Query         gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 1576
No_of_seqs    192 out of 453
Neff          4.7 
Searched_HMMs 33803
Date          Wed Jun  1 15:46:49 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780662.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2tmg_A Protein (glutamate deh  99.5 2.2E-12 6.6E-17  126.5  15.2  166  925-1149   37-205 (267)
  2 >1v9l_A Glutamate dehydrogenas  99.1 1.4E-09 4.1E-14  101.6  10.7  208  918-1183    4-211 (219)
  3 >2bma_A Glutamate dehydrogenas  98.9 1.4E-08 4.2E-13   92.7  10.3  212  924-1189    4-217 (222)
  4 >1bgv_A Glutamate dehydrogenas  98.8 2.4E-08 7.2E-13   90.6   7.3  184  922-1153    2-188 (248)
  5 >1gtm_A Glutamate dehydrogenas  98.6 1.3E-06 3.8E-11   75.3  11.9  191  922-1179    2-195 (211)
  6 >1leh_A Leucine dehydrogenase;  98.6 5.7E-07 1.7E-11   78.5   9.5  115  760-907     9-133 (137)
  7 >1gtm_A Glutamate dehydrogenas  97.4  0.0072 2.1E-07   42.1  12.7  138  775-943    57-200 (208)
  8 >1hwx_A GDH, glutamate dehydro  97.4  0.0017   5E-08   47.7   9.0  125  952-1134    4-130 (131)
  9 >2bma_A Glutamate dehydrogenas  97.4  0.0074 2.2E-07   42.0  12.2  122  774-924   100-228 (248)
 10 >1v9l_A Glutamate dehydrogenas  97.3   0.004 1.2E-07   44.4  10.2  135  774-945    57-198 (202)
 11 >1c1d_A L-phenylalanine dehydr  97.2  0.0075 2.2E-07   41.9  11.1  125  757-909     4-138 (144)
 12 >1bgv_A Glutamate dehydrogenas  97.0   0.018 5.2E-07   38.7  11.4  116  774-917    77-196 (201)
 13 >2tmg_A Protein (glutamate deh  96.9   0.012 3.6E-07   40.0   9.7  116  774-917    24-143 (148)
 14 >1vl6_A Malate oxidoreductase;  96.7  0.0061 1.8E-07   42.7   7.0  146  928-1134    4-153 (156)
 15 >1hwx_A GDH, glutamate dehydro  95.8   0.032 9.4E-07   36.4   6.4  143  777-946    81-232 (234)
 16 >1u8s_A Glycine cleavage syste  87.8     1.5 4.6E-05   21.4   8.6   80   84-175     4-83  (106)
 17 >2nyi_A Unknown protein; prote  86.8     1.7 5.1E-05   21.0   7.5   75   85-175     7-82  (111)
 18 >3lou_A Formyltetrahydrofolate  85.3       2 5.9E-05   20.4   8.9   76   84-175     7-83  (93)
 19 >1u8s_A Glycine cleavage syste  76.3     3.7 0.00011   18.0   8.8   69   85-174     4-72  (86)
 20 >1zpv_A ACT domain protein; st  75.9     3.8 0.00011   18.0   9.9   68   85-173     3-71  (91)
 21 >1tlt_A Putative oxidoreductas  64.3     6.3 0.00019   16.0   3.7   89  951-1070    7-95  (184)
 22 >2p0l_A Lipoate-protein ligase  59.2     7.1 0.00021   15.5   2.5  118  870-991    46-185 (288)
 23 >1h6d_A Precursor form of gluc  59.1     2.7 7.9E-05   19.3   0.3   72  949-1027   81-154 (210)
 24 >2c8m_A Lipoate-protein ligase  57.2       8 0.00024   15.1   3.0  118  870-993    33-171 (262)
 25 >2bnm_A Epoxidase; oxidoreduct  55.2     3.4   1E-04   18.4   0.3   19 1108-1126   46-64  (76)
 26 >1w91_A Beta-xylosidase; MAD,   50.3      10 0.00029   14.2   2.7   82  209-295    10-97  (128)
 27 >1fiu_A Type II restriction en  49.4     9.7 0.00029   14.3   1.9   63  886-960    33-100 (286)
 28 >3ct8_A Protein BH2160, putati  48.1     7.3 0.00022   15.4   1.1   24  204-231    29-52  (79)
 29 >2ve8_A FTSK, DNA translocase   47.9      11 0.00032   13.9   3.4   47 1175-1224   11-57  (73)
 30 >3id5_A NOP5, PRE mRNA splicin  46.4     2.1 6.1E-05   20.3  -1.9   27  604-630    91-117 (133)
 31 >2v6z_M DNA polymerase epsilon  45.5     7.8 0.00023   15.2   0.9   50  320-369    16-65  (99)
 32 >2rk0_A Glyoxalase/bleomycin r  45.4      12 0.00034   13.6   3.7   48  916-963     2-53  (69)
 33 >3i23_A Oxidoreductase, GFO/ID  45.3     7.7 0.00023   15.2   0.9   66  951-1027    4-69  (125)
 34 >1y7p_A Hypothetical protein A  44.8      12 0.00035   13.6   4.4   68   87-169     4-71  (83)
 35 >2p5i_A BH3822 protein; PFAM03  43.4      12 0.00037   13.4   1.9  127  870-1006   49-195 (288)
 36 >1nvm_B Acetaldehyde dehydroge  43.1       4 0.00012   17.7  -0.8   36  951-993     6-41  (158)
 37 >1jqo_A Phosphoenolpyruvate ca  43.0      12 0.00034   13.6   1.5   18  773-790   351-368 (424)
 38 >2p5z_X Type VI secretion syst  43.0      12 0.00037   13.3   3.8   55  892-946    13-68  (90)
 39 >2pgn_A Cyclohexane-1,2-dione   41.6      13 0.00039   13.2   4.1   96  877-980    23-119 (190)
 40 >2v8f_A Profilin-2, profilin I  41.3      12 0.00035   13.6   1.3   58 1010-1074    2-70  (140)
 41 >2jz8_A Uncharacterized protei  40.9     6.9  0.0002   15.6   0.1   33  980-1021   33-66  (87)
 42 >3iol_B Glucagon; receptor-lig  40.4      14  0.0004   13.0   1.8   13  207-219    17-29  (31)
 43 >3f4l_A Putative oxidoreductas  39.5     7.1 0.00021   15.5  -0.0   94  952-1074    5-99  (125)
 44 >1r8s_E ARNO; protein transpor  38.3      14 0.00043   12.8   9.0   61 1241-1301   40-108 (116)
 45 >2nyi_A Unknown protein; prote  37.9      15 0.00043   12.7   8.7   57   86-160     4-60  (84)
 46 >1jhf_A LEXA repressor; LEXA S  37.4      15 0.00044   12.7   6.5   50  635-684     3-53  (72)
 47 >3e82_A Putative oxidoreductas  36.0      15 0.00046   12.5   4.8   80  951-1044    9-88  (127)
 48 >3dnp_A Stress response protei  33.4      17  0.0005   12.2   4.5   71  890-964    46-116 (175)
 49 >1jrj_A Exendin-4; Trp-CAGE, G  32.8      17 0.00051   12.1   2.0   13  207-219    17-29  (39)
 50 >2coo_A Lipoamide acyltransfer  32.7      17  0.0005   12.2   1.0   16  934-949    20-35  (70)
 51 >2g49_C Glucagon preproprotein  32.6      17 0.00051   12.1   1.7   14  205-218    15-28  (29)
 52 >2ko1_A CTR148A, GTP pyrophosp  31.8      18 0.00052   12.0   6.2   64   87-170     5-68  (88)
 53 >1jqn_A Pepcase, PEPC, phospho  31.3      17 0.00051   12.1   0.9   17  774-790   348-364 (420)
 54 >2olp_A Hemoglobin II; oxygen   30.6      18 0.00055   11.8   3.5   42  634-675     2-43  (152)
 55 >1zr6_A Glucooligosaccharide o  30.3      15 0.00045   12.6   0.4   10  976-985   156-165 (168)
 56 >2zog_A Cytosolic non-specific  30.2      19 0.00055   11.8   3.9  149  929-1116   45-206 (236)
 57 >2bsz_A Arylamine N-acetyltran  29.3      19 0.00057   11.7   1.2   32   71-102    46-77  (113)
 58 >1xou_A ESPA; coiled coil, hel  29.3      13 0.00039   13.1   0.0   31  166-196   158-188 (192)
 59 >3fhl_A Putative oxidoreductas  29.2      17 0.00052   12.0   0.6   59  951-1024    7-65  (126)
 60 >1nha_A TFIIF-alpha, transcrip  28.6      20 0.00059   11.6   2.0   35  656-690    17-51  (82)
 61 >3d9w_A Putative acetyltransfe  28.4      11 0.00033   13.8  -0.5   35   69-103    44-78  (157)
 62 >2ija_A Arylamine N-acetyltran  28.4      19 0.00055   11.8   0.6  108   27-134    30-166 (295)
 63 >1o08_A Beta-phosphoglucomutas  27.9      20  0.0006   11.5   5.6   50  642-693     6-55  (77)
 64 >1fx3_A SECB, protein-export p  27.7      20  0.0006   11.5   2.3   42  309-350    83-135 (169)
 65 >3ec7_A Putative dehydrogenase  27.4      21 0.00061   11.4   4.0   99  950-1075   24-122 (149)
 66 >2hhc_A NODZ, nodulation fucos  27.1      21 0.00062   11.4   1.5   20  771-790    19-38  (181)
 67 >2o7s_A DHQ-SDH, bifunctional   26.8      13 0.00039   13.1  -0.4   42  933-974    15-56  (190)
 68 >1w85_I Dihydrolipoyllysine-re  26.7      21 0.00062   11.3   1.2   16  934-949    11-26  (49)
 69 >2qva_A GM27569P; translin, D.  26.6      21 0.00063   11.3   6.3   34 1488-1521  165-198 (247)
 70 >2f60_K Pyruvate dehydrogenase  26.2      21 0.00064   11.3   1.1   16  934-949    14-29  (64)
 71 >3h0g_A DNA-directed RNA polym  25.7      15 0.00043   12.7  -0.3   75  974-1061    6-83  (118)
 72 >1nvt_A Shikimate 5'-dehydroge  25.6      22 0.00065   11.2   1.4   61  933-1004    2-62  (160)
 73 >1ou9_A Stringent starvation p  25.4      22 0.00066   11.1   1.9   15  209-223    13-27  (129)
 74 >2r09_A Cytohesin-3; autoinhib  25.1      22 0.00066   11.1   9.0   63 1239-1301   38-108 (132)
 75 >2vfm_A Bifunctional tail prot  25.0      14 0.00043   12.8  -0.4   18  980-997   224-241 (382)
 76 >3k1t_A Glutamate--cysteine li  24.5      23 0.00068   11.0   0.8   22  932-955    32-53  (103)
 77 >1ou8_A Stringent starvation p  24.2      23 0.00069   11.0   1.9   15  209-223    13-27  (111)
 78 >2f1f_A Acetolactate synthase   23.8      24  0.0007   10.9   6.5   65   87-171     4-68  (79)
 79 >2eq8_C Pyruvate dehydrogenase  23.5      24  0.0007   10.9   1.3   21  934-958     4-24  (40)
 80 >2bw2_A Bypass of forespore C;  23.4      24 0.00071   10.8   0.6   42  128-169    11-54  (73)
 81 >1xsz_A Guanine nucleotide exc  23.3      24 0.00071   10.8   7.6   61 1241-1301   40-110 (112)
 82 >1f2r_I Inhibitor of caspase-a  23.1      24 0.00071   10.8   2.4   57  923-982    30-90  (100)
 83 >1zjj_A Hypothetical protein P  23.1      24 0.00072   10.8   2.7   53  901-967    29-87  (131)
 84 >2p0a_A Synapsin-3, synapsin I  22.5      23 0.00068   11.0   0.2   14  795-808   101-114 (150)
 85 >3fzq_A Putative hydrolase; YP  22.4      25 0.00074   10.7   2.5   55  906-964    59-115 (160)
 86 >1ku1_A ARF guanine-nucleotide  22.3      25 0.00074   10.7   6.6   58 1244-1301  104-169 (178)
 87 >1ux5_A BNI1 protein; structur  22.3      25 0.00074   10.7   0.5   16 1051-1066   20-35  (118)
 88 >2jpc_A SSRB; DNA binding prot  22.3      25 0.00074   10.7   0.6   24  923-946    21-44  (61)
 89 >2efj_A 3,7-dimethylxanthine m  22.2      15 0.00044   12.7  -0.8   59 1091-1171  204-262 (384)
 90 >1w6k_A Lanosterol synthase; c  22.1      25 0.00074   10.7   2.5   14  675-688    30-43  (136)
 91 >2oo4_A Notch 2, neurogenic lo  21.5      26 0.00076   10.6   2.5   62   88-155    77-138 (186)
 92 >2qyv_A XAA-His dipeptidase; Y  21.4      26 0.00077   10.5   5.4  171  930-1157   31-209 (215)
 93 >1w4i_A Pyruvate dehydrogenase  21.1      26 0.00078   10.5   1.0   14  935-948    10-23  (62)
 94 >1qyn_A Protein-export protein  21.0      26 0.00078   10.5   2.0   41  309-349    74-125 (153)
 95 >2hwg_A Phosphoenolpyruvate-pr  20.8      25 0.00073   10.7   0.1   66  923-1006   61-126 (136)
 96 >1hwx_A GDH, glutamate dehydro  20.7      16 0.00047   12.4  -0.9   12 1137-1148   36-47  (136)
 97 >3don_A Shikimate dehydrogenas  20.6      27 0.00079   10.4   2.1   39  933-971     2-40  (151)
 98 >3d7i_A Carboxymuconolactone d  20.5      27 0.00079   10.4   4.9   58 1301-1360    6-66  (68)
 99 >3bk2_A RNAse J, metal depende  20.5      27 0.00079   10.4   1.0   30 1118-1147    6-35  (97)
100 >3kux_A Putative oxidoreductas  20.4      27  0.0008   10.4   0.7   35  948-982     4-40  (127)
101 >2ho4_A Haloacid dehalogenase-  20.1      27 0.00081   10.3   1.6   87  902-1005   36-135 (140)

No 1  
>>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} (A:1-32,A:181-415)
Probab=99.49  E-value=2.2e-12  Score=126.47  Aligned_cols=166  Identities=24%  Similarity=0.262  Sum_probs=135.8

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHH-CC--CCCEEEEEECCCEEEECCCCCCCCCHHHH
Q ss_conf             0114678999999999980899654864599605886332443111-27--66208999739436867778813798999
Q gi|254780662|r  925 MGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGML-LS--RKIQLVAAFDHSDIFIDPDPNSETTFDER 1001 (1576)
Q Consensus       925 mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgmL-ls--~~i~lvaafdh~hif~DP~PD~~~s~~Er 1001 (1576)
                      -..|+.|+..+++.-++.+|.|+....|.+.|.|    +|.+|-.. |.  ...|+|++.|+.+..+||+   |.+..|.
T Consensus        37 ~~ATg~GV~~~~~~al~~~g~~l~g~rvaIqGfG----~VG~~~A~~L~~e~GakiV~v~D~~G~i~~~~---GlD~~~L  109 (267)
T 2tmg_A           37 EEATGRGVKVCAGLAMDVLGIDPKKATVAVQGFG----NVGQFAALLISQELGSKVVAVSDSRGGIYNPE---GFDVEEL  109 (267)
T ss_dssp             TTHHHHHHHHHHHHHHHHTTCCTTTCEEEEECCS----HHHHHHHHHHHHTTCCEEEEEECSSCEEECTT---CCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEC----CCHHHHHHHHHHHCCCEEEEEECCCCEEECCC---CCCHHHH
T ss_conf             6678878899999888747998578759999806----81699998767757974999716773478875---6761679


Q ss_pred             HHHHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCEECCCC
Q ss_conf             99996689870038978717897089821444217989998709885542888999863036530443387421112689
Q gi|254780662|r 1002 KRLFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRAPR 1081 (1576)
Q Consensus      1002 ~RLf~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYvka~~ 1081 (1576)
                      .++.+.. -++.+|...                              ..++++    .++..++|+|.+|..+       
T Consensus       110 ~~~~~~~-g~~~~~~~a------------------------------~~~~~~----~i~~~~~DV~iP~A~~-------  147 (267)
T 2tmg_A          110 IRYKKEH-GTVVTYPKG------------------------------ERITNE----ELLELDVDILVPAALE-------  147 (267)
T ss_dssp             HHHHHHS-SCSTTCSSS------------------------------EEECHH----HHTTCSCSEEEECSST-------
T ss_pred             HHHHHHC-CCCCCCCCC------------------------------EECCCC----CCCCCCCCEEEECCCC-------
T ss_conf             9999861-876556674------------------------------433641----0005765689645766-------


Q ss_pred             CCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHH
Q ss_conf             86200152100000025883046899855510307678999997398683533134437324404767
Q gi|254780662|r 1082 ENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEVN 1149 (1576)
Q Consensus      1082 e~~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~EVn 1149 (1576)
                       ...+.         -+...++||+|+||+|..+|+.++-.++.+|+.+.+|++.|+|||+||.+|..
T Consensus       148 -~~I~~---------e~a~~l~ak~VvegAN~plt~ea~~~L~~rGI~v~PD~~aNaGGVi~s~~E~~  205 (267)
T 2tmg_A          148 -GAIHA---------GNAERIKAKAVVEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWV  205 (267)
T ss_dssp             -TSBCH---------HHHTTCCCSEEECCSSSCBCHHHHHHHHHTTCEEECHHHHTCHHHHHHHHHHH
T ss_pred             -CCCCH---------HHHHHHHHCCEEECCCCCCCHHHHHHHHHCCEEEECHHHHCCCCEEEEHHHHH
T ss_conf             -77688---------89987622618715888889889999974891897768855887565579875


No 2  
>>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} (A:177-395)
Probab=99.09  E-value=1.4e-09  Score=101.65  Aligned_cols=208  Identities=20%  Similarity=0.155  Sum_probs=151.9

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCC
Q ss_conf             99884310114678999999999980899654864599605886332443111276620899973943686777881379
Q gi|254780662|r  918 MGYDHKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETT  997 (1576)
Q Consensus       918 ~GydHK~mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s  997 (1576)
                      .|.+|+..| |+.|++.+++.-++.+|.|+....+.+.|.|.-..-+  -.||+....+.++..|..+..+||+   +.+
T Consensus         4 gg~~dd~~g-Tg~gv~~~~~~~l~~~g~~l~~~rv~i~G~G~vg~~~--a~~l~~~g~~~i~~~d~~G~i~~~~---g~~   77 (219)
T 1v9l_A            4 WGNPVREYA-TGFGVAVATREMAKKLWGGIEGKTVAIQGMGNVGRWT--AYWLEKMGAKVIAVSDINGVAYRKE---GLN   77 (219)
T ss_dssp             SCCGGGGGH-HHHHHHHHHHHHHHHHHSCCTTCEEEEECCSHHHHHH--HHHHHTTTCEEEEEECSSCEEECTT---CCC
T ss_pred             CCCCCCCEE-EEEEEHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHH--HHHHHHCCCEEEEEECCCCCEECCC---CCC
T ss_conf             656997628-9995534489999863278567769998425631577--7766523233899972687422512---111


Q ss_pred             HHHHHHHHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCEE
Q ss_conf             89999999668987003897871789708982144421798999870988554288899986303653044338742111
Q gi|254780662|r  998 FDERKRLFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYI 1077 (1576)
Q Consensus       998 ~~Er~RLf~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYv 1077 (1576)
                      ..+.+++++. +.++.+++......                        ....+.+.    .++..+.|+|        +
T Consensus        78 ~~~~~~~~~~-~~~~~~~~~~~~~~------------------------~~~~~~~~----~~~~~~~dI~--------~  120 (219)
T 1v9l_A           78 VELIQKNKGL-TGPALVELFTTKDN------------------------AEFVKNPD----AIFKLDVDIF--------V  120 (219)
T ss_dssp             THHHHHTTTS-CHHHHHHHHHHTSC------------------------CCCCSSTT----GGGGCCCSEE--------E
T ss_pred             HHHHHHHHHC-CCHHHEEEEECCCC------------------------CEEECCCH----HHCCCCCEEE--------E
T ss_conf             6899998641-30010000002588------------------------37952753----4400450598--------4


Q ss_pred             CCCCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             26898620015210000002588304689985551030767899999739868353313443732440476799986588
Q gi|254780662|r 1078 RAPRENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEVNIKIALASA 1157 (1576)
Q Consensus      1078 ka~~e~~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~EVniKIll~~~ 1157 (1576)
                      +|..++...-         -+...++|++|+||+|..+|+.+.--+..+|+.+.+|...|++||.||.+|-+...     
T Consensus       121 p~a~~~ei~~---------e~a~~~~a~~v~~~an~p~t~~~~~~l~~~gv~v~Pd~~~naggv~~~~~e~~~~~-----  186 (219)
T 1v9l_A          121 PAAIENVIRG---------DNAGLVKARLVVEGANGPTTPEAERILYERGVVVVPDILANAGGVIMSYLEWVENL-----  186 (219)
T ss_dssp             ECSCSSCBCT---------TTTTTCCCSEEECCSSSCBCHHHHHHHHTTTCEEECHHHHSTHHHHHHHHHHHHHH-----
T ss_pred             ECCCCCCCCH---------HHHHCCCCCEEEECCCCCCCHHHHHHHHHCCCEEECHHHHCCCCEEEEHHHHHCCC-----
T ss_conf             1232100336---------55420212568706889888679999987896998868863876023378775201-----


Q ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             77079898899889998789999999
Q gi|254780662|r 1158 MRDGRLTLENRNKLLSSMTSEVVELV 1183 (1576)
Q Consensus      1158 ~~~g~lt~~~Rn~lL~~mtdeV~~lV 1183 (1576)
                       ..-.-+.++=.+-+......+.+.|
T Consensus       187 -~~~~~~~~~v~~~~~~i~~~~~~~v  211 (219)
T 1v9l_A          187 -QWYIWDEEETRKRLENIMVNNVERV  211 (219)
T ss_dssp             -TTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             -2468999999999999999999999


No 3  
>>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} (A:224-445)
Probab=98.92  E-value=1.4e-08  Score=92.71  Aligned_cols=212  Identities=18%  Similarity=0.205  Sum_probs=154.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHH--HCCCCCEEEEEECCCEEEECCCCCCCCCHHHH
Q ss_conf             1011467899999999998089965486459960588633244311--12766208999739436867778813798999
Q gi|254780662|r  924 KMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGM--LLSRKIQLVAAFDHSDIFIDPDPNSETTFDER 1001 (1576)
Q Consensus       924 ~mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgm--Lls~~i~lvaafdh~hif~DP~PD~~~s~~Er 1001 (1576)
                      .++.|+.|++.+++.-.+.+|.+.....+.+.|-    |+|..+-+  |...-.+.++..|+.+..+||+   +.+..+.
T Consensus         4 r~~aTg~gv~~~~~~~~~~~g~~l~~~~v~i~G~----G~vG~~~a~~l~~~g~~~i~~~d~~g~i~~~~---g~~~~~l   76 (222)
T 2bma_A            4 RVEATGYGLVYFVLEVLKSLNIPVEKQTAVVSGS----GNVALYCVQKLLHLNVKVLTLSDSNGYVYEPN---GFTHENL   76 (222)
T ss_dssp             TTTHHHHHHHHHHHHHHHTTTCCGGGCEEEEECS----SHHHHHHHHHHHHTTCEECEEEETTEEEECSS---CCCHHHH
T ss_pred             CCEEEEEEEHHHHHHHHHHCCCCCCCCEEEEECC----CCHHHHHHHHHHHCCCEEEEEECCCCEEEECC---CCCHHHH
T ss_conf             8713676147889999975121658878999834----52689999987640746999986897599358---8888999


