 1031 EKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWF 1070 (1576) Q Consensus 1031 ~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~ 1070 (1576) ..-+-.+.+...|++.++.+.- T Consensus 74 ------------------p~~~H~e~a~~aL~~GkhVlvE 95 (184) T 1tlt_A 74 ------------------STASHFDVVSTLLNAGVHVCVD 95 (184) T ss_dssp ------------------CTTHHHHHHHHHHHTTCEEEEE T ss_pred ------------------CCCCCCCCCCCCCCCCHHHHHC T ss_conf ------------------2100012332233322233303 No 22 >>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, structural genomics, protein structure initiative, PSI-2; 2.04A {Streptococcus agalactiae COH1} (A:) Probab=59.15 E-value=7.1 Score=15.54 Aligned_cols=118 Identities=10% Similarity=-0.033 Sum_probs=80.4 Q ss_pred CCCEECCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHCCCCCC----C-------C-CCCCCCCCHH----HHH Q ss_conf 3103053898679981778883268999999988089985011056999----9-------8-8431011467----899 Q gi|254780662|r 870 DNTVCLDGNDPYFVVAADKGTATFSDTANILAQEAKFWLDDAFASGGSM----G-------Y-DHKKMGITAR----GAW 933 (1576) Q Consensus 870 ~~vv~~d~~d~ylvvaaDkgTa~fsD~An~ia~~~gfwlgdAFaSGgs~----G-------y-dHK~mGITar----Gaw 933 (1576) +.+++....+|.+++|.--....+.+..-...++.|+-+-.-+.-||.+ | + ++...+.+.+ -.- T Consensus 46 ~~~l~~~~~~p~v~lG~~q~~~~~~~~~~~~~~~~gi~vvrR~tGGgaV~hd~G~l~~~~i~~~~~~~~~~~~~~~~~~~ 125 (288) T 2p0l_A 46 EIILHIWPXTKTVILGXLDRELPHLELAKKEIISRGYEPVVRNFGGLAVVADEGILNFSLVIPDVFERKLSISDGYLIXV 125 (288) T ss_dssp CEEEEECCBSSEEEECTTGGGCTTHHHHHHHHHTTTCEEEECTTCCSCEEESTTEEEEEEEEESCC---CCHHHHHHHHH T ss_pred CCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHH T ss_conf 97899963899899898767681199999999986994899648986489779956999996266546789899999999 Q ss_pred HHHHHHHHHCCCCCCCCC---EEEEEECCCC---CCCCCCHHHCCCCCEEEEEECCCEEEECCC Q ss_conf 999999998089965486---4599605886---332443111276620899973943686777 Q gi|254780662|r 934 ETVKRHFREMDIDIQSTP---FTVAGVGDMS---GDVFGNGMLLSRKIQLVAAFDHSDIFIDPD 991 (1576) Q Consensus 934 ~~v~rhfrelg~D~q~~~---fTvvgiGdms---GDVfGNgmLls~~i~lvaafdh~hif~DP~ 991 (1576) +.+..-++++|++....+ +-+.+-+|.. .-+.|||+..+++.-+. |--|.+|+| T Consensus 126 ~~i~~~L~~lGi~a~~~~~~~~~~~~~~di~~~g~KI~G~aq~~~~~~~l~----~gsl~~~~d 185 (288) T 2p0l_A 126 DFIRSIFSDFYQPIEHFEVETSYCPGKFDLSINGKKFAGLAQRRIKNGIAV----SIYLSVCGD 185 (288) T ss_dssp HHHHHHTTTSCSCCEECCCTTSSSCCTTCEEETTEEEEEEEEEEETTEEEE----EEEEECSSC T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCEEECCEEEEEEEEEEECCEEEE----EEEEEEECC T ss_conf 999999997197517732556657886657888887899899983893999----999999788 No 23 >>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} (A:1-210) Probab=59.06 E-value=2.7 Score=19.30 Aligned_cols=72 Identities=10% Similarity=0.128 Sum_probs=42.5 Q ss_pred CCCE--EEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCEE Q ss_conf 4864--59960588633244311127662089997394368677788137989999999668987003897871789708 Q gi|254780662|r 949 STPF--TVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRKVLSKGGMI 1026 (1576) Q Consensus 949 ~~~f--TvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~lprssw~dyd~~liS~gGgv 1026 (1576) ..++ -++|.|.|.....-+.+...+...++|++ |++|+....+.++.......-..+.||+.-+-.++=-+ T Consensus 81 ~~~irvgiIG~G~~g~~~~~~~l~~~~~~~ivav~-------d~~~~~~~~~~~~~~~~~~~~~~~~d~~ell~~~~vD~ 153 (210) T 1h6d_A 81 DRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALV-------SGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDA 153 (210) T ss_dssp CCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEE-------CSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCE T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEE-------CCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCE T ss_conf 89717999948699999999999729898899998-------79999999999984899556755599999955999988 Q ss_pred E Q ss_conf 9 Q gi|254780662|r 1027 I 1027 (1576) Q Consensus 1027 ~ 1027 (1576) + T Consensus 154 V 154 (210) T 1h6d_A 154 V 154 (210) T ss_dssp E T ss_pred E T ss_conf 9 No 24 >>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} (A:) Probab=57.16 E-value=8 Score=15.05 Aligned_cols=118 Identities=14% Similarity=0.200 Sum_probs=77.3 Q ss_pred CCCEECCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHCCCCCCC-----------CCCCCCCCC--HHHHHHHH Q ss_conf 31030538986799817788832689999999880899850110569999-----------884310114--67899999 Q gi|254780662|r 870 DNTVCLDGNDPYFVVAADKGTATFSDTANILAQEAKFWLDDAFASGGSMG-----------YDHKKMGIT--ARGAWETV 936 (1576) Q Consensus 870 ~~vv~~d~~d~ylvvaaDkgTa~fsD~An~ia~~~gfwlgdAFaSGgs~G-----------ydHK~mGIT--arGaw~~v 936 (1576) +.+++....+|-+++|.--......+.. ...++|+-+-.-+.-||.+= ++.+...+. -+-.-+.+ T Consensus 33 ~~~l~~~~~~p~v~iG~~q~~~~ev~~~--~~~~~~i~vvrR~tGGg~v~hd~G~l~~s~i~~~~~~~~~~~y~~~~~~i 110 (262) T 2c8m_A 33 KPILRFYRHDRSVIIGYFQVAEEEVDLD--YMKKNGIMLARRYTGGGAVYHDLGDLNFSVVRSSDDMDITSMFRTMNEAV 110 (262) T ss_dssp CCEEEEECCSSEEEECTTCCHHHHSCHH--HHHHTTCEEEECSSCSCCEEECTTEEEEEEEEECSSCCHHHHHHHHHHHH T ss_pred CCEEEEEECCCEEEECCCCCHHHHHCHH--HHHHCCCCEEEEECCCCEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHH T ss_conf 9899998179979989789803554989--99867983899836996499889981899997058999999999999999 Q ss_pred HHHHHHCCCCCCCCCEEE---EE-----ECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCC Q ss_conf 999998089965486459---96-----0588633244311127662089997394368677788 Q gi|254780662|r 937 KRHFREMDIDIQSTPFTV---AG-----VGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPN 993 (1576) Q Consensus 937 ~rhfrelg~D~q~~~fTv---vg-----iGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD 993 (1576) ...|+++|++....+-.. ++ +-....-+.|+|+...++.-+. |--+.+|+|++ T Consensus 111 ~~~l~~~Gi~~~~~~~~~~~~~~~~~~di~~~gkKi~G~a~~~~~~~~l~----~~tll~~~d~~ 171 (262) T 2c8m_A 111 VNSLRILGLDARPGELNDVSIPVNKKTDIMAGEKKIMGAAGAMRKGAKLW----HAAMLVHTDLD 171 (262) T ss_dssp HHHHHHTTCCCEECCBCCTTSSSSBTTSEEETTEEEEEEEEEEETTEEEE----EEEEESSCCHH T ss_pred HHHHHHCCCEEEECCCCCEEEECCCCCCCCCCCEEEEEEEEEEECCEEEE----EEEECCCCCHH T ss_conf 99999739515885858807845677765568706875302543888999----86611479999 No 25 >>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} (A:1-76) Probab=55.20 E-value=3.4 Score=18.39 Aligned_cols=19 Identities=47% Similarity=0.672 Sum_probs=14.3 Q ss_pred EECCCCCCCHHHHHHHHHC Q ss_conf 8555103076789999973 Q gi|254780662|r 1108 GEGANLGLTQQARVVYSLN 1126 (1576) Q Consensus 1108 ~EG~NLg~Tq~~Rie~a~~ 1126 (1576) ||||.|-+||.|||.-++. T Consensus 46 geggeltltqlg~ia~~lg 64 (76) T 2bnm_A 46 GEGGELTLTQLGRIAHVLG 64 (76) T ss_dssp TTCTTCBHHHHHHHHHHTT T ss_pred CCCCCCHHHHHHHHHHHHC T ss_conf 9866743778999999979 No 26 >>1w91_A Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 2.2A {Geobacillus stearothermophilus} (A:199-326) Probab=50.34 E-value=10 Score=14.22 Aligned_cols=82 Identities=18% Similarity=0.113 Sum_probs=42.6 Q ss_pred HHHHHHHHHHCC--EEEEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECC-- Q ss_conf 999999997289--1881047998413777513632288741100385311254101897888761269818998448-- Q gi|254780662|r 209 ALTFLNWLNEDN--FQFMGMRYHPLVAGQKQVKLDHDMPTELGILRDSSIVVLGFDRVTPATRSFPEGNDFLIITKSN-- 284 (1576) Q Consensus 209 a~aFL~WL~ddh--FtFLGyReY~l~~~~~~~~L~~~~~sgLGILR~~~~~~~~~~~l~~~~r~~~~~~~~LivtKan-- 284 (1576) ..+||+.+...+ +=|+|+..|.-... .....+...+.+..++.....+..+...+.+....+.|++||-=+ T Consensus 10 ~~~fl~~~~~~~~p~DFig~n~Y~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~piyITEng~s 84 (128) T 1w91_A 10 ITDFLHFCAERRVPVDFVSRHAYTSKAP-----HKKTFEYYYQELEPPEDMLEQFKTVRALIRQSPFPHLPLHITEYNTS 84 (128) T ss_dssp HHHHHHHHHHTTCCCCEEEEEEECBCSC-----SEECSSCEECCBCCHHHHHHHHHHHHHHHHTSSSTTCCEEEEEEESC T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCC-----CCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCC T ss_conf 4899999983599777799720577877-----76532100333047899999999999999974899997665135577 Q ss_pred --CCCCCCCCCCC Q ss_conf --73310036776 Q gi|254780662|r 285 --VISVIYRRTYM 295 (1576) Q Consensus 285 --~rS~VHR~ayl 295 (1576) .+..+||..|+ T Consensus 85 ~~~~~~~~d~~y~ 97 (128) T 1w91_A 85 YSPINPVHDTALN 97 (128) T ss_dssp SCTTCGGGGSHHH T ss_pred CCCCCCCCCHHHH T ss_conf 7766434404777 No 27 >>1fiu_A Type II restriction enzyme ngomi; protein-DNA complex, double helix, restriction endonuclease, restriction-modifiction systems, hydrolase; HET: DNA; 1.60A {Neisseria gonorrhoeae} (A:) Probab=49.41 E-value=9.7 Score=14.33 Aligned_cols=63 Identities=22% Similarity=0.225 Sum_probs=27.4 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCHHHHH-----HHHHHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 778883268999999988089985011056999988431011467899-----999999998089965486459960588 Q gi|254780662|r 886 ADKGTATFSDTANILAQEAKFWLDDAFASGGSMGYDHKKMGITARGAW-----ETVKRHFREMDIDIQSTPFTVAGVGDM 960 (1576) Q Consensus 886 aDkgTa~fsD~An~ia~~~gfwlgdAFaSGgs~GydHK~mGITarGaw-----~~v~rhfrelg~D~q~~~fTvvgiGdm 960 (1576) ||+.--+=--||++|+..-| +-+..-|.-|-|+-... ++++.-|-++.+. ..-+..|..+|.- T Consensus 33 AD~s~~~S~~iA~~ia~~L~-----------a~tv~~~~agQt~G~~FE~~~~~Fi~~tf~~l~Hl-Rpg~W~V~~~~~r 100 (286) T 1fiu_A 33 ADGSNTRSFNIAKGIADLLH-----------SETVSERLPGQTSGNAFEAICSEFVQSAFEKLQHI-RPGDWNVKQVGSR 100 (286) T ss_dssp SCTTCHHHHHHHHHHHHHTT-----------CCCBCCCCCHHHHHHHHHHHHHHHHHHHHGGGTTT-SCSCEEEEECCTT T ss_pred CCCCCCHHHHHHHHHHHHHH-----------HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHCCH T ss_conf 77777123789999999985-----------66898764787772089999999999999886437-9886505451452 No 28 >>3ct8_A Protein BH2160, putative glyoxalase; NP_243026.1, glyoxalase/bleomycin resistance protein/dioxygenase superfamily, structural genomics; HET: UNL; 2.10A {Bacillus halodurans c-125} (A:1-79) Probab=48.13 E-value=7.3 Score=15.43 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=20.0 Q ss_pred CCHHHHHHHHHHHHHCCEEEEEEEEEEE Q ss_conf 1148899999999728918810479984 Q gi|254780662|r 204 EYAVEALTFLNWLNEDNFQFMGMRYHPL 231 (1576) Q Consensus 204 ee~~Ea~aFL~WL~ddhFtFLGyReY~l 231 (1576) .+++++++|..|| |..|||+.|.- T Consensus 29 sDLe~s~~fwgwL----L~~LGy~~~q~ 52 (79) T 3ct8_A 29 DHLEESIAFWDWL----LGELGYEDYQS 52 (79) T ss_dssp SCHHHHHHHHHHH----HHHTTCEEEEE T ss_pred CCHHHHHHHHHHH----HCCEEEEEEEC T ss_conf 9999999999997----48800586102 No 29 >>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} (A:) Probab=47.89 E-value=11 Score=13.92 Aligned_cols=47 Identities=19% Similarity=0.154 Sum_probs=35.