Query gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 1576
No_of_seqs 192 out of 453
Neff 4.7
Searched_HMMs 23785
Date Tue May 31 18:13:41 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780662.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v9l_A Glutamate dehydrogenase 99.9 4.8E-23 2E-27 219.8 19.2 317 773-1174 53-378 (421)
2 3k92_A NAD-GDH, NAD-specific g 99.9 2.3E-21 9.8E-26 204.8 25.6 307 773-1174 64-382 (424)
3 1gtm_A Glutamate dehydrogenase 99.9 4.6E-20 1.9E-24 193.3 25.3 307 774-1173 53-374 (419)
4 3mw9_A GDH 1, glutamate dehydr 99.9 2.6E-19 1.1E-23 186.6 24.9 289 777-1148 81-385 (501)
5 2bma_A Glutamate dehydrogenase 99.9 1.7E-18 7.1E-23 179.4 24.2 321 774-1180 97-431 (470)
6 2tmg_A Protein (glutamate dehy 99.8 1.7E-18 7.3E-23 179.3 23.8 312 774-1178 53-376 (415)
7 1bgv_A Glutamate dehydrogenase 99.8 2E-17 8.3E-22 169.9 18.4 315 778-1175 81-405 (449)
8 1leh_A Leucine dehydrogenase; 99.6 1.1E-14 4.6E-19 145.6 15.4 293 763-1181 12-319 (364)
9 1c1d_A L-phenylalanine dehydro 99.6 1.6E-13 6.6E-18 135.3 19.4 295 763-1178 10-318 (355)
10 1zpv_A ACT domain protein; str 82.4 1.8 7.5E-05 19.5 7.5 68 87-174 5-72 (91)
11 2vt3_A REX, redox-sensing tran 63.2 1.2 4.9E-05 21.1 -0.1 107 641-756 13-125 (215)
12 2nyi_A Unknown protein; protei 62.0 4.8 0.0002 15.7 7.9 56 539-596 93-148 (195)
13 3keo_A Redox-sensing transcrip 61.5 4.6 0.00019 15.8 2.7 39 943-982 79-117 (212)
14 1jil_A Tyrrs, tyrosyl-tRNA syn 52.3 5.8 0.00024 15.0 1.9 16 391-406 31-46 (420)
15 1jqo_A Phosphoenolpyruvate car 50.9 5.2 0.00022 15.4 1.5 42 331-372 54-98 (970)
16 1jrj_A Exendin-4; Trp-CAGE, GL 49.5 6.9 0.00029 14.3 2.0 13 207-219 17-29 (39)
17 2ve8_A FTSK, DNA translocase F 48.8 7.3 0.00031 14.0 3.4 47 1175-1224 11-57 (73)
18 1fiu_A Type II restriction enz 47.6 7.6 0.00032 13.9 1.9 62 886-959 33-99 (286)
19 1mkh_A Metrs;, C-terminal doma 46.8 7.2 0.0003 14.1 1.7 27 962-994 74-100 (107)
20 3n0v_A Formyltetrahydrofolate 45.6 8.1 0.00034 13.7 7.0 67 87-171 8-74 (286)
21 1h6d_A Precursor form of gluco 45.6 5.2 0.00022 15.4 0.8 25 920-945 178-202 (433)
22 1jqn_A Pepcase, PEPC, phosphoe 42.3 6.4 0.00027 14.6 0.9 40 333-372 30-71 (883)
23 1u8s_A Glycine cleavage system 41.3 9.2 0.00039 13.1 9.7 29 540-568 94-122 (192)
24 1t95_A Hypothetical protein AF 37.7 10 0.00043 12.7 4.5 22 1164-1185 94-115 (240)
25 2z01_A Phosphoribosylformylgly 35.7 11 0.00046 12.5 2.8 67 1026-1109 267-333 (348)
26 3moi_A Probable dehydrogenase; 35.6 11 0.00046 12.5 1.7 15 852-866 131-145 (387)
27 2wbm_A MTHSBDS, ribosome matur 34.9 11 0.00047 12.4 4.5 40 1144-1187 91-132 (252)
28 2olv_A Penicillin-binding prot 34.8 11 0.00048 12.4 2.5 59 599-667 37-100 (669)
29 2g49_C Glucagon preproprotein; 33.9 12 0.00049 12.2 1.7 14 205-218 15-28 (29)
30 1fx3_A SECB, protein-export pr 33.8 12 0.00049 12.2 2.3 42 309-350 83-135 (169)
31 1qyn_A Protein-export protein 33.6 12 0.00049 12.2 2.0 42 309-350 74-126 (153)
32 1uwk_A Urocanate hydratase; hy 33.6 12 0.0005 12.2 5.0 85 861-947 429-526 (557)
33 1x6m_A GFA, glutathione-depend 32.8 12 0.00051 12.1 1.7 63 295-364 122-186 (196)
34 3i23_A Oxidoreductase, GFO/IDH 32.7 12 0.00051 12.1 5.8 11 1104-1114 237-247 (349)
35 2jch_A Penicillin-binding prot 31.6 8.1 0.00034 13.7 0.0 16 95-110 60-76 (720)
36 2v9y_A Phosphoribosylformylgly 31.3 13 0.00053 11.9 4.5 67 1026-1109 239-305 (334)
37 1tlt_A Putative oxidoreductase 30.2 13 0.00055 11.8 4.9 21 983-1005 89-109 (319)
38 3nrb_A Formyltetrahydrofolate 28.9 14 0.00058 11.6 8.4 54 85-156 5-58 (287)
39 1ygy_A PGDH, D-3-phosphoglycer 27.9 14 0.0006 11.5 9.9 87 936-1027 387-497 (529)
40 1r8s_E ARNO; protein transport 27.7 14 0.0006 11.5 8.9 59 1243-1301 129-195 (203)