Q ss_pred             HHHHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCEECCCC
Q ss_conf             99996689870038978717897089821444217989998709885542888999863036530443387421112689
Q gi|254780662|r 1002 KRLFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRAPR 1081 (1576)
Q Consensus      1002 ~RLf~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYvka~~ 1081 (1576)
                      +++++.. .....+.....+...|++....                          .+.+..+.|.|-+++        .
T Consensus        77 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~If~~s~--------~  121 (222)
T 2bma_A           77 EFLIDLK-EEKKGRIKEYLNHSSTAKYFPN--------------------------EKPWGVPCTLAFPCA--------T  121 (222)
T ss_dssp             HHHHHHH-TTTTCCGGGGGGTCSSCEECSS--------------------------CCTTSSCCSEEEECS--------S
T ss_pred             HHHHHHH-HHCCCEEEEECCCCCCCEECCC--------------------------CCCCCCCEEEEECCC--------C
T ss_conf             9999977-6507567321035676212378--------------------------643666707997677--------7


Q ss_pred             CCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             86200152100000025883046899855510307678999997398683533134437324404767999865887707
Q gi|254780662|r 1082 ENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEVNIKIALASAMRDG 1161 (1576)
Q Consensus      1082 e~~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~EVniKIll~~~~~~g 1161 (1576)
                      ++..+    .+++.....+  +|+++.||+|+.+|++++-.++.+|+.+.+|.+.|++||.+|..|....+...      
T Consensus       122 ~~ei~----~~~a~~~~~~--~~~~~a~~an~~~t~~~~~~lq~nnv~~~Pd~~~na~~v~~~~ie~~~~~~~~------  189 (222)
T 2bma_A          122 QNDVD----LDQAKLLQKN--GCILVGEGANMPSTVDAINLFKSNNIIYCPSKAANAGGVAISGLEMSQNFQFS------  189 (222)
T ss_dssp             TTCBC----SHHHHHHHHT--TCCEEECCSSSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHHHHHHHTTC------
T ss_pred             CHHHH----HHHHHHHHHC--CCEEEECCCCCCCCCHHHHHHHHCCCEEECHHHEECCCEEEEHHHHHHHHHCC------
T ss_conf             31120----5777655503--62799657898888047999997994997714512765454457888865106------


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9898899889998789999999850078
Q gi|254780662|r 1162 RLTLENRNKLLSSMTSEVVELVLRNNYL 1189 (1576)
Q Consensus      1162 ~lt~~~Rn~lL~~mtdeV~~lVL~~n~~ 1189 (1576)
                      +...++=.+-+.+...+++..|++..+.
T Consensus       190 ~~~~~~v~~~i~~~~~~~~~~v~~~a~~  217 (222)
T 2bma_A          190 HWTRETVDEKLKEIMRNIFIACSENALK  217 (222)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8899999999999999999999999998


No 4  
>>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} (A:202-449)
Probab=98.77  E-value=2.4e-08  Score=90.64  Aligned_cols=184  Identities=15%  Similarity=0.086  Sum_probs=137.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC--HHHCCCCCEEEEEECCCEEEECCCCCCCCCHH
Q ss_conf             4310114678999999999980899654864599605886332443--11127662089997394368677788137989
Q gi|254780662|r  922 HKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGN--GMLLSRKIQLVAAFDHSDIFIDPDPNSETTFD  999 (1576)
Q Consensus       922 HK~mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGN--gmLls~~i~lvaafdh~hif~DP~PD~~~s~~  999 (1576)
                      |+-++-|+.|++.+++.-.+..|.++....+.+.|-|.    |..+  .+|.....+.++..|+.+..+||+   +...+
T Consensus         2 ~d~~~~Tg~g~~~~l~~al~~~~~~l~g~~v~i~G~G~----vG~~~A~~l~~~G~~vi~~~d~~G~i~~~~---g~~~~   74 (248)
T 1bgv_A            2 LVRPEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGN----VAWGAAKKLAELGAKAVTLSGPDGYIYDPE---GITTE   74 (248)
T ss_dssp             TTTTTHHHHHHHHHHHHHHHHTTCCSTTCEEEECCSSH----HHHHHHHHHHHHTCEEEEEEETTEEEECTT---CSCSH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCC----HHHHHHHHHHHHCCCEEEEECCCCEEEECC---CCCHH
T ss_conf             98643344235999999999649996897799981682----799999998861650699865885499517---86748


Q ss_pred             HHHHHHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCEECC
Q ss_conf             99999966898700389787178970898214442179899987098855428889998630365304433874211126
Q gi|254780662|r 1000 ERKRLFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRA 1079 (1576)
Q Consensus      1000 Er~RLf~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYvka 1079 (1576)
                      +.++++... .+-.++.....+...|.+....                          -.++..++|.|-++..+-.|  
T Consensus        75 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~--------------------------~~~~~~~~di~~~aa~~~~i--  125 (248)
T 1bgv_A           75 EKINYMLEM-RASGRNKVQDYADKFGVQFFPG--------------------------EKPWGQKVDIIMPCATQNDV--  125 (248)
T ss_dssp             HHHHHHHHH-HHHCCCCTHHHHHHHTCEEEET--------------------------CCGGGSCCSEEECCSCTTCB--
T ss_pred             HHHHHHHHH-HCCCCCCCHHHHHCCCCEECCC--------------------------CCCCCCCCEEEEECCCCCCC--
T ss_conf             899999985-0114664022232058433243--------------------------32356786099837876645--


Q ss_pred             CCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHH-HHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             89862001521000000258830468998555103076789-999973986835331344373244047679998
Q gi|254780662|r 1080 PRENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQAR-VVYSLNGGRINSDAIDNSGGVNCSDLEVNIKIA 1153 (1576)
Q Consensus      1080 ~~e~~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~R-ie~a~~Gg~intDaidNsaGV~~Sd~EVniKIl 1153 (1576)
                          +.      ++.-++...  +|++|.||+|..+|+.++ +.+..+|..+++|...|++||.+|.+|-+-.+.
T Consensus       126 ----~~------~~a~~l~~~--~~~~i~~~an~~~~~~~~~~~l~~~gvlv~P~~~~naggv~~~~~e~~~~~~  188 (248)
T 1bgv_A          126 ----DL------EQAKKIVAN--NVKYYIEVANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQNSE  188 (248)
T ss_dssp             ----CH------HHHHHHHHT--TCCEEECCSSSCBCHHHHHHHHHCTTCEEECHHHHTTHHHHHHHHHHHHHHH
T ss_pred             ----CH------HHHHHHHCC--CCEEEECCCCCCCCCHHHHHHHHHCCEEEECHHHHCCCCHHHHHHHHHHHHC
T ss_conf             ----43------454344306--8249973788876746789999849979976488427258787999987540


No 5  
>>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus dsm 3638} (A:183-393)
Probab=98.59  E-value=1.3e-06  Score=75.35  Aligned_cols=191  Identities=25%  Similarity=0.216  Sum_probs=138.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCH--HHCCC-CCEEEEEECCCEEEECCCCCCCCCH
Q ss_conf             43101146789999999999808996548645996058863324431--11276-6208999739436867778813798
Q gi|254780662|r  922 HKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNG--MLLSR-KIQLVAAFDHSDIFIDPDPNSETTF  998 (1576)
Q Consensus       922 HK~mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNg--mLls~-~i~lvaafdh~hif~DP~PD~~~s~  998 (1576)
                      |+..+.|+.|+..+++.-.+.+|.+.- ...+|+.+|  .|.|.++-  +|+.+ ..++++..|.++..++++   +.+.
T Consensus         2 ~d~~~~T~~gv~~~~~~al~~~~~~~~-~~~~v~i~G--~G~VG~~~~~~L~~~~~~~vv~~~d~~~~i~~~~---g~d~   75 (211)
T 1gtm_A            2 LGRIEATARGASYTIREAAKVLGWDTL-KGKTIAIQG--YGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPD---GLNA   75 (211)
T ss_dssp             TTTTTHHHHHHHHHHHHHHHHTTCSCS-TTCEEEEEC--CSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEE---EECH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCC-CCCEEEECC--CCHHHHHHHHHHHHCCCEEEEEEECCCCEEECCC---CCCH
T ss_conf             775233569999999999998289886-797799708--8746899999997339748999725785276587---6789


Q ss_pred             HHHHHHHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCEEC
Q ss_conf             99999996689870038978717897089821444217989998709885542888999863036530443387421112
Q gi|254780662|r  999 DERKRLFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIR 1078 (1576)
Q Consensus       999 ~Er~RLf~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYvk 1078 (1576)
                      .+..+...-. ..+.++.....                              ..++    .++..++|.+.+++.+.-+ 
T Consensus        76 ~~~~~~~~~~-~~~~~~~~~~~------------------------------~~~~----~~~~~~~dv~~~~a~~~~i-  119 (211)
T 1gtm_A           76 DEVLKWKNEH-GSVKDFPGATN------------------------------ITNE----ELLELEVDVLAPAAIEEVI-  119 (211)
T ss_dssp             HHHHHHHHHH-SSSTTCTTSEE------------------------------ECHH----HHHHSCCSEEEECSCSCCB-
T ss_pred             HHHHHHHHHC-CCEECCCCCEE------------------------------CCCC----CCCCCCCEEEEECCCCCCC-
T ss_conf             9999998622-45001467501------------------------------0443----1233461088323420315-


Q ss_pred             CCCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             68986200152100000025883046899855510307678999997398683533134437324404767999865887
Q gi|254780662|r 1079 APRENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEVNIKIALASAM 1158 (1576)
Q Consensus      1079 a~~e~~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~EVniKIll~~~~ 1158 (1576)
                             .         ..+..-++++.|++++|-.+++...-++..+|+.+..|+..|.+|+.+|..||.-..    .+
T Consensus       120 -------~---------~~~~~~~~~~~vv~~an~~~~~~~~~~l~~~gv~~~~~~~v~ag~~i~~~~ei~~~~----gi  179 (211)
T 1gtm_A          120 -------T---------KKNADNIKAKIVAEVANGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFEWVQNI----TG  179 (211)
T ss_dssp             -------C---------TTGGGGCCCSEEECCSSSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHHHHHHH----HC
T ss_pred             -------C---------HHHHHHHHHCEEEEECCCCCCHHHHHHHHHCCEEEECCHHHCCCCEEEEHHHHHHHH----CC
T ss_conf             -------7---------867623110424752589999789999987893997825534876566699987543----04


Q ss_pred             HCCCCCHHHHHHHHHHHHHHH
Q ss_conf             707989889988999878999
Q gi|254780662|r 1159 RDGRLTLENRNKLLSSMTSEV 1179 (1576)
Q Consensus      1159 ~~g~lt~~~Rn~lL~~mtdeV 1179 (1576)
                      .+|  |   -|.+|..|++++
T Consensus       180 ~~g--T---~n~Il~~~~~~~  195 (211)
T 1gtm_A          180 YYW--T---IEEVRERLDKKM  195 (211)
T ss_dssp             CCC--C---HHHHHHHHHHHH
T ss_pred             CCC--C---HHHHHHHHHHHH
T ss_conf             788--9---999999999999


No 6  
>>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} (A:1-137)
Probab=98.57  E-value=5.7e-07  Score=78.49  Aligned_cols=115  Identities=22%  Similarity=0.248  Sum_probs=87.6

Q ss_pred             CCCCCEEEEEECCC--EEEE---EEECCCCCCCEEEE--ECCHHHHHHHHHHHHHHHHHCCC--CCCCCCCCEEEEECCC
Q ss_conf             88785699998386--5799---84054233040420--08857888889998998453287--4288875327871689
Q gi|254780662|r  760 TDELHREIFVYGVE--VEGV---HLRCGKIARGGLRW--SDRAADYRTEVLGLVRAQKVKNA--VIVPVGAKGGFYPKRL  830 (1576)
Q Consensus       760 ~p~P~~eifv~sp~--~eGv---HlR~g~vARGGlRw--SdR~edfrtEvlgL~kaQ~vKN~--vIvp~GaKGgfv~k~~  830 (1576)
                      .+.|...++++++.  +.|+   |-+..-.|.||+|+  +...|++.+|++.|+++++.|||  .|+-+|+|||+.+.  
T Consensus         9 ~~~~e~v~~~~~~~~~~~~~~~~h~~~~Gpa~GG~R~~~~~s~e~~l~dv~~LA~~Mt~K~al~~lp~GGgKgvI~~~--   86 (137)
T 1leh_A            9 KYDYEQLVFCQDEASGLKAVIAIHDTTLGPALGGARMWTYNAEEEAIEDALRLARGMTYKNAAAGLNLGGGKTVIIGD--   86 (137)
T ss_dssp             HHTCCEEEEEEETTTTEEEEEEEEECSSSSEECCEEEECCSCHHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEEEESC--
T ss_pred             CCCCEEEEEEECCCCCCEEEEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC--
T ss_conf             269718999846877967999992599887430497147897777899999999999999998289988748999679--


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCH-HHHHHHHHHHHCCCC
Q ss_conf             98899899999999999999989887762568884028831030538986799817788832-689999999880899
Q gi|254780662|r  831 PSEGRRDEIIKIGREAYKTYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTAT-FSDTANILAQEAKFW  907 (1576)
Q Consensus       831 ~~~~~r~~~~~e~~~~y~~fi~~lLditDN~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~-fsD~An~ia~~~gfw  907 (1576)
                      |...++.+    ....++.|++.|-+.                        .+.|+|-||.. -++|.   ..+++|-
T Consensus        87 p~~~~~~e----l~~~~~~~v~~L~~~------------------------~i~g~D~gt~~~dm~~i---~~~~~~~  133 (137)
T 1leh_A           87 PFADKNED----MFRALGRFIQGLNGR------------------------YITAEDVGTTVDDMDLI---HQETDYV  133 (137)
T ss_dssp             TTTTCCHH----HHHHHHHHHHTTTTS------------------------EEBCBCTTCCHHHHHHH---HTTCSCB
T ss_pred             CCCCCHHH----HHHHHHHHHHHHCCC------------------------CCCCCCCCCCHHHHHHH---HHHHHHC
T ss_conf             98678899----999999999985687------------------------63467667666999999---8665410


No 7  
>>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus dsm 3638} (A:1-182,A:394-419)
Probab=97.42  E-value=0.0072  Score=42.07  Aligned_cols=138  Identities=20%  Similarity=0.196  Sum_probs=81.8

Q ss_pred             EEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCC--CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             79984054233040420088578888899989984532874--2888753278716899889989999999999999998
Q gi|254780662|r  775 EGVHLRCGKIARGGLRWSDRAADYRTEVLGLVRAQKVKNAV--IVPVGAKGGFYPKRLPSEGRRDEIIKIGREAYKTYVR  852 (1576)
Q Consensus       775 eGvHlR~g~vARGGlRwSdR~edfrtEvlgL~kaQ~vKN~v--Ivp~GaKGgfv~k~~~~~~~r~~~~~e~~~~y~~fi~  852 (1576)
                      .-+|=.-.--+-||+|++.-..  ..|++.|+..+..||+.  ++=+|+|||+.+.  |..-+..    |-.+-.+.|.+
T Consensus        57 rv~Hn~~~GPakGGiR~~~~vt--~~ev~~LA~~MT~K~Al~~lp~GGgKggI~~d--P~~~s~~----e~e~i~r~f~~  128 (208)
T 1gtm_A           57 RVQHNWARGPTKGGIRWHPEET--LSTVKALAAWMTWKTAVMDLPYGGGKGGIIVD--PKKLSDR----EKERLARGYIR  128 (208)
T ss_dssp             EEEEECTTSSEECCEEECTTCC--HHHHHHHHHHHHHHHHHTTCSCEEEEEEEECC--GGGSCHH----HHHHHHHHHHH
T ss_pred             EEEECCCCCCCCCCEECCCCCC--HHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC--CCCCCHH----HHHHHHHHHHH
T ss_conf             9996588788867434068779--99999999987898875048988844699579--6447989----99999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCH-HHHHH-HHHHHHCCCCCCC-HHCCCCCCCCCCCCCCCCH
Q ss_conf             9887762568884028831030538986799817788832-68999-9999880899850-1105699998843101146
Q gi|254780662|r  853 ALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTAT-FSDTA-NILAQEAKFWLDD-AFASGGSMGYDHKKMGITA  929 (1576)
Q Consensus       853 ~lLditDN~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~-fsD~A-n~ia~~~gfwlgd-AFaSGgs~GydHK~mGITa  929 (1576)
                      .|-.+.                  |.+ .-|-|+|=||-. -++|. -+...-.|.|-++ +-.+|++    --.-|-.-
T Consensus       129 ~l~~l~------------------G~~-~dv~apDvGt~~~dMa~i~d~~~~~~g~~~~~~g~~Tgkp----v~~gG~~~  185 (208)
T 1gtm_A          129 AIYDVI------------------SPY-EDIPAPDVYTNPQIMAWMMDEYETISRRKTPAFGIITGKP----LSIGGHMR  185 (208)
T ss_dssp             HHGGGC------------------BTT-TEECCBCTTCCHHHHHHHHHHHHHHHTTSSCGGGGCSSCC----GGGTCCHH
T ss_pred             HHHHCC------------------CCC-CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC----CCCCCCHH
T ss_conf             974436------------------986-6606775777877737888888886087556667768998----66788999


Q ss_pred             HHH-HHHHHHHHHHC
Q ss_conf             789-99999999980
Q gi|254780662|r  930 RGA-WETVKRHFREM  943 (1576)
Q Consensus       930 rGa-w~~v~rhfrel  943 (1576)
                      -.| -+.|+|.+..|
T Consensus       186 ~~~~~~~~~~~~~~~  200 (208)
T 1gtm_A          186 DAAYVVAVQRVYQAM  200 (208)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999999999


No 8  
>>1hwx_A GDH, glutamate dehydrogenase; allostery, abortive complex, oxidoreductase; HET: GLU GTP NAI; 2.50A {Bos taurus} (A:242-372)
Probab=97.37  E-value=0.0017  Score=47.67  Aligned_cols=125  Identities=23%  Similarity=0.137  Sum_probs=88.5

Q ss_pred             EEEEEECCCCCCCCCC--HHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEEE
Q ss_conf             4599605886332443--11127662089997394368677788137989999999668987003897871789708982
Q gi|254780662|r  952 FTVAGVGDMSGDVFGN--GMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRKVLSKGGMIISR 1029 (1576)
Q Consensus       952 fTvvgiGdmsGDVfGN--gmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~lprssw~dyd~~liS~gGgv~~r 1029 (1576)
                      -||+-.|  .|.|...  -+|...-+|+++..|..+..++|+   +.+..+..++.+..++....... ..         
T Consensus         4 ~rV~i~G--~G~VG~~~a~~L~~~G~kvv~v~d~~G~i~~~~---G~d~~~l~~~~~~~~~~~~~~~~-~~---------   68 (131)
T 1hwx_A            4 KTFAVQG--FGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPD---GIDPKELEDFKLQHGTILGFPKA-KI---------   68 (131)
T ss_dssp             CEEEEEC--CSHHHHHHHHHHHHTTCEEEEEEETTEEECCTT---CCCHHHHHHHHHTTSSSTTCTTS-CB---------
T ss_pred             CEEEEEC--CCHHHHHHHHHHHHCCCEEEEEECCCCCEECCC---CCCHHHHHHHHHHCCCEECCCCC-CC---------
T ss_conf             6799979--871558999777735747999974788354475---42326799999961973215665-44---------


Q ss_pred             CCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCEECCCCCEEEEEEEE
Q ss_conf             14442179899987098855428889998630365304433874211126898620015210000002588304689985
Q gi|254780662|r 1030 KEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRAPRENNADIGDKGNNILRVTADKVRAKVIGE 1109 (1576)
Q Consensus      1030 ~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYvka~~e~~~~vgd~and~~rv~g~~lr~kvi~E 1109 (1576)
                                            .    ...++..++|+|-++.        .+.-. .+        -++..+++|+|+|
T Consensus        69 ----------------------~----~~~~~~~~~dili~~a--------~~~~i-~~--------e~a~~~~a~~i~~  105 (131)
T 1hwx_A           69 ----------------------Y----EGSILEVDCDILIPAA--------SEKQL-TK--------SNAPRVKAKIIAE  105 (131)
T ss_dssp             ----------------------C----CSCGGGCCCSEEEECS--------SSSCB-CT--------TTGGGCCCSEEEC
T ss_pred             ----------------------C----CCCCCCCCCCEEEECC--------CCCCC-CH--------HHHHHCCCEEEEC
T ss_conf             ----------------------6----8530033444870023--------45657-78--------6785358749981


Q ss_pred             CCCCCCCHHHHHHHHHCCCEEECCC
Q ss_conf             5510307678999997398683533
Q gi|254780662|r 1110 GANLGLTQQARVVYSLNGGRINSDA 1134 (1576)
Q Consensus      1110 G~NLg~Tq~~Rie~a~~Gg~intDa 1134 (1576)
                      |+|-.+|+++...+..+|+.+.+|.
T Consensus       106 gan~~~~~~~~~~l~~~gilv~Pdi  130 (131)
T 1hwx_A          106 GANGPTTPQADKIFLERNIMVIPDL  130 (131)
T ss_dssp             CSSSCBCHHHHHHHHHTTCEEECHH
T ss_pred             CCCCCCCHHHHHHHHHCCCEEECCH
T ss_conf             6889889789999998898896812


No 9  
>>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} (A:1-223,A:446-470)
Probab=97.37  E-value=0.0074  Score=41.99  Aligned_cols=122  Identities=19%  Similarity=0.087  Sum_probs=82.5

Q ss_pred             EEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCC--CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             579984054233040420088578888899989984532874--288875327871689988998999999999999999
Q gi|254780662|r  774 VEGVHLRCGKIARGGLRWSDRAADYRTEVLGLVRAQKVKNAV--IVPVGAKGGFYPKRLPSEGRRDEIIKIGREAYKTYV  851 (1576)
Q Consensus       774 ~eGvHlR~g~vARGGlRwSdR~edfrtEvlgL~kaQ~vKN~v--Ivp~GaKGgfv~k~~~~~~~r~~~~~e~~~~y~~fi  851 (1576)
                      +..+|=.-.--+.||+|+..-.  =..|++.|+..+..||++  +|=+|+|||+.+.  |..-++.    |..+.++.|+
T Consensus       100 ~rvqHn~~lGPakGGiR~~p~v--t~~ev~~LA~~MT~K~Al~gLp~GGgKggI~~d--P~~~s~~----El~r~~~~fv  171 (248)
T 2bma_A          100 FRVQYNSALGPYKGGLRFHPSV--NLSIVKFLGFEQIFKNSLTGLSMGGGKGGSDFD--PKGKSDN----EILKFCQAFM  171 (248)
T ss_dssp             EEEEEECSSSSEEEEEEECTTC--CHHHHHHHHHHHHHHHHHTCSSCEEEEEEESCC--CTTCCHH----HHHHHHHHHH
T ss_pred             EEEEECCCCCCCCCCEEECCCC--CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC--CCCCCHH----HHHHHHHHHH
T ss_conf             9999768767777872775445--378999888888998875178867876599658--9899989----9999999987


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCH-HHHHHHHHHHH-CCCCCCCHHCCCCC---CCCCCCC
Q ss_conf             89887762568884028831030538986799817788832-68999999988-08998501105699---9988431
Q gi|254780662|r  852 RALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTAT-FSDTANILAQE-AKFWLDDAFASGGS---MGYDHKK  924 (1576)
Q Consensus       852 ~~lLditDN~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~-fsD~An~ia~~-~gfwlgdAFaSGgs---~GydHK~  924 (1576)
                      +.|=.+.-   .     -.           =+-|+|=||.. -+.|......+ .|...  +-.+|++   .|||-.+
T Consensus       172 ~~L~~~iG---p-----d~-----------Dipa~Di~t~~~em~~i~d~y~~~~g~~p--~~~TGk~v~~GG~~~~~  228 (248)
T 2bma_A          172 NELYRHIG---P-----CT-----------DVPAGDIGVGGREIGYLYGQYKKIVNSFN--GTLTGKNVKWGGYDLQA  228 (248)
T ss_dssp             HHHGGGCB---T-----TT-----------EEEECCSSCCHHHHHHHHHHHHHHHCCCS--CSSSSCCGGGTCSCHHH
T ss_pred             HHHCCCCC---C-----EE-----------EECCCCCCCCHHHHHHHHHHHHHCCCCCE--EEECCCCHHHCCCCHHH
T ss_conf             76346789---7-----15-----------73578756327889899997642168623--56558965538999999