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH Q ss_conf 78999999985007899999999750065179999999999984898824 Q gi|254780662|r 1175 MTSEVVELVLRNNYLQSLAISLESRKGMAMMWNFAQLMKFLGKEGALDRE 1224 (1576) Q Consensus 1175 mtdeV~~lVL~~n~~Q~~~ls~~~~~~~~~~~~~~rli~~Le~~g~Ldr~ 1224 (1576) +-++|.++|...+..- .|..+++=.--.+..+|+|+.||+.|.+... T Consensus 11 l~~~a~~~V~~~~~~S---~S~lQR~lrIGynRAariid~LE~~GiVsp~ 57 (73) T 2ve8_A 11 LYDEAVRFVTESRRAS---ISAVQRKLKIGYNRAARMIEAMEMAGVVTPM 57 (73) T ss_dssp THHHHHHHHHHHCCCC---HHHHHHHHTCCHHHHHHHHHHHHHTTSBCCC T ss_pred HHHHHHHHHHHHCCCC---HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC T ss_conf 9999999999818534---8999999701524999999999988767887 No 30 >>3id5_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransferase, RNA-binding, rRNA processing, transferase; HET: SAM; 4.01A {Sulfolobus solfataricus} (A:1-133) Probab=46.42 E-value=2.1 Score=20.28 Aligned_cols=27 Identities=22% Similarity=0.165 Sum_probs=15.5 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHH Q ss_conf 888999999999997698756435699 Q gi|254780662|r 604 VDRRDALVEAFKYIFHERVDNDSFNHL 630 (1576) Q Consensus 604 ~~~~~~~~~~~~~~~~~~~e~D~~n~L 630 (1576) ..+|+++++-....|-...+.|.++.| T Consensus 91 ~~lR~n~~~~~~e~~f~~s~~ey~~~l 117 (133) T 3id5_A 91 RIFRESLPKVAIDIKFASNEEDYYNFL 117 (133) T ss_dssp HHHHHTHHHHHHHTTSCSSHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 999987999999836679989999999 No 31 >>2v6z_M DNA polymerase epsilon subunit 2; DNA replication, DPOE2, transferase, AAA protein family; HET: DNA; NMR {Homo sapiens} (M:) Probab=45.52 E-value=7.8 Score=15.16 Aligned_cols=50 Identities=16% Similarity=0.100 Sum_probs=35.5 Q ss_pred CHHHHCCCHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHH Q ss_conf 04762688554620899999999974889888787999998722894886 Q gi|254780662|r 320 TRLVYSQRASKIPLLREKIVKVQNLLNFHPNSHSSRMLQNTLEFYPRDEL 369 (1576) Q Consensus 320 TSsAY~~sv~~IPiLRrKV~~VL~~sGf~p~SHsgK~L~~ILEtyPRDEL 369 (1576) +|+|....-.+..-||.+|-..++..||.-.+-.-|-|.++|+.++..|+ T Consensus 16 ~~~~~~~~~~~~~~LRk~IvsaFkL~Gl~Lr~EAs~YL~e~L~~~~~~Er 65 (99) T 2v6z_M 16 SSSARLQVDMAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELEL 65 (99) T ss_dssp ---------CCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHTTTSCTTTH T ss_pred CHHHHHHHHHCHHHHHHHHHHHHHHHCEEECHHHHHHHHHHHCCCCHHHH T ss_conf 32477762008899999999886120003538899999998078988899 No 32 >>2rk0_A Glyoxalase/bleomycin resistance protein/dioxygenase domain; 11002Z, glyoxylase, PSI-II, newyork structural genomix research consortium (nysgrc); 2.04A {Frankia SP} (A:68-136) Probab=45.35 E-value=12 Score=13.63 Aligned_cols=48 Identities=8% Similarity=0.088 Sum_probs=34.8 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC----CCCEEEEEECCCCCC Q ss_conf 999988431011467899999999998089965----486459960588633 Q gi|254780662|r 916 GSMGYDHKKMGITARGAWETVKRHFREMDIDIQ----STPFTVAGVGDMSGD 963 (1576) Q Consensus 916 gs~GydHK~mGITarGaw~~v~rhfrelg~D~q----~~~fTvvgiGdmsGD 963 (1576) |..|++|=+..+.++.....+..++++.|+.+. ...+..+-.=||+|- T Consensus 2 g~~gl~H~Af~v~s~~~l~~~~~~L~~~gv~~~~~~~~g~~~siyf~DPdG~ 53 (69) T 2rk0_A 2 TRPGLDHLSFSVESXTDLDVLEERLAKAGAAFTPTQELPFGWILAFRDADNI 53 (69) T ss_dssp TSSEEEEEEEEESSHHHHHHHHHHHHHHTCCBCCCEEETTEEEEEEECTTCC T ss_pred CCCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCEEEEEEECCCCC T ss_conf 6877315887502078999999999978986478661798499999999999 No 33 >>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A (A:1-125) Probab=45.32 E-value=7.7 Score=15.22 Aligned_cols=66 Identities=11% Similarity=0.062 Sum_probs=41.6 Q ss_pred CEEEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCEEE Q ss_conf 64599605886332443111276620899973943686777881379899999996689870038978717897089 Q gi|254780662|r 951 PFTVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRKVLSKGGMII 1027 (1576) Q Consensus 951 ~fTvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~lprssw~dyd~~liS~gGgv~ 1027 (1576) .+-++|.|.|+.....+.+...+...++|++ |++|+....+.+ -|..+ ...+||+.-+-+++=.++ T Consensus 4 ri~iiG~G~~g~~~~~~~~~~~~~~~lvai~-------d~~~~~~~~~~~---~~~~~-~~~~~~~~l~~~~~~d~v 69 (125) T 3i23_A 4 KXGFIGFGKSANRYHLPYVXIRETLEVKTIF-------DLHVNEKAAAPF---KEKGV-NFTADLNELLTDPEIELI 69 (125) T ss_dssp EEEEECCSHHHHHTTHHHHTTCTTEEEEEEE-------CTTCCHHHHHHH---HTTTC-EEESCTHHHHSCTTCCEE T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEE-------ECCHHHHHHHHH---HCCCC-CEECCHHHHHCCCCCCEE T ss_conf 5999989399999999999619897899999-------099999999985---54899-356999999659998889 No 34 >>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} (A:1-83) Probab=44.79 E-value=12 Score=13.56 Aligned_cols=68 Identities=16% Similarity=0.063 Sum_probs=47.5 Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCCCHHHHHHHHH Q ss_conf 57999947877438999999999779912799846489998899737423677887663369999957999899999999 Q gi|254780662|r 87 ISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKITPEEAIEIKK 166 (1576) Q Consensus 87 ~tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~~~e~~~~L~~ 166 (1576) ..-+++...|.|-++-.|+..+.++|..|..+-|-.. . .......+.+.+++.-.+-+++..+.+ T Consensus 4 ~v~l~v~~~Dr~G~L~~I~~iia~~~~nI~~i~~~~~-----~----------~~~~~~~~~~~~~v~v~~~~~l~~ii~ 68 (83) T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLI-----K----------HGEHEGKALIYFEIEGGDFEKILERVK 68 (83) T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEEC-----C----------SSTTTTEEEEEEEECSSCHHHHHHHHH T ss_pred CEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEE-----C----------CCCCCCCEEEEEEECCCCHHHHHHHHH T ss_conf 3358999758765599988899863897599987730-----3----------667788268999982899899999986 Q ss_pred HHH Q ss_conf 999 Q gi|254780662|r 167 QLI 169 (1576) Q Consensus 167 ~L~ 169 (1576) .|. T Consensus 69 ~L~ 71 (83) T 1y7p_A 69 TFD 71 (83) T ss_dssp TCT T ss_pred CCC T ss_conf 699 No 35 >>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} (A:) Probab=43.36 E-value=12 Score=13.39 Aligned_cols=127 Identities=11% Similarity=0.007 Sum_probs=80.7 Q ss_pred CCCEECCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHCCCCCC--CC--------CCCCCCCCHHHHH----HH Q ss_conf 3103053898679981778883268999999988089985011056999--98--------8431011467899----99 Q gi|254780662|r 870 DNTVCLDGNDPYFVVAADKGTATFSDTANILAQEAKFWLDDAFASGGSM--GY--------DHKKMGITARGAW----ET 935 (1576) Q Consensus 870 ~~vv~~d~~d~ylvvaaDkgTa~fsD~An~ia~~~gfwlgdAFaSGgs~--Gy--------dHK~mGITarGaw----~~ 935 (1576) +.+++.+..+|.+++|---......+.+-+..++.|+-+-.-+.-||.+ |- -.+.-+.+.+..- +. T Consensus 49 ~~~l~~~~~~p~v~iG~~q~~~~~~~~~~~~~~~~gi~vvrR~tGGg~V~hd~g~l~~s~i~~~~~~~~~~~~y~~~~~~ 128 (288) T 2p5i_A 49 PPTLRAWVHHNTVVLGIQDSRLPQIKAGIEALKGFQHDVIVRNSGGLAVVLDSGILNLSLVLKEEKGFSIDDGYELXYEL 128 (288) T ss_dssp CCEEEEECCSSEEEEEHHHHTSTTHHHHHHHHHHTTCEEEEESSCCCCEEECTTEEEEEEEEECCTTCCHHHHHHHHHHH T ss_pred CCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHH T ss_conf 98899995399899898777675478999999974991899638996488669963899997367667889999999999 Q ss_pred HHHHHHHCCCCCCCCC---EEEEEECC---CCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHH Q ss_conf 9999998089965486---45996058---86332443111276620899973943686777881379899999996 Q gi|254780662|r 936 VKRHFREMDIDIQSTP---FTVAGVGD---MSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFD 1006 (1576) Q Consensus 936 v~rhfrelg~D~q~~~---fTvvgiGd---msGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~ 1006 (1576) +.+.|+++|++....+ .-|.+-.| ...-+.|||+..+++.-+. |--|.+|+| ..+..+.|. T Consensus 129 i~~~L~~lGi~~~~~~~~~~~~~~~~di~~~gkKi~G~aq~~~~~~~l~----h~sllv~~d------~~~~~~~~~ 195 (288) T 2p5i_A 129 ICSXFQDHREQIEAREIVGSYCPGSYDLSIDGKKFAGISQRRIRGGVAV----QIYLCVSGS------GAERAKXIR 195 (288) T ss_dssp HHHHTC---CCCEECCCTTSSSCCTTCEEETTEEEEEEEEEEETTEEEE----EEEEECSSC------HHHHHHHHH T ss_pred HHHHHHHCCCCEEECCCCCCCCCCCCEEEECCEEEEEEEEEEECCEEEE----EEEEEEECC------HHHHHHHHH T ss_conf 9999997499607635556657775506778866999767898887999----999998579------999999972 No 36 >>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling, bifunctional enzyme; HET: NAD; 1.70A {Pseudomonas SP} (B:1-130,B:285-312) Probab=43.13 E-value=4 Score=17.74 Aligned_cols=36 Identities=14% Similarity=0.252 Sum_probs=29.1 Q ss_pred CEEEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCC Q ss_conf 6459960588633244311127662089997394368677788 Q gi|254780662|r 951 PFTVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPN 993 (1576) Q Consensus 951 ~fTvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD 993 (1576) .+-++|.|++.|.-+-+.+...++..++|.+ ||+|+ T Consensus 6 kVgIIG~G~~g~~~~~~~l~~~~~~eivai~-------d~~~~ 41 (158) T 1nvm_B 6 KVAIIGSGNIGTDLMIKVLRNAKYLEMGAMV-------GIDAA 41 (158) T ss_dssp EEEEECCSHHHHHHHHHHHHHCSSEEEEEEE-------CSCTT T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEE-------ECCCC T ss_conf 3999868799999999998459996899998-------16825 No 37 >>1jqo_A Phosphoenolpyruvate carboxylase; beta barrel, carbon dioxide fixation, lyase; 3.00A {Zea mays} (A:133-297,A:449-707) Probab=43.04 E-value=12 Score=13.64 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=14.0 Q ss_pred CEEEEEEECCCCCCCEEE Q ss_conf 657998405423304042 Q gi|254780662|r 773 EVEGVHLRCGKIARGGLR 790 (1576) Q Consensus 773 ~~eGvHlR~g~vARGGlR 790 (1576) .+.=||=|||.|.|||.- T Consensus 351 ~l~~FhGrGGsvgRGGgp 368 (424) T 1jqo_A 351 KLTLFHGRGGTVGRGGGP 368 (424) T ss_dssp EEEEEEECCSSGGGTCCC T ss_pred EEEEECCCCCCCCCCCCC T ss_conf 499970788888899994 No 38 >>2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein structure initiative; 2.60A {Escherichia coli O6} (X:118-207) Probab=42.97 E-value=12 Score=13.34 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=47.4 Q ss_pred HHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHCCCC Q ss_conf 2689999999880899850110569999884310114-678999999999980899 Q gi|254780662|r 892 TFSDTANILAQEAKFWLDDAFASGGSMGYDHKKMGIT-ARGAWETVKRHFREMDID 946 (1576) Q Consensus 892 ~fsD~An~ia~~~gfwlgdAFaSGgs~GydHK~mGIT-arGaw~~v~rhfrelg~D 946 (1576) |-.||...+=++||++.+-.|...-+..|+-..|=+- --.-|.++.|.+.