41 3obi_A Formyltetrahydrofolate 26.7 15 0.00062 11.3 7.4 34 87-120 6-39 (288)
42 3jrt_A Integron cassette prote 26.6 13 0.00056 11.8 0.4 10 1140-1149 21-30 (192)
43 1cja_A Protein (actin-fragmin 26.0 15 0.00064 11.2 0.9 24 806-829 66-89 (342)
44 3ikl_A DNA polymerase subunit 25.7 15 0.00065 11.2 1.5 65 917-991 145-214 (459)
45 2oo4_A Notch 2, neurogenic loc 25.3 16 0.00066 11.1 2.5 62 88-155 125-186 (234)
46 3fwm_A Penicillin-binding prot 24.9 16 0.00067 11.1 0.8 59 600-668 162-225 (751)
47 2kzv_A Uncharacterized protein 24.4 15 0.00065 11.2 0.4 20 345-364 41-60 (92)
48 2c8m_A Lipoate-protein ligase 24.0 16 0.00069 10.9 3.1 128 872-1011 35-183 (262)
49 1sc6_A PGDH, D-3-phosphoglycer 23.9 16 0.00069 10.9 6.0 35 537-571 329-363 (404)
50 2c4b_A Barnase mcoeeti fusion; 23.7 9.7 0.00041 12.9 -0.7 30 939-968 28-58 (143)
51 2fkn_A Urocanate hydratase; ro 23.3 17 0.00071 10.8 4.9 85 861-947 425-522 (552)
52 1iaz_A Equinatoxin II; beta-sa 23.0 17 0.00072 10.8 1.5 12 538-549 115-126 (179)
53 2ek8_A Aminopeptidase; metallo 22.9 17 0.00072 10.8 2.2 13 930-942 277-289 (421)
54 2v6z_M DNA polymerase epsilon 22.5 17 0.00073 10.7 1.6 35 334-368 30-64 (99)
55 1w4i_A Pyruvate dehydrogenase 22.5 17 0.00073 10.7 1.0 15 935-949 10-24 (62)
56 3jud_A AIG2-like domain-contai 21.7 18 0.00076 10.6 2.2 27 387-413 87-121 (153)
57 3gfz_A Klebsiella pneumoniae B 21.5 18 0.00076 10.6 5.2 52 708-762 121-172 (413)
58 1pyb_A Methionyl-tRNA syntheta 21.4 18 0.00076 10.5 1.6 29 959-994 76-104 (111)
59 3eto_A Neurogenic locus notch 21.4 18 0.00076 10.5 2.3 63 88-155 129-191 (242)
60 1imo_A DNA ligase III; paralle 21.3 18 0.00077 10.5 0.6 42 973-1017 9-51 (88)
61 1ou9_A Stringent starvation pr 20.8 19 0.00078 10.5 1.6 15 209-223 13-27 (129)
62 2eq8_C Pyruvate dehydrogenase 20.7 19 0.00079 10.4 1.0 20 935-958 5-24 (40)
63 3gaa_A Uncharacterized protein 20.4 19 0.0008 10.4 3.5 124 862-1004 71-206 (252)
64 3cdd_A Prophage MUSO2, 43 kDa 20.2 19 0.0008 10.3 4.3 12 338-349 123-134 (361)
65 2yzr_A Pyridoxal biosynthesis 20.1 13 0.00056 11.7 -0.6 86 558-656 90-175 (330)
No 1
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1
Probab=99.92 E-value=4.8e-23 Score=219.75 Aligned_cols=317 Identities=20% Similarity=0.199 Sum_probs=226.2
Q ss_pred CEEEEEEECCCC---CCCEEEEECCHHHHHHHHHHHHHHHHHCCC--CCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 657998405423---304042008857888889998998453287--428887532787168998899899999999999
Q gi|254780662|r 773 EVEGVHLRCGKI---ARGGLRWSDRAADYRTEVLGLVRAQKVKNA--VIVPVGAKGGFYPKRLPSEGRRDEIIKIGREAY 847 (1576)
Q Consensus 773 ~~eGvHlR~g~v---ARGGlRwSdR~edfrtEvlgL~kaQ~vKN~--vIvp~GaKGgfv~k~~~~~~~r~~~~~e~~~~y 847 (1576)
-|.|++..+..+ |+||+|++. +.=..||+.|+++|..||+ .||-||+|||+.+. |...+.. |..+..
T Consensus 53 ~~~g~rv~H~~~~GP~kGGiR~~~--~~~~~ev~~LA~~MT~K~al~~lp~GG~KggI~~d--p~~~~~~----e~~~~~ 124 (421)
T 1v9l_A 53 VFEGYRVQHCDVLGPYKGGVRFHP--EVTLADDVALAILMTLKNSLAGLPYGGAKGAVRVD--PKKLSQR----ELEELS 124 (421)
T ss_dssp EEEEEEEEEECSSSSEEEEEECCT--TCCHHHHHHHHHHHHHHHHHTTCSCCEEEEEECSC--GGGSCHH----HHHHHH
T ss_pred EEEEEEEEECCCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC--CCCCCHH----HHHHHH
T ss_conf 998999998798788876303578--76899999999898999998389977776589679--8657878----999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCH-HHHH-HHHHHHHCCCCCCCHHCCCCC--CCCCCC
Q ss_conf 999989887762568884028831030538986799817788832-6899-999998808998501105699--998843
Q gi|254780662|r 848 KTYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTAT-FSDT-ANILAQEAKFWLDDAFASGGS--MGYDHK 923 (1576)
Q Consensus 848 ~~fi~~lLditDN~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~-fsD~-An~ia~~~gfwlgdAFaSGgs--~GydHK 923 (1576)
+.|.+.+-++. | +.+-+-|+|-||.. .++| +...+.-+|++.+..| +|++ .|-.+.
