HHsearch results for GI: 254780662 and protein with PDBid: 2bma_A

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}
Probab=99.85  E-value=1.7e-18  Score=179.43  Aligned_cols=321  Identities=18%  Similarity=0.189  Sum_probs=218.5

Q ss_pred             EEEEEEECCC---CCCCEEEEECCHHHHHHHHHHHHHHHHHCCC--CCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf             5799840542---3304042008857888889998998453287--4288875327871689988998999999999999
Q gi|254780662|r  774 VEGVHLRCGK---IARGGLRWSDRAADYRTEVLGLVRAQKVKNA--VIVPVGAKGGFYPKRLPSEGRRDEIIKIGREAYK  848 (1576)
Q Consensus       774 ~eGvHlR~g~---vARGGlRwSdR~edfrtEvlgL~kaQ~vKN~--vIvp~GaKGgfv~k~~~~~~~r~~~~~e~~~~y~  848 (1576)
                      |.|+...+..   -+.||||+.-..  -..||+.|+..|..||+  .||-||+|||..+.  |..-+..    |..+-.+
T Consensus        97 ~~GyRvqhn~alGP~kGGiRfhp~v--~l~evk~La~~MT~KnAl~gLP~GGgKGGi~~d--Pk~~s~~----E~~r~~r  168 (470)
T 2bma_A           97 NRCFRVQYNSALGPYKGGLRFHPSV--NLSIVKFLGFEQIFKNSLTGLSMGGGKGGSDFD--PKGKSDN----EILKFCQ  168 (470)
T ss_dssp             EEEEEEEEECSSSSEEEEEEECTTC--CHHHHHHHHHHHHHHHHHTCSSCEEEEEEESCC--CTTCCHH----HHHHHHH
T ss_pred             EEEEEEEECCCCCCCCCCEECCCCC--CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC--CCCCCHH----HHHHHHH
T ss_conf             8689999779878876725437989--999999999999999986089977723599528--9999989----9999999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCH-HHHHH-HHHHHHCCCCCCCHHCCCCCC--CCCCCC
Q ss_conf             99989887762568884028831030538986799817788832-68999-999988089985011056999--988431
Q gi|254780662|r  849 TYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTAT-FSDTA-NILAQEAKFWLDDAFASGGSM--GYDHKK  924 (1576)
Q Consensus       849 ~fi~~lLditDN~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~-fsD~A-n~ia~~~gfwlgdAFaSGgs~--GydHK~  924 (1576)
                      .|++.|-..                  -|.|.| |-|+|-||.. -+.|. -..++-.++|-|  .-+|++.  |-..-.
T Consensus       169 ~~~~el~~~------------------iGp~~d-ipA~Dvgt~~~em~~~~~~y~~~~~~~~g--~~TGkp~~~GGs~~r  227 (470)
T 2bma_A          169 AFMNELYRH------------------IGPCTD-VPAGDIGVGGREIGYLYGQYKKIVNSFNG--TLTGKNVKWGGSNLR  227 (470)
T ss_dssp             HHHHHHGGG------------------CBTTTE-EEECCSSCCHHHHHHHHHHHHHHHCCCSC--SSSSCCGGGTCCTTT
T ss_pred             HHHHHHHHC------------------CCCCCC-CCCCCCCCCHHHHHHHHHHHHHCCCCCCC--EECCCCHHHCCCCCC
T ss_conf             999875111------------------587655-06777786699999999988641477653--435887442799998


Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHH--CCCCCEEEEEECCCEEEECCCCCCCCCHHHHH
Q ss_conf             0114678999999999980899654864599605886332443111--27662089997394368677788137989999
Q gi|254780662|r  925 MGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGML--LSRKIQLVAAFDHSDIFIDPDPNSETTFDERK 1002 (1576)
Q Consensus       925 mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgmL--ls~~i~lvaafdh~hif~DP~PD~~~s~~Er~ 1002 (1576)
                      ...|.+|+..+++.-++.+|.+++..  ||+--|  +|.|..+.+.  .-...|+||..|..+..+||+   |.+.++..
T Consensus       228 ~~ATG~Gv~~~~~~~l~~~~~~l~gk--~vaIqG--fGnVG~~aa~~L~e~GakVVavSD~~G~iy~~~---Gld~~~l~  300 (470)
T 2bma_A          228 VEATGYGLVYFVLEVLKSLNIPVEKQ--TAVVSG--SGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPN---GFTHENLE  300 (470)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTCCGGGC--EEEEEC--SSHHHHHHHHHHHHTTCEECEEEETTEEEECSS---CCCHHHHH
T ss_pred             CEEEEEEEHHHHHHHHHHCCCCCCCC--EEEEEC--CCCHHHHHHHHHHHCCCEEEEEECCCCEEECCC---CCCHHHHH
T ss_conf             70689863899999998554685678--899977--773689999999974976999986887388887---78989999


Q ss_pred             HHHHCCCC---CCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCEECC
Q ss_conf             99966898---700389787178970898214442179899987098855428889998630365304433874211126
Q gi|254780662|r 1003 RLFDSPSS---SWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRA 1079 (1576)
Q Consensus      1003 RLf~lprs---sw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYvka 1079 (1576)
                      +|.+..++   ...+|...   ..+.                       ..++++    .++..|+|+|        +||
T Consensus       301 ~l~~~~~~~~~~~~~~~~~---~~~~-----------------------~~~~~~----~~~~~~~DIl--------iPc  342 (470)
T 2bma_A          301 FLIDLKEEKKGRIKEYLNH---SSTA-----------------------KYFPNE----KPWGVPCTLA--------FPC  342 (470)
T ss_dssp             HHHHHHTTTTCCGGGGGGT---CSSC-----------------------EECSSC----CTTSSCCSEE--------EEC
T ss_pred             HHHHHHHHCCCEECCCCCC---CCCC-----------------------EECCCC----CCCCCCCEEE--------ECC
T ss_conf             9999875426532112034---7875-----------------------673886----4467687388--------136


Q ss_pred             CCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             89862001521000000258830468998555103076789999973986835331344373244047679998658877
Q gi|254780662|r 1080 PRENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEVNIKIALASAMR 1159 (1576)
Q Consensus      1080 ~~e~~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~EVniKIll~~~~~ 1159 (1576)
                      ..+... ..+.+. .++.+|    ||+|+||+|..+|+.|.-.|..+|+.+..|.+.|+|||.+|-+|-      .+-..
T Consensus       343 A~~n~I-~~~~a~-~l~~~g----~~ii~EgAN~P~T~eA~~iL~~rGIlv~PD~~ANAGGVivSylE~------~Qn~~  410 (470)
T 2bma_A          343 ATQNDV-DLDQAK-LLQKNG----CILVGEGANMPSTVDAINLFKSNNIIYCPSKAANAGGVAISGLEM------SQNFQ  410 (470)
T ss_dssp             SSTTCB-CSHHHH-HHHHTT----CCEEECCSSSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHHH------HHHHT
T ss_pred             CCCCCC-CHHHHH-HHHHCC----CEEEECCCCCCCCHHHHHHHHHCCCEEECHHHEECCHHHHHHHHH------HHHHH
T ss_conf             565320-277898-998739----789963689999846899999889599771451573033318899------98641


Q ss_pred             CCCCCHHHHHHHHHHHHHHHH
Q ss_conf             079898899889998789999
Q gi|254780662|r 1160 DGRLTLENRNKLLSSMTSEVV 1180 (1576)
Q Consensus      1160 ~g~lt~~~Rn~lL~~mtdeV~ 1180 (1576)
                      .-.-+.++=++-|.++..+.-
T Consensus       411 ~~~w~~eeV~~kL~~im~~i~  431 (470)
T 2bma_A          411 FSHWTRETVDEKLKEIMRNIF  431 (470)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHH
T ss_conf             268899999999999999999