|-||- T Consensus 13 tv~eIi~~vl~~~~~~~~~~~~~~l~~~~~~r~y~~Qy~ESD~~Fi~Rll~e~Gi~ 68 (90) T 2p5z_X 13 TVPQIVEKILRERHQMRGQDFVFNLKSEYPAREQVMQYGEDDLTFVSRLLSEVGIW 68 (90) T ss_dssp CHHHHHHHHHHTTTCCCSSSEEEECSSCCCCEEEEEECSCCHHHHHHHHHHHHTCE T ss_pred CHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCE T ss_conf 98999999998717544553356326778743013001465799999999976987 No 39 >>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* (A:183-372) Probab=41.59 E-value=13 Score=13.18 Aligned_cols=96 Identities=15% Similarity=0.131 Sum_probs=75.7 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEE Q ss_conf 898679981778883268999999988089985011056999988431-0114678999999999980899654864599 Q gi|254780662|r 877 GNDPYFVVAADKGTATFSDTANILAQEAKFWLDDAFASGGSMGYDHKK-MGITARGAWETVKRHFREMDIDIQSTPFTVA 955 (1576) Q Consensus 877 ~~d~ylvvaaDkgTa~fsD~An~ia~~~gfwlgdAFaSGgs~GydHK~-mGITarGaw~~v~rhfrelg~D~q~~~fTvv 955 (1576) ..-|.++++..=.++.-.+-.+..+...|.+....+++-|....+|.- +|....+...++++.+++-. .++ T Consensus 23 A~rPvii~G~~~~~~~a~~~l~~lae~~~iPv~~t~~~kg~~~~~hp~~~G~~g~~~~~~~~~~l~~aD--------lil 94 (190) T 2pgn_A 23 AKNPVILAGGGVARSGGSEALLKLAEMVGVPVVTTSTGAGVFPETHALAMGSAGFCGWKSANDMMAAAD--------FVL 94 (190) T ss_dssp CSSEEEEECHHHHHHTCHHHHHHHHHHHTCCEEECTTTTTSSCTTSTTEEEECSTTSCHHHHHHHHHCS--------EEE T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHCC--------CCC T ss_conf 343333456531234438999999998297476235578655413330224567655145666654022--------200 Q ss_pred EECCCCCCCCCCHHHCCCCCEEEEE Q ss_conf 6058863324431112766208999 Q gi|254780662|r 956 GVGDMSGDVFGNGMLLSRKIQLVAA 980 (1576) Q Consensus 956 giGdmsGDVfGNgmLls~~i~lvaa 980 (1576) .+|-.-.+.-..+...+.+.+++.. T Consensus 95 ~iG~~~~~~~~~~~~~~~~~~~i~i 119 (190) T 2pgn_A 95 VLGSRLSDWGIAQGYITKMPKFVHV 119 (190) T ss_dssp EESCCCCTTTTTTTTTCCCCSEEEE T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEC T ss_conf 1344334455300112356421210 No 40 >>2v8f_A Profilin-2, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus} PDB: 2v8c_A 2vk3_A* 1d1j_A* (A:) Probab=41.25 E-value=12 Score=13.57 Aligned_cols=58 Identities=28% Similarity=0.331 Sum_probs=33.0 Q ss_pred CCCCCCCHHHCCCC----CEEEEECC-CCCC-CCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEE-----ECCCCCC Q ss_conf 87003897871789----70898214-4421-79899987098855428889998630365304-----4338742 Q gi|254780662|r 1010 SSWQDFDRKVLSKG----GMIISRKE-KAVQ-LTPEAVAVIGISKQIATPSEIISAILMASVDL-----LWFGGIG 1074 (1576) Q Consensus 1010 ssw~dyd~~liS~g----Ggv~~r~~-k~i~-ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDL-----lw~gGiG 1074 (1576) |||++|=..|+..| +.|+..+. ++|= -|+ |..-...+|+|+. .++...-+- +|.||.- T Consensus 2 ssWq~yvd~L~~tg~v~~aAIig~dg~~~vWA~s~------g~~~~~~~~~e~~-~~~~~~~~~~~~~Gi~igG~K 70 (140) T 2v8f_A 2 AGWQSYVDNLMCDGCXQEAAIVGYCDAKYVWAATA------GGVFQSITPVEID-MIVGKDREGFFTNGLTLGAKK 70 (140) T ss_dssp CTTHHHHHHHHTTSCEEEEEEEECSSSCSEEEECT------TSSGGGCCHHHHH-HHHSSCSSHHHHHCEEETTEE T ss_pred CCHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECC------CCCCCCCCHHHHH-HHHHCCHHHHEECCEEECCEE T ss_conf 83789999761547646689996689944788779------9875765999999-987348044300577977808 No 41 >>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str} (A:) Probab=40.87 E-value=6.9 Score=15.64 Aligned_cols=33 Identities=33% Similarity=0.569 Sum_probs=19.8 Q ss_pred EECCCEEEECCCCCCCCCHHHHHHHHHCC-CCCCCCCCHHHCC Q ss_conf 97394368677788137989999999668-9870038978717 Q gi|254780662|r 980 AFDHSDIFIDPDPNSETTFDERKRLFDSP-SSSWQDFDRKVLS 1021 (1576) Q Consensus 980 afdh~hif~DP~PD~~~s~~Er~RLf~lp-rssw~dyd~~liS 1021 (1576) -|||-|||||=--|-+.- -| -|+.--||++|-+ T Consensus 33 PfDHPHvFlDMG~d~E~i---------CpYCSTLYry~~~L~~ 66 (87) T 2jz8_A 33 PFDHPHIFIDMGSTDEKI---------CPYCSTLYRYDPSLSY 66 (87) T ss_dssp SSSSSSCEEECTTCCEEC---------CTTTCCEEECCTTSCT T ss_pred CCCCCEEEEECCCCCEEE---------CCCCCCEEEECCCCCC T ss_conf 899988989759999798---------8899988784777776 No 42 >>3iol_B Glucagon; receptor-ligand complex, cell membrane, disulfide bond, G- protein coupled receptor, glycoprotein, membrane, polymorphism, receptor; HET: 10M; 2.10A {Homo sapiens} PDB: 1d0r_A (B:) Probab=40.37 E-value=14 Score=13.04 Aligned_cols=13 Identities=31% Similarity=0.654 Sum_probs=10.0 Q ss_pred HHHHHHHHHHHHC Q ss_conf 8899999999728 Q gi|254780662|r 207 VEALTFLNWLNED 219 (1576) Q Consensus 207 ~Ea~aFL~WL~dd 219 (1576) .-+.+|++||.++ T Consensus 17 ~aakdFv~WL~n~ 29 (31) T 3iol_B 17 QAAKEFIAWLVKG 29 (31) T ss_dssp HHHHHHHHHHHCC T ss_pred HHHHHHHHHHHCC T ss_conf 9999999999806 No 43 >>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} (A:1-125) Probab=39.53 E-value=7.1 Score=15.52 Aligned_cols=94 Identities=12% Similarity=0.012 Sum_probs=56.2 Q ss_pred EEEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCE-EEEEC Q ss_conf 45996058863324431112766208999739436867778813798999999966898700389787178970-89821 Q gi|254780662|r 952 FTVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRKVLSKGGM-IISRK 1030 (1576) Q Consensus 952 fTvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~lprssw~dyd~~liS~gGg-v~~r~ 1030 (1576) +-++|.|.|.....-..+...+...++|.+ |++|+.+.++++.- +-..+-+-..++++...- ++. T Consensus 5 vgiiG~G~~~~~~~~~~~~~~~~~~i~av~-------d~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~id~v~-- 70 (125) T 3f4l_A 5 CAFIGFGKSTTRYHLPYVLNRKDSWHVAHI-------FRRHAKPEEQAPIY-----SHIHFTSDLDEVLNDPDVKLVV-- 70 (125) T ss_dssp EEEECCSHHHHHHTHHHHTTCTTTEEEEEE-------ECSSCCGGGGSGGG-----TTCEEESCTHHHHTCTTEEEEE-- T ss_pred EEEEECCHHHHHHHHHHHHCCCCCEEEEEE-------ECCHHHHHHHHHHC-----CCCCEECCHHHHHCCCCCCEEE-- T ss_conf 999937799999999999738997599999-------89879999999875-----9983568999995699988998-- Q ss_pred CCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCC Q ss_conf 44421798999870988554288899986303653044338742 Q gi|254780662|r 1031 EKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIG 1074 (1576) Q Consensus 1031 ~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiG 1074 (1576) +....-.-.+++...+++-.+++.--.++ T Consensus 71 ---------------i~~~~~~h~~~~~~al~~G~~v~~EKP~~ 99 (125) T 3f4l_A 71 ---------------VCTHADSHFEYAKRALEAGKNVLVEKPFT 99 (125) T ss_dssp ---------------ECSCGGGHHHHHHHHHHTTCEEEECSSSC T ss_pred ---------------ECCCCHHCCCHHHHHHCCCHHHHCCCCCC T ss_conf ---------------50431000005677632102322143321 No 44 >>1r8s_E ARNO; protein transport/exchange factor; HET: GDP; 1.46A {Homo sapiens} (E:88-203) Probab=38.26 E-value=14 Score=12.79 Aligned_cols=61 Identities=15% Similarity=0.234 Sum_probs=48.5 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH--------CCHHHHHHHHHHHHCCCCH Q ss_conf 899982899999999999999998457999847899998883--------9989998889997708317 Q gi|254780662|r 1241 EVSLSRPEIAILLAYAKLKLSEQLLDSTLIDDPFFFSILLSY--------FPRQLSELYSEDIMNHQLR 1301 (1576) Q Consensus 1241 g~gltrpelavLlay~K~~l~~~l~~s~l~dd~~~~~~l~~y--------fP~~l~~~f~~~i~~H~Lr 1301 (1576) ......++.+-.|||+.+.|-.++-.+..-.---...+.... ||...-+..-+.|..+|++ T Consensus 40 p~~~~~~d~~~~L~~siimLnTdlHn~~~k~kmt~~~Fi~n~~~~~~~~~~~~~~L~~iY~~I~~~~~~ 108 (116) T 1r8s_E 40 PGVFQSTDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEPFK 108 (116) T ss_dssp TTSSSCHHHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHTTTTBTTBCCCHHHHHHHHHHHHHSCCC T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC T ss_conf 875788999999999999998762174236776999999987377777889999999999999818871 No 45 >>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} (A:1-84) Probab=37.95 E-value=15 Score=12.75 Aligned_cols=57 Identities=4% Similarity=-0.047 Sum_probs=43.1 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCCCHHH Q ss_conf 657999947877438999999999779912799846489998899737423677887663369999957999899 Q gi|254780662|r 86 SISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKITPEE 160 (1576) Q Consensus 86 ~~tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~~~e~ 160 (1576) .+-||.+.++|.|=+|..|+..|.++|.+|.-.-.-+. ++..--+|.++++..+.++ T Consensus 4 ~~~vltv~g~DrpGiva~vt~~la~~g~NI~~~~~~~~------------------~~~~~~~~~v~~~~~~~~~ 60 (84) T 2nyi_A 4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRXACL------------------GGDFAXIVLVSLNAKDGKL 60 (84) T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE------------------TTEEEEEEEEEESSSSSHH T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEE------------------ECCEEEEEEEECCCHHHHH T ss_conf 49999999269888999999999987998997561897------------------0756888763024304667 No 46 >>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} (A:1-72) Probab=37.42 E-value=15 Score=12.69 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=40.2 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHH Q ss_conf 9989999999999999988188889899999997-1479999999999875 Q gi|254780662|r 635 DLRVYEISVLRSYARYLRQASVTWSQNFIARVLS-KNPTISQLLFSLFRYR 684 (1576) Q Consensus 635 ~l~~r~v~~lra~~~yl~Q~~~~~s~~~i~~~l~-~~p~~~~~l~~~F~~r 684 (1576) .|+-||-.+|.+..+|..+.|+|-|..-|.+.+. +-|..++..+...+.+ T Consensus 3 ~LT~rq~~iL~~I~~~~~~~g~pps~rei~~~~g~~S~stV~~~l~~Le~~ 53 (72) T 1jhf_A 3 ALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARK 53 (72) T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHT T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHC T ss_conf 439999999999999999829897699999982999737899987513422 No 47 >>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} (A:1-127) Probab=35.99 E-value=15 Score=12.51 Aligned_cols=80 Identities=10% Similarity=0.022 Sum_probs=55.2 Q ss_pred CEEEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEEEC Q ss_conf 64599605886332443111276620899973943686777881379899999996689870038978717897089821 Q gi|254780662|r 951 PFTVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRKVLSKGGMIISRK 1030 (1576) Q Consensus 951 ~fTvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~lprssw~dyd~~liS~gGgv~~r~ 1030 (1576) .+-++|.|.|.....-+.|..+++..++|.+ |++ .++.+-|...-..+.|++.-+.++.--++... T Consensus 9 kvgiiG~G~~~~~~~~~~l~~~~~~~iv~v~-------d~~-------~~~~~~~~~~~~~~~~~~~~l~~~~vd~V~i~ 74 (127) T 3e82_A 9 NIALIGYGFVGKTFHAPLIRSVPGLNLAFVA-------SRD-------EEKVKRDLPDVTVIASPEAAVQHPDVDLVVIA 74 (127) T ss_dssp EEEEECCSHHHHHTHHHHHHTSTTEEEEEEE-------CSC-------HHHHHHHCTTSEEESCHHHHHTCTTCSEEEEC T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEEEE-------CCC-------HHHHHHHCCCCCEECCHHHHHCCCCCCEEEEE T ss_conf 4999978199999999999719896899998-------799-------99999647789647999999559999889993 Q ss_pred CCCCCCCHHHHHHC Q ss_conf 44421798999870 Q gi|254780662|r 1031 EKAVQLTPEAVAVI 1044 (1576) Q Consensus 1031 ~k~i~ls~~~~~~l 1044 (1576) .-.-.-.+.+..