T Consensus 125 r~~~~~~~~~~------------------G-~~~dipapDvgt~~~~m~~~~d~~~~~~g~~~~~~~-tgk~~~~gG~~~ 184 (421)
T 1v9l_A 125 RGYARAIAPLI------------------G-DVVDIPAPDVGTNAQIMAWMVDEYSKIKGYNVPGVF-TSKPPELWGNPV 184 (421)
T ss_dssp HHHHHHHGGGC------------------B-TTTEEEECCTTCCHHHHHHHHHHHHHHHTSCCGGGS-CSCCSSSSCCGG
T ss_pred HHHHHHHHHCC------------------C-CCCEECCCCCCCCHHHHHHHHHHEEEEEEEECCCCC-CCCCCCCCCCCC
T ss_conf 99999998607------------------9-984555776887999999986336689864025634-689754578887
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHH
Q ss_conf 10114678999999999980899654864599605886332443111276620899973943686777881379899999
Q gi|254780662|r 924 KMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKR 1003 (1576)
Q Consensus 924 ~mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~R 1003 (1576)
....|.+|+..+++.-+++++.+++...+.+-|.|...+.+. -.|.-...|+|++.|+.+..+||+ +++.++..+
T Consensus 185 r~~atG~gv~~~~~~~~~~~~~~l~g~~vaIQGfGnVG~~~A--~~L~~~GakvvavsD~~G~i~~~~---Gld~~~l~~ 259 (421)
T 1v9l_A 185 REYATGFGVAVATREMAKKLWGGIEGKTVAIQGMGNVGRWTA--YWLEKMGAKVIAVSDINGVAYRKE---GLNVELIQK 259 (421)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHSCCTTCEEEEECCSHHHHHHH--HHHHTTTCEEEEEECSSCEEECTT---CCCTHHHHH
T ss_pred CCEEEEEEEHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHH--HHHHHCCCEEEEEECCCCCEECCC---CCCHHHHHH
T ss_conf 626998705788899997526996788799950784079999--988635868999974787422545---446999999
Q ss_pred HHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCEECCCCCC
Q ss_conf 99668987003897871789708982144421798999870988554288899986303653044338742111268986
Q gi|254780662|r 1004 LFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRAPREN 1083 (1576)
Q Consensus 1004 Lf~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYvka~~e~ 1083 (1576)
+....+++..++-.. ..++ +....|+ .++..++|+|.+|.+|--|
T Consensus 260 ~~~~~g~~~~~~~~~---~~~~----------------------~~~~~~~----~i~~~~~DIliPcA~~~~I------ 304 (421)
T 1v9l_A 260 NKGLTGPALVELFTT---KDNA----------------------EFVKNPD----AIFKLDVDIFVPAAIENVI------ 304 (421)
T ss_dssp TTTSCHHHHHHHHHH---TSCC----------------------CCCSSTT----GGGGCCCSEEEECSCSSCB------
T ss_pred HHHCCHHHHHHHHCC---CCCC----------------------EEEECCH----HHHCCCCCEEEECCCCCEE------
T ss_conf 863330122211102---6883----------------------7960754----7512565577312420044------
Q ss_pred CCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 20015210000002588304689985551030767899999739868353313443732440476799986588770798
Q gi|254780662|r 1084 NADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEVNIKIALASAMRDGRL 1163 (1576)
Q Consensus 1084 ~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~EVniKIll~~~~~~g~l 1163 (1576)
.. .|...++||+|+||||..+|+.|+-.+..+|+.+.+|++.|+|||++|.+|.. .. ...-..
T Consensus 305 ---~~--------~~a~~l~akiIvegAN~p~t~eA~~~L~~rGI~viPD~laNaGGVi~Sy~Ew~-----qn-~~~~~w 367 (421)
T 1v9l_A 305 ---RG--------DNAGLVKARLVVEGANGPTTPEAERILYERGVVVVPDILANAGGVIMSYLEWV-----EN-LQWYIW 367 (421)
T ss_dssp ---CT--------TTTTTCCCSEEECCSSSCBCHHHHHHHHTTTCEEECHHHHSTHHHHHHHHHHH-----HH-HTTCCC
T ss_pred ---CH--------HHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEECHHHHCCCCCEEEHHHHH-----CC-CCCCCC
T ss_conf ---28--------66741235779921799999779999997998997858813864102078776-----40-024689
Q ss_pred CHHHHHHHHHH
Q ss_conf 98899889998
Q gi|254780662|r 1164 TLENRNKLLSS 1174 (1576)
Q Consensus 1164 t~~~Rn~lL~~ 1174 (1576)
+.++=++-|..
T Consensus 368 ~~eev~~~l~~ 378 (421)
T 1v9l_A 368 DEEETRKRLEN 378 (421)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
T ss_conf 99999999999
No 2
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Probab=99.91 E-value=2.3e-21 Score=204.81 Aligned_cols=307 Identities=20% Similarity=0.207 Sum_probs=221.8
Q ss_pred CEEEEEEECCCC---CCCEEEEE-CCHHHHHHHHHHHHHHHHHCCC--CCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 657998405423---30404200-8857888889998998453287--42888753278716899889989999999999
Q gi|254780662|r 773 EVEGVHLRCGKI---ARGGLRWS-DRAADYRTEVLGLVRAQKVKNA--VIVPVGAKGGFYPKRLPSEGRRDEIIKIGREA 846 (1576)
Q Consensus 773 ~~eGvHlR~g~v---ARGGlRwS-dR~edfrtEvlgL~kaQ~vKN~--vIvp~GaKGgfv~k~~~~~~~r~~~~~e~~~~ 846 (1576)
-|.|++...... |.||+|+. .-.+ .||+.|++++..||+ .||-||+|||+.+. |...++.+ -.+-
T Consensus 64 ~~~gyrv~H~~~lGPakGG~R~~p~~~~---~ev~~LA~~MT~K~Ala~lp~GGgKggI~~d--P~~~s~~e----ler~ 134 (424)