No 10 
>>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} (A:1-176,A:396-421)
Probab=97.30  E-value=0.004  Score=44.38  Aligned_cols=135  Identities=20%  Similarity=0.250  Sum_probs=79.8

Q ss_pred             EEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCC--CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             579984054233040420088578888899989984532874--288875327871689988998999999999999999
Q gi|254780662|r  774 VEGVHLRCGKIARGGLRWSDRAADYRTEVLGLVRAQKVKNAV--IVPVGAKGGFYPKRLPSEGRRDEIIKIGREAYKTYV  851 (1576)
Q Consensus       774 ~eGvHlR~g~vARGGlRwSdR~edfrtEvlgL~kaQ~vKN~v--Ivp~GaKGgfv~k~~~~~~~r~~~~~e~~~~y~~fi  851 (1576)
                      +.-+|=.-.-.+.||+|++.-.  -..|++.|+..+.+||++  ++=+|+|||+.+.  |..-+.    .|..+-.+.|+
T Consensus        57 ~rv~Hn~~~GPakGGiR~~~~~--t~~ev~~LA~~MT~K~Al~~lp~GGgKgGI~~d--P~~~s~----~e~erl~r~f~  128 (202)
T 1v9l_A           57 YRVQHCDVLGPYKGGVRFHPEV--TLADDVALAILMTLKNSLAGLPYGGAKGAVRVD--PKKLSQ----RELEELSRGYA  128 (202)
T ss_dssp             EEEEEECSSSSEEEEEECCTTC--CHHHHHHHHHHHHHHHHHTTCSCCEEEEEECSC--GGGSCH----HHHHHHHHHHH
T ss_pred             EEEEECCCCCCCCCCEECCCCC--CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC--CCCCCH----HHHHHHHHHHH
T ss_conf             9999768878775515516877--899999999998998876138768886268368--655556----78999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCEECCCCCCEE-EEECCCCCCH--HHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCC
Q ss_conf             8988776256888402883103053898679-9817788832--689999999880899850110569999884310114
Q gi|254780662|r  852 RALLSITDNFEGQEIIHPDNTVCLDGNDPYF-VVAADKGTAT--FSDTANILAQEAKFWLDDAFASGGSMGYDHKKMGIT  928 (1576)
Q Consensus       852 ~~lLditDN~~~g~vv~p~~vv~~d~~d~yl-vvaaDkgTa~--fsD~An~ia~~~gfwlgdAFaSGgs~GydHK~mGIT  928 (1576)
                      +.|=.+.                    .||. |.|+|=||-.  +.-++.+.+.-.|..-.. -.+|++        |-|
T Consensus       129 ~~l~~li--------------------G~~~dvpapDvGt~~~dM~~i~de~~~~~g~~~~~-~~TGkP--------~~~  179 (202)
T 1v9l_A          129 RAIAPLI--------------------GDVVDIPAPDVGTNAQIMAWMVDEYSKIKGYNVPG-VFTSKP--------GWT  179 (202)
T ss_dssp             HHHGGGC--------------------BTTTEEEECCTTCCHHHHHHHHHHHHHHHTSCCGG-GSCSCC--------SCC
T ss_pred             HHHHHCC--------------------CCCCEECCCCCCCCHHHHHHHHCCEEEEECCCCCC-CCCCCC--------CCC
T ss_conf             9864047--------------------87514427875046656112324030332110011-235777--------999


Q ss_pred             HHHH--HHHHHHHHHHCCC
Q ss_conf             6789--9999999998089
Q gi|254780662|r  929 ARGA--WETVKRHFREMDI  945 (1576)
Q Consensus       929 arGa--w~~v~rhfrelg~  945 (1576)
                      -|-|  -...+|.+..|.|
T Consensus       180 ~~~~~~~~~~~~~~~~~~~  198 (202)
T 1v9l_A          180 MRDAAIVTALERIYNAMKI  198 (202)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             8999999999999999996


No 11 
>>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} (A:1-144)
Probab=97.24  E-value=0.0075  Score=41.92  Aligned_cols=125  Identities=18%  Similarity=0.031  Sum_probs=82.0

Q ss_pred             CCCCCCCCEEEEEECCC-----EEEEEEECCCCCCCEEEEE--CCHHHHHHHHHHHHHHHHHCCCC--CCCCCCCEEEEE
Q ss_conf             88888785699998386-----5799840542330404200--88578888899989984532874--288875327871
Q gi|254780662|r  757 SVGTDELHREIFVYGVE-----VEGVHLRCGKIARGGLRWS--DRAADYRTEVLGLVRAQKVKNAV--IVPVGAKGGFYP  827 (1576)
Q Consensus       757 ~~p~p~P~~eifv~sp~-----~eGvHlR~g~vARGGlRwS--dR~edfrtEvlgL~kaQ~vKN~v--Ivp~GaKGgfv~  827 (1576)
                      .+|...|...++++.+.     +..+|=.-.--|-||+|+.  ...++.-++++.|+....+||++  |+=+|+|||+.+
T Consensus         4 ~~~~~~~e~v~~~~d~~~g~~~~~~~h~~~~GPa~GG~R~~~~~s~~eal~Dv~~La~~MT~K~Al~~lp~GGgKg~I~~   83 (144)
T 1c1d_A            4 SALNWDGEMTVTRFDAMTGAHFVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIAL   83 (144)
T ss_dssp             HHHCCCSSEEEEEEETTTTEEEEEEEEECSSSSEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEEEEC
T ss_pred             CCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC
T ss_conf             45588984799985567675489999369988867748704889989999999999999999999708998874658833


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCH-HHHHHHHHHHHCCC
Q ss_conf             68998899899999999999999989887762568884028831030538986799817788832-68999999988089
Q gi|254780662|r  828 KRLPSEGRRDEIIKIGREAYKTYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTAT-FSDTANILAQEAKF  906 (1576)
Q Consensus       828 k~~~~~~~r~~~~~e~~~~y~~fi~~lLditDN~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~-fsD~An~ia~~~gf  906 (1576)
                      ... .....+.-++.-.+.|-.+|+.|.+.                        .+.|+|=||.. -++|.   ..++++
T Consensus        84 dp~-~~~~~~~e~e~l~r~~~~~l~~l~g~------------------------~i~a~Dvgt~~~dM~~i---~~~~~~  135 (144)
T 1c1d_A           84 PAP-RHSIDPSTWARILRIHAENIDKLSGN------------------------YWTGPDVNTNSADMDTL---NDTTEF  135 (144)
T ss_dssp             SSC-GGGCCHHHHHHHHHHHHHHHHHTTTS------------------------EEEEECTTCCHHHHHHH---HHHCSC
T ss_pred             CCC-CCCCCHHHHHHHHHHHHHHHHHCCCC------------------------CCCCCCCCCCHHHHHHH---HHHCCC
T ss_conf             885-46558789999999999973002323------------------------32035678878999999---755273


Q ss_pred             CCC
Q ss_conf             985
Q gi|254780662|r  907 WLD  909 (1576)
Q Consensus       907 wlg  909 (1576)
                      =-|
T Consensus       136 vtG  138 (144)
T 1c1d_A          136 VFG  138 (144)
T ss_dssp             BCC
T ss_pred             CCC
T ss_conf             245


No 12 
>>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} (A:1-201)
Probab=97.05  E-value=0.018  Score=38.66  Aligned_cols=116  Identities=18%  Similarity=0.097  Sum_probs=74.9

Q ss_pred             EEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCC--CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             579984054233040420088578888899989984532874--288875327871689988998999999999999999
Q gi|254780662|r  774 VEGVHLRCGKIARGGLRWSDRAADYRTEVLGLVRAQKVKNAV--IVPVGAKGGFYPKRLPSEGRRDEIIKIGREAYKTYV  851 (1576)
Q Consensus       774 ~eGvHlR~g~vARGGlRwSdR~edfrtEvlgL~kaQ~vKN~v--Ivp~GaKGgfv~k~~~~~~~r~~~~~e~~~~y~~fi  851 (1576)
                      +..+|=.-.--|.||+|+..-...  .|++.|+..+..||++  ++=+|+|||+.+.  |...++.    |..+.++.|+
T Consensus        77 ~rv~hn~~~GPakGGiR~~~~~~~--~ev~~La~~MT~K~Al~~lp~GGgKggI~~d--P~~~s~~----el~r~~~~f~  148 (201)
T 1bgv_A           77 YRVQFNGAIGPYKGGLRFAPSVNL--SIMKFLGFEQAFKDSLTTLPMGGAKGGSDFD--PNGKSDR----EVMRFCQAFM  148 (201)
T ss_dssp             EEEEEECSSSSEEEEEEECTTCCH--HHHHHHHHHHHHHHHHTSSSCCEEEEEESCC--CTTCCHH----HHHHHHHHHH
T ss_pred             EEEEECCCCCCCCCCEEECCCCHH--HHHHHHHHHHHHHHHHCCCCCCCCCEEEECC--CCCCCHH----HHHHHHHHHH
T ss_conf             999964876765676266520128--9999999888887644167767876599468--8899999----9999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCH-HHHHHHHHHHH-CCCCCCCHHCCCCC
Q ss_conf             89887762568884028831030538986799817788832-68999999988-08998501105699
Q gi|254780662|r  852 RALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTAT-FSDTANILAQE-AKFWLDDAFASGGS  917 (1576)
Q Consensus       852 ~~lLditDN~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~-fsD~An~ia~~-~gfwlgdAFaSGgs  917 (1576)
                      +.|-.++                  |.|- =+-|+|=||-. =+.|.-..... .|.+-. +-.+|++
T Consensus       149 ~~l~~~i------------------G~d~-di~a~Dm~t~~~~m~~i~~~~~~~~g~~~~-~~~Tgkg  196 (201)
T 1bgv_A          149 TELYRHI------------------GPDI-DVPAGDLGVGAREIGYMYGQYRKIVGGFYN-GVLTGKA  196 (201)
T ss_dssp             HHHGGGC------------------BTTT-EEEECBTTBCHHHHHHHHHHHHHHHTSCCG-GGSSSCC
T ss_pred             HHHCCCC------------------CCCC-CCCHHHCCCCHHHHHHHHHHCCCCCCCCCC-CCCCCCC
T ss_conf             8745335------------------7887-768787183298888998620013444322-5566886


No 13 
>>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} (A:33-180)
Probab=96.92  E-value=0.012  Score=40.01  Aligned_cols=116  Identities=22%  Similarity=0.144  Sum_probs=70.5

Q ss_pred             EEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCC--CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             579984054233040420088578888899989984532874--288875327871689988998999999999999999
Q gi|254780662|r  774 VEGVHLRCGKIARGGLRWSDRAADYRTEVLGLVRAQKVKNAV--IVPVGAKGGFYPKRLPSEGRRDEIIKIGREAYKTYV  851 (1576)
Q Consensus       774 ~eGvHlR~g~vARGGlRwSdR~edfrtEvlgL~kaQ~vKN~v--Ivp~GaKGgfv~k~~~~~~~r~~~~~e~~~~y~~fi  851 (1576)
                      +..+|=.-.--|.||+|++.-..  ..|++.|++.+.+||++  ++=+|+|||+.+.  |...+.+    |..+..+.|+
T Consensus        24 ~r~~h~~~~GPa~GGiR~~~~~s--~~ev~~LA~~MT~K~Al~~lp~GGgKggI~~d--P~~~~~~----e~~r~~~~f~   95 (148)
T 2tmg_A           24 YRVQHNVARGPAKGGIRYHPDVT--LDEVKALAFWMTWKTAVMNLPFGGGKGGVRVD--PKKLSRR----ELERLSRRFF   95 (148)
T ss_dssp             EEEEEECTTSSEECCEEEESSCC--HHHHHHHHHHHHHHHHHHTCSCCEEEEEEECC--GGGSCHH----HHHHHHHHHH
T ss_pred             EEEEECCCCCCCCCEEEECCCCC--HHHHHHHHHHHHHHHHHCCCCCCCCCEEEECC--CCCCCHH----HHHHHHHHHH
T ss_conf             89997798788766043168788--99999999998887601357889876599677--6668878----8999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCH-HHHHHHHHHHHCCCCCCC-HHCCCCC
Q ss_conf             89887762568884028831030538986799817788832-689999999880899850-1105699
Q gi|254780662|r  852 RALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTAT-FSDTANILAQEAKFWLDD-AFASGGS  917 (1576)
Q Consensus       852 ~~lLditDN~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~-fsD~An~ia~~~gfwlgd-AFaSGgs  917 (1576)
                      +.|-.+.                  |.+ .-+.|+|=||-. -++|....- .|..+..| +-.+|++
T Consensus        96 ~~l~~l~------------------G~~-~~i~a~Dvgt~~~dM~~i~~~~-~~~~g~~~~~~~Tgk~  143 (148)
T 2tmg_A           96 REIQVII------------------GPY-NDIPAPDVNTNADVIAWYMDEY-EMNVGHTVLGIVTGKP  143 (148)
T ss_dssp             HHTGGGC------------------BTT-TEECCBCTTCCHHHHHHHHHHH-HHHHSSCCCCSCSSCC
T ss_pred             HHHHHCC------------------CCC-EEEECCCCCCCHHHHHHHCCCC-CCCCCCCEEEEECCCC
T ss_conf             9985167------------------885-4750565445765641112442-2124762145770788


No 14 
>>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCSG, protein structure initiative, PSI; 2.61A {Thermotoga maritima MSB8} (A:168-323)
Probab=96.75  E-value=0.0061  Score=42.70  Aligned_cols=146  Identities=16%  Similarity=0.121  Sum_probs=100.4

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHC
Q ss_conf             46789999999999808996548645996058863324431112766208999739436867778813798999999966
Q gi|254780662|r  928 TARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDS 1007 (1576)
Q Consensus       928 TarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~l 1007 (1576)
                      |+.|+..+++.-.|..|.++....+-+.|.|.+..=+.  .+|...-.+.++..|..+...||....... .........
T Consensus         4 Tg~gv~~~~~~a~~~~~~~l~~~~v~v~G~G~vG~~~a--~~l~~~Ga~~i~v~d~~g~~~~~~~~~~~~-~~~~~~~~~   80 (156)
T 1vl6_A            4 TAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIV--KFLLDLGVKNVVAVDRKGILNENDPETCLN-EYHLEIARI   80 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCCTTTCEEEEECCSHHHHHHH--HHHHHHTCCEEEEEETTEECCTTSGGGCSS-HHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHH--HHHHHHCCCCEEEEEEEEEEECCCCCCCCC-HHHHHHHHH
T ss_conf             78899999999998607874434899954637889999--999984786159995011675588644411-778998776


Q ss_pred             CCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCEECCCCCCCCCC
Q ss_conf             89870038978717897089821444217989998709885542888999863036530443387421112689862001
Q gi|254780662|r 1008 PSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRAPRENNADI 1087 (1576)
Q Consensus      1008 prssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYvka~~e~~~~v 1087 (1576)
                      ..+.+                                     ...+.    .++..++|+|-+++        .+.-.. 
T Consensus        81 ~~~~~-------------------------------------~~~~~----~~~~~~~DIlip~a--------~~~~i~-  110 (156)
T 1vl6_A           81 TNPER-------------------------------------LSGDL----ETALEGADFFIGVS--------RGNILK-  110 (156)
T ss_dssp             SCTTC-------------------------------------CCSCH----HHHHTTCSEEEECS--------CSSCSC-
T ss_pred             HHHCC-------------------------------------CCCCH----HHHCCCCCEEEECC--------CCCCCC-
T ss_conf             20011-------------------------------------10017----76425872564214--------567476-


Q ss_pred             CCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEE----CCC
Q ss_conf             52100000025883046899855510307678999997398683----533
Q gi|254780662|r 1088 GDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRIN----SDA 1134 (1576)
Q Consensus      1088 gd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~in----tDa 1134 (1576)
                              .-+.+.+.||.|+|++|-.+|+.+.-++-.+|+.+.    .|+
T Consensus       111 --------~e~~~~~~~r~Iv~~an~P~~~~~~~~l~~~g~~ivatG~pd~  153 (156)
T 1vl6_A          111 --------PEWIKKXSRKPVIFALANPVPEIDPELAREAGAFIVATGRSDH  153 (156)
T ss_dssp             --------HHHHTTSCSSCEEEECCSSSCSSCHHHHHHTTCSEEEESCTTS
T ss_pred             --------HHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCEEEECCCCCC
T ss_conf             --------9888505899889982697244555335424959997698078


No 15 
>>1hwx_A GDH, glutamate dehydrogenase; allostery, abortive complex, oxidoreductase; HET: GLU GTP NAI; 2.50A {Bos taurus} (A:1-207,A:475-501)
Probab=95.79  E-value=0.032  Score=36.36  Aligned_cols=143  Identities=22%  Similarity=0.198  Sum_probs=85.3

Q ss_pred             EEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCC--CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             984054233040420088578888899989984532874--288875327871689988998999999999999999898
Q gi|254780662|r  777 VHLRCGKIARGGLRWSDRAADYRTEVLGLVRAQKVKNAV--IVPVGAKGGFYPKRLPSEGRRDEIIKIGREAYKTYVRAL  854 (1576)
Q Consensus       777 vHlR~g~vARGGlRwSdR~edfrtEvlgL~kaQ~vKN~v--Ivp~GaKGgfv~k~~~~~~~r~~~~~e~~~~y~~fi~~l  854 (1576)
                      +|=.-.--+-||+|+..-..  ..|++.|+..+..||+.  ++=+|+|||+.+.  |..-+++    |-.+.++.|+..|
T Consensus        81 ~Hn~~lGPakGGiR~~p~vt--~~ev~~LA~~MT~K~AlaglP~GGgKggI~~d--P~~~s~~----Eler~~r~fv~~L  152 (234)
T 1hwx_A           81 QHSHQRTPCKGGIRYSTDVS--VDEVKALASLMTYKCAVVDVPFGGAKAGVKIN--PKNYTDE----DLEKITRRFTMEL  152 (234)
T ss_dssp             ECCCSSSSEEEEEEECTTCC--HHHHHHHHHHHHHHHHHTTCCCEEEEEEECCC--GGGSCHH----HHHHHHHHHHHHH
T ss_pred             EECCCCCCCCCCEECCCCCC--HHHHHHHHHHHHHHHHHCCCCCCCCCEEEECC--CCCCCHH----HHHHHHHHHHHHH
T ss_conf             97798887756244468789--99999999998999986089987705588459--9899999----9999999999996


Q ss_pred             HHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCH-HHHHHHHHHHHC-CCCCCC--HHCCCCC---CCCCCCCCCC
Q ss_conf             87762568884028831030538986799817788832-689999999880-899850--1105699---9988431011
Q gi|254780662|r  855 LSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTAT-FSDTANILAQEA-KFWLDD--AFASGGS---MGYDHKKMGI  927 (1576)
Q Consensus       855 LditDN~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~-fsD~An~ia~~~-gfwlgd--AFaSGgs---~GydHK~mGI  927 (1576)
                      ---  ++.+..+               =+-+||=||.. -+.|.-...... |..--.  +..+|++   .|.|-..-. 
T Consensus       153 ~g~--~~~G~D~---------------dipapDm~t~~~em~wi~d~y~~~~g~~~~ta~gvvTGk~v~~GG~~~~~~~-  214 (234)
T 1hwx_A          153 AKK--GFIGPGV---------------DVPAPNMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGLDLRTAA-  214 (234)
T ss_dssp             HHT--TCCBTTT---------------EEEECBTTBCHHHHHHHHHHHHTTGGGGCTTGGGGCSSCCGGGTCTCHHHHH-
T ss_pred             HCC--CCCCCCC---------------CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCHHHHH-
T ss_conf             052--5678778---------------9882013546887758987556403877555554334785320899889999-


Q ss_pred             CHHHHHHHHHHHHHHCCCC
Q ss_conf             4678999999999980899
Q gi|254780662|r  928 TARGAWETVKRHFREMDID  946 (1576)
Q Consensus       928 TarGaw~~v~rhfrelg~D  946 (1576)
                       --.|.|-|-|.+.|-|+-
T Consensus       215 -~~~~~~~~~~~~~~~~~~  232 (234)
T 1hwx_A          215 -YVNAIEKVFRVYNEAGVT  232 (234)
T ss_dssp             -HHHHHHHHHHHHHHHTSC
T ss_pred             -HHHHHHHHHHHHHHCCCC
T ss_conf             -999999999999966875


No 16 
>>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} (A:87-192)
Probab=87.76  E-value=1.5  Score=21.41  Aligned_cols=80  Identities=13%  Similarity=0.026  Sum_probs=50.5

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCCCHHHHHH
Q ss_conf             88657999947877438999999999779912799846489998899737423677887663369999957999899999
Q gi|254780662|r   84 GISISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKITPEEAIE  163 (1576)
Q Consensus        84 ~s~~tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~~~e~~~~  163 (1576)
                      ....-+|.+.++|.|=||..|+..|.++|.+|-.+..-+.....+            ..+..--.|.++++-..+....+
T Consensus         4 ~~~~~~i~v~g~DrpGiva~it~~la~~~~nI~~l~~~~~~~~~~------------~~~~~~f~m~~~~~~p~~~~~~~   71 (106)
T 1u8s_A            4 HAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKL------------HSEQNQFHIAISARVDSGCNLMQ   71 (106)
T ss_dssp             CSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------------------CEEEEEEEEEECTTSCHHH
T ss_pred             CCEEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC------------CCCCCEEEEEEEEECCCCCCHHH
T ss_conf             751699999844706899999999997799666899995367766------------67785799999997599999999


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999999
Q gi|254780662|r  164 IKKQLIFIIEQL  175 (1576)
Q Consensus       164 L~~~L~~VL~dV  175 (1576)
                      |++++..+-.+.
T Consensus        72 l~~~l~~l~~~l   83 (106)
T 1u8s_A           72 LQEEFDALCTAL   83 (106)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999984


No 17 
>>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} (A:85-195)
Probab=86.78  E-value=1.7  Score=20.98  Aligned_cols=75  Identities=8%  Similarity=-0.039  Sum_probs=49.5

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCC-CHHHHHH
Q ss_conf             865799994787743899999999977991279984648999889973742367788766336999995799-9899999
Q gi|254780662|r   85 ISISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKI-TPEEAIE  163 (1576)
Q Consensus        85 s~~tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~-~~e~~~~  163 (1576)
                      ..+-+|+++..|.|=+|.-|+..|..+|.+|..+-+-++   .+.             ....-+|.++++-. .+...++
T Consensus         7 ~~~~~it~~g~DrpGiva~it~~la~~g~nI~~~~~~~~---~~~-------------~~g~~~~~~~~~~~~~~~~~~~   70 (111)
T 2nyi_A            7 TREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETL---PAP-------------FAGFTLFRXGSRVAFPFPLYQE   70 (111)
T ss_dssp             EEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE---ECS-------------STTCEEEEEEEEEEEEGGGHHH
T ss_pred             CEEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEE---CCC-------------CCCCCEEEEEEEEECCCCCHHH
T ss_conf             469999999429878999999999976957878777576---489-------------8886249999999679662799


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999999
Q gi|254780662|r  164 IKKQLIFIIEQL  175 (1576)
Q Consensus       164 L~~~L~~VL~dV  175 (1576)
                      |+++|..+-.+.
T Consensus        71 l~~~L~~l~~~l   82 (111)
T 2nyi_A           71 VVTALSRVEEEF   82 (111)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999985