++ T Consensus 75 t~~~~h~~~~~~~~ 88 (127) T 3e82_A 75 SPNATHAPLARLAL 88 (127) T ss_dssp SCGGGHHHHHHHHH T ss_pred CCHHHHCCCCCCCC T ss_conf 31332001221123 No 48 >>3dnp_A Stress response protein YHAX; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.85A {Bacillus subtilis} (A:1-85,A:201-290) Probab=33.37 E-value=17 Score=12.19 Aligned_cols=71 Identities=14% Similarity=0.067 Sum_probs=39.1 Q ss_pred CCHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCC Q ss_conf 832689999999880899850110569999884310114678999999999980899654864599605886332 Q gi|254780662|r 890 TATFSDTANILAQEAKFWLDDAFASGGSMGYDHKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDV 964 (1576) Q Consensus 890 Ta~fsD~An~ia~~~gfwlgdAFaSGgs~GydHK~mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDV 964 (1576) |......+-.+....|..-.-....|+....+.+..-.-.-+--..++...+++|+++.+ |+.+||-..|+ T Consensus 46 Tgr~~~~~~~~l~~lgl~~~~i~~nGa~i~~~~~~~~~~~~~K~~~i~~l~~~~~~~~~~----~~~vGD~~nD~ 116 (175) T 3dnp_A 46 TNRHFRSAQKIAKSLKLDAKLITHSGAYIAEKIDAPFFEKVSKEAGLALVASELGLSXDD----VVAIGHQYDDL 116 (175) T ss_dssp CSSCHHHHHHHHHHTTCCSCEEEGGGTEEESSTTSCSEECCCHHHHHHHHHHHTTCCGGG----EEEEECSGGGH T ss_pred CCCCHHHHHHHHHHHCCCCCEECCCCEEEEECCCCEEEECCHHHHHHHHHHHHHCCCCCE----EEEEECCCCHH T ss_conf 999889999999980997745616864999457504310140768999999974646240----89993882429 No 49 >>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} (A:) Probab=32.76 E-value=17 Score=12.11 Aligned_cols=13 Identities=23% Similarity=0.652 Sum_probs=9.6 Q ss_pred HHHHHHHHHHHHC Q ss_conf 8899999999728 Q gi|254780662|r 207 VEALTFLNWLNED 219 (1576) Q Consensus 207 ~Ea~aFL~WL~dd 219 (1576) .-|.+|+.||.++ T Consensus 17 ~aakdFv~WL~~~ 29 (39) T 1jrj_A 17 EAVRLFIEWLKNG 29 (39) T ss_dssp HHHHHHHHHHHTT T ss_pred HHHHHHHHHHHCC T ss_conf 9999999999828 No 50 >>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens} (A:) Probab=32.70 E-value=17 Score=12.17 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=9.4 Q ss_pred HHHHHHHHHCCCCCCC Q ss_conf 9999999980899654 Q gi|254780662|r 934 ETVKRHFREMDIDIQS 949 (1576) Q Consensus 934 ~~v~rhfrelg~D~q~ 949 (1576) -+|++..+|+|||+.. T Consensus 20 PaaRklA~e~gidl~~ 35 (70) T 2coo_A 20 PAVRRLAMENNIKLSE 35 (70) T ss_dssp HHHHHHHHHHTCCGGG T ss_pred HHHHHHHHHCCCCHHH T ss_conf 9999999992998300 No 51 >>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A (C:) Probab=32.63 E-value=17 Score=12.10 Aligned_cols=14 Identities=29% Similarity=0.570 Sum_probs=10.0 Q ss_pred CHHHHHHHHHHHHH Q ss_conf 14889999999972 Q gi|254780662|r 205 YAVEALTFLNWLNE 218 (1576) Q Consensus 205 e~~Ea~aFL~WL~d 218 (1576) +...|.+|.+||.+ T Consensus 15 d~r~AqdFvqwLmn 28 (29) T 2g49_C 15 DSRRAQDFVQWLMN 28 (29) T ss_pred HHHHHHHHHHHHHC T ss_conf 99898999999862 No 52 >>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A (A:) Probab=31.80 E-value=18 Score=11.99 Aligned_cols=64 Identities=13% Similarity=0.084 Sum_probs=37.3 Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCCCHHHHHHHHH Q ss_conf 57999947877438999999999779912799846489998899737423677887663369999957999899999999 Q gi|254780662|r 87 ISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKITPEEAIEIKK 166 (1576) Q Consensus 87 ~tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~~~e~~~~L~~ 166 (1576) ..-+.|.+.|.|-++-.|+..|.+.++.|..+. +.++. ..+.+.+.++-.+.+.+..|.+ T Consensus 5 ~~~l~v~~~DrpGlL~~It~~la~~~inI~~i~-----~~~~~---------------~~~~~~~~v~v~d~~~l~~ii~ 64 (88) T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIV-----LNAKD---------------GIFTCNLMIFVKNTDKLTTLMD 64 (88) T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEE-----EEECS---------------SEEEEEEEEEESSHHHHHHHHH T ss_pred EEEEEEEEECCCCHHHHHHHHHHHCCCEEEEEE-----EEECC---------------CEEEEEEEEEECCHHHHHHHHH T ss_conf 999999996687889999999998798299999-----98269---------------9899999999999999999999 Q ss_pred HHHH Q ss_conf 9999 Q gi|254780662|r 167 QLIF 170 (1576) Q Consensus 167 ~L~~ 170 (1576) .|++ T Consensus 65 ~l~~ 68 (88) T 2ko1_A 65 KLRK 68 (88) T ss_dssp HHTT T ss_pred HHHC T ss_conf 9977 No 53 >>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+ and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia coli} (A:97-257,A:389-647) Probab=31.27 E-value=17 Score=12.10 Aligned_cols=17 Identities=41% Similarity=0.563 Sum_probs=13.3 Q ss_pred EEEEEEECCCCCCCEEE Q ss_conf 57998405423304042 Q gi|254780662|r 774 VEGVHLRCGKIARGGLR 790 (1576) Q Consensus 774 ~eGvHlR~g~vARGGlR 790 (1576) +.=||=|||.|.|||.. T Consensus 348 i~~FhGrGgsvgRGGgp 364 (420) T 1jqn_A 348 LTLFHGRGGSIGRGGAP 364 (420) T ss_dssp EEEEECSSTGGGSCHHH T ss_pred EEEEECCCCCCCCCCCC T ss_conf 79961788877889983 No 54 >>2olp_A Hemoglobin II; oxygen transport, hemoprotein, globins, oxygen storage/transport complex; HET: HEM; 1.93A {Lucina pectinata} (A:) Probab=30.62 E-value=18 Score=11.84 Aligned_cols=42 Identities=19% Similarity=0.197 Sum_probs=27.5 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH Q ss_conf 399899999999999999881888898999999971479999 Q gi|254780662|r 634 TDLRVYEISVLRSYARYLRQASVTWSQNFIARVLSKNPTISQ 675 (1576) Q Consensus 634 ~~l~~r~v~~lra~~~yl~Q~~~~~s~~~i~~~l~~~p~~~~ 675 (1576) .+|+.+|+.++|.-..-+.+-+..+......+-+..||++-. T Consensus 2 t~Ls~~q~~~i~~sW~~i~~~~~~~g~~~f~~lF~~~P~~~~ 43 (152) T 2olp_A 2 TTLTNPQKAAIRSSWSKFMDNGVSNGQGFYMDLFKAHPETLT 43 (152) T ss_dssp CCCCHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHCGGGGG T ss_pred CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHH T ss_conf 999999999999999998705888999999999998978888 No 55 >>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* (A:96-211,A:452-503) Probab=30.29 E-value=15 Score=12.61 Aligned_cols=10 Identities=40% Similarity=0.574 Sum_probs=5.1 Q ss_pred EEEEEECCCE Q ss_conf 0899973943 Q gi|254780662|r 976 QLVAAFDHSD 985 (1576) Q Consensus 976 ~lvaafdh~h 985 (1576) .|-.|.||+| T Consensus 156 ~~~~~~~~~~ 165 (168) T 1zr6_A 156 DLNSAVDHHH 165 (168) T ss_dssp ---------- T ss_pred HHHCCCCCCC T ss_conf 5423566344 No 56 >>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP dipeptidase 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A* (A:1-203,A:447-479) Probab=30.21 E-value=19 Score=11.79 Aligned_cols=149 Identities=13% Similarity=0.107 Sum_probs=84.6 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHC----CCCCEEEEEECCCEEE-ECCCCCCCCCHHHHHH Q ss_conf 6789999999999808996548645996058863324431112----7662089997394368-6777881379899999 Q gi|254780662|r 929 ARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGMLL----SRKIQLVAAFDHSDIF-IDPDPNSETTFDERKR 1003 (1576) Q Consensus 929 arGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgmLl----s~~i~lvaafdh~hif-~DP~PD~~~s~~Er~R 1003 (1576) -.-+-++++..|+++|.++....+.....=+++++..++.+.- ...-+.|...-|.++- .++ T Consensus 45 e~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~I~l~~H~DtVp~~~------------- 111 (236) T 2zog_A 45 IRRMMEVAAADVQRLGGSVELVDIGKQKLPDGSEIPLPPILLGKLGSDPQKKTVCIYGHLDVQPAAL------------- 111 (236) T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCCEEECTTSCEEECCCEEEEEECCCTTSCEEEEEEECCBCCCCG------------- T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCC------------- T ss_conf 9999999999999769959999457754666666788758999967899989899975764018988------------- Q ss_pred HHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHH------CCCCCEEECCCCCCCEE Q ss_conf 996689870038978717897089821444217989998709885542888999863------03653044338742111 Q gi|254780662|r 1004 LFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAI------LMASVDLLWFGGIGTYI 1077 (1576) Q Consensus 1004 Lf~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~i------L~a~vDLlw~gGiGTYv 1077 (1576) ...|..+.-.....||.++.|.+-+- ..+...--+.++++ +.-++-++++++ T Consensus 112 -----~~~~~~~p~~~~~~~~~~~g~Ga~D~------------k~gva~~l~a~~~L~~~~~~~~~~I~~~f~~~----- 169 (236) T 2zog_A 112 -----EDGWDSEPFTLVEREGKLYGRGSTDD------------KGPVAGWMNALEAYQKTGQEIPVNLRFCLEGM----- 169 (236) T ss_dssp -----GGTCSSCTTSCEEETTEEESTTTTTT------------HHHHHHHHHHHHHHHHTTCCCSSEEEEEEESC----- T ss_pred -----CCCCCCCCCCEEECCCCEEEECCCCC------------CCCHHHHHHHHHHHHHCCCCCCCCEEEEEECC----- T ss_conf -----65445577521662783783063356------------65664666788886410126898638986123----- Q ss_pred CCCCCCCCCCCCCC--CCCEECCCCCEEEEEEEECCCCCCC Q ss_conf 26898620015210--0000025883046899855510307 Q gi|254780662|r 1078 RAPRENNADIGDKG--NNILRVTADKVRAKVIGEGANLGLT 1116 (1576) Q Consensus 1078 ka~~e~~~~vgd~a--nd~~rv~g~~lr~kvi~EG~NLg~T 1116 (1576) .|.... |-++ .+.....+.+.-+-+++|++++|.. T Consensus 170 ---EE~G~~-Gs~~~v~~~~~~~~~~~~~~i~~ep~~~~~~ 206 (236) T 2zog_A 170 ---EESGSE-GLDELIFAQKDKFFKDVDYVCISDNYWLGAH 206 (236) T ss_dssp ---GGGTCT-THHHHHHHTTTTTTTTCCEEEECCCBCSCTT T ss_pred ---CHHHHH-HHHHHHHHHHHHHHCCCCCEEECCCCCCCCC T ss_conf ---112455-5899999978763123331120367656878 No 57 >>2bsz_A Arylamine N-acetyltransferase 1; acyltransferase, complete proteome; 2.0A {Rhizobium loti} (A:51-143,A:184-203) Probab=29.28 E-value=19 Score=11.67 Aligned_cols=32 Identities=9% Similarity=0.027 Sum_probs=18.2 Q ss_pred EEEECCCCCCCCCCCCEEEEEEECCCCCHHHH Q ss_conf 78724765558998865799994787743899 Q gi|254780662|r 71 CIDIREVEGINPSGISISIITVIVDNIPFLYQ 102 (1576) Q Consensus 71 ~~v~~p~~~~~gw~s~~tvi~iv~dD~PfLvD 102 (1576) -+++++.........+|-++-|-.|+..|||| T Consensus 46 arV~~~~~~~~~~~~~H~~liV~idg~~YLvD 77 (113) T 2bsz_A 46 ARVLWGQSEDAITARSHMLLRVELDGRTYIAD 77 (113) T ss_dssp EEECSSCCSSSSCCCCEEEEEEEETTEEEEEC T ss_pred EEEECCCCCCCCCCCCCEEEEEEECCEEEEEE T ss_conf 99963788889999878899999899249984 No 58 >>1xou_A ESPA; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} (A:) Probab=29.26 E-value=13 Score=13.10 Aligned_cols=31 Identities=6% Similarity=0.068 Sum_probs=15.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999977999999999999985 Q gi|254780662|r 166 KQLIFIIEQLKLVSQDSREMLASLEKMQKSF 196 (1576) Q Consensus 166 ~~L~~VL~dVr~aV~Dw~aM~~rl~~l~~~L 196 (1576) -.|+...+....+|.--.-|+..+.+....+ T Consensus 158 LqlQk~mQtyN~~vs~~sslqs~~~e~~~sI 188 (192) T 1xou_A 158 LEIQQXSNTLNLLTSARSDXQSLQYRTISGI 188 (192) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999989999888887541 No 59 >>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} (A:1-126) Probab=29.21 E-value=17 Score=12.04 Aligned_cols=59 Identities=8% Similarity=-0.021 Sum_probs=38.0 Q ss_pred CEEEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCC Q ss_conf 64599605886332443111276620899973943686777881379899999996689870038978717897 Q gi|254780662|r 951 PFTVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRKVLSKGG 1024 (1576) Q Consensus 951 ~fTvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~lprssw~dyd~~liS~gG 1024 (1576) .