T 3k92_A 64 VFTGYRSQHNDAVGPTKGGVRFHPEVNE---EKVKALSIWMTLKCGIANLPYGGGKGGIICD--PRTMSFGE----LERL 134 (424)
T ss_dssp EEEEEEEECCCSSSSEECCEEEETTCCH---HHHHHHHHHHHHHHHHTTCSCEEEEEEEECC--GGGSCHHH----HHHH
T ss_pred EEEEEEEEECCCCCCCCCCEEECCCCCH---HHHHHHHHHHHHHHHHCCCCCCCCCEEEECC--CCCCCHHH----HHHH
T ss_conf 9978999976887888762660598999---9999999987788750799988856688249--87799799----9999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCH-HHHHHH-HHHHHCCCCCCCHHCCCCC--CCCCC
Q ss_conf 9999989887762568884028831030538986799817788832-689999-9998808998501105699--99884
Q gi|254780662|r 847 YKTYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTAT-FSDTAN-ILAQEAKFWLDDAFASGGS--MGYDH 922 (1576)
Q Consensus 847 y~~fi~~lLditDN~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~-fsD~An-~ia~~~gfwlgdAFaSGgs--~GydH 922 (1576)
.+.|++.+-.+ -|.+.| +.|||-||-. .++|.- ..+.-+|++-+ ++.+|++ .|-.+
T Consensus 135 ~r~~~~~l~~~------------------ig~~~d-i~apDvgt~~~~m~~~~d~~~~~~~~~~~-~~vtGkp~~~Ggs~ 194 (424)
T 3k92_A 135 SRGYVRAISQI------------------VGPTKD-IPAPDVYTNSQIMAWMMDEYSRLREFDSP-GFITGKPLVLGGSQ 194 (424)
T ss_dssp HHHHHHHHGGG------------------CBTTTE-ECCBCTTCCHHHHHHHHHHHHHHHTSCCG-GGCSSCCGGGTCCT
T ss_pred HHHHHHHHHHC------------------CCCCCE-ECCCCCCCCHHHHCCHHHHHHHHHCCCCC-CEECCCCCCCCCCC
T ss_conf 99999999753------------------698514-77776665755502025330021023355-41158875468888
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHH--HCCCCCEEEEEECCCEEEECCCCCCCCCHHH
Q ss_conf 31011467899999999998089965486459960588633244311--1276620899973943686777881379899
Q gi|254780662|r 923 KKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGM--LLSRKIQLVAAFDHSDIFIDPDPNSETTFDE 1000 (1576)
Q Consensus 923 K~mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgm--Lls~~i~lvaafdh~hif~DP~PD~~~s~~E 1000 (1576)
...+.|++|+..+++..++..|.+++...|.+-|.| .|.++-. |.-...|+|+.-|+.+-.+||+ +++..+
T Consensus 195 ~~~~aTg~Gv~~~~~~~~~~~~~~l~g~~vaIQG~G----nVG~~~a~~L~~~GakvvavsD~~G~i~~~~---Gldv~~ 267 (424)
T 3k92_A 195 GRETATAQGVTICIEEAVKKKGIKLQNARIIIQGFG----NAGSFLAKFMHDAGAKVIGISDANGGLYNPD---GLDIPY 267 (424)
T ss_dssp TTTTHHHHHHHHHHHHHHHHTTCCGGGCEEEEECCS----HHHHHHHHHHHHHTCEEEEEECSSCEEECTT---CCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC----CHHHHHHHHHHHCCCEEEEEECCCCCEEECC---CCCHHH
T ss_conf 856772067889999988745998688779997157----2689999999876997999986997387046---635689
Q ss_pred HHHHHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCEECCC
Q ss_conf 99999668987003897871789708982144421798999870988554288899986303653044338742111268
Q gi|254780662|r 1001 RKRLFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRAP 1080 (1576)
Q Consensus 1001 r~RLf~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYvka~ 1080 (1576)
+.+..+.- .+-.+|. ...+++++ ++..++|+|.+|.+|--|
T Consensus 268 L~~~~~~~-~~~~~~~-------------------------------~~~v~~~e----i~~~~~DIliPcAl~~~I--- 308 (424)
T 3k92_A 268 LLDKRDSF-GMVTNLF-------------------------------TDVITNEE----LLEKDCDILVPAAISNQI--- 308 (424)
T ss_dssp HHHHCCSS-SCCGGGC-------------------------------SCCBCHHH----HHHSCCSEEEECSCSSCB---
T ss_pred HHHHHHHH-CCCCCCC-------------------------------CEEECCHH----HHCCCCCEEEECCCCCCC---
T ss_conf 99999852-8602445-------------------------------31204366----624777588323433546---
Q ss_pred CCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 98620015210000002588304689985551030767899999739868353313443732440476799986588770
Q gi|254780662|r 1081 RENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEVNIKIALASAMRD 1160 (1576)
Q Consensus 1081 ~e~~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~EVniKIll~~~~~~ 1160 (1576)
..+ |...++||+|+||||-.+|+.+.-.+..+|+.+.+|++.|+|||++|-+|- .-| ...
T Consensus 309 ------~~~--------na~~l~akiIvegAN~p~t~ea~~iL~~rGI~~iPD~laNaGGVivSy~Ew----~qn--~~~ 368 (424)
T 3k92_A 309 ------TAK--------NAHNIQASIVVERANGPTTIDATKILNERGVLLVPDILASAGGVTVSYFEW----VQN--NQG 368 (424)
T ss_dssp ------CTT--------TGGGCCCSEEECCSSSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHHH----HHH--HHT
T ss_pred ------CHH--------HHHHCCCCEEECCCCCCCCHHHHHHHHHCCEEEECHHHHCCCCHHHHHHHH----HHC--CCC
T ss_conf ------788--------897506788992489999862799998399799785886385188889999----730--245
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 79898899889998
Q gi|254780662|r 1161 GRLTLENRNKLLSS 1174 (1576)
Q Consensus 1161 g~lt~~~Rn~lL~~ 1174 (1576)
-..+.++=++-|..