No 18 
>>3lou_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia mallei} (A:1-93)
Probab=85.32  E-value=2  Score=20.42  Aligned_cols=76  Identities=7%  Similarity=-0.025  Sum_probs=49.6

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCCCH-HHHH
Q ss_conf             886579999478774389999999997799127998464899988997374236778876633699999579998-9999
Q gi|254780662|r   84 GISISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKITP-EEAI  162 (1576)
Q Consensus        84 ~s~~tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~~~-e~~~  162 (1576)
                      ..++-+|.++++|.|=+|..|+..|..+|.+|.-+-+-+.                ...+.-...+.++.+.... ...+
T Consensus         7 ~~~~~vitv~g~Dr~GiVa~vt~~la~~g~NI~~~~~~~~----------------~~~~~f~~~~~v~~~~~~~~~~~~   70 (93)
T 3lou_A            7 RPHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDD----------------DLSARFFVRCVFHATDDADALRVD   70 (93)
T ss_dssp             -CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEE----------------TTTTEEEEEEEEEECC----CCHH
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCC----------------CCCCEEEEEEEEECCCCCCCCCHH
T ss_conf             9972899998999886499999999978999858745348----------------888807898999715885533889


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999999999
Q gi|254780662|r  163 EIKKQLIFIIEQL  175 (1576)
Q Consensus       163 ~L~~~L~~VL~dV  175 (1576)
                      +|+++|..+-.+.
T Consensus        71 ~l~~~l~~~~~~~   83 (93)
T 3lou_A           71 ALRREFEPIAERF   83 (93)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHC
T ss_conf             9999888777651


No 19 
>>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} (A:1-86)
Probab=76.30  E-value=3.7  Score=18.03  Aligned_cols=69  Identities=14%  Similarity=0.196  Sum_probs=47.5

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCCCHHHHHHH
Q ss_conf             86579999478774389999999997799127998464899988997374236778876633699999579998999999
Q gi|254780662|r   85 ISISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKITPEEAIEI  164 (1576)
Q Consensus        85 s~~tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~~~e~~~~L  164 (1576)
                      +.+.++.++++|+|=||.+|...+..+|.+|...-+-+.                  ++.-...++++++   +...++|
T Consensus         4 ~~~~vitv~g~DrpGiva~is~~la~~g~nI~~~~~~~~------------------~~~f~~~~~~~~~---~~~~~~l   62 (86)
T 1u8s_A            4 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMF------------------GKEFTLLMLISGS---PSNITRV   62 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE------------------TTEEEEEEEEEEC---HHHHHHH
T ss_pred             CEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEE------------------CCCEEEEEEECCC---HHHHHHH
T ss_conf             418999999269885999999999987995998588998------------------7962999985058---4566789


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999999
Q gi|254780662|r  165 KKQLIFIIEQ  174 (1576)
Q Consensus       165 ~~~L~~VL~d  174 (1576)
                      +++|..+.++
T Consensus        63 ~~~l~~~a~~   72 (86)
T 1u8s_A           63 ETTLPLLGQQ   72 (86)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             9999998765


No 20 
>>1zpv_A ACT domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Streptococcus pneumoniae TIGR4} (A:)
Probab=75.94  E-value=3.8  Score=17.95  Aligned_cols=68  Identities=12%  Similarity=0.068  Sum_probs=49.3

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCC-CHHHHHH
Q ss_conf             865799994787743899999999977991279984648999889973742367788766336999995799-9899999
Q gi|254780662|r   85 ISISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKI-TPEEAIE  163 (1576)
Q Consensus        85 s~~tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~-~~e~~~~  163 (1576)
                      +.+-+|.++++|+|=+|-.|+..|.++|.+|.-+-.-+.                  ++....+|.++++.. +.++   
T Consensus         3 ~~~~vitv~g~DrpGiva~vt~~la~~g~NI~~~~~~~~------------------~~~~~~~~~i~~~~~~~~~~---   61 (91)
T 1zpv_A            3 AXKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVL------------------DEYFTXXAVVSSDEKQDFTY---   61 (91)
T ss_dssp             CEEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEE------------------TTEEEEEEEEEESSCCCHHH---
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEEE------------------CCCEEEEEEEECCCCCCHHH---
T ss_conf             735999999389887999999999987993998051893------------------79518999996699999999---


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999999
Q gi|254780662|r  164 IKKQLIFIIE  173 (1576)
Q Consensus       164 L~~~L~~VL~  173 (1576)
                      |+++|+.+.+
T Consensus        62 l~~~L~~~~~   71 (91)
T 1zpv_A           62 LRNEFEAFGQ   71 (91)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             9999999999


No 21 
>>1tlt_A Putative oxidoreductase (virulence factor MVIM homolog); structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} (A:1-126,A:262-319)
Probab=64.26  E-value=6.3  Score=16.00  Aligned_cols=89  Identities=15%  Similarity=0.178  Sum_probs=60.3

Q ss_pred             CEEEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEEEC
Q ss_conf             64599605886332443111276620899973943686777881379899999996689870038978717897089821
Q gi|254780662|r  951 PFTVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRKVLSKGGMIISRK 1030 (1576)
Q Consensus       951 ~fTvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~lprssw~dyd~~liS~gGgv~~r~ 1030 (1576)
                      .+-++|.|.++.-.+.+.+...+...++++|       |||++-+..+.+.-      +-.|.+.-..+++.--.||--+
T Consensus         7 RVgiIGlG~ia~~~~l~~L~~~~~~~ivgi~-------d~~~eka~~~~~~~------~i~~~~s~~~L~~~~DaV~I~t   73 (184)
T 1tlt_A            7 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAW-------SPTRAKALPICESW------RIPYADSLSSLAASCDAVFVHS   73 (184)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSEEEEEEE-------CSSCTTHHHHHHHH------TCCBCSSHHHHHTTCSEEEECS
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCCEEEEEE-------CCCHHHHHHHHHHH------CCCCCCHHHHHHCCCCCCCCCC
T ss_conf             8999959999999999999838996899998-------79999999999981------9983481999840443112343


Q ss_pred             CCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECC
Q ss_conf             4442179899987098855428889998630365304433
Q gi|254780662|r 1031 EKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWF 1070 (1576)
Q Consensus      1031 ~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~ 1070 (1576)
                                        ..-+-.+.+...|++.++.+.-
T Consensus        74 ------------------p~~~H~e~a~~aL~~GkhVlvE   95 (184)
T 1tlt_A           74 ------------------STASHFDVVSTLLNAGVHVCVD   95 (184)
T ss_dssp             ------------------CTTHHHHHHHHHHHTTCEEEEE
T ss_pred             ------------------CCCCCCCCCCCCCCCCHHHHHC
T ss_conf             ------------------2100012332233322233303


No 22 
>>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, structural genomics, protein structure initiative, PSI-2; 2.04A {Streptococcus agalactiae COH1} (A:)
Probab=59.15  E-value=7.1  Score=15.54  Aligned_cols=118  Identities=10%  Similarity=-0.033  Sum_probs=80.4

Q ss_pred             CCCEECCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHCCCCCC----C-------C-CCCCCCCCHH----HHH
Q ss_conf             3103053898679981778883268999999988089985011056999----9-------8-8431011467----899
Q gi|254780662|r  870 DNTVCLDGNDPYFVVAADKGTATFSDTANILAQEAKFWLDDAFASGGSM----G-------Y-DHKKMGITAR----GAW  933 (1576)
Q Consensus       870 ~~vv~~d~~d~ylvvaaDkgTa~fsD~An~ia~~~gfwlgdAFaSGgs~----G-------y-dHK~mGITar----Gaw  933 (1576)
                      +.+++....+|.+++|.--....+.+..-...++.|+-+-.-+.-||.+    |       + ++...+.+.+    -.-
T Consensus        46 ~~~l~~~~~~p~v~lG~~q~~~~~~~~~~~~~~~~gi~vvrR~tGGgaV~hd~G~l~~~~i~~~~~~~~~~~~~~~~~~~  125 (288)
T 2p0l_A           46 EIILHIWPXTKTVILGXLDRELPHLELAKKEIISRGYEPVVRNFGGLAVVADEGILNFSLVIPDVFERKLSISDGYLIXV  125 (288)
T ss_dssp             CEEEEECCBSSEEEECTTGGGCTTHHHHHHHHHTTTCEEEECTTCCSCEEESTTEEEEEEEEESCC---CCHHHHHHHHH
T ss_pred             CCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf             97899963899899898767681199999999986994899648986489779956999996266546789899999999


Q ss_pred             HHHHHHHHHCCCCCCCCC---EEEEEECCCC---CCCCCCHHHCCCCCEEEEEECCCEEEECCC
Q ss_conf             999999998089965486---4599605886---332443111276620899973943686777
Q gi|254780662|r  934 ETVKRHFREMDIDIQSTP---FTVAGVGDMS---GDVFGNGMLLSRKIQLVAAFDHSDIFIDPD  991 (1576)
Q Consensus       934 ~~v~rhfrelg~D~q~~~---fTvvgiGdms---GDVfGNgmLls~~i~lvaafdh~hif~DP~  991 (1576)
                      +.+..-++++|++....+   +-+.+-+|..   .-+.|||+..+++.-+.    |--|.+|+|
T Consensus       126 ~~i~~~L~~lGi~a~~~~~~~~~~~~~~di~~~g~KI~G~aq~~~~~~~l~----~gsl~~~~d  185 (288)
T 2p0l_A          126 DFIRSIFSDFYQPIEHFEVETSYCPGKFDLSINGKKFAGLAQRRIKNGIAV----SIYLSVCGD  185 (288)
T ss_dssp             HHHHHHTTTSCSCCEECCCTTSSSCCTTCEEETTEEEEEEEEEEETTEEEE----EEEEECSSC
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCCCCCEEECCEEEEEEEEEEECCEEEE----EEEEEEECC
T ss_conf             999999997197517732556657886657888887899899983893999----999999788


No 23 
>>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} (A:1-210)
Probab=59.06  E-value=2.7  Score=19.30  Aligned_cols=72  Identities=10%  Similarity=0.128  Sum_probs=42.5

Q ss_pred             CCCE--EEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCEE
Q ss_conf             4864--59960588633244311127662089997394368677788137989999999668987003897871789708
Q gi|254780662|r  949 STPF--TVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRKVLSKGGMI 1026 (1576)
Q Consensus       949 ~~~f--TvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~lprssw~dyd~~liS~gGgv 1026 (1576)
                      ..++  -++|.|.|.....-+.+...+...++|++       |++|+....+.++.......-..+.||+.-+-.++=-+
T Consensus        81 ~~~irvgiIG~G~~g~~~~~~~l~~~~~~~ivav~-------d~~~~~~~~~~~~~~~~~~~~~~~~d~~ell~~~~vD~  153 (210)
T 1h6d_A           81 DRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALV-------SGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDA  153 (210)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEE-------CSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCE
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEE-------CCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCE
T ss_conf             89717999948699999999999729898899998-------79999999999984899556755599999955999988


Q ss_pred             E
Q ss_conf             9
Q gi|254780662|r 1027 I 1027 (1576)
Q Consensus      1027 ~ 1027 (1576)
                      +
T Consensus       154 V  154 (210)
T 1h6d_A          154 V  154 (210)
T ss_dssp             E
T ss_pred             E
T ss_conf             9


No 24 
>>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} (A:)
Probab=57.16  E-value=8  Score=15.05  Aligned_cols=118  Identities=14%  Similarity=0.200  Sum_probs=77.3

Q ss_pred             CCCEECCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHCCCCCCC-----------CCCCCCCCC--HHHHHHHH
Q ss_conf             31030538986799817788832689999999880899850110569999-----------884310114--67899999
Q gi|254780662|r  870 DNTVCLDGNDPYFVVAADKGTATFSDTANILAQEAKFWLDDAFASGGSMG-----------YDHKKMGIT--ARGAWETV  936 (1576)
Q Consensus       870 ~~vv~~d~~d~ylvvaaDkgTa~fsD~An~ia~~~gfwlgdAFaSGgs~G-----------ydHK~mGIT--arGaw~~v  936 (1576)
                      +.+++....+|-+++|.--......+..  ...++|+-+-.-+.-||.+=           ++.+...+.  -+-.-+.+
T Consensus        33 ~~~l~~~~~~p~v~iG~~q~~~~ev~~~--~~~~~~i~vvrR~tGGg~v~hd~G~l~~s~i~~~~~~~~~~~y~~~~~~i  110 (262)
T 2c8m_A           33 KPILRFYRHDRSVIIGYFQVAEEEVDLD--YMKKNGIMLARRYTGGGAVYHDLGDLNFSVVRSSDDMDITSMFRTMNEAV  110 (262)
T ss_dssp             CCEEEEECCSSEEEECTTCCHHHHSCHH--HHHHTTCEEEECSSCSCCEEECTTEEEEEEEEECSSCCHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCEEEECCCCCHHHHHCHH--HHHHCCCCEEEEECCCCEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             9899998179979989789803554989--99867983899836996499889981899997058999999999999999


Q ss_pred             HHHHHHCCCCCCCCCEEE---EE-----ECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCC
Q ss_conf             999998089965486459---96-----0588633244311127662089997394368677788
Q gi|254780662|r  937 KRHFREMDIDIQSTPFTV---AG-----VGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPN  993 (1576)
Q Consensus       937 ~rhfrelg~D~q~~~fTv---vg-----iGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD  993 (1576)
                      ...|+++|++....+-..   ++     +-....-+.|+|+...++.-+.    |--+.+|+|++
T Consensus       111 ~~~l~~~Gi~~~~~~~~~~~~~~~~~~di~~~gkKi~G~a~~~~~~~~l~----~~tll~~~d~~  171 (262)
T 2c8m_A          111 VNSLRILGLDARPGELNDVSIPVNKKTDIMAGEKKIMGAAGAMRKGAKLW----HAAMLVHTDLD  171 (262)
T ss_dssp             HHHHHHTTCCCEECCBCCTTSSSSBTTSEEETTEEEEEEEEEEETTEEEE----EEEEESSCCHH
T ss_pred             HHHHHHCCCEEEECCCCCEEEECCCCCCCCCCCEEEEEEEEEEECCEEEE----EEEECCCCCHH
T ss_conf             99999739515885858807845677765568706875302543888999----86611479999


No 25 
>>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} (A:1-76)
Probab=55.20  E-value=3.4  Score=18.39  Aligned_cols=19  Identities=47%  Similarity=0.672  Sum_probs=14.3

Q ss_pred             EECCCCCCCHHHHHHHHHC
Q ss_conf             8555103076789999973
Q gi|254780662|r 1108 GEGANLGLTQQARVVYSLN 1126 (1576)
Q Consensus      1108 ~EG~NLg~Tq~~Rie~a~~ 1126 (1576)
                      ||||.|-+||.|||.-++.
T Consensus        46 geggeltltqlg~ia~~lg   64 (76)
T 2bnm_A           46 GEGGELTLTQLGRIAHVLG   64 (76)
T ss_dssp             TTCTTCBHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHC
T ss_conf             9866743778999999979


No 26 
>>1w91_A Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 2.2A {Geobacillus stearothermophilus} (A:199-326)
Probab=50.34  E-value=10  Score=14.22  Aligned_cols=82  Identities=18%  Similarity=0.113  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHCC--EEEEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECC--
Q ss_conf             999999997289--1881047998413777513632288741100385311254101897888761269818998448--
Q gi|254780662|r  209 ALTFLNWLNEDN--FQFMGMRYHPLVAGQKQVKLDHDMPTELGILRDSSIVVLGFDRVTPATRSFPEGNDFLIITKSN--  284 (1576)
Q Consensus       209 a~aFL~WL~ddh--FtFLGyReY~l~~~~~~~~L~~~~~sgLGILR~~~~~~~~~~~l~~~~r~~~~~~~~LivtKan--  284 (1576)
                      ..+||+.+...+  +=|+|+..|.-...     .....+...+.+..++.....+..+...+.+....+.|++||-=+  
T Consensus        10 ~~~fl~~~~~~~~p~DFig~n~Y~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~piyITEng~s   84 (128)
T 1w91_A           10 ITDFLHFCAERRVPVDFVSRHAYTSKAP-----HKKTFEYYYQELEPPEDMLEQFKTVRALIRQSPFPHLPLHITEYNTS   84 (128)
T ss_dssp             HHHHHHHHHHTTCCCCEEEEEEECBCSC-----SEECSSCEECCBCCHHHHHHHHHHHHHHHHTSSSTTCCEEEEEEESC
T ss_pred             HHHHHHHHHHCCCCCCEEEEEECCCCCC-----CCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCC
T ss_conf             4899999983599777799720577877-----76532100333047899999999999999974899997665135577


Q ss_pred             --CCCCCCCCCCC
Q ss_conf             --73310036776
Q gi|254780662|r  285 --VISVIYRRTYM  295 (1576)
Q Consensus       285 --~rS~VHR~ayl  295 (1576)
                        .+..+||..|+
T Consensus        85 ~~~~~~~~d~~y~   97 (128)
T 1w91_A           85 YSPINPVHDTALN   97 (128)
T ss_dssp             SCTTCGGGGSHHH
T ss_pred             CCCCCCCCCHHHH
T ss_conf             7766434404777


No 27 
>>1fiu_A Type II restriction enzyme ngomi; protein-DNA complex, double helix, restriction endonuclease, restriction-modifiction systems, hydrolase; HET: DNA; 1.60A {Neisseria gonorrhoeae} (A:)
Probab=49.41  E-value=9.7  Score=14.33  Aligned_cols=63  Identities=22%  Similarity=0.225  Sum_probs=27.4

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCHHHHH-----HHHHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf             778883268999999988089985011056999988431011467899-----999999998089965486459960588
Q gi|254780662|r  886 ADKGTATFSDTANILAQEAKFWLDDAFASGGSMGYDHKKMGITARGAW-----ETVKRHFREMDIDIQSTPFTVAGVGDM  960 (1576)
Q Consensus       886 aDkgTa~fsD~An~ia~~~gfwlgdAFaSGgs~GydHK~mGITarGaw-----~~v~rhfrelg~D~q~~~fTvvgiGdm  960 (1576)
                      ||+.--+=--||++|+..-|           +-+..-|.-|-|+-...     ++++.-|-++.+. ..-+..|..+|.-
T Consensus        33 AD~s~~~S~~iA~~ia~~L~-----------a~tv~~~~agQt~G~~FE~~~~~Fi~~tf~~l~Hl-Rpg~W~V~~~~~r  100 (286)
T 1fiu_A           33 ADGSNTRSFNIAKGIADLLH-----------SETVSERLPGQTSGNAFEAICSEFVQSAFEKLQHI-RPGDWNVKQVGSR  100 (286)
T ss_dssp             SCTTCHHHHHHHHHHHHHTT-----------CCCBCCCCCHHHHHHHHHHHHHHHHHHHHGGGTTT-SCSCEEEEECCTT
T ss_pred             CCCCCCHHHHHHHHHHHHHH-----------HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHCCH
T ss_conf             77777123789999999985-----------66898764787772089999999999999886437-9886505451452


No 28 
>>3ct8_A Protein BH2160, putative glyoxalase; NP_243026.1, glyoxalase/bleomycin resistance protein/dioxygenase superfamily, structural genomics; HET: UNL; 2.10A {Bacillus halodurans c-125} (A:1-79)
Probab=48.13  E-value=7.3  Score=15.43  Aligned_cols=24  Identities=21%  Similarity=0.440  Sum_probs=20.0

Q ss_pred             CCHHHHHHHHHHHHHCCEEEEEEEEEEE
Q ss_conf             1148899999999728918810479984
Q gi|254780662|r  204 EYAVEALTFLNWLNEDNFQFMGMRYHPL  231 (1576)
Q Consensus       204 ee~~Ea~aFL~WL~ddhFtFLGyReY~l  231 (1576)
                      .+++++++|..||    |..|||+.|.-
T Consensus        29 sDLe~s~~fwgwL----L~~LGy~~~q~   52 (79)
T 3ct8_A           29 DHLEESIAFWDWL----LGELGYEDYQS   52 (79)
T ss_dssp             SCHHHHHHHHHHH----HHHTTCEEEEE
T ss_pred             CCHHHHHHHHHHH----HCCEEEEEEEC
T ss_conf             9999999999997----48800586102


No 29 
>>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} (A:)
Probab=47.89  E-value=11  Score=13.92  Aligned_cols=47  Identities=19%  Similarity=0.154  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf             78999999985007899999999750065179999999999984898824
Q gi|254780662|r 1175 MTSEVVELVLRNNYLQSLAISLESRKGMAMMWNFAQLMKFLGKEGALDRE 1224 (1576)
Q Consensus      1175 mtdeV~~lVL~~n~~Q~~~ls~~~~~~~~~~~~~~rli~~Le~~g~Ldr~ 1224 (1576)
                      +-++|.++|...+..-   .|..+++=.--.+..+|+|+.||+.|.+...
T Consensus        11 l~~~a~~~V~~~~~~S---~S~lQR~lrIGynRAariid~LE~~GiVsp~   57 (73)
T 2ve8_A           11 LYDEAVRFVTESRRAS---ISAVQRKLKIGYNRAARMIEAMEMAGVVTPM   57 (73)
T ss_dssp             THHHHHHHHHHHCCCC---HHHHHHHHTCCHHHHHHHHHHHHHTTSBCCC
T ss_pred             HHHHHHHHHHHHCCCC---HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC
T ss_conf             9999999999818534---8999999701524999999999988767887


No 30 
>>3id5_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransferase, RNA-binding, rRNA processing, transferase; HET: SAM; 4.01A {Sulfolobus solfataricus} (A:1-133)
Probab=46.42  E-value=2.1  Score=20.28  Aligned_cols=27  Identities=22%  Similarity=0.165  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf             888999999999997698756435699
Q gi|254780662|r  604 VDRRDALVEAFKYIFHERVDNDSFNHL  630 (1576)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~e~D~~n~L  630 (1576)
                      ..+|+++++-....|-...+.|.++.|
T Consensus        91 ~~lR~n~~~~~~e~~f~~s~~ey~~~l  117 (133)
T 3id5_A           91 RIFRESLPKVAIDIKFASNEEDYYNFL  117 (133)
T ss_dssp             HHHHHTHHHHHHHTTSCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             999987999999836679989999999


No 31 
>>2v6z_M DNA polymerase epsilon subunit 2; DNA replication, DPOE2, transferase, AAA protein family; HET: DNA; NMR {Homo sapiens} (M:)
Probab=45.52  E-value=7.8  Score=15.16  Aligned_cols=50  Identities=16%  Similarity=0.100  Sum_probs=35.5

Q ss_pred             CHHHHCCCHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHH
Q ss_conf             04762688554620899999999974889888787999998722894886
Q gi|254780662|r  320 TRLVYSQRASKIPLLREKIVKVQNLLNFHPNSHSSRMLQNTLEFYPRDEL  369 (1576)
Q Consensus       320 TSsAY~~sv~~IPiLRrKV~~VL~~sGf~p~SHsgK~L~~ILEtyPRDEL  369 (1576)
                      +|+|....-.+..-||.+|-..++..||.-.+-.-|-|.++|+.++..|+
T Consensus        16 ~~~~~~~~~~~~~~LRk~IvsaFkL~Gl~Lr~EAs~YL~e~L~~~~~~Er   65 (99)
T 2v6z_M           16 SSSARLQVDMAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELEL   65 (99)
T ss_dssp             ---------CCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHTTTSCTTTH
T ss_pred             CHHHHHHHHHCHHHHHHHHHHHHHHHCEEECHHHHHHHHHHHCCCCHHHH
T ss_conf             32477762008899999999886120003538899999998078988899


No 32 
>>2rk0_A Glyoxalase/bleomycin resistance protein/dioxygenase domain; 11002Z, glyoxylase, PSI-II, newyork structural genomix research consortium (nysgrc); 2.04A {Frankia SP} (A:68-136)
Probab=45.35  E-value=12  Score=13.63  Aligned_cols=48  Identities=8%  Similarity=0.088  Sum_probs=34.8