+-++|.|.+.-....+.+-.++++.++|.+ |++|+....+. +...|-+.-.+++...+ T Consensus 7 rv~iiG~G~~g~~~~~~~~~~~~~~~iv~v~-------d~~~~~~~~~~--------~~~~~~~~~~~l~~~~~ 65 (126) T 3fhl_A 7 KTGLAAFGMSGQVFHAPFISTNPHFELYKIV-------ERSKELSKERY--------PQASIVRSFKELTEDPE 65 (126) T ss_dssp EEEESCCSHHHHHTTHHHHHHCTTEEEEEEE-------CSSCCGGGTTC--------TTSEEESCSHHHHTCTT T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEEEE-------CCCHHHHHHHC--------CCCCCCCCHHHHHCCCC T ss_conf 8999927899999999999849793899998-------29999999867--------89984289999965999 No 60 >>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} (A:) Probab=28.56 E-value=20 Score=11.57 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=30.2 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 88898999999971479999999999875288877 Q gi|254780662|r 656 VTWSQNFIARVLSKNPTISQLLFSLFRYRFDPSLS 690 (1576) Q Consensus 656 ~~~s~~~i~~~l~~~p~~~~~l~~~F~~rFdP~~~ 690 (1576) .+.+.+.|-..|.+.|-.++.|+.-|..||-+-.+ T Consensus 17 ~~iTEe~VRryL~rkP~Tt~eLl~KFk~k~t~l~~ 51 (82) T 1nha_A 17 VQVTEDAVRRYLTRKPMTTKDLLKKFQTKKTGLSS 51 (82) T ss_dssp CCCCHHHHHHHHHHSCBCHHHHHHHTTSSCCSSCH T ss_pred CCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCC T ss_conf 77689999999971897399999999862467885 No 61 >>3d9w_A Putative acetyltransferase; arylamine N-acetyltransferase, NAT, X-RAY diffraction, acyltransferase; 2.70A {Nocardia farcinica} (A:60-216) Probab=28.41 E-value=11 Score=13.80 Aligned_cols=35 Identities=11% Similarity=0.121 Sum_probs=22.0 Q ss_pred CEEEEECCCCCCCCCCCCEEEEEEECCCCCHHHHH Q ss_conf 71787247655589988657999947877438999 Q gi|254780662|r 69 ACCIDIREVEGINPSGISISIITVIVDNIPFLYQS 103 (1576) Q Consensus 69 ~~~~v~~p~~~~~gw~s~~tvi~iv~dD~PfLvDS 103 (1576) ..-+|+++.....++...|.++.+-.|+.+||||- T Consensus 44 ~~arV~~~~~~~~~~~h~~l~V~v~~~~~~ylvDV 78 (157) T 3d9w_A 44 HTGRVTMGAGGLRPATHALLRVTTADDDRVWMCDV 78 (157) T ss_dssp EEEEECTTCCSCCCEEEEEEEEECSSCSCEEEECC T ss_pred EEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEEC T ss_conf 98999768888899765689999877996999825 No 62 >>2ija_A Arylamine N-acetyltransferase 1; arylamide acetylase 1, structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} PDB: 2pqt_A* 2pfr_A* (A:) Probab=28.37 E-value=19 Score=11.81 Aligned_cols=108 Identities=9% Similarity=0.048 Sum_probs=59.3 Q ss_pred HHHHHHHHHCCCHHHH-------HCCCHHHHHHHHHH-------------HHHHHHC--CCCCCCEEEEECCCCCCCCCC Q ss_conf 8899988631997897-------44998999999999-------------9999840--589887178724765558998 Q gi|254780662|r 27 SFSASAMFGEASIDDL-------EKYTPQMLALTSVV-------------SYDIFAG--WDHSSACCIDIREVEGINPSG 84 (1576) Q Consensus 27 ~~fa~~~f~~~~~eDl-------~~~~~~~l~~~~~~-------------~~~~~~~--r~~~~~~~~v~~p~~~~~gw~ 84 (1576) ..+.++.-.++|-|-+ ...++++++.-... ...+++. ....-..-+|.++.....++. T Consensus 30 ~~L~~ah~~~iPfeNld~~~~~~~~l~~~~l~~kiv~~~rGG~C~e~N~lf~~lL~~LGf~v~~~~arV~~~~~~~~~~~ 109 (295) T 2ija_A 30 TDILQHQIRAVPFENLNIHCGDAXDLGLEAIFDQVVRRNRGGWCLQVNHLLYWALTTIGFETTXLGGYVYSTPAKKYSTG 109 (295) T ss_dssp HHHHHHHHHHSCEECTTGGGTCCCCCSHHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEECSS T ss_pred HHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCC T ss_conf 99999984438806714650998668989999999864777254536799999999869907999899970788889998 Q ss_pred CCEEEEEEECCCCCHHHHHHHHH-------HHHCCCCEEEEECCEEEEEECCCCCEE Q ss_conf 86579999478774389999999-------997799127998464899988997374 Q gi|254780662|r 85 ISISIITVIVDNIPFLYQSIIGE-------IVARCRNLTMAVHPVFTKDKNCDWQLY 134 (1576) Q Consensus 85 s~~tvi~iv~dD~PfLvDSv~~~-------l~~~~~~i~~~~HPvl~V~RD~~G~L~ 134 (1576) .+|.++-|-.|+.+||||-=-+. |.-..-.++...+..+.+.++..|... T Consensus 110 ~~H~~l~V~~~~~~ylvDvGfG~~~~~~~Pl~l~~~~~~~~~~~~~Rl~~~~~~~~~ 166 (295) T 2ija_A 110 XIHLLLQVTIDGRNYIVDAGSGRSYQXWQPLELISGKDQPQVPCVFRLTEENGFWYL 166 (295) T ss_dssp CCEEEEEEEETTEEEEECSCCCGGGCCSSCEECCTTCEEECSSCEEEEEEETTEEEE T ss_pred CCEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEECCCEEE T ss_conf 752899999799159984356777674777226899738448944887884684057 No 63 >>1o08_A Beta-phosphoglucomutase; haloacid dehalogenase superfamily, phosphotransferase, pentavalent phosphate intermediate, isomerase; HET: G16; 1.20A {Lactococcus lactis} (A:14-90) Probab=27.94 E-value=20 Score=11.49 Aligned_cols=50 Identities=10% Similarity=0.040 Sum_probs=31.7 Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 9999999999881888898999999971479999999999875288877520 Q gi|254780662|r 642 SVLRSYARYLRQASVTWSQNFIARVLSKNPTISQLLFSLFRYRFDPSLSDQE 693 (1576) Q Consensus 642 ~~lra~~~yl~Q~~~~~s~~~i~~~l~~~p~~~~~l~~~F~~rFdP~~~~~~ 693 (1576) .-.+|+.+.+.+.|++||.......+.--|. ..+++.+-.++.+..+..+ T Consensus 6 lH~~Aw~~~~~~~g~~~~~~~~~~~~~G~~~--~~~~~~i~~~~g~~~~~ee 55 (77) T 1o08_A 6 YHFRAWKALAEEIGINGVDRQFNEQLKGVSR--EDSLQKILDLADKKVSAEE 55 (77) T ss_dssp HHHHHHHHHHHHTTCCCCCHHHHTTTTTCCH--HHHHHHHHTTSSSCCCHHH T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCCH--HHHHHHHHHHCCCCCCHHH T ss_conf 9999999999985999886999999749867--8888888763034567999 No 64 >>1fx3_A SECB, protein-export protein SECB; protein trasnport, translocation, transport protein; 2.50A {Haemophilus influenzae} (A:) Probab=27.67 E-value=20 Score=11.45 Aligned_cols=42 Identities=24% Similarity=0.207 Sum_probs=31.1 Q ss_pred EEEEEEEEEEECHHH-----------HCCCHHHCCHHHHHHHHHHHHCCCCCC Q ss_conf 877878852100476-----------268855462089999999997488988 Q gi|254780662|r 309 LIGELHVVGFFTRLV-----------YSQRASKIPLLREKIVKVQNLLNFHPN 350 (1576) Q Consensus 309 viGE~RFlGLFTSsA-----------Y~~sv~~IPiLRrKV~~VL~~sGf~p~ 350 (1576) .+.|.-..|+|+-.- .+....=-|++|+-|..+..++||+|= T Consensus 83 F~iev~~~GiF~i~~~~~e~~~~~L~i~~p~iLfPy~Re~Is~lt~~~gfpPl 135 (169) T 1fx3_A 83 FICEVKQAGVFTISGLEDVQMAHCLTSQCPNMLFPYARELVSNLVNRGTFPAL 135 (169) T ss_dssp CEEEEEEEEEEEEESCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTCCCC T ss_pred EEEEEEEEEEEEECCCCCHHHHCCHHHCCHHHHCHHHHHHHHHHHHHCCCCCC T ss_conf 88862389999751466022201032237588775899999999984799985 No 65 >>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium LT2} (A:1-149) Probab=27.43 E-value=21 Score=11.42 Aligned_cols=99 Identities=11% Similarity=0.144 Sum_probs=58.5 Q ss_pred CCEEEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEEE Q ss_conf 86459960588633244311127662089997394368677788137989999999668987003897871789708982 Q gi|254780662|r 950 TPFTVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRKVLSKGGMIISR 1029 (1576) Q Consensus 950 ~~fTvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~lprssw~dyd~~liS~gGgv~~r 1029 (1576) =.+-++|.|.+.....-.-+..+++..+++++ ||+|+-+..+.++ |..+-..+.||+.-+-..+-.++-- T Consensus 24 ~ri~iiG~G~~g~~~~~~~~~~~~~~~i~~i~-------~~~~~~a~~~~~~---~~~~~~~~~~~~~~l~~~~iD~V~i 93 (149) T 3ec7_A 24 LKAGIVGIGXIGSDHLRRLANTVSGVEVVAVC-------DIVAGRAQAALDK---YAIEAKDYNDYHDLINDKDVEVVII 93 (149) T ss_dssp EEEEEECCSHHHHHHHHHHHHTCTTEEEEEEE-------CSSTTHHHHHHHH---HTCCCEEESSHHHHHHCTTCCEEEE T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCCEEEEEE-------CCCHHHHHHHHHH---HCCCCCCCCCHHHHHCCCCCCEEEE T ss_conf 14999998099999999998469997899997-------7999999999998---2999742398999963889888974 Q ss_pred CCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCC Q ss_conf 1444217989998709885542888999863036530443387421 Q gi|254780662|r 1030 KEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGT 1075 (1576) Q Consensus 1030 ~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGT 1075 (1576) .. ..-.-.+.+...+++-.++|.--.+++ T Consensus 94 ~t-----------------p~~~h~~~~~~~l~~g~~V~~EKP~~~ 122 (149) T 3ec7_A 94 TA-----------------SNEAHADVAVAALNANKYVFCEKPLAV 122 (149) T ss_dssp CS-----------------CGGGHHHHHHHHHHTTCEEEEESSSCS T ss_pred CC-----------------CCCCCCHHHHHCCCCCCHHHCCCCHHH T ss_conf 14-----------------222200111100243301011431145 No 66 >>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* (A:150-330) Probab=27.08 E-value=21 Score=11.37 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=14.0 Q ss_pred CCCEEEEEEECCCCCCCEEE Q ss_conf 38657998405423304042 Q gi|254780662|r 771 GVEVEGVHLRCGKIARGGLR 790 (1576) Q Consensus 771 sp~~eGvHlR~g~vARGGlR 790 (1576) +..+-|||+|.|+-..++-. T Consensus 19 ~~~~igvHIRrgD~~~~~~~ 38 (181) T 2hhc_A 19 GHSIIGVHVRHGNGEDIMEH 38 (181) T ss_dssp TSEEEEEEECC--------- T ss_pred CCCEEEEEEECCCCCCCCCC T ss_conf 46637999966775445445 No 67 >>2o7s_A DHQ-SDH, bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase; NADPH, dehydroshikimate, bifunctional enzyme, oxidoreductase; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* (A:334-523) Probab=26.81 E-value=13 Score=13.12 Aligned_cols=42 Identities=12% Similarity=0.006 Sum_probs=32.1 Q ss_pred HHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCC Q ss_conf 999999999808996548645996058863324431112766 Q gi|254780662|r 933 WETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGMLLSRK 974 (1576) Q Consensus 933 w~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgmLls~~ 974 (1576) |..+.+-+++.+.+.+...+-|+|.|+|+.-+.-+-.-..-+ T Consensus 15 ~~g~~~~l~~~~~~~~~k~vlviGaG~~~~~~~~~L~~~g~~ 56 (190) T 2o7s_A 15 SSGDPSSVPSSSSPLASKTVVVIGAGGAGKALAYGAKEKGAK 56 (190) T ss_dssp ------------------CEEEECCSHHHHHHHHHHHHHCC- T ss_pred CCCCCHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCE T ss_conf 113301210354147778999863266102002125535845 No 68 >>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} (I:) Probab=26.70 E-value=21 Score=11.32 Aligned_cols=16 Identities=31% Similarity=0.490 Sum_probs=10.2 Q ss_pred HHHHHHHHHCCCCCCC Q ss_conf 9999999980899654 Q gi|254780662|r 934 ETVKRHFREMDIDIQS 949 (1576) Q Consensus 934 ~~v~rhfrelg~D~q~ 949 (1576) -+|++..+|+|||+.. T Consensus 11 P~aRklA~e~gidl~~ 26 (49) T 1w85_I 11 PSVRKYAREKGVDIRL 26 (49) T ss_dssp HHHHHHHHHTTCCTTT T ss_pred HHHHHHHHHCCCCHHH T ss_conf 9999999994998888 No 69 >>2qva_A GM27569P; translin, D. melanogaster, DNA binding protein; 3.40A {Drosophila melanogaster} PDB: 2qrx_A (A:) Probab=26.58 E-value=21 Score=11.30 Aligned_cols=34 Identities=15% Similarity=0.046 Sum_probs=20.9 Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999872887887899999999999999999999 Q gi|254780662|r 1488 LLSVAHNVVVDDHYENLALSAGLDWMYSARREMI 1521 (1576) Q Consensus 1488 l~~~i~~l~~~~~W~~lAr~al~ddl~~~~r~lt 1521 (1576) +|-+++.+..+|.=...-...+..++|.....