T Consensus 369 ~~w~~e~V~~~l~~ 382 (424)
T 3k92_A 369 YYWSEEEVAEKLRS 382 (424)
T ss_dssp CCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
T ss_conf 78899999999999
No 3
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus dsm 3638} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A
Probab=99.89 E-value=4.6e-20 Score=193.29 Aligned_cols=307 Identities=24% Similarity=0.242 Sum_probs=211.3
Q ss_pred EEEEEEEC---CCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCC--CCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 57998405---423304042008857888889998998453287--4288875327871689988998999999999999
Q gi|254780662|r 774 VEGVHLRC---GKIARGGLRWSDRAADYRTEVLGLVRAQKVKNA--VIVPVGAKGGFYPKRLPSEGRRDEIIKIGREAYK 848 (1576)
Q Consensus 774 ~eGvHlR~---g~vARGGlRwSdR~edfrtEvlgL~kaQ~vKN~--vIvp~GaKGgfv~k~~~~~~~r~~~~~e~~~~y~ 848 (1576)
|.|++..+ .-.|.||+||+. +.=..||+.|++++.+||+ .+|-+|+|||+.+. |...+.. |-..-.+
T Consensus 53 ~~g~rv~Hn~~lGPakGGiR~~~--~v~l~ev~~LA~~MT~K~Al~~lp~GGgKggI~~d--p~~~~~~----e~e~~~r 124 (419)
T 1gtm_A 53 FTGFRVQHNWARGPTKGGIRWHP--EETLSTVKALAAWMTWKTAVMDLPYGGGKGGIIVD--PKKLSDR----EKERLAR 124 (419)
T ss_dssp EEEEEEEEECTTSSEECCEEECT--TCCHHHHHHHHHHHHHHHHHTTCSCEEEEEEEECC--GGGSCHH----HHHHHHH
T ss_pred EEEEEEEECCCCCCCCCCEECCC--CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCC--CCCCCHH----HHHHHHH
T ss_conf 97899996687788877144468--77899999999998999997089988856487569--7668858----8999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCH-HHHHHHH----HHHHCCCCCCCHHCCCCCC--CCC
Q ss_conf 99989887762568884028831030538986799817788832-6899999----9988089985011056999--988
Q gi|254780662|r 849 TYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTAT-FSDTANI----LAQEAKFWLDDAFASGGSM--GYD 921 (1576)
Q Consensus 849 ~fi~~lLditDN~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~-fsD~An~----ia~~~gfwlgdAFaSGgs~--Gyd 921 (1576)
.|++.+.++. |.+. -+-|+|-||.. .+.|... ++.....|+ ++.+|++. |=-
T Consensus 125 ~~~~~l~~~~------------------G~~~-di~apDvgt~~~~m~~~~d~~~~i~~~~~~~~--g~~tgkp~~~GG~ 183 (419)
T 1gtm_A 125 GYIRAIYDVI------------------SPYE-DIPAPDVYTNPQIMAWMMDEYETISRRKTPAF--GIITGKPLSIGGS 183 (419)
T ss_dssp HHHHHHGGGC------------------BTTT-EECCBCTTCCHHHHHHHHHHHHHHHTTSSCGG--GGCSSCCGGGTCC
T ss_pred HHHHHHHHCC------------------CCCC-CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCC
T ss_conf 9999764247------------------8645-66777543567661167656899828557776--6457997536888
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHH-HCC--CCCEEEEEECCCEEEECCCCCCCCCH
Q ss_conf 431011467899999999998089965486459960588633244311-127--66208999739436867778813798
Q gi|254780662|r 922 HKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGM-LLS--RKIQLVAAFDHSDIFIDPDPNSETTF 998 (1576)
Q Consensus 922 HK~mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgm-Lls--~~i~lvaafdh~hif~DP~PD~~~s~ 998 (1576)
+.....|++|+..+++..++.+|.+.- +.-||+.-|- |.|.++-. +|. -..++|+..|+.+..+||+ +++.
T Consensus 184 ~~~~~aTg~Gv~~~~~~a~~~~g~~~l-~g~~VaIQG~--GnVG~~~a~~L~~~~g~~vVavsD~~G~i~n~~---Gld~ 257 (419)
T 1gtm_A 184 LGRIEATARGASYTIREAAKVLGWDTL-KGKTIAIQGY--GNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPD---GLNA 257 (419)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHTTCSCS-TTCEEEEECC--SHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEE---EECH
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCC-CCCEEEEECC--CHHHHHHHHHHHHHCCCCEEEECCCCCEEECCC---CCCH
T ss_conf 886587768999999999998199865-6888996088--679999999998733867999537873698787---6677
Q ss_pred HHHHHHHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCEEC
Q ss_conf 99999996689870038978717897089821444217989998709885542888999863036530443387421112
Q gi|254780662|r 999 DERKRLFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIR 1078 (1576)
Q Consensus 999 ~Er~RLf~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYvk 1078 (1576)
++..++.+.. .+..+|. + ...+++++ ++..++|+|.+|.+|--|
T Consensus 258 ~~L~~~~~~~-g~~~~~~------~------------------------~~~v~~~~----i~~~~~DIliPcAl~~~I- 301 (419)
T 1gtm_A 258 DEVLKWKNEH-GSVKDFP------G------------------------ATNITNEE----LLELEVDVLAPAAIEEVI- 301 (419)
T ss_dssp HHHHHHHHHH-SSSTTCT------T------------------------SEEECHHH----HHHSCCSEEEECSCSCCB-
T ss_pred HHHHHHHHHH-CCCCCCC------C------------------------CEEECCCC----CCCCCCCEEEEECCCCCC-
T ss_conf 9999999972-8620368------7------------------------55643321----246665566010134656-
Q ss_pred CCCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 68986200152100000025883046899855510307678999997398683533134437324404767999865887
Q gi|254780662|r 1079 APRENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEVNIKIALASAM 1158 (1576)
Q Consensus 1079 a~~e~~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~EVniKIll~~~~ 1158 (1576)
..++ ...++||+|+||||..+|+.+.-.+..+|+.+.+|++.|+|||++|.+|-.- -.
T Consensus 302 --------~~~~--------a~~l~akiIvegAN~p~t~ea~~~L~~rGI~~iPD~~aNaGGVi~Sy~Ew~q------n~ 359 (419)
T 1gtm_A 302 --------TKKN--------ADNIKAKIVAEVANGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFEWVQ------NI 359 (419)
T ss_dssp --------CTTG--------GGGCCCSEEECCSSSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHHHHH------HH
T ss_pred --------CHHH--------HHHHCCCEEEECCCCCCCHHHHHHHHHCCEEEECHHHHCCCCHHHHHHHHHH------HH
T ss_conf --------6988--------8521558799027998897899999869989987288638518887999975------23
Q ss_pred HCCCCCHHHHHHHHH
Q ss_conf 707989889988999
Q gi|254780662|r 1159 RDGRLTLENRNKLLS 1173 (1576)
Q Consensus 1159 ~~g~lt~~~Rn~lL~ 1173 (1576)
..-..+.++-++-|.