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC----CCCEEEEEECCCCCC
Q ss_conf             999988431011467899999999998089965----486459960588633
Q gi|254780662|r  916 GSMGYDHKKMGITARGAWETVKRHFREMDIDIQ----STPFTVAGVGDMSGD  963 (1576)
Q Consensus       916 gs~GydHK~mGITarGaw~~v~rhfrelg~D~q----~~~fTvvgiGdmsGD  963 (1576)
                      |..|++|=+..+.++.....+..++++.|+.+.    ...+..+-.=||+|-
T Consensus         2 g~~gl~H~Af~v~s~~~l~~~~~~L~~~gv~~~~~~~~g~~~siyf~DPdG~   53 (69)
T 2rk0_A            2 TRPGLDHLSFSVESXTDLDVLEERLAKAGAAFTPTQELPFGWILAFRDADNI   53 (69)
T ss_dssp             TSSEEEEEEEEESSHHHHHHHHHHHHHHTCCBCCCEEETTEEEEEEECTTCC
T ss_pred             CCCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCEEEEEEECCCCC
T ss_conf             6877315887502078999999999978986478661798499999999999


No 33 
>>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A (A:1-125)
Probab=45.32  E-value=7.7  Score=15.22  Aligned_cols=66  Identities=11%  Similarity=0.062  Sum_probs=41.6

Q ss_pred             CEEEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCEEE
Q ss_conf             64599605886332443111276620899973943686777881379899999996689870038978717897089
Q gi|254780662|r  951 PFTVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRKVLSKGGMII 1027 (1576)
Q Consensus       951 ~fTvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~lprssw~dyd~~liS~gGgv~ 1027 (1576)
                      .+-++|.|.|+.....+.+...+...++|++       |++|+....+.+   -|..+ ...+||+.-+-+++=.++
T Consensus         4 ri~iiG~G~~g~~~~~~~~~~~~~~~lvai~-------d~~~~~~~~~~~---~~~~~-~~~~~~~~l~~~~~~d~v   69 (125)
T 3i23_A            4 KXGFIGFGKSANRYHLPYVXIRETLEVKTIF-------DLHVNEKAAAPF---KEKGV-NFTADLNELLTDPEIELI   69 (125)
T ss_dssp             EEEEECCSHHHHHTTHHHHTTCTTEEEEEEE-------CTTCCHHHHHHH---HTTTC-EEESCTHHHHSCTTCCEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCCEEEEEE-------ECCHHHHHHHHH---HCCCC-CEECCHHHHHCCCCCCEE
T ss_conf             5999989399999999999619897899999-------099999999985---54899-356999999659998889


No 34 
>>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} (A:1-83)
Probab=44.79  E-value=12  Score=13.56  Aligned_cols=68  Identities=16%  Similarity=0.063  Sum_probs=47.5

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCCCHHHHHHHHH
Q ss_conf             57999947877438999999999779912799846489998899737423677887663369999957999899999999
Q gi|254780662|r   87 ISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKITPEEAIEIKK  166 (1576)
Q Consensus        87 ~tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~~~e~~~~L~~  166 (1576)
                      ..-+++...|.|-++-.|+..+.++|..|..+-|-..     .          .......+.+.+++.-.+-+++..+.+
T Consensus         4 ~v~l~v~~~Dr~G~L~~I~~iia~~~~nI~~i~~~~~-----~----------~~~~~~~~~~~~~v~v~~~~~l~~ii~   68 (83)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLI-----K----------HGEHEGKALIYFEIEGGDFEKILERVK   68 (83)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEEC-----C----------SSTTTTEEEEEEEECSSCHHHHHHHHH
T ss_pred             CEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEE-----C----------CCCCCCCEEEEEEECCCCHHHHHHHHH
T ss_conf             3358999758765599988899863897599987730-----3----------667788268999982899899999986


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780662|r  167 QLI  169 (1576)
Q Consensus       167 ~L~  169 (1576)
                      .|.
T Consensus        69 ~L~   71 (83)
T 1y7p_A           69 TFD   71 (83)
T ss_dssp             TCT
T ss_pred             CCC
T ss_conf             699


No 35 
>>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} (A:)
Probab=43.36  E-value=12  Score=13.39  Aligned_cols=127  Identities=11%  Similarity=0.007  Sum_probs=80.7

Q ss_pred             CCCEECCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHCCCCCC--CC--------CCCCCCCCHHHHH----HH
Q ss_conf             3103053898679981778883268999999988089985011056999--98--------8431011467899----99
Q gi|254780662|r  870 DNTVCLDGNDPYFVVAADKGTATFSDTANILAQEAKFWLDDAFASGGSM--GY--------DHKKMGITARGAW----ET  935 (1576)
Q Consensus       870 ~~vv~~d~~d~ylvvaaDkgTa~fsD~An~ia~~~gfwlgdAFaSGgs~--Gy--------dHK~mGITarGaw----~~  935 (1576)
                      +.+++.+..+|.+++|---......+.+-+..++.|+-+-.-+.-||.+  |-        -.+.-+.+.+..-    +.
T Consensus        49 ~~~l~~~~~~p~v~iG~~q~~~~~~~~~~~~~~~~gi~vvrR~tGGg~V~hd~g~l~~s~i~~~~~~~~~~~~y~~~~~~  128 (288)
T 2p5i_A           49 PPTLRAWVHHNTVVLGIQDSRLPQIKAGIEALKGFQHDVIVRNSGGLAVVLDSGILNLSLVLKEEKGFSIDDGYELXYEL  128 (288)
T ss_dssp             CCEEEEECCSSEEEEEHHHHTSTTHHHHHHHHHHTTCEEEEESSCCCCEEECTTEEEEEEEEECCTTCCHHHHHHHHHHH
T ss_pred             CCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             98899995399899898777675478999999974991899638996488669963899997367667889999999999


Q ss_pred             HHHHHHHCCCCCCCCC---EEEEEECC---CCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHH
Q ss_conf             9999998089965486---45996058---86332443111276620899973943686777881379899999996
Q gi|254780662|r  936 VKRHFREMDIDIQSTP---FTVAGVGD---MSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFD 1006 (1576)
Q Consensus       936 v~rhfrelg~D~q~~~---fTvvgiGd---msGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~ 1006 (1576)
                      +.+.|+++|++....+   .-|.+-.|   ...-+.|||+..+++.-+.    |--|.+|+|      ..+..+.|.
T Consensus       129 i~~~L~~lGi~~~~~~~~~~~~~~~~di~~~gkKi~G~aq~~~~~~~l~----h~sllv~~d------~~~~~~~~~  195 (288)
T 2p5i_A          129 ICSXFQDHREQIEAREIVGSYCPGSYDLSIDGKKFAGISQRRIRGGVAV----QIYLCVSGS------GAERAKXIR  195 (288)
T ss_dssp             HHHHTC---CCCEECCCTTSSSCCTTCEEETTEEEEEEEEEEETTEEEE----EEEEECSSC------HHHHHHHHH
T ss_pred             HHHHHHHCCCCEEECCCCCCCCCCCCEEEECCEEEEEEEEEEECCEEEE----EEEEEEECC------HHHHHHHHH
T ss_conf             9999997499607635556657775506778866999767898887999----999998579------999999972


No 36 
>>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling, bifunctional enzyme; HET: NAD; 1.70A {Pseudomonas SP} (B:1-130,B:285-312)
Probab=43.13  E-value=4  Score=17.74  Aligned_cols=36  Identities=14%  Similarity=0.252  Sum_probs=29.1

Q ss_pred             CEEEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCC
Q ss_conf             6459960588633244311127662089997394368677788
Q gi|254780662|r  951 PFTVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPN  993 (1576)
Q Consensus       951 ~fTvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD  993 (1576)
                      .+-++|.|++.|.-+-+.+...++..++|.+       ||+|+
T Consensus         6 kVgIIG~G~~g~~~~~~~l~~~~~~eivai~-------d~~~~   41 (158)
T 1nvm_B            6 KVAIIGSGNIGTDLMIKVLRNAKYLEMGAMV-------GIDAA   41 (158)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEEE-------CSCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCCEEEEEE-------ECCCC
T ss_conf             3999868799999999998459996899998-------16825


No 37 
>>1jqo_A Phosphoenolpyruvate carboxylase; beta barrel, carbon dioxide fixation, lyase; 3.00A {Zea mays} (A:133-297,A:449-707)
Probab=43.04  E-value=12  Score=13.64  Aligned_cols=18  Identities=33%  Similarity=0.479  Sum_probs=14.0

Q ss_pred             CEEEEEEECCCCCCCEEE
Q ss_conf             657998405423304042
Q gi|254780662|r  773 EVEGVHLRCGKIARGGLR  790 (1576)
Q Consensus       773 ~~eGvHlR~g~vARGGlR  790 (1576)
                      .+.=||=|||.|.|||.-
T Consensus       351 ~l~~FhGrGGsvgRGGgp  368 (424)
T 1jqo_A          351 KLTLFHGRGGTVGRGGGP  368 (424)
T ss_dssp             EEEEEEECCSSGGGTCCC
T ss_pred             EEEEECCCCCCCCCCCCC
T ss_conf             499970788888899994


No 38 
>>2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein structure initiative; 2.60A {Escherichia coli O6} (X:118-207)
Probab=42.97  E-value=12  Score=13.34  Aligned_cols=55  Identities=15%  Similarity=0.125  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHCCCC
Q ss_conf             2689999999880899850110569999884310114-678999999999980899
Q gi|254780662|r  892 TFSDTANILAQEAKFWLDDAFASGGSMGYDHKKMGIT-ARGAWETVKRHFREMDID  946 (1576)
Q Consensus       892 ~fsD~An~ia~~~gfwlgdAFaSGgs~GydHK~mGIT-arGaw~~v~rhfrelg~D  946 (1576)
                      |-.||...+=++||++.+-.|...-+..|+-..|=+- --.-|.++.|.+.|-||-
T Consensus        13 tv~eIi~~vl~~~~~~~~~~~~~~l~~~~~~r~y~~Qy~ESD~~Fi~Rll~e~Gi~   68 (90)
T 2p5z_X           13 TVPQIVEKILRERHQMRGQDFVFNLKSEYPAREQVMQYGEDDLTFVSRLLSEVGIW   68 (90)
T ss_dssp             CHHHHHHHHHHTTTCCCSSSEEEECSSCCCCEEEEEECSCCHHHHHHHHHHHHTCE
T ss_pred             CHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCE
T ss_conf             98999999998717544553356326778743013001465799999999976987


No 39 
>>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* (A:183-372)
Probab=41.59  E-value=13  Score=13.18  Aligned_cols=96  Identities=15%  Similarity=0.131  Sum_probs=75.7

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf             898679981778883268999999988089985011056999988431-0114678999999999980899654864599
Q gi|254780662|r  877 GNDPYFVVAADKGTATFSDTANILAQEAKFWLDDAFASGGSMGYDHKK-MGITARGAWETVKRHFREMDIDIQSTPFTVA  955 (1576)
Q Consensus       877 ~~d~ylvvaaDkgTa~fsD~An~ia~~~gfwlgdAFaSGgs~GydHK~-mGITarGaw~~v~rhfrelg~D~q~~~fTvv  955 (1576)
                      ..-|.++++..=.++.-.+-.+..+...|.+....+++-|....+|.- +|....+...++++.+++-.        .++
T Consensus        23 A~rPvii~G~~~~~~~a~~~l~~lae~~~iPv~~t~~~kg~~~~~hp~~~G~~g~~~~~~~~~~l~~aD--------lil   94 (190)
T 2pgn_A           23 AKNPVILAGGGVARSGGSEALLKLAEMVGVPVVTTSTGAGVFPETHALAMGSAGFCGWKSANDMMAAAD--------FVL   94 (190)
T ss_dssp             CSSEEEEECHHHHHHTCHHHHHHHHHHHTCCEEECTTTTTSSCTTSTTEEEECSTTSCHHHHHHHHHCS--------EEE
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHCC--------CCC
T ss_conf             343333456531234438999999998297476235578655413330224567655145666654022--------200


Q ss_pred             EECCCCCCCCCCHHHCCCCCEEEEE
Q ss_conf             6058863324431112766208999
Q gi|254780662|r  956 GVGDMSGDVFGNGMLLSRKIQLVAA  980 (1576)
Q Consensus       956 giGdmsGDVfGNgmLls~~i~lvaa  980 (1576)
                      .+|-.-.+.-..+...+.+.+++..
T Consensus        95 ~iG~~~~~~~~~~~~~~~~~~~i~i  119 (190)
T 2pgn_A           95 VLGSRLSDWGIAQGYITKMPKFVHV  119 (190)
T ss_dssp             EESCCCCTTTTTTTTTCCCCSEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEC
T ss_conf             1344334455300112356421210


No 40 
>>2v8f_A Profilin-2, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus} PDB: 2v8c_A 2vk3_A* 1d1j_A* (A:)
Probab=41.25  E-value=12  Score=13.57  Aligned_cols=58  Identities=28%  Similarity=0.331  Sum_probs=33.0

Q ss_pred             CCCCCCCHHHCCCC----CEEEEECC-CCCC-CCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEE-----ECCCCCC
Q ss_conf             87003897871789----70898214-4421-79899987098855428889998630365304-----4338742
Q gi|254780662|r 1010 SSWQDFDRKVLSKG----GMIISRKE-KAVQ-LTPEAVAVIGISKQIATPSEIISAILMASVDL-----LWFGGIG 1074 (1576)
Q Consensus      1010 ssw~dyd~~liS~g----Ggv~~r~~-k~i~-ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDL-----lw~gGiG 1074 (1576)
                      |||++|=..|+..|    +.|+..+. ++|= -|+      |..-...+|+|+. .++...-+-     +|.||.-
T Consensus         2 ssWq~yvd~L~~tg~v~~aAIig~dg~~~vWA~s~------g~~~~~~~~~e~~-~~~~~~~~~~~~~Gi~igG~K   70 (140)
T 2v8f_A            2 AGWQSYVDNLMCDGCXQEAAIVGYCDAKYVWAATA------GGVFQSITPVEID-MIVGKDREGFFTNGLTLGAKK   70 (140)
T ss_dssp             CTTHHHHHHHHTTSCEEEEEEEECSSSCSEEEECT------TSSGGGCCHHHHH-HHHSSCSSHHHHHCEEETTEE
T ss_pred             CCHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECC------CCCCCCCCHHHHH-HHHHCCHHHHEECCEEECCEE
T ss_conf             83789999761547646689996689944788779------9875765999999-987348044300577977808


No 41 
>>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str} (A:)
Probab=40.87  E-value=6.9  Score=15.64  Aligned_cols=33  Identities=33%  Similarity=0.569  Sum_probs=19.8

Q ss_pred             EECCCEEEECCCCCCCCCHHHHHHHHHCC-CCCCCCCCHHHCC
Q ss_conf             97394368677788137989999999668-9870038978717
Q gi|254780662|r  980 AFDHSDIFIDPDPNSETTFDERKRLFDSP-SSSWQDFDRKVLS 1021 (1576)
Q Consensus       980 afdh~hif~DP~PD~~~s~~Er~RLf~lp-rssw~dyd~~liS 1021 (1576)
                      -|||-|||||=--|-+.-         -| -|+.--||++|-+
T Consensus        33 PfDHPHvFlDMG~d~E~i---------CpYCSTLYry~~~L~~   66 (87)
T 2jz8_A           33 PFDHPHIFIDMGSTDEKI---------CPYCSTLYRYDPSLSY   66 (87)
T ss_dssp             SSSSSSCEEECTTCCEEC---------CTTTCCEEECCTTSCT
T ss_pred             CCCCCEEEEECCCCCEEE---------CCCCCCEEEECCCCCC
T ss_conf             899988989759999798---------8899988784777776


No 42 
>>3iol_B Glucagon; receptor-ligand complex, cell membrane, disulfide bond, G- protein coupled receptor, glycoprotein, membrane, polymorphism, receptor; HET: 10M; 2.10A {Homo sapiens} PDB: 1d0r_A (B:)
Probab=40.37  E-value=14  Score=13.04  Aligned_cols=13  Identities=31%  Similarity=0.654  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHC
Q ss_conf             8899999999728
Q gi|254780662|r  207 VEALTFLNWLNED  219 (1576)
Q Consensus       207 ~Ea~aFL~WL~dd  219 (1576)
                      .-+.+|++||.++
T Consensus        17 ~aakdFv~WL~n~   29 (31)
T 3iol_B           17 QAAKEFIAWLVKG   29 (31)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHCC
T ss_conf             9999999999806


No 43 
>>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} (A:1-125)
Probab=39.53  E-value=7.1  Score=15.52  Aligned_cols=94  Identities=12%  Similarity=0.012  Sum_probs=56.2

Q ss_pred             EEEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCE-EEEEC
Q ss_conf             45996058863324431112766208999739436867778813798999999966898700389787178970-89821
Q gi|254780662|r  952 FTVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRKVLSKGGM-IISRK 1030 (1576)
Q Consensus       952 fTvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~lprssw~dyd~~liS~gGg-v~~r~ 1030 (1576)
                      +-++|.|.|.....-..+...+...++|.+       |++|+.+.++++.-     +-..+-+-..++++...- ++.  
T Consensus         5 vgiiG~G~~~~~~~~~~~~~~~~~~i~av~-------d~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~id~v~--   70 (125)
T 3f4l_A            5 CAFIGFGKSTTRYHLPYVLNRKDSWHVAHI-------FRRHAKPEEQAPIY-----SHIHFTSDLDEVLNDPDVKLVV--   70 (125)
T ss_dssp             EEEECCSHHHHHHTHHHHTTCTTTEEEEEE-------ECSSCCGGGGSGGG-----TTCEEESCTHHHHTCTTEEEEE--
T ss_pred             EEEEECCHHHHHHHHHHHHCCCCCEEEEEE-------ECCHHHHHHHHHHC-----CCCCEECCHHHHHCCCCCCEEE--
T ss_conf             999937799999999999738997599999-------89879999999875-----9983568999995699988998--


Q ss_pred             CCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCC
Q ss_conf             44421798999870988554288899986303653044338742
Q gi|254780662|r 1031 EKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIG 1074 (1576)
Q Consensus      1031 ~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiG 1074 (1576)
                                     +....-.-.+++...+++-.+++.--.++
T Consensus        71 ---------------i~~~~~~h~~~~~~al~~G~~v~~EKP~~   99 (125)
T 3f4l_A           71 ---------------VCTHADSHFEYAKRALEAGKNVLVEKPFT   99 (125)
T ss_dssp             ---------------ECSCGGGHHHHHHHHHHTTCEEEECSSSC
T ss_pred             ---------------ECCCCHHCCCHHHHHHCCCHHHHCCCCCC
T ss_conf             ---------------50431000005677632102322143321


No 44 
>>1r8s_E ARNO; protein transport/exchange factor; HET: GDP; 1.46A {Homo sapiens} (E:88-203)
Probab=38.26  E-value=14  Score=12.79  Aligned_cols=61  Identities=15%  Similarity=0.234  Sum_probs=48.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH--------CCHHHHHHHHHHHHCCCCH
Q ss_conf             899982899999999999999998457999847899998883--------9989998889997708317
Q gi|254780662|r 1241 EVSLSRPEIAILLAYAKLKLSEQLLDSTLIDDPFFFSILLSY--------FPRQLSELYSEDIMNHQLR 1301 (1576)
Q Consensus      1241 g~gltrpelavLlay~K~~l~~~l~~s~l~dd~~~~~~l~~y--------fP~~l~~~f~~~i~~H~Lr 1301 (1576)
                      ......++.+-.|||+.+.|-.++-.+..-.---...+....        ||...-+..-+.|..+|++
T Consensus        40 p~~~~~~d~~~~L~~siimLnTdlHn~~~k~kmt~~~Fi~n~~~~~~~~~~~~~~L~~iY~~I~~~~~~  108 (116)
T 1r8s_E           40 PGVFQSTDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEPFK  108 (116)
T ss_dssp             TTSSSCHHHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHTTTTBTTBCCCHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             875788999999999999998762174236776999999987377777889999999999999818871


No 45 
>>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} (A:1-84)
Probab=37.95  E-value=15  Score=12.75  Aligned_cols=57  Identities=4%  Similarity=-0.047  Sum_probs=43.1

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCCCHHH
Q ss_conf             657999947877438999999999779912799846489998899737423677887663369999957999899
Q gi|254780662|r   86 SISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKITPEE  160 (1576)
Q Consensus        86 ~~tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~~~e~  160 (1576)
                      .+-||.+.++|.|=+|..|+..|.++|.+|.-.-.-+.                  ++..--+|.++++..+.++
T Consensus         4 ~~~vltv~g~DrpGiva~vt~~la~~g~NI~~~~~~~~------------------~~~~~~~~~v~~~~~~~~~   60 (84)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRXACL------------------GGDFAXIVLVSLNAKDGKL   60 (84)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE------------------TTEEEEEEEEEESSSSSHH
T ss_pred             EEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEE------------------ECCEEEEEEEECCCHHHHH
T ss_conf             49999999269888999999999987998997561897------------------0756888763024304667


No 46 
>>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} (A:1-72)
Probab=37.42  E-value=15  Score=12.69  Aligned_cols=50  Identities=14%  Similarity=0.171  Sum_probs=40.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHH
Q ss_conf             9989999999999999988188889899999997-1479999999999875
Q gi|254780662|r  635 DLRVYEISVLRSYARYLRQASVTWSQNFIARVLS-KNPTISQLLFSLFRYR  684 (1576)
Q Consensus       635 ~l~~r~v~~lra~~~yl~Q~~~~~s~~~i~~~l~-~~p~~~~~l~~~F~~r  684 (1576)
                      .|+-||-.+|.+..+|..+.|+|-|..-|.+.+. +-|..++..+...+.+
T Consensus         3 ~LT~rq~~iL~~I~~~~~~~g~pps~rei~~~~g~~S~stV~~~l~~Le~~   53 (72)
T 1jhf_A            3 ALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARK   53 (72)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf             439999999999999999829897699999982999737899987513422


No 47 
>>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} (A:1-127)
Probab=35.99  E-value=15  Score=12.51  Aligned_cols=80  Identities=10%  Similarity=0.022  Sum_probs=55.2

Q ss_pred             CEEEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEEEC
Q ss_conf             64599605886332443111276620899973943686777881379899999996689870038978717897089821
Q gi|254780662|r  951 PFTVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRKVLSKGGMIISRK 1030 (1576)
Q Consensus       951 ~fTvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~lprssw~dyd~~liS~gGgv~~r~ 1030 (1576)
                      .+-++|.|.|.....-+.|..+++..++|.+       |++       .++.+-|...-..+.|++.-+.++.--++...
T Consensus         9 kvgiiG~G~~~~~~~~~~l~~~~~~~iv~v~-------d~~-------~~~~~~~~~~~~~~~~~~~~l~~~~vd~V~i~   74 (127)
T 3e82_A            9 NIALIGYGFVGKTFHAPLIRSVPGLNLAFVA-------SRD-------EEKVKRDLPDVTVIASPEAAVQHPDVDLVVIA   74 (127)
T ss_dssp             EEEEECCSHHHHHTHHHHHHTSTTEEEEEEE-------CSC-------HHHHHHHCTTSEEESCHHHHHTCTTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHCCCCEEEEEE-------CCC-------HHHHHHHCCCCCEECCHHHHHCCCCCCEEEEE
T ss_conf             4999978199999999999719896899998-------799-------99999647789647999999559999889993


Q ss_pred             CCCCCCCHHHHHHC
Q ss_conf             44421798999870
Q gi|254780662|r 1031 EKAVQLTPEAVAVI 1044 (1576)
Q Consensus      1031 ~k~i~ls~~~~~~l 1044 (1576)
                      .-.-.-.+.+..++
T Consensus        75 t~~~~h~~~~~~~~   88 (127)
T 3e82_A           75 SPNATHAPLARLAL   88 (127)
T ss_dssp             SCGGGHHHHHHHHH
T ss_pred             CCHHHHCCCCCCCC
T ss_conf             31332001221123