|. T Consensus 165 ~R~ain~v~~gd~~~~~~i~~f~~~ly~~f~~l~ 198 (247) T 2qva_A 165 SRFATNSVTMGDYERSLNISHFIGDLNTGFRLLN 198 (247) T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9999998623666789999999999999998527 No 70 >>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K (K:) Probab=26.23 E-value=21 Score=11.25 Aligned_cols=16 Identities=6% Similarity=0.229 Sum_probs=9.2 Q ss_pred HHHHHHHHHCCCCCCC Q ss_conf 9999999980899654 Q gi|254780662|r 934 ETVKRHFREMDIDIQS 949 (1576) Q Consensus 934 ~~v~rhfrelg~D~q~ 949 (1576) -+|++..+|+|||+.. T Consensus 14 P~aRklA~e~gidl~~ 29 (64) T 2f60_K 14 PAARNILEKHSLDASQ 29 (64) T ss_dssp HHHHHHHHHTTCCGGG T ss_pred HHHHHHHHHCCCCHHH T ss_conf 9999999993998878 No 71 >>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} (A:1138-1255) Probab=25.73 E-value=15 Score=12.72 Aligned_cols=75 Identities=19% Similarity=0.224 Sum_probs=35.7 Q ss_pred CCEEEEEECCCEEEECCCCCC---CCCHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCC Q ss_conf 620899973943686777881---37989999999668987003897871789708982144421798999870988554 Q gi|254780662|r 974 KIQLVAAFDHSDIFIDPDPNS---ETTFDERKRLFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQI 1050 (1576) Q Consensus 974 ~i~lvaafdh~hif~DP~PD~---~~s~~Er~RLf~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~ 1050 (1576) |+.|--......|++||+|.. +.+..=-.--|+.|.-.- .+++..+|+==- +|.|..++ ....- T Consensus 6 ~TTL~~vt~~teIyYDPdp~~TvIeeD~e~V~~y~e~pDe~~-~~~~~~~SpWlL-------RieLdr~~-----m~dK~ 72 (118) T 3h0g_A 6 HTTLSTVTSATEIHYDPDPQDTVIEEDKDFVEAFFAIPDEEV-EENLYKQSPWLL-------RLELDRAK-----MLDKK 72 (118) T ss_dssp CCSSCSCCSCEEEECCCSTTCCCCSSSCSHHHHHHHTTCSST-TCSSCSCCCCEE-------EEECCTTS-----STTTT T ss_pred EEEEEEEECCEEEEECCCCCCEEEEEECCEEEEEEEECCCEE-EEEECCCCCEEE-------EEEECHHH-----CCCCC T ss_conf 421066621318998179886799960553888875234133-210002576169-------99843100-----35766 Q ss_pred CCHHHHHHHHC Q ss_conf 28889998630 Q gi|254780662|r 1051 ATPSEIISAIL 1061 (1576) Q Consensus 1051 ~~p~eli~~iL 1061 (1576) ++-.+....|- T Consensus 73 L~m~~Ia~~I~ 83 (118) T 3h0g_A 73 LSMSDVAGKIA 83 (118) T ss_dssp CCHHHHTTSGG T ss_pred CCEEECCCHHH T ss_conf 31110320354 No 72 >>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} (A:111-270) Probab=25.61 E-value=22 Score=11.17 Aligned_cols=61 Identities=10% Similarity=0.053 Sum_probs=38.2 Q ss_pred HHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHH Q ss_conf 999999999808996548645996058863324431112766208999739436867778813798999999 Q gi|254780662|r 933 WETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRL 1004 (1576) Q Consensus 933 w~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RL 1004 (1576) |.....-+++.+.+++...+-|+|.|+|+.-|.-. |.+...+-|. .-+++.+..++++... T Consensus 2 ~~g~~~~l~~~~~~~~~k~vLViGaGg~~~~v~~~--L~~~g~~~I~---------~r~~~~a~~la~~~~~ 62 (160) T 1nvt_A 2 GIGARMALEEEIGRVKDKNIVIYGAGGAARAVAFE--LAKDNNIIIA---------NRTVEKAEALAKEIAE 62 (160) T ss_dssp HHHHHHHHHHHHCCCCSCEEEEECCSHHHHHHHHH--HTSSSEEEEE---------CSSHHHHHHHHHHHHH T ss_pred EEEEEEEHHHCCCCCCCCEEEEECCHHHHHHHHHH--HHCCCEEEEE---------ECCHHHHHHHHHHHHH T ss_conf 20000001110355678759997523889999999--8508869999---------3888999999999998 No 73 >>1ou9_A Stringent starvation protein B homolog; SSRA peptide-binding protein, homodimer, transport protein; 1.80A {Haemophilus influenzae} (A:) Probab=25.38 E-value=22 Score=11.13 Aligned_cols=15 Identities=20% Similarity=0.656 Sum_probs=11.5 Q ss_pred HHHHHHHHHHCCEEE Q ss_conf 999999997289188 Q gi|254780662|r 209 ALTFLNWLNEDNFQF 223 (1576) Q Consensus 209 a~aFL~WL~ddhFtF 223 (1576) ..++++|+.|+.||+ T Consensus 13 iRa~y~w~~dn~~tP 27 (129) T 1ou9_A 13 LRAYYDWLVDNSFTP 27 (129) T ss_dssp HHHHHHHHHHTTCCE T ss_pred HHHHHHHHHHCCCCC T ss_conf 999999998788986 No 74 >>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckstrin homology domain, coiled coil, guanine-nucleotide releasing factor; HET: 4IP PGE PE5; 1.90A {Mus musculus} (A:90-203,A:330-347) Probab=25.12 E-value=22 Score=11.10 Aligned_cols=63 Identities=17% Similarity=0.270 Sum_probs=50.9 Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH--------HHCCHHHHHHHHHHHHCCCCH Q ss_conf 778999828999999999999999984579998478999988--------839989998889997708317 Q gi|254780662|r 1239 REEVSLSRPEIAILLAYAKLKLSEQLLDSTLIDDPFFFSILL--------SYFPRQLSELYSEDIMNHQLR 1301 (1576) Q Consensus 1239 ~~g~gltrpelavLlay~K~~l~~~l~~s~l~dd~~~~~~l~--------~yfP~~l~~~f~~~i~~H~Lr 1301 (1576) ........++.+..|||+-+.|-.++-.+.+..---+..+.. .-||..+-+..-+.|..+|+. T Consensus 38 ~Np~~~~s~D~~y~LaysiimLnTDlHn~~vk~kMt~~~Fikn~r~~~~~~~~~~e~L~~iYd~I~~~e~~ 108 (132) T 2r09_A 38 CNPGVFQSTDTCYVLSFAIIXLNTSLHNHNVRDKPTAERFITXNRGINEGGDLPEELLRNLYESIKNEPFK 108 (132) T ss_dssp HSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHTTTTBTTBCCCHHHHHHHHHHHHHSCCC T ss_pred HCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCC T ss_conf 59886788783553999999986650033456788899999972377887888999999999998626653 No 75 >>2vfm_A Bifunctional tail protein; P22 tailspike protein, salmonella bacteriophage P22, protein folding, protein stability; 1.50A {Enterobacteria phage P22} PDB: 2vfp_A 2vfo_A 2vfq_A 2vfn_A 1tsp_A 1qrb_A 1qq1_A 1qrc_A 1tyu_A* 1tyv_A 1tyw_A* 1tyx_A* 1qa2_A 1clw_A 1qa3_A 1qa1_A (A:16-92,A:137-441) Probab=25.02 E-value=14 Score=12.77 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=9.1 Q ss_pred EECCCEEEECCCCCCCCC Q ss_conf 973943686777881379 Q gi|254780662|r 980 AFDHSDIFIDPDPNSETT 997 (1576) Q Consensus 980 afdh~hif~DP~PD~~~s 997 (1576) ..|+-+.=-||+-.|+.+ T Consensus 224 VWDGFDLGaD~~m~pE~D 241 (382) T 2vfm_A 224 VWDGFDLGADTDMNPELD 241 (382) T ss_dssp SSCSEEECCSCSSSCCSC T ss_pred CCCCCCCCCCCCCCCCCC T ss_conf 113533568889788889 No 76 >>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase, structural genomics; HET: MSE; 1.90A {Methylobacillus flagellatus KT} (A:230-332) Probab=24.51 E-value=23 Score=11.01 Aligned_cols=22 Identities=18% Similarity=0.588 Sum_probs=12.2 Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEE Q ss_conf 999999999980899654864599 Q gi|254780662|r 932 AWETVKRHFREMDIDIQSTPFTVA 955 (1576) Q Consensus 932 aw~~v~rhfrelg~D~q~~~fTvv 955 (1576) ...-+++-|+|-||+ .+||-+| T Consensus 32 vL~kir~KY~eYGI~--ekPfVvV 53 (103) T 3k1t_A 32 LLAKIRRKYAEYGVK--QEPFVIV 53 (103) T ss_dssp HHHHHHHHHHHHTCC--SCCCEEE T ss_pred HHHHHHHHHHHCCCC--CCCEEEE T ss_conf 999999999971999--8966999 No 77 >>1ou8_A Stringent starvation protein B homolog; peptide-binding pocket, protein-peptide complex, homodimer, transport protein; 1.60A {Haemophilus influenzae} (A:) Probab=24.20 E-value=23 Score=10.96 Aligned_cols=15 Identities=20% Similarity=0.656 Sum_probs=12.4 Q ss_pred HHHHHHHHHHCCEEE Q ss_conf 999999997289188 Q gi|254780662|r 209 ALTFLNWLNEDNFQF 223 (1576) Q Consensus 209 a~aFL~WL~ddhFtF 223 (1576) ..++++|+.|+.+|+ T Consensus 13 ira~y~w~~dn~~tP 27 (111) T 1ou8_A 13 LRAYYDWLVDNSFTP 27 (111) T ss_dssp HHHHHHHHHHTTCCE T ss_pred HHHHHHHHHHCCCCC T ss_conf 999999998689986 No 78 >>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} (A:1-79) Probab=23.77 E-value=24 Score=10.90 Aligned_cols=65 Identities=17% Similarity=0.026 Sum_probs=40.8 Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCCCHHHHHHHHH Q ss_conf 57999947877438999999999779912799846489998899737423677887663369999957999899999999 Q gi|254780662|r 87 ISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKITPEEAIEIKK 166 (1576) Q Consensus 87 ~tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~~~e~~~~L~~ 166 (1576) +| +.+...|.|=++-.|+..+.++|+.|..+. +.+.++|. .-+.+.+...+.+++..+.+ T Consensus 4 ~~-i~i~~~d~pGvLa~It~v~~~~~vNI~~~~-----~~~~~~~~--------------~~~~~~~~~~~~~~l~~i~~ 63 (79) T 2f1f_A 4 RI-LSVLLENESGALSRVIGLFSQRGYNIESLT-----VAPTDDPT--------------LSRMTIQTVGDEKVLEQIEK 63 (79) T ss_dssp EE-EEEEEECCTTHHHHHHHHHHTTTCCCSEEE-----EEECSCSS--------------EEEEEEEEESCHHHHHHHHH T ss_pred EE-EEEEEECCCCHHHHHHHHHHCCCCCEEEEE-----EECCCCCC--------------EEEEEEEEECCHHHHHHHHH T ss_conf 99-999997786799999999860675556888-----60336897--------------68999998569899999999 Q ss_pred HHHHH Q ss_conf 99999 Q gi|254780662|r 167 QLIFI 171 (1576) Q Consensus 167 ~L~~V 171 (1576) .|+++ T Consensus 64 ~l~~i 68 (79) T 2f1f_A 64 QLHKL 68 (79) T ss_dssp HHHHS T ss_pred HHHCC T ss_conf 99617 No 79 >>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus HB8} (C:) Probab=23.52 E-value=24 Score=10.86 Aligned_cols=21 Identities=29% Similarity=0.688 Sum_probs=13.1 Q ss_pred HHHHHHHHHCCCCCCCCCEEEEEEC Q ss_conf 9999999980899654864599605 Q gi|254780662|r 934 ETVKRHFREMDIDIQSTPFTVAGVG 958 (1576) Q Consensus 934 ~~v~rhfrelg~D~q~~~fTvvgiG 958 (1576) -+|++.-+|+|+|+.. |.|+| T Consensus 4 P~arklA~e~gidl~~----v~GTG 24 (40) T 2eq8_C 4 PSIRRLARELGVDLTR----LRGTG 24 (40) T ss_dssp HHHHHHHHHHTCCGGG----CCCCS T ss_pred HHHHHHHHHCCCCHHH----CCCCC T ss_conf 8999999994998988----82779 No 80 >>2bw2_A Bypass of forespore C; sporulation, signaling protein, BOFC, sigmak checkpoint; NMR {Bacillus subtilis} (A:68-140) Probab=23.37 E-value=24 Score=10.84 Aligned_cols=42 Identities=10% Similarity=-0.022 Sum_probs=31.1 Q ss_pred CCCCCEEECCCCCCCC--CCEEEEEEEECCCCHHHHHHHHHHHH Q ss_conf 8997374236778876--63369999957999899999999999 Q gi|254780662|r 128 NCDWQLYSPESCGIAQ--KQISLIQIHCLKITPEEAIEIKKQLI 169 (1576) Q Consensus 128 D~~G~L~~v~~~~~~~--~~ES~I~Ieidr~~~e~~~~L~~~L~ 169 (1576) +++|.|.-+++.+..+ .--||.+|.+.++.....++|++.|. T Consensus 11 s~dG~LsiF~G~P~~~~~vIqSFFQID~~kLES~~~~~L~~GIr 54 (73) T 2bw2_A 11 SDNGVISTFHGRPEPASEPIQSFFQIDLERLESHMQKNLLKGIP 54 (73) T ss_dssp ETTTEEEEBSSSCSTTSCBSCCCCCCCTTTSCHHHHHHHHHCCS T ss_pred CCCCEEEEEECCCCCCCCEEEEECCCCHHHCCHHHHHHHHCCCC T ss_conf 16988999846987784337886126458899989999985981 No 81 >>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} (A:86-197) Probab=23.30 E-value=24 Score=10.83 Aligned_cols=61 Identities=16% Similarity=0.215 Sum_probs=45.6 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC-C-HHHHHHH---H-----HHCCHHHHHHHHHHHHCCCCH Q ss_conf 8999828999999999999999984579998-4-7899998---8-----839989998889997708317 Q gi|254780662|r 1241 EVSLSRPEIAILLAYAKLKLSEQLLDSTLID-D-PFFFSIL---L-----SYFPRQLSELYSEDIMNHQLR 1301 (1576) Q Consensus 1241 g~gltrpelavLlay~K~~l~~~l~~s~l~d-d-~~~~~~l---~-----~yfP~~l~~~f~~~i~~H~Lr 1301 (1576) ......++.+..|||+-+.|-.++-.+.+.. . .-++.+. . .-||..+-+..-+.|..