T Consensus 360 ~~~~~~~e~v~~~l~ 374 (419)
T 1gtm_A 360 TGYYWTIEEVRERLD 374 (419)
T ss_dssp HCCCCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 147889999999999
No 4
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB: 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*
Probab=99.87 E-value=2.6e-19 Score=186.57 Aligned_cols=289 Identities=22% Similarity=0.219 Sum_probs=207.6
Q ss_pred EEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCC--CCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 98405423304042008857888889998998453287--4288875327871689988998999999999999999898
Q gi|254780662|r 777 VHLRCGKIARGGLRWSDRAADYRTEVLGLVRAQKVKNA--VIVPVGAKGGFYPKRLPSEGRRDEIIKIGREAYKTYVRAL 854 (1576)
Q Consensus 777 vHlR~g~vARGGlRwSdR~edfrtEvlgL~kaQ~vKN~--vIvp~GaKGgfv~k~~~~~~~r~~~~~e~~~~y~~fi~~l 854 (1576)
+|=--.--+.||+|++.- .-..||+.|+++|..||+ .||-||+|||+.+. |...+.. |..+.++.|++.|
T Consensus 81 qHn~~~GP~kGGiR~~~~--v~l~ev~~LA~~MT~K~Al~~lP~GGgKggI~~D--P~~~s~~----Eler~~r~f~~~L 152 (501)
T 3mw9_A 81 QHSQHRTPCKGGIRYSTD--VSVDEVKALASLMTYKCAVVDVPFGGAKAGVKIN--PKNYTDN----ELEKITRRFTMEL 152 (501)
T ss_dssp ECCCSSSSEECCEEECTT--CCHHHHHHHHHHHHHHHHHTTCCCEEEEEEECSC--GGGSCHH----HHHHHHHHHHHHH
T ss_pred EECCCCCCCCCCEECCCC--CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC--CCCCCHH----HHHHHHHHHHHHH
T ss_conf 977877788660436888--8899999999898899997289988832699539--9999989----9999999999876
Q ss_pred HHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCH-HHHH-HHHHHHHCCCC--CCCHHCCCCC--CCCCCCCCCCC
Q ss_conf 87762568884028831030538986799817788832-6899-99999880899--8501105699--99884310114
Q gi|254780662|r 855 LSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTAT-FSDT-ANILAQEAKFW--LDDAFASGGS--MGYDHKKMGIT 928 (1576)
Q Consensus 855 LditDN~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~-fsD~-An~ia~~~gfw--lgdAFaSGgs--~GydHK~mGIT 928 (1576)
..- +..+ .|-+ +-|+|-||.. -+.| +-..+.-+|.+ -..++.+|++ .|=-+....-|
T Consensus 153 ~~~--~~~g--------------~d~d-vpapDvgt~~~~m~w~~d~y~~~~g~~~~~~~~~vTGKp~~~GGs~~r~~AT 215 (501)
T 3mw9_A 153 AKK--GFIG--------------PGVD-VPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISAT 215 (501)
T ss_dssp HHT--TSCB--------------TTTE-ECCBCTTCCHHHHHHHHHHHHHTTTTTCTTGGGSCSSCCGGGTCCTTTTTHH
T ss_pred HHC--CCCC--------------CCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
T ss_conf 303--6426--------------7767-5543333007654576653120047666787722468861027889973210
Q ss_pred HHHHHHHHHHHHHH------CCCCCCCCCEEEEEECCCCCCCCCCHH--HCCCCCEEEEEECCCEEEECCCCCCCCCHHH
Q ss_conf 67899999999998------089965486459960588633244311--1276620899973943686777881379899
Q gi|254780662|r 929 ARGAWETVKRHFRE------MDIDIQSTPFTVAGVGDMSGDVFGNGM--LLSRKIQLVAAFDHSDIFIDPDPNSETTFDE 1000 (1576)
Q Consensus 929 arGaw~~v~rhfre------lg~D~q~~~fTvvgiGdmsGDVfGNgm--Lls~~i~lvaafdh~hif~DP~PD~~~s~~E 1000 (1576)
++|++.+++..++. .|++..-..-||+.-| .|.|.++.. |.-...|+|++.|+.+..+||+ +++.++
T Consensus 216 g~Gv~~~~~~~~~~~~~~~~~g~~~~l~g~tvaIQG--fGnVG~~~A~~L~~~GakvVavsD~~G~i~~~~---Gld~~~ 290 (501)
T 3mw9_A 216 GRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQG--FGNVGLHSMRYLHRFGAKCITVGESDGSIWNPD---GIDPKE 290 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHTTCCSSSTTCEEEEEC--CSHHHHHHHHHHHHTTCEEEEEECSSCEEECTT---CCCHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC--CCHHHHHHHHHHHHHCCCCEEEECCCCEEEECC---CCCHHH
T ss_conf 047899999999986665440567444685799968--875799999999970256536753786598365---322689
Q ss_pred HHHHHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCEECCC
Q ss_conf 99999668987003897871789708982144421798999870988554288899986303653044338742111268
Q gi|254780662|r 1001 RKRLFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRAP 1080 (1576)
Q Consensus 1001 r~RLf~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYvka~ 1080 (1576)
..++.+.. .+...|+...++ ++ .+|..++|+|.+|.