No 48 
>>3dnp_A Stress response protein YHAX; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.85A {Bacillus subtilis} (A:1-85,A:201-290)
Probab=33.37  E-value=17  Score=12.19  Aligned_cols=71  Identities=14%  Similarity=0.067  Sum_probs=39.1

Q ss_pred             CCHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCC
Q ss_conf             832689999999880899850110569999884310114678999999999980899654864599605886332
Q gi|254780662|r  890 TATFSDTANILAQEAKFWLDDAFASGGSMGYDHKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDV  964 (1576)
Q Consensus       890 Ta~fsD~An~ia~~~gfwlgdAFaSGgs~GydHK~mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDV  964 (1576)
                      |......+-.+....|..-.-....|+....+.+..-.-.-+--..++...+++|+++.+    |+.+||-..|+
T Consensus        46 Tgr~~~~~~~~l~~lgl~~~~i~~nGa~i~~~~~~~~~~~~~K~~~i~~l~~~~~~~~~~----~~~vGD~~nD~  116 (175)
T 3dnp_A           46 TNRHFRSAQKIAKSLKLDAKLITHSGAYIAEKIDAPFFEKVSKEAGLALVASELGLSXDD----VVAIGHQYDDL  116 (175)
T ss_dssp             CSSCHHHHHHHHHHTTCCSCEEEGGGTEEESSTTSCSEECCCHHHHHHHHHHHTTCCGGG----EEEEECSGGGH
T ss_pred             CCCCHHHHHHHHHHHCCCCCEECCCCEEEEECCCCEEEECCHHHHHHHHHHHHHCCCCCE----EEEEECCCCHH
T ss_conf             999889999999980997745616864999457504310140768999999974646240----89993882429


No 49 
>>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} (A:)
Probab=32.76  E-value=17  Score=12.11  Aligned_cols=13  Identities=23%  Similarity=0.652  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHC
Q ss_conf             8899999999728
Q gi|254780662|r  207 VEALTFLNWLNED  219 (1576)
Q Consensus       207 ~Ea~aFL~WL~dd  219 (1576)
                      .-|.+|+.||.++
T Consensus        17 ~aakdFv~WL~~~   29 (39)
T 1jrj_A           17 EAVRLFIEWLKNG   29 (39)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCC
T ss_conf             9999999999828


No 50 
>>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens} (A:)
Probab=32.70  E-value=17  Score=12.17  Aligned_cols=16  Identities=25%  Similarity=0.341  Sum_probs=9.4

Q ss_pred             HHHHHHHHHCCCCCCC
Q ss_conf             9999999980899654
Q gi|254780662|r  934 ETVKRHFREMDIDIQS  949 (1576)
Q Consensus       934 ~~v~rhfrelg~D~q~  949 (1576)
                      -+|++..+|+|||+..
T Consensus        20 PaaRklA~e~gidl~~   35 (70)
T 2coo_A           20 PAVRRLAMENNIKLSE   35 (70)
T ss_dssp             HHHHHHHHHHTCCGGG
T ss_pred             HHHHHHHHHCCCCHHH
T ss_conf             9999999992998300


No 51 
>>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A (C:)
Probab=32.63  E-value=17  Score=12.10  Aligned_cols=14  Identities=29%  Similarity=0.570  Sum_probs=10.0

Q ss_pred             CHHHHHHHHHHHHH
Q ss_conf             14889999999972
Q gi|254780662|r  205 YAVEALTFLNWLNE  218 (1576)
Q Consensus       205 e~~Ea~aFL~WL~d  218 (1576)
                      +...|.+|.+||.+
T Consensus        15 d~r~AqdFvqwLmn   28 (29)
T 2g49_C           15 DSRRAQDFVQWLMN   28 (29)
T ss_pred             HHHHHHHHHHHHHC
T ss_conf             99898999999862


No 52 
>>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A (A:)
Probab=31.80  E-value=18  Score=11.99  Aligned_cols=64  Identities=13%  Similarity=0.084  Sum_probs=37.3

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCCCHHHHHHHHH
Q ss_conf             57999947877438999999999779912799846489998899737423677887663369999957999899999999
Q gi|254780662|r   87 ISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKITPEEAIEIKK  166 (1576)
Q Consensus        87 ~tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~~~e~~~~L~~  166 (1576)
                      ..-+.|.+.|.|-++-.|+..|.+.++.|..+.     +.++.               ..+.+.+.++-.+.+.+..|.+
T Consensus         5 ~~~l~v~~~DrpGlL~~It~~la~~~inI~~i~-----~~~~~---------------~~~~~~~~v~v~d~~~l~~ii~   64 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIV-----LNAKD---------------GIFTCNLMIFVKNTDKLTTLMD   64 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEE-----EEECS---------------SEEEEEEEEEESSHHHHHHHHH
T ss_pred             EEEEEEEEECCCCHHHHHHHHHHHCCCEEEEEE-----EEECC---------------CEEEEEEEEEECCHHHHHHHHH
T ss_conf             999999996687889999999998798299999-----98269---------------9899999999999999999999


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254780662|r  167 QLIF  170 (1576)
Q Consensus       167 ~L~~  170 (1576)
                      .|++
T Consensus        65 ~l~~   68 (88)
T 2ko1_A           65 KLRK   68 (88)
T ss_dssp             HHTT
T ss_pred             HHHC
T ss_conf             9977


No 53 
>>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+ and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia coli} (A:97-257,A:389-647)
Probab=31.27  E-value=17  Score=12.10  Aligned_cols=17  Identities=41%  Similarity=0.563  Sum_probs=13.3

Q ss_pred             EEEEEEECCCCCCCEEE
Q ss_conf             57998405423304042
Q gi|254780662|r  774 VEGVHLRCGKIARGGLR  790 (1576)
Q Consensus       774 ~eGvHlR~g~vARGGlR  790 (1576)
                      +.=||=|||.|.|||..
T Consensus       348 i~~FhGrGgsvgRGGgp  364 (420)
T 1jqn_A          348 LTLFHGRGGSIGRGGAP  364 (420)
T ss_dssp             EEEEECSSTGGGSCHHH
T ss_pred             EEEEECCCCCCCCCCCC
T ss_conf             79961788877889983


No 54 
>>2olp_A Hemoglobin II; oxygen transport, hemoprotein, globins, oxygen storage/transport complex; HET: HEM; 1.93A {Lucina pectinata} (A:)
Probab=30.62  E-value=18  Score=11.84  Aligned_cols=42  Identities=19%  Similarity=0.197  Sum_probs=27.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             399899999999999999881888898999999971479999
Q gi|254780662|r  634 TDLRVYEISVLRSYARYLRQASVTWSQNFIARVLSKNPTISQ  675 (1576)
Q Consensus       634 ~~l~~r~v~~lra~~~yl~Q~~~~~s~~~i~~~l~~~p~~~~  675 (1576)
                      .+|+.+|+.++|.-..-+.+-+..+......+-+..||++-.
T Consensus         2 t~Ls~~q~~~i~~sW~~i~~~~~~~g~~~f~~lF~~~P~~~~   43 (152)
T 2olp_A            2 TTLTNPQKAAIRSSWSKFMDNGVSNGQGFYMDLFKAHPETLT   43 (152)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHCGGGGG
T ss_pred             CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHH
T ss_conf             999999999999999998705888999999999998978888


No 55 
>>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* (A:96-211,A:452-503)
Probab=30.29  E-value=15  Score=12.61  Aligned_cols=10  Identities=40%  Similarity=0.574  Sum_probs=5.1

Q ss_pred             EEEEEECCCE
Q ss_conf             0899973943
Q gi|254780662|r  976 QLVAAFDHSD  985 (1576)
Q Consensus       976 ~lvaafdh~h  985 (1576)
                      .|-.|.||+|
T Consensus       156 ~~~~~~~~~~  165 (168)
T 1zr6_A          156 DLNSAVDHHH  165 (168)
T ss_dssp             ----------
T ss_pred             HHHCCCCCCC
T ss_conf             5423566344


No 56 
>>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP dipeptidase 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A* (A:1-203,A:447-479)
Probab=30.21  E-value=19  Score=11.79  Aligned_cols=149  Identities=13%  Similarity=0.107  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHC----CCCCEEEEEECCCEEE-ECCCCCCCCCHHHHHH
Q ss_conf             6789999999999808996548645996058863324431112----7662089997394368-6777881379899999
Q gi|254780662|r  929 ARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGMLL----SRKIQLVAAFDHSDIF-IDPDPNSETTFDERKR 1003 (1576)
Q Consensus       929 arGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgmLl----s~~i~lvaafdh~hif-~DP~PD~~~s~~Er~R 1003 (1576)
                      -.-+-++++..|+++|.++....+.....=+++++..++.+.-    ...-+.|...-|.++- .++             
T Consensus        45 e~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~I~l~~H~DtVp~~~-------------  111 (236)
T 2zog_A           45 IRRMMEVAAADVQRLGGSVELVDIGKQKLPDGSEIPLPPILLGKLGSDPQKKTVCIYGHLDVQPAAL-------------  111 (236)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEECCCEEECTTSCEEECCCEEEEEECCCTTSCEEEEEEECCBCCCCG-------------
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCC-------------
T ss_conf             9999999999999769959999457754666666788758999967899989899975764018988-------------


Q ss_pred             HHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHH------CCCCCEEECCCCCCCEE
Q ss_conf             996689870038978717897089821444217989998709885542888999863------03653044338742111
Q gi|254780662|r 1004 LFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAI------LMASVDLLWFGGIGTYI 1077 (1576)
Q Consensus      1004 Lf~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~i------L~a~vDLlw~gGiGTYv 1077 (1576)
                           ...|..+.-.....||.++.|.+-+-            ..+...--+.++++      +.-++-++++++     
T Consensus       112 -----~~~~~~~p~~~~~~~~~~~g~Ga~D~------------k~gva~~l~a~~~L~~~~~~~~~~I~~~f~~~-----  169 (236)
T 2zog_A          112 -----EDGWDSEPFTLVEREGKLYGRGSTDD------------KGPVAGWMNALEAYQKTGQEIPVNLRFCLEGM-----  169 (236)
T ss_dssp             -----GGTCSSCTTSCEEETTEEESTTTTTT------------HHHHHHHHHHHHHHHHTTCCCSSEEEEEEESC-----
T ss_pred             -----CCCCCCCCCCEEECCCCEEEECCCCC------------CCCHHHHHHHHHHHHHCCCCCCCCEEEEEECC-----
T ss_conf             -----65445577521662783783063356------------65664666788886410126898638986123-----


Q ss_pred             CCCCCCCCCCCCCC--CCCEECCCCCEEEEEEEECCCCCCC
Q ss_conf             26898620015210--0000025883046899855510307
Q gi|254780662|r 1078 RAPRENNADIGDKG--NNILRVTADKVRAKVIGEGANLGLT 1116 (1576)
Q Consensus      1078 ka~~e~~~~vgd~a--nd~~rv~g~~lr~kvi~EG~NLg~T 1116 (1576)
                         .|.... |-++  .+.....+.+.-+-+++|++++|..
T Consensus       170 ---EE~G~~-Gs~~~v~~~~~~~~~~~~~~i~~ep~~~~~~  206 (236)
T 2zog_A          170 ---EESGSE-GLDELIFAQKDKFFKDVDYVCISDNYWLGAH  206 (236)
T ss_dssp             ---GGGTCT-THHHHHHHTTTTTTTTCCEEEECCCBCSCTT
T ss_pred             ---CHHHHH-HHHHHHHHHHHHHHCCCCCEEECCCCCCCCC
T ss_conf             ---112455-5899999978763123331120367656878


No 57 
>>2bsz_A Arylamine N-acetyltransferase 1; acyltransferase, complete proteome; 2.0A {Rhizobium loti} (A:51-143,A:184-203)
Probab=29.28  E-value=19  Score=11.67  Aligned_cols=32  Identities=9%  Similarity=0.027  Sum_probs=18.2

Q ss_pred             EEEECCCCCCCCCCCCEEEEEEECCCCCHHHH
Q ss_conf             78724765558998865799994787743899
Q gi|254780662|r   71 CIDIREVEGINPSGISISIITVIVDNIPFLYQ  102 (1576)
Q Consensus        71 ~~v~~p~~~~~gw~s~~tvi~iv~dD~PfLvD  102 (1576)
                      -+++++.........+|-++-|-.|+..||||
T Consensus        46 arV~~~~~~~~~~~~~H~~liV~idg~~YLvD   77 (113)
T 2bsz_A           46 ARVLWGQSEDAITARSHMLLRVELDGRTYIAD   77 (113)
T ss_dssp             EEECSSCCSSSSCCCCEEEEEEEETTEEEEEC
T ss_pred             EEEECCCCCCCCCCCCCEEEEEEECCEEEEEE
T ss_conf             99963788889999878899999899249984


No 58 
>>1xou_A ESPA; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} (A:)
Probab=29.26  E-value=13  Score=13.10  Aligned_cols=31  Identities=6%  Similarity=0.068  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999977999999999999985
Q gi|254780662|r  166 KQLIFIIEQLKLVSQDSREMLASLEKMQKSF  196 (1576)
Q Consensus       166 ~~L~~VL~dVr~aV~Dw~aM~~rl~~l~~~L  196 (1576)
                      -.|+...+....+|.--.-|+..+.+....+
T Consensus       158 LqlQk~mQtyN~~vs~~sslqs~~~e~~~sI  188 (192)
T 1xou_A          158 LEIQQXSNTLNLLTSARSDXQSLQYRTISGI  188 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999989999888887541


No 59 
>>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} (A:1-126)
Probab=29.21  E-value=17  Score=12.04  Aligned_cols=59  Identities=8%  Similarity=-0.021  Sum_probs=38.0

Q ss_pred             CEEEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCC
Q ss_conf             64599605886332443111276620899973943686777881379899999996689870038978717897
Q gi|254780662|r  951 PFTVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRKVLSKGG 1024 (1576)
Q Consensus       951 ~fTvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~lprssw~dyd~~liS~gG 1024 (1576)
                      .+-++|.|.+.-....+.+-.++++.++|.+       |++|+....+.        +...|-+.-.+++...+
T Consensus         7 rv~iiG~G~~g~~~~~~~~~~~~~~~iv~v~-------d~~~~~~~~~~--------~~~~~~~~~~~l~~~~~   65 (126)
T 3fhl_A            7 KTGLAAFGMSGQVFHAPFISTNPHFELYKIV-------ERSKELSKERY--------PQASIVRSFKELTEDPE   65 (126)
T ss_dssp             EEEESCCSHHHHHTTHHHHHHCTTEEEEEEE-------CSSCCGGGTTC--------TTSEEESCSHHHHTCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHCCCCEEEEEE-------CCCHHHHHHHC--------CCCCCCCCHHHHHCCCC
T ss_conf             8999927899999999999849793899998-------29999999867--------89984289999965999


No 60 
>>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} (A:)
Probab=28.56  E-value=20  Score=11.57  Aligned_cols=35  Identities=20%  Similarity=0.295  Sum_probs=30.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             88898999999971479999999999875288877
Q gi|254780662|r  656 VTWSQNFIARVLSKNPTISQLLFSLFRYRFDPSLS  690 (1576)
Q Consensus       656 ~~~s~~~i~~~l~~~p~~~~~l~~~F~~rFdP~~~  690 (1576)
                      .+.+.+.|-..|.+.|-.++.|+.-|..||-+-.+
T Consensus        17 ~~iTEe~VRryL~rkP~Tt~eLl~KFk~k~t~l~~   51 (82)
T 1nha_A           17 VQVTEDAVRRYLTRKPMTTKDLLKKFQTKKTGLSS   51 (82)
T ss_dssp             CCCCHHHHHHHHHHSCBCHHHHHHHTTSSCCSSCH
T ss_pred             CCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCC
T ss_conf             77689999999971897399999999862467885


No 61 
>>3d9w_A Putative acetyltransferase; arylamine N-acetyltransferase, NAT, X-RAY diffraction, acyltransferase; 2.70A {Nocardia farcinica} (A:60-216)
Probab=28.41  E-value=11  Score=13.80  Aligned_cols=35  Identities=11%  Similarity=0.121  Sum_probs=22.0

Q ss_pred             CEEEEECCCCCCCCCCCCEEEEEEECCCCCHHHHH
Q ss_conf             71787247655589988657999947877438999
Q gi|254780662|r   69 ACCIDIREVEGINPSGISISIITVIVDNIPFLYQS  103 (1576)
Q Consensus        69 ~~~~v~~p~~~~~gw~s~~tvi~iv~dD~PfLvDS  103 (1576)
                      ..-+|+++.....++...|.++.+-.|+.+||||-
T Consensus        44 ~~arV~~~~~~~~~~~h~~l~V~v~~~~~~ylvDV   78 (157)
T 3d9w_A           44 HTGRVTMGAGGLRPATHALLRVTTADDDRVWMCDV   78 (157)
T ss_dssp             EEEEECTTCCSCCCEEEEEEEEECSSCSCEEEECC
T ss_pred             EEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEEC
T ss_conf             98999768888899765689999877996999825


No 62 
>>2ija_A Arylamine N-acetyltransferase 1; arylamide acetylase 1, structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} PDB: 2pqt_A* 2pfr_A* (A:)
Probab=28.37  E-value=19  Score=11.81  Aligned_cols=108  Identities=9%  Similarity=0.048  Sum_probs=59.3

Q ss_pred             HHHHHHHHHCCCHHHH-------HCCCHHHHHHHHHH-------------HHHHHHC--CCCCCCEEEEECCCCCCCCCC
Q ss_conf             8899988631997897-------44998999999999-------------9999840--589887178724765558998
Q gi|254780662|r   27 SFSASAMFGEASIDDL-------EKYTPQMLALTSVV-------------SYDIFAG--WDHSSACCIDIREVEGINPSG   84 (1576)
Q Consensus        27 ~~fa~~~f~~~~~eDl-------~~~~~~~l~~~~~~-------------~~~~~~~--r~~~~~~~~v~~p~~~~~gw~   84 (1576)
                      ..+.++.-.++|-|-+       ...++++++.-...             ...+++.  ....-..-+|.++.....++.
T Consensus        30 ~~L~~ah~~~iPfeNld~~~~~~~~l~~~~l~~kiv~~~rGG~C~e~N~lf~~lL~~LGf~v~~~~arV~~~~~~~~~~~  109 (295)
T 2ija_A           30 TDILQHQIRAVPFENLNIHCGDAXDLGLEAIFDQVVRRNRGGWCLQVNHLLYWALTTIGFETTXLGGYVYSTPAKKYSTG  109 (295)
T ss_dssp             HHHHHHHHHHSCEECTTGGGTCCCCCSHHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEECSS
T ss_pred             HHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCC
T ss_conf             99999984438806714650998668989999999864777254536799999999869907999899970788889998


Q ss_pred             CCEEEEEEECCCCCHHHHHHHHH-------HHHCCCCEEEEECCEEEEEECCCCCEE
Q ss_conf             86579999478774389999999-------997799127998464899988997374
Q gi|254780662|r   85 ISISIITVIVDNIPFLYQSIIGE-------IVARCRNLTMAVHPVFTKDKNCDWQLY  134 (1576)
Q Consensus        85 s~~tvi~iv~dD~PfLvDSv~~~-------l~~~~~~i~~~~HPvl~V~RD~~G~L~  134 (1576)
                      .+|.++-|-.|+.+||||-=-+.       |.-..-.++...+..+.+.++..|...
T Consensus       110 ~~H~~l~V~~~~~~ylvDvGfG~~~~~~~Pl~l~~~~~~~~~~~~~Rl~~~~~~~~~  166 (295)
T 2ija_A          110 XIHLLLQVTIDGRNYIVDAGSGRSYQXWQPLELISGKDQPQVPCVFRLTEENGFWYL  166 (295)
T ss_dssp             CCEEEEEEEETTEEEEECSCCCGGGCCSSCEECCTTCEEECSSCEEEEEEETTEEEE
T ss_pred             CCEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEECCCEEE
T ss_conf             752899999799159984356777674777226899738448944887884684057


No 63 
>>1o08_A Beta-phosphoglucomutase; haloacid dehalogenase superfamily, phosphotransferase, pentavalent phosphate intermediate, isomerase; HET: G16; 1.20A {Lactococcus lactis} (A:14-90)
Probab=27.94  E-value=20  Score=11.49  Aligned_cols=50  Identities=10%  Similarity=0.040  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             9999999999881888898999999971479999999999875288877520
Q gi|254780662|r  642 SVLRSYARYLRQASVTWSQNFIARVLSKNPTISQLLFSLFRYRFDPSLSDQE  693 (1576)
Q Consensus       642 ~~lra~~~yl~Q~~~~~s~~~i~~~l~~~p~~~~~l~~~F~~rFdP~~~~~~  693 (1576)
                      .-.+|+.+.+.+.|++||.......+.--|.  ..+++.+-.++.+..+..+
T Consensus         6 lH~~Aw~~~~~~~g~~~~~~~~~~~~~G~~~--~~~~~~i~~~~g~~~~~ee   55 (77)
T 1o08_A            6 YHFRAWKALAEEIGINGVDRQFNEQLKGVSR--EDSLQKILDLADKKVSAEE   55 (77)
T ss_dssp             HHHHHHHHHHHHTTCCCCCHHHHTTTTTCCH--HHHHHHHHTTSSSCCCHHH
T ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHCCCCH--HHHHHHHHHHCCCCCCHHH
T ss_conf             9999999999985999886999999749867--8888888763034567999


No 64 
>>1fx3_A SECB, protein-export protein SECB; protein trasnport, translocation, transport protein; 2.50A {Haemophilus influenzae} (A:)
Probab=27.67  E-value=20  Score=11.45  Aligned_cols=42  Identities=24%  Similarity=0.207  Sum_probs=31.1

Q ss_pred             EEEEEEEEEEECHHH-----------HCCCHHHCCHHHHHHHHHHHHCCCCCC
Q ss_conf             877878852100476-----------268855462089999999997488988
Q gi|254780662|r  309 LIGELHVVGFFTRLV-----------YSQRASKIPLLREKIVKVQNLLNFHPN  350 (1576)
Q Consensus       309 viGE~RFlGLFTSsA-----------Y~~sv~~IPiLRrKV~~VL~~sGf~p~  350 (1576)
                      .+.|.-..|+|+-.-           .+....=-|++|+-|..+..++||+|=
T Consensus        83 F~iev~~~GiF~i~~~~~e~~~~~L~i~~p~iLfPy~Re~Is~lt~~~gfpPl  135 (169)
T 1fx3_A           83 FICEVKQAGVFTISGLEDVQMAHCLTSQCPNMLFPYARELVSNLVNRGTFPAL  135 (169)
T ss_dssp             CEEEEEEEEEEEEESCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             EEEEEEEEEEEEECCCCCHHHHCCHHHCCHHHHCHHHHHHHHHHHHHCCCCCC
T ss_conf             88862389999751466022201032237588775899999999984799985


No 65 
>>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium LT2} (A:1-149)
Probab=27.43  E-value=21  Score=11.42  Aligned_cols=99  Identities=11%  Similarity=0.144  Sum_probs=58.5

Q ss_pred             CCEEEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEEE
Q ss_conf             86459960588633244311127662089997394368677788137989999999668987003897871789708982
Q gi|254780662|r  950 TPFTVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRKVLSKGGMIISR 1029 (1576)
Q Consensus       950 ~~fTvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~lprssw~dyd~~liS~gGgv~~r 1029 (1576)
                      =.+-++|.|.+.....-.-+..+++..+++++       ||+|+-+..+.++   |..+-..+.||+.-+-..+-.++--
T Consensus        24 ~ri~iiG~G~~g~~~~~~~~~~~~~~~i~~i~-------~~~~~~a~~~~~~---~~~~~~~~~~~~~~l~~~~iD~V~i   93 (149)
T 3ec7_A           24 LKAGIVGIGXIGSDHLRRLANTVSGVEVVAVC-------DIVAGRAQAALDK---YAIEAKDYNDYHDLINDKDVEVVII   93 (149)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCTTEEEEEEE-------CSSTTHHHHHHHH---HTCCCEEESSHHHHHHCTTCCEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCCCEEEEEE-------CCCHHHHHHHHHH---HCCCCCCCCCHHHHHCCCCCCEEEE
T ss_conf             14999998099999999998469997899997-------7999999999998---2999742398999963889888974