+|++ T Consensus 40 ~~~~~~~d~~~~l~~siimLnTdlHn~~v~~~~kmt~~~Fi~n~~~~~~~~~~~~~~L~~iY~~I~~~~~~ 110 (112) T 1xsz_A 40 PDVVSNADAAYLLAFQTIMLNTDLHNPSIPEKNKMTVDGLKRNLRGGNNGGDFDAKFLEELYSEIKAKPFE 110 (112) T ss_dssp TTTSSSHHHHHHHHHHHHHHHHHHHCTTSCGGGSCCHHHHHHHTTTTBTTBCCCHHHHHHHHHHHHHSCCC T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC T ss_conf 88789801899999999996421358666554668899999986267787889999999999999718642 No 82 >>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} (I:) Probab=23.14 E-value=24 Score=10.81 Aligned_cols=57 Identities=25% Similarity=0.229 Sum_probs=41.0 Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC----CCCCCCCCHHHCCCCCEEEEEEC Q ss_conf 3101146789999999999808996548645996058----86332443111276620899973 Q gi|254780662|r 923 KKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGD----MSGDVFGNGMLLSRKIQLVAAFD 982 (1576) Q Consensus 923 K~mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGd----msGDVfGNgmLls~~i~lvaafd 982 (1576) +++||+|..--+-.......++++.-.+++|++.--| =+.|-|- -|..++.|+.... T Consensus 30 ~k~GV~A~sL~eL~~K~~~kl~l~~~~~~~~lvLeeDGTeVddEeYF~---tLp~nT~lv~L~~ 90 (100) T 1f2r_I 30 DQHGVAASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFL---CLPSNTKFVALAC 90 (100) T ss_dssp EEEEEEESSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSS---SSCSCCEEEEECS T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEECCHHHHH---CCCCCCEEEEECC T ss_conf 404688389999999999983899765550899937897985588884---1788878999779 No 83 >>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genomics; 1.85A {Pyrococcus horikoshii OT3} (A:1-69,A:202-263) Probab=23.07 E-value=24 Score=10.80 Aligned_cols=53 Identities=23% Similarity=0.254 Sum_probs=35.8 Q ss_pred HHHCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEE-----EEEECC-CCCCCCCC Q ss_conf 98808998501105699998843101146789999999999808996548645-----996058-86332443 Q gi|254780662|r 901 AQEAKFWLDDAFASGGSMGYDHKKMGITARGAWETVKRHFREMDIDIQSTPFT-----VAGVGD-MSGDVFGN 967 (1576) Q Consensus 901 a~~~gfwlgdAFaSGgs~GydHK~mGITarGaw~~v~rhfrelg~D~q~~~fT-----vvgiGd-msGDVfGN 967 (1576) .++.|+.+. ++|++|.= .-+.+..+++++|++...+.+- ++.||| +.-|+-|- T Consensus 29 L~~~G~~~~--ivTN~~~~------------~~~~~~~~L~~lg~~~~~~~i~~sp~~~~~VGD~~~~Di~~A 87 (131) T 1zjj_A 29 LKERGIPFA--FLTNNSTK------------TPEMYREKLLKMGIDVSSSIIITSGEELWMVGDRLDTDIAFA 87 (131) T ss_dssp HHHHTCCEE--EEESCCSS------------CHHHHHHHHHTTTCCCCGGGEEEHTCEEEEEESCTTTHHHHH T ss_pred HHHCCCCEE--EEECCCCC------------CHHHHHHHHHHCCCCCCCCEEECHCCEEEEECCCHHHHHHHH T ss_conf 997799689--99489999------------999999999976998881547511430799768817789999 No 84 >>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle transport, structural genomics, structural genomics consortium, SGC; HET: ANP; 1.90A {Homo sapiens} (A:1-150) Probab=22.48 E-value=23 Score=10.98 Aligned_cols=14 Identities=43% Similarity=0.724 Sum_probs=7.2 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 57888889998998 Q gi|254780662|r 795 AADYRTEVLGLVRA 808 (1576) Q Consensus 795 ~edfrtEvlgL~ka 808 (1576) .||||+.++||+++ T Consensus 101 ~ed~rnlllGl~yg 114 (150) T 2p0a_A 101 GEDYRSLVIGLQYG 114 (150) T ss_dssp TEECHHHHHHHHHT T ss_pred CCHHHHHHHHHHHC T ss_conf 42099999999988 No 85 >>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolase, structural genomics; HET: MSE; 2.10A {Clostridium difficile 630} (A:1-84,A:199-274) Probab=22.37 E-value=25 Score=10.69 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=35.3 Q ss_pred CCCCCHHCCCCCCCCCCCCCCCCH--HHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCC Q ss_conf 998501105699998843101146--78999999999980899654864599605886332 Q gi|254780662|r 906 FWLDDAFASGGSMGYDHKKMGITA--RGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDV 964 (1576) Q Consensus 906 fwlgdAFaSGgs~GydHK~mGITa--rGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDV 964 (1576) +-+...|++.|+.-|++++..... .+-...++....++|++++. ++.+||=..|+ T Consensus 59 lg~~~~i~~nGa~i~~~~~~~~~~~~~~K~~~l~~~~~~~~~~~~~----~~~vGD~~nD~ 115 (160) T 3fzq_A 59 LGVDGYIAGGGNYIQYHGELLYNQSFFHKGKAIKRLQERLGVTQKE----TICFGDGQNDI 115 (160) T ss_dssp TCCSEEEETTTTEEEETTEEEEECCCCSHHHHHHHHHHHHTCCSTT----EEEECCSGGGH T ss_pred HCCCCEEECCCEEEEECCEEEEECCCCCHHHHHHHHHHHCCCCCCE----EEEEECCHHHH T ss_conf 0744234238548861431688334098699999987641436442----99998978779 No 86 >>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} (A:53-230) Probab=22.34 E-value=25 Score=10.69 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=48.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH--------CCHHHHHHHHHHHHCCCCH Q ss_conf 982899999999999999998457999847899998883--------9989998889997708317 Q gi|254780662|r 1244 LSRPEIAILLAYAKLKLSEQLLDSTLIDDPFFFSILLSY--------FPRQLSELYSEDIMNHQLR 1301 (1576) Q Consensus 1244 ltrpelavLlay~K~~l~~~l~~s~l~dd~~~~~~l~~y--------fP~~l~~~f~~~i~~H~Lr 1301 (1576) ...++.+-.|||+.+.|..++-.+.+..-.-+.++.... ||..+-+..-+.|..+|++ T Consensus 104 f~s~d~v~~l~~siimLnTdlHn~~~~~kmt~~~Fi~n~~~~~~~~~~~~e~L~~iY~~I~~~~l~ 169 (178) T 1ku1_A 104 QPDADSVFILSYSIIMLNTDLHNPQVKEHMSFEDYSGNLKGCCNHKDFPFWYLDRVYCSIRDKEIV 169 (178) T ss_dssp CCCHHHHHHHHHHHHHHHHHHTCTTCSSCCCHHHHHHHTTTCBTTBCCCHHHHHHHHHHHHHSCCC T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC T ss_conf 267029999999999964312465335777999999998656677889999999999999848577 No 87 >>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} (A:71-188) Probab=22.33 E-value=25 Score=10.68 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=5.6 Q ss_pred CCHHHHHHHHCCCCCE Q ss_conf 2888999863036530 Q gi|254780662|r 1051 ATPSEIISAILMASVD 1066 (1576) Q Consensus 1051 ~~p~eli~~iL~a~vD 1066 (1576) ++++|+++.||+++-| T Consensus 20 ls~ee~V~kil~CD~d 35 (118) T 1ux5_A 20 LSVADLVKKILNCDRD 35 (118) T ss_dssp SCHHHHHHHHHTTTHH T ss_pred CCHHHHHHHHHHCCHH T ss_conf 9999999999836865 No 88 >>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium} (A:) Probab=22.33 E-value=25 Score=10.68 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=10.4 Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCC Q ss_conf 310114678999999999980899 Q gi|254780662|r 923 KKMGITARGAWETVKRHFREMDID 946 (1576) Q Consensus 923 K~mGITarGaw~~v~rhfrelg~D 946 (1576) +.|||+.+.+-...++.++.+|++ T Consensus 21 ~~l~iS~~TV~~~~~~i~~Klgv~ 44 (61) T 2jpc_A 21 EKLHISIKTVETHRMNMMRKLQVH 44 (61) T ss_dssp HHTCSCHHHHHHHHHHHHHHHTCS T ss_pred HHHCCCHHHHHHHHHHHHHHHCCC T ss_conf 896988999999999999981999 No 89 >>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* (A:) Probab=22.23 E-value=15 Score=12.70 Aligned_cols=59 Identities=12% Similarity=0.210 Sum_probs=43.0 Q ss_pred CCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH Q ss_conf 00000025883046899855510307678999997398683533134437324404767999865887707989889988 Q gi|254780662|r 1091 GNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEVNIKIALASAMRDGRLTLENRNK 1170 (1576) Q Consensus 1091 and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~EVniKIll~~~~~~g~lt~~~Rn~ 1170 (1576) +..+++. ||+=++-||-+-+|-.|| ++.|..|.-+|. +.-.|.+++.+|-++.++.+. T Consensus 204 ~~~FL~~-----Ra~Elv~GG~mvl~~~gr----------------~~~~~~~~~~~l-l~~al~dlv~eGlI~eek~ds 261 (384) T 2efj_A 204 FTTFLRI-----HSEELISRGRMLLTFICK----------------EDEFDHPNSMDL-LEMSINDLVIEGHLEEEKLDS 261 (384) T ss_dssp HHHHHHH-----HHHHEEEEEEEEEEEECC----------------CTTTCCCCHHHH-HHHHHHHHHHHTSSCHHHHHT T ss_pred HHHHHHH-----HHHHHCCCCEEEEEECCC----------------CCCCCCCCHHHH-HHHHHHHHHHCCCCCHHHHHH T ss_conf 9999998-----999835786599973355----------------767785528999-999999999839858999950 Q ss_pred H Q ss_conf 9 Q gi|254780662|r 1171 L 1171 (1576) Q Consensus 1171 l 1171 (1576) + T Consensus 262 F 262 (384) T 2efj_A 262 F 262 (384) T ss_dssp C T ss_pred C T ss_conf 5 No 90 >>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} (A:96-215,A:367-382) Probab=22.13 E-value=25 Score=10.65 Aligned_cols=14 Identities=14% Similarity=0.142 Sum_probs=5.4 Q ss_pred HHHHHHHHHHCCCC Q ss_conf 99999998752888 Q gi|254780662|r 675 QLLFSLFRYRFDPS 688 (1576) Q Consensus 675 ~~l~~~F~~rFdP~ 688 (1576) +.+++++...-+|+ T Consensus 30 ~~~~~~L~~~Qn~D 43 (136) T 1w6k_A 30 EEIVRYLRSVQLPD 43 (136) T ss_dssp HHHHHHHHHHSCTT T ss_pred HHHHHHHHHHCCCC T ss_conf 99999999710789 No 91 >>2oo4_A Notch 2, neurogenic locus notch homolog protein 2, HN2, notch2, NOTC2; alpha-beta-sandwich, SEA domain, LNR, LIN12 notch repeat, cysteine-rich; 2.00A {Homo sapiens} (A:49-234) Probab=21.48 E-value=26 Score=10.55 Aligned_cols=62 Identities=11% Similarity=0.028 Sum_probs=39.6 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECC Q ss_conf 79999478774389999999997799127998464899988997374236778876633699999579 Q gi|254780662|r 88 SIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLK 155 (1576) Q Consensus 88 tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr 155 (1576) +++.++.-+..-+--+-...|...+ .++|.++.+++|..|+..-.... ++...|.++++||. T Consensus 77 ~L~i~~~~~p~~f~~~~~~fLr~ls----~~Lrt~Vri~~D~~g~~mi~~~~--~e~~gs~v~leiDn 138 (186) T 2oo4_A 77 TLVIVVLMPPEQLLQDARSFLRALG----TLLHTNLRIKRDSQGELMVYPYY--GEVAGSKVFLEIDN 138 (186) T ss_dssp EEEEEESSCHHHHHHTHHHHHHHHH----HHHTSEEEECBCTTSCBCEEEEE--SSSEEEEEEEEEEC T ss_pred EEEEEEEECHHHHHHHHHHHHHHHH----HHHCCCEEEEECCCCCEEEECCC--CCCCCEEEEEEECC T ss_conf 0899995199999876587999988----76365058888788881465578--88565499999637 No 92 >>2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Haemophilus somnus 129PT} (A:1-172,A:445-487) Probab=21.36 E-value=26 Score=10.53 Aligned_cols=171 Identities=8% Similarity=0.035 Sum_probs=100.6 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEE---EEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHH Q ss_conf 789999999999808996548645---99605886332443111276620899973943686777881379899999996 Q gi|254780662|r 930 RGAWETVKRHFREMDIDIQSTPFT---VAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFD 1006 (1576) Q Consensus 930 rGaw~~v~rhfrelg~D~q~~~fT---vvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~ 1006 (1576) ..+-++++..|+++|.+++..++. ++-.....++. ++.+.|.+-.|+.+.. ||. T Consensus 31 ~~~a~~l~~~l~~lG~~~e~~~~~~~~~~~~~~~~~~~-------~~~i~l~~h~D~v~~~-~~~--------------- 87 (215) T 2qyv_A 31 EQLAQFIINWAKTKGFFAERDEVGNVLIRKPATVGXEN-------RKPVVLQAHLDXVPQA-NEG--------------- 87 (215) T ss_dssp HHHHHHHHHHHHHTTCEEEECTTCCEEEEECCCTTCTT-------BCCEEEEEESCBCCC-------------------- T ss_pred HHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCCC-------CCEEEEEEEECCCCCC-CCC--------------- T ss_conf 99999999999978998999378759999867788899-------9989998422517889-987--------------- Q ss_pred CCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHH-----HCCCCCEEECCCCCCCEECCCC Q ss_conf 68987003897871789708982144421798999870988554288899986-----3036530443387421112689 Q gi|254780662|r 1007 SPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISA-----ILMASVDLLWFGGIGTYIRAPR 1081 (1576) Q Consensus 1007 lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~-----iL~a~vDLlw~gGiGTYvka~~ 1081 (1576) ....