T Consensus 291 L~~~~~~~-g~i~~~~~~~~~-------------------------------~~----~il~~~cDIliPcA-------- 326 (501)
T 3mw9_A 291 LEDFKLQH-GTILGFPKAKIY-------------------------------EG----SILEVDCDILIPAA-------- 326 (501)
T ss_dssp HHHHHHHH-SSSTTCTTSEEE-------------------------------CS----CGGGSCCSEEEECS--------
T ss_pred HHHHHHHC-CCCCCCCCEEEE-------------------------------CC----CEECCCCCEEEECC--------
T ss_conf 99999964-960146751330-------------------------------68----71013564551024--------
Q ss_pred CCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHH
Q ss_conf 98620015210000002588304689985551030767899999739868353313443732440476
Q gi|254780662|r 1081 RENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEV 1148 (1576)
Q Consensus 1081 ~e~~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~EV 1148 (1576)
.+.-... -|...++||+|+||||..+|+.|.-.+..+|+.+.+|.+.|+|||++|.+|-
T Consensus 327 l~~~I~~---------~~a~~l~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew 385 (501)
T 3mw9_A 327 SEKQLTK---------SNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEW 385 (501)
T ss_dssp SSCCBCT---------TTGGGCCCSEEECCSSSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHHH
T ss_pred CCCCCCH---------HHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEECHHHHCCCCEEEEHHHH
T ss_conf 4444567---------6786529739993478988978999999789889884786187534559999
No 5
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}
Probab=99.85 E-value=1.7e-18 Score=179.43 Aligned_cols=321 Identities=18% Similarity=0.189 Sum_probs=218.5
Q ss_pred EEEEEEECCC---CCCCEEEEECCHHHHHHHHHHHHHHHHHCCC--CCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 5799840542---3304042008857888889998998453287--4288875327871689988998999999999999
Q gi|254780662|r 774 VEGVHLRCGK---IARGGLRWSDRAADYRTEVLGLVRAQKVKNA--VIVPVGAKGGFYPKRLPSEGRRDEIIKIGREAYK 848 (1576)
Q Consensus 774 ~eGvHlR~g~---vARGGlRwSdR~edfrtEvlgL~kaQ~vKN~--vIvp~GaKGgfv~k~~~~~~~r~~~~~e~~~~y~ 848 (1576)
|.|+...+.. -+.||||+.-.. -..||+.|+..|..||+ .||-||+|||..+. |..-+.. |..+-.+
T Consensus 97 ~~GyRvqhn~alGP~kGGiRfhp~v--~l~evk~La~~MT~KnAl~gLP~GGgKGGi~~d--Pk~~s~~----E~~r~~r 168 (470)
T 2bma_A 97 NRCFRVQYNSALGPYKGGLRFHPSV--NLSIVKFLGFEQIFKNSLTGLSMGGGKGGSDFD--PKGKSDN----EILKFCQ 168 (470)
T ss_dssp EEEEEEEEECSSSSEEEEEEECTTC--CHHHHHHHHHHHHHHHHHTCSSCEEEEEEESCC--CTTCCHH----HHHHHHH
T ss_pred EEEEEEEECCCCCCCCCCEECCCCC--CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC--CCCCCHH----HHHHHHH
T ss_conf 8689999779878876725437989--999999999999999986089977723599528--9999989----9999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCH-HHHHH-HHHHHHCCCCCCCHHCCCCCC--CCCCCC
Q ss_conf 99989887762568884028831030538986799817788832-68999-999988089985011056999--988431
Q gi|254780662|r 849 TYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTAT-FSDTA-NILAQEAKFWLDDAFASGGSM--GYDHKK 924 (1576)
Q Consensus 849 ~fi~~lLditDN~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~-fsD~A-n~ia~~~gfwlgdAFaSGgs~--GydHK~ 924 (1576)
.|++.|-.. -|.|.| |-|+|-||.. -+.|. -..++-.++|-| .-+|++. |-..-.
T Consensus 169 ~~~~el~~~------------------iGp~~d-ipA~Dvgt~~~em~~~~~~y~~~~~~~~g--~~TGkp~~~GGs~~r 227 (470)
T 2bma_A 169 AFMNELYRH------------------IGPCTD-VPAGDIGVGGREIGYLYGQYKKIVNSFNG--TLTGKNVKWGGSNLR 227 (470)
T ss_dssp HHHHHHGGG------------------CBTTTE-EEECCSSCCHHHHHHHHHHHHHHHCCCSC--SSSSCCGGGTCCTTT
T ss_pred HHHHHHHHC------------------CCCCCC-CCCCCCCCCHHHHHHHHHHHHHCCCCCCC--EECCCCHHHCCCCCC
T ss_conf 999875111------------------587655-06777786699999999988641477653--435887442799998
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHH--CCCCCEEEEEECCCEEEECCCCCCCCCHHHHH
Q ss_conf 0114678999999999980899654864599605886332443111--27662089997394368677788137989999
Q gi|254780662|r 925 MGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGML--LSRKIQLVAAFDHSDIFIDPDPNSETTFDERK 1002 (1576)
Q Consensus 925 mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgmL--ls~~i~lvaafdh~hif~DP~PD~~~s~~Er~ 1002 (1576)
...|.+|+..+++.-++.+|.+++.. ||+--| +|.|..+.+. .-...|+||..|..+..+||+ |.+.++..
T Consensus 228 ~~ATG~Gv~~~~~~~l~~~~~~l~gk--~vaIqG--fGnVG~~aa~~L~e~GakVVavSD~~G~iy~~~---Gld~~~l~ 300 (470)
T 2bma_A 228 VEATGYGLVYFVLEVLKSLNIPVEKQ--TAVVSG--SGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPN---GFTHENLE 300 (470)
T ss_dssp TTHHHHHHHHHHHHHHHTTTCCGGGC--EEEEEC--SSHHHHHHHHHHHHTTCEECEEEETTEEEECSS---CCCHHHHH
T ss_pred CEEEEEEEHHHHHHHHHHCCCCCCCC--EEEEEC--CCCHHHHHHHHHHHCCCEEEEEECCCCEEECCC---CCCHHHHH
T ss_conf 70689863899999998554685678--899977--773689999999974976999986887388887---78989999
Q ss_pred HHHHCCCC---CCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCEECC
Q ss_conf 99966898---700389787178970898214442179899987098855428889998630365304433874211126
Q gi|254780662|r 1003 RLFDSPSS---SWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRA 1079 (1576)
Q Consensus 1003 RLf~lprs---sw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYvka 1079 (1576)
+|.+..++ ...+|... ..+. ..++++ .++..|+|+| +||
T Consensus 301 ~l~~~~~~~~~~~~~~~~~---~~~~-----------------------~~~~~~----~~~~~~~DIl--------iPc 342 (470)
T 2bma_A 301 FLIDLKEEKKGRIKEYLNH---SSTA-----------------------KYFPNE----KPWGVPCTLA--------FPC 342 (470)
T ss_dssp HHHHHHTTTTCCGGGGGGT---CSSC-----------------------EECSSC----CTTSSCCSEE--------EEC
T ss_pred HHHHHHHHCCCEECCCCCC---CCCC-----------------------EECCCC----CCCCCCCEEE--------ECC
T ss_conf 9999875426532112034---7875-----------------------673886----4467687388--------136
Q ss_pred CCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 89862001521000000258830468998555103076789999973986835331344373244047679998658877
Q gi|254780662|r 1080 PRENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEVNIKIALASAMR 1159 (1576)
Q Consensus 1080 ~~e~~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~EVniKIll~~~~~ 1159 (1576)
..+... ..+.+. .++.+| ||+|+||+|..+|+.|.-.|..+|+.+..|.+.|+|||.+|-+|- .+-..