Q ss_pred             CCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCC
Q ss_conf             1444217989998709885542888999863036530443387421
Q gi|254780662|r 1030 KEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGT 1075 (1576)
Q Consensus      1030 ~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGT 1075 (1576)
                      ..                 ..-.-.+.+...+++-.++|.--.+++
T Consensus        94 ~t-----------------p~~~h~~~~~~~l~~g~~V~~EKP~~~  122 (149)
T 3ec7_A           94 TA-----------------SNEAHADVAVAALNANKYVFCEKPLAV  122 (149)
T ss_dssp             CS-----------------CGGGHHHHHHHHHHTTCEEEEESSSCS
T ss_pred             CC-----------------CCCCCCHHHHHCCCCCCHHHCCCCHHH
T ss_conf             14-----------------222200111100243301011431145


No 66 
>>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* (A:150-330)
Probab=27.08  E-value=21  Score=11.37  Aligned_cols=20  Identities=30%  Similarity=0.315  Sum_probs=14.0

Q ss_pred             CCCEEEEEEECCCCCCCEEE
Q ss_conf             38657998405423304042
Q gi|254780662|r  771 GVEVEGVHLRCGKIARGGLR  790 (1576)
Q Consensus       771 sp~~eGvHlR~g~vARGGlR  790 (1576)
                      +..+-|||+|.|+-..++-.
T Consensus        19 ~~~~igvHIRrgD~~~~~~~   38 (181)
T 2hhc_A           19 GHSIIGVHVRHGNGEDIMEH   38 (181)
T ss_dssp             TSEEEEEEECC---------
T ss_pred             CCCEEEEEEECCCCCCCCCC
T ss_conf             46637999966775445445


No 67 
>>2o7s_A DHQ-SDH, bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase; NADPH, dehydroshikimate, bifunctional enzyme, oxidoreductase; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* (A:334-523)
Probab=26.81  E-value=13  Score=13.12  Aligned_cols=42  Identities=12%  Similarity=0.006  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCC
Q ss_conf             999999999808996548645996058863324431112766
Q gi|254780662|r  933 WETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGMLLSRK  974 (1576)
Q Consensus       933 w~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgmLls~~  974 (1576)
                      |..+.+-+++.+.+.+...+-|+|.|+|+.-+.-+-.-..-+
T Consensus        15 ~~g~~~~l~~~~~~~~~k~vlviGaG~~~~~~~~~L~~~g~~   56 (190)
T 2o7s_A           15 SSGDPSSVPSSSSPLASKTVVVIGAGGAGKALAYGAKEKGAK   56 (190)
T ss_dssp             ------------------CEEEECCSHHHHHHHHHHHHHCC-
T ss_pred             CCCCCHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCE
T ss_conf             113301210354147778999863266102002125535845


No 68 
>>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} (I:)
Probab=26.70  E-value=21  Score=11.32  Aligned_cols=16  Identities=31%  Similarity=0.490  Sum_probs=10.2

Q ss_pred             HHHHHHHHHCCCCCCC
Q ss_conf             9999999980899654
Q gi|254780662|r  934 ETVKRHFREMDIDIQS  949 (1576)
Q Consensus       934 ~~v~rhfrelg~D~q~  949 (1576)
                      -+|++..+|+|||+..
T Consensus        11 P~aRklA~e~gidl~~   26 (49)
T 1w85_I           11 PSVRKYAREKGVDIRL   26 (49)
T ss_dssp             HHHHHHHHHTTCCTTT
T ss_pred             HHHHHHHHHCCCCHHH
T ss_conf             9999999994998888


No 69 
>>2qva_A GM27569P; translin, D. melanogaster, DNA binding protein; 3.40A {Drosophila melanogaster} PDB: 2qrx_A (A:)
Probab=26.58  E-value=21  Score=11.30  Aligned_cols=34  Identities=15%  Similarity=0.046  Sum_probs=20.9

Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999872887887899999999999999999999
Q gi|254780662|r 1488 LLSVAHNVVVDDHYENLALSAGLDWMYSARREMI 1521 (1576)
Q Consensus      1488 l~~~i~~l~~~~~W~~lAr~al~ddl~~~~r~lt 1521 (1576)
                      +|-+++.+..+|.=...-...+..++|.....|.
T Consensus       165 ~R~ain~v~~gd~~~~~~i~~f~~~ly~~f~~l~  198 (247)
T 2qva_A          165 SRFATNSVTMGDYERSLNISHFIGDLNTGFRLLN  198 (247)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9999998623666789999999999999998527


No 70 
>>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K (K:)
Probab=26.23  E-value=21  Score=11.25  Aligned_cols=16  Identities=6%  Similarity=0.229  Sum_probs=9.2

Q ss_pred             HHHHHHHHHCCCCCCC
Q ss_conf             9999999980899654
Q gi|254780662|r  934 ETVKRHFREMDIDIQS  949 (1576)
Q Consensus       934 ~~v~rhfrelg~D~q~  949 (1576)
                      -+|++..+|+|||+..
T Consensus        14 P~aRklA~e~gidl~~   29 (64)
T 2f60_K           14 PAARNILEKHSLDASQ   29 (64)
T ss_dssp             HHHHHHHHHTTCCGGG
T ss_pred             HHHHHHHHHCCCCHHH
T ss_conf             9999999993998878


No 71 
>>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} (A:1138-1255)
Probab=25.73  E-value=15  Score=12.72  Aligned_cols=75  Identities=19%  Similarity=0.224  Sum_probs=35.7

Q ss_pred             CCEEEEEECCCEEEECCCCCC---CCCHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCC
Q ss_conf             620899973943686777881---37989999999668987003897871789708982144421798999870988554
Q gi|254780662|r  974 KIQLVAAFDHSDIFIDPDPNS---ETTFDERKRLFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQI 1050 (1576)
Q Consensus       974 ~i~lvaafdh~hif~DP~PD~---~~s~~Er~RLf~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~ 1050 (1576)
                      |+.|--......|++||+|..   +.+..=-.--|+.|.-.- .+++..+|+==-       +|.|..++     ....-
T Consensus         6 ~TTL~~vt~~teIyYDPdp~~TvIeeD~e~V~~y~e~pDe~~-~~~~~~~SpWlL-------RieLdr~~-----m~dK~   72 (118)
T 3h0g_A            6 HTTLSTVTSATEIHYDPDPQDTVIEEDKDFVEAFFAIPDEEV-EENLYKQSPWLL-------RLELDRAK-----MLDKK   72 (118)
T ss_dssp             CCSSCSCCSCEEEECCCSTTCCCCSSSCSHHHHHHHTTCSST-TCSSCSCCCCEE-------EEECCTTS-----STTTT
T ss_pred             EEEEEEEECCEEEEECCCCCCEEEEEECCEEEEEEEECCCEE-EEEECCCCCEEE-------EEEECHHH-----CCCCC
T ss_conf             421066621318998179886799960553888875234133-210002576169-------99843100-----35766


Q ss_pred             CCHHHHHHHHC
Q ss_conf             28889998630
Q gi|254780662|r 1051 ATPSEIISAIL 1061 (1576)
Q Consensus      1051 ~~p~eli~~iL 1061 (1576)
                      ++-.+....|-
T Consensus        73 L~m~~Ia~~I~   83 (118)
T 3h0g_A           73 LSMSDVAGKIA   83 (118)
T ss_dssp             CCHHHHTTSGG
T ss_pred             CCEEECCCHHH
T ss_conf             31110320354


No 72 
>>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} (A:111-270)
Probab=25.61  E-value=22  Score=11.17  Aligned_cols=61  Identities=10%  Similarity=0.053  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHH
Q ss_conf             999999999808996548645996058863324431112766208999739436867778813798999999
Q gi|254780662|r  933 WETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRL 1004 (1576)
Q Consensus       933 w~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RL 1004 (1576)
                      |.....-+++.+.+++...+-|+|.|+|+.-|.-.  |.+...+-|.         .-+++.+..++++...
T Consensus         2 ~~g~~~~l~~~~~~~~~k~vLViGaGg~~~~v~~~--L~~~g~~~I~---------~r~~~~a~~la~~~~~   62 (160)
T 1nvt_A            2 GIGARMALEEEIGRVKDKNIVIYGAGGAARAVAFE--LAKDNNIIIA---------NRTVEKAEALAKEIAE   62 (160)
T ss_dssp             HHHHHHHHHHHHCCCCSCEEEEECCSHHHHHHHHH--HTSSSEEEEE---------CSSHHHHHHHHHHHHH
T ss_pred             EEEEEEEHHHCCCCCCCCEEEEECCHHHHHHHHHH--HHCCCEEEEE---------ECCHHHHHHHHHHHHH
T ss_conf             20000001110355678759997523889999999--8508869999---------3888999999999998


No 73 
>>1ou9_A Stringent starvation protein B homolog; SSRA peptide-binding protein, homodimer, transport protein; 1.80A {Haemophilus influenzae} (A:)
Probab=25.38  E-value=22  Score=11.13  Aligned_cols=15  Identities=20%  Similarity=0.656  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHCCEEE
Q ss_conf             999999997289188
Q gi|254780662|r  209 ALTFLNWLNEDNFQF  223 (1576)
Q Consensus       209 a~aFL~WL~ddhFtF  223 (1576)
                      ..++++|+.|+.||+
T Consensus        13 iRa~y~w~~dn~~tP   27 (129)
T 1ou9_A           13 LRAYYDWLVDNSFTP   27 (129)
T ss_dssp             HHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHHCCCCC
T ss_conf             999999998788986


No 74 
>>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckstrin homology domain, coiled coil, guanine-nucleotide releasing factor; HET: 4IP PGE PE5; 1.90A {Mus musculus} (A:90-203,A:330-347)
Probab=25.12  E-value=22  Score=11.10  Aligned_cols=63  Identities=17%  Similarity=0.270  Sum_probs=50.9

Q ss_pred             HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH--------HHCCHHHHHHHHHHHHCCCCH
Q ss_conf             778999828999999999999999984579998478999988--------839989998889997708317
Q gi|254780662|r 1239 REEVSLSRPEIAILLAYAKLKLSEQLLDSTLIDDPFFFSILL--------SYFPRQLSELYSEDIMNHQLR 1301 (1576)
Q Consensus      1239 ~~g~gltrpelavLlay~K~~l~~~l~~s~l~dd~~~~~~l~--------~yfP~~l~~~f~~~i~~H~Lr 1301 (1576)
                      ........++.+..|||+-+.|-.++-.+.+..---+..+..        .-||..+-+..-+.|..+|+.
T Consensus        38 ~Np~~~~s~D~~y~LaysiimLnTDlHn~~vk~kMt~~~Fikn~r~~~~~~~~~~e~L~~iYd~I~~~e~~  108 (132)
T 2r09_A           38 CNPGVFQSTDTCYVLSFAIIXLNTSLHNHNVRDKPTAERFITXNRGINEGGDLPEELLRNLYESIKNEPFK  108 (132)
T ss_dssp             HSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHTTTTBTTBCCCHHHHHHHHHHHHHSCCC
T ss_pred             HCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             59886788783553999999986650033456788899999972377887888999999999998626653


No 75 
>>2vfm_A Bifunctional tail protein; P22 tailspike protein, salmonella bacteriophage P22, protein folding, protein stability; 1.50A {Enterobacteria phage P22} PDB: 2vfp_A 2vfo_A 2vfq_A 2vfn_A 1tsp_A 1qrb_A 1qq1_A 1qrc_A 1tyu_A* 1tyv_A 1tyw_A* 1tyx_A* 1qa2_A 1clw_A 1qa3_A 1qa1_A (A:16-92,A:137-441)
Probab=25.02  E-value=14  Score=12.77  Aligned_cols=18  Identities=33%  Similarity=0.359  Sum_probs=9.1

Q ss_pred             EECCCEEEECCCCCCCCC
Q ss_conf             973943686777881379
Q gi|254780662|r  980 AFDHSDIFIDPDPNSETT  997 (1576)
Q Consensus       980 afdh~hif~DP~PD~~~s  997 (1576)
                      ..|+-+.=-||+-.|+.+
T Consensus       224 VWDGFDLGaD~~m~pE~D  241 (382)
T 2vfm_A          224 VWDGFDLGADTDMNPELD  241 (382)
T ss_dssp             SSCSEEECCSCSSSCCSC
T ss_pred             CCCCCCCCCCCCCCCCCC
T ss_conf             113533568889788889


No 76 
>>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase, structural genomics; HET: MSE; 1.90A {Methylobacillus flagellatus KT} (A:230-332)
Probab=24.51  E-value=23  Score=11.01  Aligned_cols=22  Identities=18%  Similarity=0.588  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf             999999999980899654864599
Q gi|254780662|r  932 AWETVKRHFREMDIDIQSTPFTVA  955 (1576)
Q Consensus       932 aw~~v~rhfrelg~D~q~~~fTvv  955 (1576)
                      ...-+++-|+|-||+  .+||-+|
T Consensus        32 vL~kir~KY~eYGI~--ekPfVvV   53 (103)
T 3k1t_A           32 LLAKIRRKYAEYGVK--QEPFVIV   53 (103)
T ss_dssp             HHHHHHHHHHHHTCC--SCCCEEE
T ss_pred             HHHHHHHHHHHCCCC--CCCEEEE
T ss_conf             999999999971999--8966999


No 77 
>>1ou8_A Stringent starvation protein B homolog; peptide-binding pocket, protein-peptide complex, homodimer, transport protein; 1.60A {Haemophilus influenzae} (A:)
Probab=24.20  E-value=23  Score=10.96  Aligned_cols=15  Identities=20%  Similarity=0.656  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHCCEEE
Q ss_conf             999999997289188
Q gi|254780662|r  209 ALTFLNWLNEDNFQF  223 (1576)
Q Consensus       209 a~aFL~WL~ddhFtF  223 (1576)
                      ..++++|+.|+.+|+
T Consensus        13 ira~y~w~~dn~~tP   27 (111)
T 1ou8_A           13 LRAYYDWLVDNSFTP   27 (111)
T ss_dssp             HHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHHCCCCC
T ss_conf             999999998689986


No 78 
>>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} (A:1-79)
Probab=23.77  E-value=24  Score=10.90  Aligned_cols=65  Identities=17%  Similarity=0.026  Sum_probs=40.8

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCCCHHHHHHHHH
Q ss_conf             57999947877438999999999779912799846489998899737423677887663369999957999899999999
Q gi|254780662|r   87 ISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKITPEEAIEIKK  166 (1576)
Q Consensus        87 ~tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~~~e~~~~L~~  166 (1576)
                      +| +.+...|.|=++-.|+..+.++|+.|..+.     +.+.++|.              .-+.+.+...+.+++..+.+
T Consensus         4 ~~-i~i~~~d~pGvLa~It~v~~~~~vNI~~~~-----~~~~~~~~--------------~~~~~~~~~~~~~~l~~i~~   63 (79)
T 2f1f_A            4 RI-LSVLLENESGALSRVIGLFSQRGYNIESLT-----VAPTDDPT--------------LSRMTIQTVGDEKVLEQIEK   63 (79)
T ss_dssp             EE-EEEEEECCTTHHHHHHHHHHTTTCCCSEEE-----EEECSCSS--------------EEEEEEEEESCHHHHHHHHH
T ss_pred             EE-EEEEEECCCCHHHHHHHHHHCCCCCEEEEE-----EECCCCCC--------------EEEEEEEEECCHHHHHHHHH
T ss_conf             99-999997786799999999860675556888-----60336897--------------68999998569899999999


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|254780662|r  167 QLIFI  171 (1576)
Q Consensus       167 ~L~~V  171 (1576)
                      .|+++
T Consensus        64 ~l~~i   68 (79)
T 2f1f_A           64 QLHKL   68 (79)
T ss_dssp             HHHHS
T ss_pred             HHHCC
T ss_conf             99617


No 79 
>>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus HB8} (C:)
Probab=23.52  E-value=24  Score=10.86  Aligned_cols=21  Identities=29%  Similarity=0.688  Sum_probs=13.1

Q ss_pred             HHHHHHHHHCCCCCCCCCEEEEEEC
Q ss_conf             9999999980899654864599605
Q gi|254780662|r  934 ETVKRHFREMDIDIQSTPFTVAGVG  958 (1576)
Q Consensus       934 ~~v~rhfrelg~D~q~~~fTvvgiG  958 (1576)
                      -+|++.-+|+|+|+..    |.|+|
T Consensus         4 P~arklA~e~gidl~~----v~GTG   24 (40)
T 2eq8_C            4 PSIRRLARELGVDLTR----LRGTG   24 (40)
T ss_dssp             HHHHHHHHHHTCCGGG----CCCCS
T ss_pred             HHHHHHHHHCCCCHHH----CCCCC
T ss_conf             8999999994998988----82779


No 80 
>>2bw2_A Bypass of forespore C; sporulation, signaling protein, BOFC, sigmak checkpoint; NMR {Bacillus subtilis} (A:68-140)
Probab=23.37  E-value=24  Score=10.84  Aligned_cols=42  Identities=10%  Similarity=-0.022  Sum_probs=31.1

Q ss_pred             CCCCCEEECCCCCCCC--CCEEEEEEEECCCCHHHHHHHHHHHH
Q ss_conf             8997374236778876--63369999957999899999999999
Q gi|254780662|r  128 NCDWQLYSPESCGIAQ--KQISLIQIHCLKITPEEAIEIKKQLI  169 (1576)
Q Consensus       128 D~~G~L~~v~~~~~~~--~~ES~I~Ieidr~~~e~~~~L~~~L~  169 (1576)
                      +++|.|.-+++.+..+  .--||.+|.+.++.....++|++.|.
T Consensus        11 s~dG~LsiF~G~P~~~~~vIqSFFQID~~kLES~~~~~L~~GIr   54 (73)
T 2bw2_A           11 SDNGVISTFHGRPEPASEPIQSFFQIDLERLESHMQKNLLKGIP   54 (73)
T ss_dssp             ETTTEEEEBSSSCSTTSCBSCCCCCCCTTTSCHHHHHHHHHCCS
T ss_pred             CCCCEEEEEECCCCCCCCEEEEECCCCHHHCCHHHHHHHHCCCC
T ss_conf             16988999846987784337886126458899989999985981


No 81 
>>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} (A:86-197)
Probab=23.30  E-value=24  Score=10.83  Aligned_cols=61  Identities=16%  Similarity=0.215  Sum_probs=45.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC-C-HHHHHHH---H-----HHCCHHHHHHHHHHHHCCCCH
Q ss_conf             8999828999999999999999984579998-4-7899998---8-----839989998889997708317
Q gi|254780662|r 1241 EVSLSRPEIAILLAYAKLKLSEQLLDSTLID-D-PFFFSIL---L-----SYFPRQLSELYSEDIMNHQLR 1301 (1576)
Q Consensus      1241 g~gltrpelavLlay~K~~l~~~l~~s~l~d-d-~~~~~~l---~-----~yfP~~l~~~f~~~i~~H~Lr 1301 (1576)
                      ......++.+..|||+-+.|-.++-.+.+.. . .-++.+.   .     .-||..+-+..-+.|..+|++
T Consensus        40 ~~~~~~~d~~~~l~~siimLnTdlHn~~v~~~~kmt~~~Fi~n~~~~~~~~~~~~~~L~~iY~~I~~~~~~  110 (112)
T 1xsz_A           40 PDVVSNADAAYLLAFQTIMLNTDLHNPSIPEKNKMTVDGLKRNLRGGNNGGDFDAKFLEELYSEIKAKPFE  110 (112)
T ss_dssp             TTTSSSHHHHHHHHHHHHHHHHHHHCTTSCGGGSCCHHHHHHHTTTTBTTBCCCHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             88789801899999999996421358666554668899999986267787889999999999999718642


No 82 
>>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} (I:)
Probab=23.14  E-value=24  Score=10.81  Aligned_cols=57  Identities=25%  Similarity=0.229  Sum_probs=41.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC----CCCCCCCCHHHCCCCCEEEEEEC
Q ss_conf             3101146789999999999808996548645996058----86332443111276620899973
Q gi|254780662|r  923 KKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGD----MSGDVFGNGMLLSRKIQLVAAFD  982 (1576)
Q Consensus       923 K~mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGd----msGDVfGNgmLls~~i~lvaafd  982 (1576)
                      +++||+|..--+-.......++++.-.+++|++.--|    =+.|-|-   -|..++.|+....
T Consensus        30 ~k~GV~A~sL~eL~~K~~~kl~l~~~~~~~~lvLeeDGTeVddEeYF~---tLp~nT~lv~L~~   90 (100)
T 1f2r_I           30 DQHGVAASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFL---CLPSNTKFVALAC   90 (100)
T ss_dssp             EEEEEEESSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSS---SSCSCCEEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEECCHHHHH---CCCCCCEEEEECC
T ss_conf             404688389999999999983899765550899937897985588884---1788878999779


No 83 
>>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genomics; 1.85A {Pyrococcus horikoshii OT3} (A:1-69,A:202-263)
Probab=23.07  E-value=24  Score=10.80  Aligned_cols=53  Identities=23%  Similarity=0.254  Sum_probs=35.8

Q ss_pred             HHHCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEE-----EEEECC-CCCCCCCC
Q ss_conf             98808998501105699998843101146789999999999808996548645-----996058-86332443
Q gi|254780662|r  901 AQEAKFWLDDAFASGGSMGYDHKKMGITARGAWETVKRHFREMDIDIQSTPFT-----VAGVGD-MSGDVFGN  967 (1576)
Q Consensus       901 a~~~gfwlgdAFaSGgs~GydHK~mGITarGaw~~v~rhfrelg~D~q~~~fT-----vvgiGd-msGDVfGN  967 (1576)
                      .++.|+.+.  ++|++|.=            .-+.+..+++++|++...+.+-     ++.||| +.-|+-|-
T Consensus        29 L~~~G~~~~--ivTN~~~~------------~~~~~~~~L~~lg~~~~~~~i~~sp~~~~~VGD~~~~Di~~A   87 (131)
T 1zjj_A           29 LKERGIPFA--FLTNNSTK------------TPEMYREKLLKMGIDVSSSIIITSGEELWMVGDRLDTDIAFA   87 (131)
T ss_dssp             HHHHTCCEE--EEESCCSS------------CHHHHHHHHHTTTCCCCGGGEEEHTCEEEEEESCTTTHHHHH
T ss_pred             HHHCCCCEE--EEECCCCC------------CHHHHHHHHHHCCCCCCCCEEECHCCEEEEECCCHHHHHHHH
T ss_conf             997799689--99489999------------999999999976998881547511430799768817789999


No 84 
>>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle transport, structural genomics, structural genomics consortium, SGC; HET: ANP; 1.90A {Homo sapiens} (A:1-150)
Probab=22.48  E-value=23  Score=10.98  Aligned_cols=14  Identities=43%  Similarity=0.724  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             57888889998998
Q gi|254780662|r  795 AADYRTEVLGLVRA  808 (1576)
Q Consensus       795 ~edfrtEvlgL~ka  808 (1576)
                      .||||+.++||+++
T Consensus       101 ~ed~rnlllGl~yg  114 (150)
T 2p0a_A          101 GEDYRSLVIGLQYG  114 (150)
T ss_dssp             TEECHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHC
T ss_conf             42099999999988


No 85 
>>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolase, structural genomics; HET: MSE; 2.10A {Clostridium difficile 630} (A:1-84,A:199-274)
Probab=22.37  E-value=25  Score=10.69  Aligned_cols=55  Identities=18%  Similarity=0.212  Sum_probs=35.3