|.-=+-++.-.+|.+|.|.+-.-+- +...--+.+++ +++.++-+++.++ . T Consensus 88 -~~~~w~~~Pf~~~~~d~~i~GrG~~D~Kg------------~~a~~l~a~~~lk~~~~~~~~I~~~f~~d--------E 146 (215) T 2qyv_A 88 -TNHNFDQDPILPYIDGDWVKAKGTTLGAD------------NGIGXASALAVLESNDIAHPELEVLLTXT--------E 146 (215) T ss_dssp -------CCCCCEEECSSEEEETTBCCCHH------------HHHHHHHHHHHHHCSSSCCSSEEEEEESC--------T T ss_pred -CCCCCCCCCCEEEEECCEEECCCCCCCCC------------CHHHHHHHHHHHHHCCCCCCCEEEEEEEE--------C T ss_conf -74546679815798577998688537887------------62555445444331145788706999994--------4 Q ss_pred CCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 8620015210000002588304689985551030767899999739868353313443732440476799986588 Q gi|254780662|r 1082 ENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEVNIKIALASA 1157 (1576) Q Consensus 1082 e~~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~EVniKIll~~~ 1157 (1576) ++|.+.=..+.-+.....+-+++|++|+-+-.-| --.-|.-.-.--|+-|+.+-++|++...+ T Consensus 147 ----E~G~~G~~~~~~~~~~~d~~i~~D~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (215) T 2qyv_A 147 ----ERGXEGAIGLRPNWLRSEILINTDTETIDXVSIG---------PTIRNAHSPDEKVHIPAVETYWKVLTGIL 209 (215) T ss_dssp ----TTTCHHHHTCCSSCCCCSEEEECCCCTSEEEECC---------CCEESTTSTTCEEEHHHHHHHHHHHHHHH T ss_pred ----CCCCCCCCCCHHHCCCCCEEEEECCCCCCEEEEC---------CCCCCCCCCCCEEEHHHHHHHHHHHHHHH T ss_conf ----6778861110111124443688524699889989---------99999988775588999999999999999 No 93 >>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A (A:) Probab=21.06 E-value=26 Score=10.49 Aligned_cols=14 Identities=29% Similarity=0.591 Sum_probs=6.9 Q ss_pred HHHHHHHHCCCCCC Q ss_conf 99999998089965 Q gi|254780662|r 935 TVKRHFREMDIDIQ 948 (1576) Q Consensus 935 ~v~rhfrelg~D~q 948 (1576) +|++..+|+|||+. T Consensus 10 ~aRklA~e~gidl~ 23 (62) T 1w4i_A 10 AARRLAKELGIDLS 23 (62) T ss_dssp HHHHHHHHHTCCGG T ss_pred HHHHHHHHCCCCHH T ss_conf 99999999299888 No 94 >>1qyn_A Protein-export protein SECB; tetramer, greek KEY beta sheet, chaperone; 2.35A {Escherichia coli} (A:) Probab=21.02 E-value=26 Score=10.48 Aligned_cols=41 Identities=20% Similarity=0.163 Sum_probs=27.9 Q ss_pred EEEEEEEEEEECHHH-----------HCCCHHHCCHHHHHHHHHHHHCCCCC Q ss_conf 877878852100476-----------26885546208999999999748898 Q gi|254780662|r 309 LIGELHVVGFFTRLV-----------YSQRASKIPLLREKIVKVQNLLNFHP 349 (1576) Q Consensus 309 viGE~RFlGLFTSsA-----------Y~~sv~~IPiLRrKV~~VL~~sGf~p 349 (1576) .+-|.-..|+|+-.- .+....=-|++|+=|..+..++||+| T Consensus 74 F~iev~~~GiF~i~~i~~e~~~~~l~i~~p~iLfPY~R~~Vs~lt~~~gfpp 125 (153) T 1qyn_A 74 FLCEVQQGGIFSIAGIEGTQMAHCLGAYCPNILFPYARECITSMVSRGTFPQ 125 (153) T ss_dssp EEEEEEEEEEEEEESCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCCC T ss_pred EEEEEEEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 9999999999997377077787778633838887899999999998469998 No 95 >>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} (A:1-27,A:149-257) Probab=20.84 E-value=25 Score=10.74 Aligned_cols=66 Identities=12% Similarity=0.261 Sum_probs=40.5 Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHH Q ss_conf 31011467899999999998089965486459960588633244311127662089997394368677788137989999 Q gi|254780662|r 923 KKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERK 1002 (1576) Q Consensus 923 K~mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~ 1002 (1576) +.=|.|+-.|-. -|+||| =+++|+|+..-.+..+- .++-=-++--++++|+|+.-..|.++. T Consensus 61 ~~GG~tSHaAIi-----AR~lgI------P~Vvg~~~~~~~i~~G~-------~viiDg~~G~V~inP~~~~~~~y~~~~ 122 (136) T 2hwg_A 61 DAGGRTSXTSIX-----ARSLEL------PAIVGTGSVTSQVKNDD-------YLILDAVNNQVYVNPTNEVIDKXRAVQ 122 (136) T ss_dssp SSCCTTSHHHHH-----HHHTTC------CEEECCSCHHHHCCTTC-------EEEEETTTTEEEESCCHHHHHHHHHHH T ss_pred ECCCCCCCHHHH-----HHHCCC------CEEEECCCCHHHHCCCC-------EEEECCCCEEEEECCCCHHHHHHHHHH T ss_conf 626654209999-----997288------64874254222305650-------899815401786035401344555568 Q ss_pred HHHH Q ss_conf 9996 Q gi|254780662|r 1003 RLFD 1006 (1576) Q Consensus 1003 RLf~ 1006 (1576) +-+. T Consensus 123 ~~~~ 126 (136) T 2hwg_A 123 EQVA 126 (136) T ss_dssp HHHH T ss_pred HHHH T ss_conf 7767 No 96 >>1hwx_A GDH, glutamate dehydrogenase; allostery, abortive complex, oxidoreductase; HET: GLU GTP NAI; 2.50A {Bos taurus} (A:208-241,A:373-474) Probab=20.74 E-value=16 Score=12.43 Aligned_cols=12 Identities=42% Similarity=0.783 Sum_probs=11.0 Q ss_pred CCCCCCCCCHHH Q ss_conf 443732440476 Q gi|254780662|r 1137 NSGGVNCSDLEV 1148 (1576) Q Consensus 1137 NsaGV~~Sd~EV 1148 (1576) |+|||..|=+|- T Consensus 36 NAGGVtVSYFEW 47 (136) T 1hwx_A 36 NAGGVTVSYFQI 47 (136) T ss_dssp TTHHHHHHHHHH T ss_pred CCCCEEEEHHHH T ss_conf 075611119999 No 97 >>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, aromatic amino acid biosynthesis, NADP; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* (A:100-250) Probab=20.59 E-value=27 Score=10.41 Aligned_cols=39 Identities=10% Similarity=0.081 Sum_probs=29.4 Q ss_pred HHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHC Q ss_conf 999999999808996548645996058863324431112 Q gi|254780662|r 933 WETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGMLL 971 (1576) Q Consensus 933 w~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgmLl 971 (1576) |....+.+++.+.|++...+-++|.|+|+--|.=.-.-+ T Consensus 2 ~~g~~~~l~~~~~~~~~k~vlviGaG~~g~~va~~L~~~ 40 (151) T 3don_A 2 GIGYVNGLKQIYEGIEDAYILILGAGGASKGIANELYKI 40 (151) T ss_dssp HHHHHHHHHHHSTTGGGCCEEEECCSHHHHHHHHHHHTT T ss_pred HHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHH T ss_conf 288875554123565553244113444203344566641 No 98 >>3d7i_A Carboxymuconolactone decarboxylase family protein; 1591455, structural genomics, joint center for structural genomics, JCSG; HET: MSE PG4; 1.75A {Methanocaldococcus jannaschii} (A:38-105) Probab=20.54 E-value=27 Score=10.40 Aligned_cols=58 Identities=12% Similarity=0.116 Sum_probs=41.9 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHH--H-HHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCC Q ss_conf 7999999999998867352389998--8-8709999999999999999819378999998607 Q gi|254780662|r 1301 RRAIVATVLANEIINKGGSCFVVSL--A-KETGSSTEDVIRSAVIAYAGYELESLWQEVDKLD 1360 (1576) Q Consensus 1301 rREIIaT~laN~iVNr~G~tF~~rl--~-e~tGa~~~~i~rAy~~a~~if~l~~l~~~I~aLd 1360 (1576) -||+|+-.+ .+.++....+-+.+ . -+.|++..+|..+..++--.-|.+..+..+..++ T Consensus 6 ~r~Li~la~--~~a~~~~~~l~~H~~~A~l~~G~T~eEi~Eai~~~~~~~G~p~~~~a~~~~~ 66 (68) T 3d7i_A 6 TQKLIAIGI--VASRCDEVAIEKQXKSAXKELGITKEEIADVLRVVLLTSGXPAFTKAXKILE 66 (68) T ss_dssp HHHHHHHHH--HHTSSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHH T ss_pred HHHHHHHHH--HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH T ss_conf 999999999--9995998999999999987179999999999999999860899999999997 No 99 >>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus HB27} PDB: 3bk1_A* (A:466-562) Probab=20.47 E-value=27 Score=10.39 Aligned_cols=30 Identities=10% Similarity=-0.036 Sum_probs=20.7 Q ss_pred HHHHHHHHCCCEEECCCCCCCCCCCCCCHH Q ss_conf 789999973986835331344373244047 Q gi|254780662|r 1118 QARVVYSLNGGRINSDAIDNSGGVNCSDLE 1147 (1576) Q Consensus 1118 ~~Rie~a~~Gg~intDaidNsaGV~~Sd~E 1147 (1576) +-|..+|..|..+.+=++|.++|...++.= T Consensus 6 ~eR~~La~~Gvv~v~v~id~~~~P~i~srG 35 (97) T 3bk2_A 6 ADRRHXAEEGLVVITALAGEDPVVEVVSRG 35 (97) T ss_dssp HHHHHHHHHCEEEEEEEESSSCEEEEEEES T ss_pred HHHHHHHHCCEEEEEEEECCCCCCEEEEEC T ss_conf 999999729859999998899961698436 No 100 >>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center for structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} (A:1-127) Probab=20.40 E-value=27 Score=10.38 Aligned_cols=35 Identities=11% Similarity=0.101 Sum_probs=21.7 Q ss_pred CCCCE--EEEEECCCCCCCCCCHHHCCCCCEEEEEEC Q ss_conf 54864--599605886332443111276620899973 Q gi|254780662|r 948 QSTPF--TVAGVGDMSGDVFGNGMLLSRKIQLVAAFD 982 (1576) Q Consensus 948 q~~~f--TvvgiGdmsGDVfGNgmLls~~i~lvaafd 982 (1576) +.++. -++|.|.|.....-..+..++.+.++|++| T Consensus 4 ~~~~irv~iiG~G~~g~~~~~~~~~~~~~~~iv~i~d 40 (127) T 3kux_A 4 XADKIKVGLLGYGYASKTFHAPLIXGTPGLELAGVSS 40 (127) T ss_dssp TTCCEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEEC T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEEC T ss_conf 2114449999796999999999983498849999989 No 101 >>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A (A:1-75,A:195-259) Probab=20.13 E-value=27 Score=10.34 Aligned_cols=87 Identities=11% Similarity=0.174 Sum_probs=44.7 Q ss_pred HHCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCE------EEEEECC-CCCCCCCCHHHCCCC Q ss_conf 880899850110569999884310114678999999999980899654864------5996058-863324431112766 Q gi|254780662|r 902 QEAKFWLDDAFASGGSMGYDHKKMGITARGAWETVKRHFREMDIDIQSTPF------TVAGVGD-MSGDVFGNGMLLSRK 974 (1576) Q Consensus 902 ~~~gfwlgdAFaSGgs~GydHK~mGITarGaw~~v~rhfrelg~D~q~~~f------TvvgiGd-msGDVfGNgmLls~~ 974 (1576) ++.|+.++ ++|.+|.-. -+.+..+++.+|++..-+.+ -++.||| +..|+-|---. . T Consensus 36 ~~~G~~~~--iiTN~~~~~------------~~~~~~~L~~~Gl~~~f~~ii~~~p~~~~~VGD~~~~Di~~a~~~---G 98 (140) T 2ho4_A 36 RATSVXVR--FVTNTTKET------------KKDLLERLKKLEFEISEDEIFTSAPEEAVXIGDDCRDDVDGAQNI---G 98 (140) T ss_dssp HTSSCEEE--EEECCSSCC------------HHHHHHHHHHTTCCCCGGGEEEHCGGGEEEEESCTTTTHHHHHHT---T T ss_pred HHCCCCEE--EEECCCCCC------------HHHHHHHHHHCCCCCCCEEEECHCCCCCEEECCCHHHHHHHHHHC---C T ss_conf 98699889--994899899------------999999986304677700572176311247437837589999987---9 Q ss_pred CEEEEEECCCEEEECC---C--CCC-CCCHHHHHHHH Q ss_conf 2089997394368677---7--881-37989999999 Q gi|254780662|r 975 IQLVAAFDHSDIFIDP---D--PNS-ETTFDERKRLF 1005 (1576) Q Consensus 975 i~lvaafdh~hif~DP---~--PD~-~~s~~Er~RLf 1005 (1576) .+-+..-.+.+--.++ . ||- -.|+.|..++. T Consensus 99 ~~ti~v~~g~~~~~~~~~~~~~pd~~i~~l~el~~~l 135 (140) T 2ho4_A 99 XLGILVKTGKYKAADEEKINPPPYLTCESFPHAVDHI 135 (140) T ss_dssp CEEEEESSTTCCTTGGGGSSSCCSEEESCHHHHHHHH T ss_pred CCEEEECCCCCCHHHHHCCCCCCCEEECCHHHHHHHH T ss_conf 9299989999996786146899978989999999999 Done!