Q ss_pred             CCCCCHHCCCCCCCCCCCCCCCCH--HHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCC
Q ss_conf             998501105699998843101146--78999999999980899654864599605886332
Q gi|254780662|r  906 FWLDDAFASGGSMGYDHKKMGITA--RGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDV  964 (1576)
Q Consensus       906 fwlgdAFaSGgs~GydHK~mGITa--rGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDV  964 (1576)
                      +-+...|++.|+.-|++++.....  .+-...++....++|++++.    ++.+||=..|+
T Consensus        59 lg~~~~i~~nGa~i~~~~~~~~~~~~~~K~~~l~~~~~~~~~~~~~----~~~vGD~~nD~  115 (160)
T 3fzq_A           59 LGVDGYIAGGGNYIQYHGELLYNQSFFHKGKAIKRLQERLGVTQKE----TICFGDGQNDI  115 (160)
T ss_dssp             TCCSEEEETTTTEEEETTEEEEECCCCSHHHHHHHHHHHHTCCSTT----EEEECCSGGGH
T ss_pred             HCCCCEEECCCEEEEECCEEEEECCCCCHHHHHHHHHHHCCCCCCE----EEEEECCHHHH
T ss_conf             0744234238548861431688334098699999987641436442----99998978779


No 86 
>>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} (A:53-230)
Probab=22.34  E-value=25  Score=10.69  Aligned_cols=58  Identities=14%  Similarity=0.182  Sum_probs=48.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH--------CCHHHHHHHHHHHHCCCCH
Q ss_conf             982899999999999999998457999847899998883--------9989998889997708317
Q gi|254780662|r 1244 LSRPEIAILLAYAKLKLSEQLLDSTLIDDPFFFSILLSY--------FPRQLSELYSEDIMNHQLR 1301 (1576)
Q Consensus      1244 ltrpelavLlay~K~~l~~~l~~s~l~dd~~~~~~l~~y--------fP~~l~~~f~~~i~~H~Lr 1301 (1576)
                      ...++.+-.|||+.+.|..++-.+.+..-.-+.++....        ||..+-+..-+.|..+|++
T Consensus       104 f~s~d~v~~l~~siimLnTdlHn~~~~~kmt~~~Fi~n~~~~~~~~~~~~e~L~~iY~~I~~~~l~  169 (178)
T 1ku1_A          104 QPDADSVFILSYSIIMLNTDLHNPQVKEHMSFEDYSGNLKGCCNHKDFPFWYLDRVYCSIRDKEIV  169 (178)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHTCTTCSSCCCHHHHHHHTTTCBTTBCCCHHHHHHHHHHHHHSCCC
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             267029999999999964312465335777999999998656677889999999999999848577


No 87 
>>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} (A:71-188)
Probab=22.33  E-value=25  Score=10.68  Aligned_cols=16  Identities=19%  Similarity=0.364  Sum_probs=5.6

Q ss_pred             CCHHHHHHHHCCCCCE
Q ss_conf             2888999863036530
Q gi|254780662|r 1051 ATPSEIISAILMASVD 1066 (1576)
Q Consensus      1051 ~~p~eli~~iL~a~vD 1066 (1576)
                      ++++|+++.||+++-|
T Consensus        20 ls~ee~V~kil~CD~d   35 (118)
T 1ux5_A           20 LSVADLVKKILNCDRD   35 (118)
T ss_dssp             SCHHHHHHHHHTTTHH
T ss_pred             CCHHHHHHHHHHCCHH
T ss_conf             9999999999836865


No 88 
>>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium} (A:)
Probab=22.33  E-value=25  Score=10.68  Aligned_cols=24  Identities=13%  Similarity=0.249  Sum_probs=10.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             310114678999999999980899
Q gi|254780662|r  923 KKMGITARGAWETVKRHFREMDID  946 (1576)
Q Consensus       923 K~mGITarGaw~~v~rhfrelg~D  946 (1576)
                      +.|||+.+.+-...++.++.+|++
T Consensus        21 ~~l~iS~~TV~~~~~~i~~Klgv~   44 (61)
T 2jpc_A           21 EKLHISIKTVETHRMNMMRKLQVH   44 (61)
T ss_dssp             HHTCSCHHHHHHHHHHHHHHHTCS
T ss_pred             HHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf             896988999999999999981999


No 89 
>>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* (A:)
Probab=22.23  E-value=15  Score=12.70  Aligned_cols=59  Identities=12%  Similarity=0.210  Sum_probs=43.0

Q ss_pred             CCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             00000025883046899855510307678999997398683533134437324404767999865887707989889988
Q gi|254780662|r 1091 GNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEVNIKIALASAMRDGRLTLENRNK 1170 (1576)
Q Consensus      1091 and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~EVniKIll~~~~~~g~lt~~~Rn~ 1170 (1576)
                      +..+++.     ||+=++-||-+-+|-.||                ++.|..|.-+|. +.-.|.+++.+|-++.++.+.
T Consensus       204 ~~~FL~~-----Ra~Elv~GG~mvl~~~gr----------------~~~~~~~~~~~l-l~~al~dlv~eGlI~eek~ds  261 (384)
T 2efj_A          204 FTTFLRI-----HSEELISRGRMLLTFICK----------------EDEFDHPNSMDL-LEMSINDLVIEGHLEEEKLDS  261 (384)
T ss_dssp             HHHHHHH-----HHHHEEEEEEEEEEEECC----------------CTTTCCCCHHHH-HHHHHHHHHHHTSSCHHHHHT
T ss_pred             HHHHHHH-----HHHHHCCCCEEEEEECCC----------------CCCCCCCCHHHH-HHHHHHHHHHCCCCCHHHHHH
T ss_conf             9999998-----999835786599973355----------------767785528999-999999999839858999950


Q ss_pred             H
Q ss_conf             9
Q gi|254780662|r 1171 L 1171 (1576)
Q Consensus      1171 l 1171 (1576)
                      +
T Consensus       262 F  262 (384)
T 2efj_A          262 F  262 (384)
T ss_dssp             C
T ss_pred             C
T ss_conf             5


No 90 
>>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} (A:96-215,A:367-382)
Probab=22.13  E-value=25  Score=10.65  Aligned_cols=14  Identities=14%  Similarity=0.142  Sum_probs=5.4

Q ss_pred             HHHHHHHHHHCCCC
Q ss_conf             99999998752888
Q gi|254780662|r  675 QLLFSLFRYRFDPS  688 (1576)
Q Consensus       675 ~~l~~~F~~rFdP~  688 (1576)
                      +.+++++...-+|+
T Consensus        30 ~~~~~~L~~~Qn~D   43 (136)
T 1w6k_A           30 EEIVRYLRSVQLPD   43 (136)
T ss_dssp             HHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHCCCC
T ss_conf             99999999710789


No 91 
>>2oo4_A Notch 2, neurogenic locus notch homolog protein 2, HN2, notch2, NOTC2; alpha-beta-sandwich, SEA domain, LNR, LIN12 notch repeat, cysteine-rich; 2.00A {Homo sapiens} (A:49-234)
Probab=21.48  E-value=26  Score=10.55  Aligned_cols=62  Identities=11%  Similarity=0.028  Sum_probs=39.6

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECC
Q ss_conf             79999478774389999999997799127998464899988997374236778876633699999579
Q gi|254780662|r   88 SIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLK  155 (1576)
Q Consensus        88 tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr  155 (1576)
                      +++.++.-+..-+--+-...|...+    .++|.++.+++|..|+..-....  ++...|.++++||.
T Consensus        77 ~L~i~~~~~p~~f~~~~~~fLr~ls----~~Lrt~Vri~~D~~g~~mi~~~~--~e~~gs~v~leiDn  138 (186)
T 2oo4_A           77 TLVIVVLMPPEQLLQDARSFLRALG----TLLHTNLRIKRDSQGELMVYPYY--GEVAGSKVFLEIDN  138 (186)
T ss_dssp             EEEEEESSCHHHHHHTHHHHHHHHH----HHHTSEEEECBCTTSCBCEEEEE--SSSEEEEEEEEEEC
T ss_pred             EEEEEEEECHHHHHHHHHHHHHHHH----HHHCCCEEEEECCCCCEEEECCC--CCCCCEEEEEEECC
T ss_conf             0899995199999876587999988----76365058888788881465578--88565499999637


No 92 
>>2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Haemophilus somnus 129PT} (A:1-172,A:445-487)
Probab=21.36  E-value=26  Score=10.53  Aligned_cols=171  Identities=8%  Similarity=0.035  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCEE---EEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHH
Q ss_conf             789999999999808996548645---99605886332443111276620899973943686777881379899999996
Q gi|254780662|r  930 RGAWETVKRHFREMDIDIQSTPFT---VAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFD 1006 (1576)
Q Consensus       930 rGaw~~v~rhfrelg~D~q~~~fT---vvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~ 1006 (1576)
                      ..+-++++..|+++|.+++..++.   ++-.....++.       ++.+.|.+-.|+.+.. ||.               
T Consensus        31 ~~~a~~l~~~l~~lG~~~e~~~~~~~~~~~~~~~~~~~-------~~~i~l~~h~D~v~~~-~~~---------------   87 (215)
T 2qyv_A           31 EQLAQFIINWAKTKGFFAERDEVGNVLIRKPATVGXEN-------RKPVVLQAHLDXVPQA-NEG---------------   87 (215)
T ss_dssp             HHHHHHHHHHHHHTTCEEEECTTCCEEEEECCCTTCTT-------BCCEEEEEESCBCCC--------------------
T ss_pred             HHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCCC-------CCEEEEEEEECCCCCC-CCC---------------
T ss_conf             99999999999978998999378759999867788899-------9989998422517889-987---------------


Q ss_pred             CCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHH-----HCCCCCEEECCCCCCCEECCCC
Q ss_conf             68987003897871789708982144421798999870988554288899986-----3036530443387421112689
Q gi|254780662|r 1007 SPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISA-----ILMASVDLLWFGGIGTYIRAPR 1081 (1576)
Q Consensus      1007 lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~-----iL~a~vDLlw~gGiGTYvka~~ 1081 (1576)
                       ....|.-=+-++.-.+|.+|.|.+-.-+-            +...--+.+++     +++.++-+++.++        .
T Consensus        88 -~~~~w~~~Pf~~~~~d~~i~GrG~~D~Kg------------~~a~~l~a~~~lk~~~~~~~~I~~~f~~d--------E  146 (215)
T 2qyv_A           88 -TNHNFDQDPILPYIDGDWVKAKGTTLGAD------------NGIGXASALAVLESNDIAHPELEVLLTXT--------E  146 (215)
T ss_dssp             -------CCCCCEEECSSEEEETTBCCCHH------------HHHHHHHHHHHHHCSSSCCSSEEEEEESC--------T
T ss_pred             -CCCCCCCCCCEEEEECCEEECCCCCCCCC------------CHHHHHHHHHHHHHCCCCCCCEEEEEEEE--------C
T ss_conf             -74546679815798577998688537887------------62555445444331145788706999994--------4


Q ss_pred             CCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             8620015210000002588304689985551030767899999739868353313443732440476799986588
Q gi|254780662|r 1082 ENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEVNIKIALASA 1157 (1576)
Q Consensus      1082 e~~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~EVniKIll~~~ 1157 (1576)
                          ++|.+.=..+.-+.....+-+++|++|+-+-.-|         --.-|.-.-.--|+-|+.+-++|++...+
T Consensus       147 ----E~G~~G~~~~~~~~~~~d~~i~~D~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (215)
T 2qyv_A          147 ----ERGXEGAIGLRPNWLRSEILINTDTETIDXVSIG---------PTIRNAHSPDEKVHIPAVETYWKVLTGIL  209 (215)
T ss_dssp             ----TTTCHHHHTCCSSCCCCSEEEECCCCTSEEEECC---------CCEESTTSTTCEEEHHHHHHHHHHHHHHH
T ss_pred             ----CCCCCCCCCCHHHCCCCCEEEEECCCCCCEEEEC---------CCCCCCCCCCCEEEHHHHHHHHHHHHHHH
T ss_conf             ----6778861110111124443688524699889989---------99999988775588999999999999999


No 93 
>>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A (A:)
Probab=21.06  E-value=26  Score=10.49  Aligned_cols=14  Identities=29%  Similarity=0.591  Sum_probs=6.9

Q ss_pred             HHHHHHHHCCCCCC
Q ss_conf             99999998089965
Q gi|254780662|r  935 TVKRHFREMDIDIQ  948 (1576)
Q Consensus       935 ~v~rhfrelg~D~q  948 (1576)
                      +|++..+|+|||+.
T Consensus        10 ~aRklA~e~gidl~   23 (62)
T 1w4i_A           10 AARRLAKELGIDLS   23 (62)
T ss_dssp             HHHHHHHHHTCCGG
T ss_pred             HHHHHHHHCCCCHH
T ss_conf             99999999299888


No 94 
>>1qyn_A Protein-export protein SECB; tetramer, greek KEY beta sheet, chaperone; 2.35A {Escherichia coli} (A:)
Probab=21.02  E-value=26  Score=10.48  Aligned_cols=41  Identities=20%  Similarity=0.163  Sum_probs=27.9

Q ss_pred             EEEEEEEEEEECHHH-----------HCCCHHHCCHHHHHHHHHHHHCCCCC
Q ss_conf             877878852100476-----------26885546208999999999748898
Q gi|254780662|r  309 LIGELHVVGFFTRLV-----------YSQRASKIPLLREKIVKVQNLLNFHP  349 (1576)
Q Consensus       309 viGE~RFlGLFTSsA-----------Y~~sv~~IPiLRrKV~~VL~~sGf~p  349 (1576)
                      .+-|.-..|+|+-.-           .+....=-|++|+=|..+..++||+|
T Consensus        74 F~iev~~~GiF~i~~i~~e~~~~~l~i~~p~iLfPY~R~~Vs~lt~~~gfpp  125 (153)
T 1qyn_A           74 FLCEVQQGGIFSIAGIEGTQMAHCLGAYCPNILFPYARECITSMVSRGTFPQ  125 (153)
T ss_dssp             EEEEEEEEEEEEEESCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             EEEEEEEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             9999999999997377077787778633838887899999999998469998


No 95 
>>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} (A:1-27,A:149-257)
Probab=20.84  E-value=25  Score=10.74  Aligned_cols=66  Identities=12%  Similarity=0.261  Sum_probs=40.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHH
Q ss_conf             31011467899999999998089965486459960588633244311127662089997394368677788137989999
Q gi|254780662|r  923 KKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERK 1002 (1576)
Q Consensus       923 K~mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~ 1002 (1576)
                      +.=|.|+-.|-.     -|+|||      =+++|+|+..-.+..+-       .++-=-++--++++|+|+.-..|.++.
T Consensus        61 ~~GG~tSHaAIi-----AR~lgI------P~Vvg~~~~~~~i~~G~-------~viiDg~~G~V~inP~~~~~~~y~~~~  122 (136)
T 2hwg_A           61 DAGGRTSXTSIX-----ARSLEL------PAIVGTGSVTSQVKNDD-------YLILDAVNNQVYVNPTNEVIDKXRAVQ  122 (136)
T ss_dssp             SSCCTTSHHHHH-----HHHTTC------CEEECCSCHHHHCCTTC-------EEEEETTTTEEEESCCHHHHHHHHHHH
T ss_pred             ECCCCCCCHHHH-----HHHCCC------CEEEECCCCHHHHCCCC-------EEEECCCCEEEEECCCCHHHHHHHHHH
T ss_conf             626654209999-----997288------64874254222305650-------899815401786035401344555568


Q ss_pred             HHHH
Q ss_conf             9996
Q gi|254780662|r 1003 RLFD 1006 (1576)
Q Consensus      1003 RLf~ 1006 (1576)
                      +-+.
T Consensus       123 ~~~~  126 (136)
T 2hwg_A          123 EQVA  126 (136)
T ss_dssp             HHHH
T ss_pred             HHHH
T ss_conf             7767


No 96 
>>1hwx_A GDH, glutamate dehydrogenase; allostery, abortive complex, oxidoreductase; HET: GLU GTP NAI; 2.50A {Bos taurus} (A:208-241,A:373-474)
Probab=20.74  E-value=16  Score=12.43  Aligned_cols=12  Identities=42%  Similarity=0.783  Sum_probs=11.0

Q ss_pred             CCCCCCCCCHHH
Q ss_conf             443732440476
Q gi|254780662|r 1137 NSGGVNCSDLEV 1148 (1576)
Q Consensus      1137 NsaGV~~Sd~EV 1148 (1576)
                      |+|||..|=+|-
T Consensus        36 NAGGVtVSYFEW   47 (136)
T 1hwx_A           36 NAGGVTVSYFQI   47 (136)
T ss_dssp             TTHHHHHHHHHH
T ss_pred             CCCCEEEEHHHH
T ss_conf             075611119999


No 97 
>>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, aromatic amino acid biosynthesis, NADP; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* (A:100-250)
Probab=20.59  E-value=27  Score=10.41  Aligned_cols=39  Identities=10%  Similarity=0.081  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHC
Q ss_conf             999999999808996548645996058863324431112
Q gi|254780662|r  933 WETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGMLL  971 (1576)
Q Consensus       933 w~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgmLl  971 (1576)
                      |....+.+++.+.|++...+-++|.|+|+--|.=.-.-+
T Consensus         2 ~~g~~~~l~~~~~~~~~k~vlviGaG~~g~~va~~L~~~   40 (151)
T 3don_A            2 GIGYVNGLKQIYEGIEDAYILILGAGGASKGIANELYKI   40 (151)
T ss_dssp             HHHHHHHHHHHSTTGGGCCEEEECCSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf             288875554123565553244113444203344566641


No 98 
>>3d7i_A Carboxymuconolactone decarboxylase family protein; 1591455, structural genomics, joint center for structural genomics, JCSG; HET: MSE PG4; 1.75A {Methanocaldococcus jannaschii} (A:38-105)
Probab=20.54  E-value=27  Score=10.40  Aligned_cols=58  Identities=12%  Similarity=0.116  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHH--H-HHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCC
Q ss_conf             7999999999998867352389998--8-8709999999999999999819378999998607
Q gi|254780662|r 1301 RRAIVATVLANEIINKGGSCFVVSL--A-KETGSSTEDVIRSAVIAYAGYELESLWQEVDKLD 1360 (1576)
Q Consensus      1301 rREIIaT~laN~iVNr~G~tF~~rl--~-e~tGa~~~~i~rAy~~a~~if~l~~l~~~I~aLd 1360 (1576)
                      -||+|+-.+  .+.++....+-+.+  . -+.|++..+|..+..++--.-|.+..+..+..++
T Consensus         6 ~r~Li~la~--~~a~~~~~~l~~H~~~A~l~~G~T~eEi~Eai~~~~~~~G~p~~~~a~~~~~   66 (68)
T 3d7i_A            6 TQKLIAIGI--VASRCDEVAIEKQXKSAXKELGITKEEIADVLRVVLLTSGXPAFTKAXKILE   66 (68)
T ss_dssp             HHHHHHHHH--HHTSSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHH--HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             999999999--9995998999999999987179999999999999999860899999999997


No 99 
>>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus HB27} PDB: 3bk1_A* (A:466-562)
Probab=20.47  E-value=27  Score=10.39  Aligned_cols=30  Identities=10%  Similarity=-0.036  Sum_probs=20.7

Q ss_pred             HHHHHHHHCCCEEECCCCCCCCCCCCCCHH
Q ss_conf             789999973986835331344373244047
Q gi|254780662|r 1118 QARVVYSLNGGRINSDAIDNSGGVNCSDLE 1147 (1576)
Q Consensus      1118 ~~Rie~a~~Gg~intDaidNsaGV~~Sd~E 1147 (1576)
                      +-|..+|..|..+.+=++|.++|...++.=
T Consensus         6 ~eR~~La~~Gvv~v~v~id~~~~P~i~srG   35 (97)
T 3bk2_A            6 ADRRHXAEEGLVVITALAGEDPVVEVVSRG   35 (97)
T ss_dssp             HHHHHHHHHCEEEEEEEESSSCEEEEEEES
T ss_pred             HHHHHHHHCCEEEEEEEECCCCCCEEEEEC
T ss_conf             999999729859999998899961698436


No 100
>>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center for structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} (A:1-127)
Probab=20.40  E-value=27  Score=10.38  Aligned_cols=35  Identities=11%  Similarity=0.101  Sum_probs=21.7

Q ss_pred             CCCCE--EEEEECCCCCCCCCCHHHCCCCCEEEEEEC
Q ss_conf             54864--599605886332443111276620899973
Q gi|254780662|r  948 QSTPF--TVAGVGDMSGDVFGNGMLLSRKIQLVAAFD  982 (1576)
Q Consensus       948 q~~~f--TvvgiGdmsGDVfGNgmLls~~i~lvaafd  982 (1576)
                      +.++.  -++|.|.|.....-..+..++.+.++|++|
T Consensus         4 ~~~~irv~iiG~G~~g~~~~~~~~~~~~~~~iv~i~d   40 (127)
T 3kux_A            4 XADKIKVGLLGYGYASKTFHAPLIXGTPGLELAGVSS   40 (127)
T ss_dssp             TTCCEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEEC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf             2114449999796999999999983498849999989


No 101
>>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A (A:1-75,A:195-259)
Probab=20.13  E-value=27  Score=10.34  Aligned_cols=87  Identities=11%  Similarity=0.174  Sum_probs=44.7

Q ss_pred             HHCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCE------EEEEECC-CCCCCCCCHHHCCCC
Q ss_conf             880899850110569999884310114678999999999980899654864------5996058-863324431112766
Q gi|254780662|r  902 QEAKFWLDDAFASGGSMGYDHKKMGITARGAWETVKRHFREMDIDIQSTPF------TVAGVGD-MSGDVFGNGMLLSRK  974 (1576)
Q Consensus       902 ~~~gfwlgdAFaSGgs~GydHK~mGITarGaw~~v~rhfrelg~D~q~~~f------TvvgiGd-msGDVfGNgmLls~~  974 (1576)
                      ++.|+.++  ++|.+|.-.            -+.+..+++.+|++..-+.+      -++.||| +..|+-|---.   .
T Consensus        36 ~~~G~~~~--iiTN~~~~~------------~~~~~~~L~~~Gl~~~f~~ii~~~p~~~~~VGD~~~~Di~~a~~~---G   98 (140)
T 2ho4_A           36 RATSVXVR--FVTNTTKET------------KKDLLERLKKLEFEISEDEIFTSAPEEAVXIGDDCRDDVDGAQNI---G   98 (140)
T ss_dssp             HTSSCEEE--EEECCSSCC------------HHHHHHHHHHTTCCCCGGGEEEHCGGGEEEEESCTTTTHHHHHHT---T
T ss_pred             HHCCCCEE--EEECCCCCC------------HHHHHHHHHHCCCCCCCEEEECHCCCCCEEECCCHHHHHHHHHHC---C
T ss_conf             98699889--994899899------------999999986304677700572176311247437837589999987---9


Q ss_pred             CEEEEEECCCEEEECC---C--CCC-CCCHHHHHHHH
Q ss_conf             2089997394368677---7--881-37989999999
Q gi|254780662|r  975 IQLVAAFDHSDIFIDP---D--PNS-ETTFDERKRLF 1005 (1576)
Q Consensus       975 i~lvaafdh~hif~DP---~--PD~-~~s~~Er~RLf 1005 (1576)
                      .+-+..-.+.+--.++   .  ||- -.|+.|..++.
T Consensus        99 ~~ti~v~~g~~~~~~~~~~~~~pd~~i~~l~el~~~l  135 (140)
T 2ho4_A           99 XLGILVKTGKYKAADEEKINPPPYLTCESFPHAVDHI  135 (140)
T ss_dssp             CEEEEESSTTCCTTGGGGSSSCCSEEESCHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHCCCCCCCEEECCHHHHHHHH
T ss_conf             9299989999996786146899978989999999999


Done!