T Consensus 343 A~~n~I-~~~~a~-~l~~~g----~~ii~EgAN~P~T~eA~~iL~~rGIlv~PD~~ANAGGVivSylE~------~Qn~~ 410 (470)
T 2bma_A 343 ATQNDV-DLDQAK-LLQKNG----CILVGEGANMPSTVDAINLFKSNNIIYCPSKAANAGGVAISGLEM------SQNFQ 410 (470)
T ss_dssp SSTTCB-CSHHHH-HHHHTT----CCEEECCSSSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHHH------HHHHT
T ss_pred CCCCCC-CHHHHH-HHHHCC----CEEEECCCCCCCCHHHHHHHHHCCCEEECHHHEECCHHHHHHHHH------HHHHH
T ss_conf 565320-277898-998739----789963689999846899999889599771451573033318899------98641
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q ss_conf 079898899889998789999
Q gi|254780662|r 1160 DGRLTLENRNKLLSSMTSEVV 1180 (1576)
Q Consensus 1160 ~g~lt~~~Rn~lL~~mtdeV~ 1180 (1576)
.-.-+.++=++-|.++..+.-
T Consensus 411 ~~~w~~eeV~~kL~~im~~i~ 431 (470)
T 2bma_A 411 FSHWTRETVDEKLKEIMRNIF 431 (470)
T ss_dssp TCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH
T ss_conf 268899999999999999999
No 6
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A
Probab=99.85 E-value=1.7e-18 Score=179.31 Aligned_cols=312 Identities=22% Similarity=0.226 Sum_probs=214.7
Q ss_pred EEEEEEEC---CCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCC--CCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 57998405---423304042008857888889998998453287--4288875327871689988998999999999999
Q gi|254780662|r 774 VEGVHLRC---GKIARGGLRWSDRAADYRTEVLGLVRAQKVKNA--VIVPVGAKGGFYPKRLPSEGRRDEIIKIGREAYK 848 (1576)
Q Consensus 774 ~eGvHlR~---g~vARGGlRwSdR~edfrtEvlgL~kaQ~vKN~--vIvp~GaKGgfv~k~~~~~~~r~~~~~e~~~~y~ 848 (1576)
|.|++..+ .--|.||+|++.-. =..||+.|++++..||+ .++-+|+|||+.+. |...++. |-.+.++
T Consensus 53 ~~g~rv~Hn~~~GPa~GGiR~~~~~--~~~ev~~LA~~MT~K~Ala~lp~GGgKggI~~d--p~~~~~~----el~~~~r 124 (415)
T 2tmg_A 53 FTGYRVQHNVARGPAKGGIRYHPDV--TLDEVKALAFWMTWKTAVMNLPFGGGKGGVRVD--PKKLSRR----ELERLSR 124 (415)
T ss_dssp EEEEEEEEECTTSSEECCEEEESSC--CHHHHHHHHHHHHHHHHHHTCSCCEEEEEEECC--GGGSCHH----HHHHHHH
T ss_pred EEEEEEEECCCCCCCCCCEECCCCC--CHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECC--CCCCCHH----HHHHHHH
T ss_conf 9788999668778876724316888--999999999888999987089989971899779--9889989----9999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCH-HHHHH-HHHHHHCCCCCCCHHCCCCCC--CCCCCC
Q ss_conf 99989887762568884028831030538986799817788832-68999-999988089985011056999--988431
Q gi|254780662|r 849 TYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTAT-FSDTA-NILAQEAKFWLDDAFASGGSM--GYDHKK 924 (1576)
Q Consensus 849 ~fi~~lLditDN~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~-fsD~A-n~ia~~~gfwlgdAFaSGgs~--GydHK~ 924 (1576)
.|++.|-.+ . |.+-| +-|+|-||.. .++|. ...+...|+... ++.+|++. |-....
T Consensus 125 ~~~~~l~~~----~--------------G~~~d-i~a~Dvgt~~~~m~~i~~~~~~~~g~~~~-~~vTGkp~~~GG~~~~ 184 (415)
T 2tmg_A 125 RFFREIQVI----I--------------GPYND-IPAPDVNTNADVIAWYMDEYEMNVGHTVL-GIVTGKPVELGGSKGR 184 (415)
T ss_dssp HHHHHTGGG----C--------------BTTTE-ECCBCTTCCHHHHHHHHHHHHHHHSSCCC-CSCSSCCGGGTCCTTT
T ss_pred HHHHHHHCC----C--------------CCCCC-EECCCCCCCHHHHHHHHCCCCCCCCCCCC-CEECCCCCCCCCCCCC
T ss_conf 999987403----6--------------88874-41464676899987762244322476334-4462787402899998
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHH-HCC--CCCEEEEEECCCEEEECCCCCCCCCHHHH
Q ss_conf 011467899999999998089965486459960588633244311-127--66208999739436867778813798999
Q gi|254780662|r 925 MGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGM-LLS--RKIQLVAAFDHSDIFIDPDPNSETTFDER 1001 (1576)
Q Consensus 925 mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgm-Lls--~~i~lvaafdh~hif~DP~PD~~~s~~Er 1001 (1576)
-.-|.+|+-.+++..++.+|.+++...+.+-|. |.|.++-. +|. .-.++|+..|+.+-.++|+ +.+..+.
T Consensus 185 ~~atg~gv~~~a~~~~~~~~~~l~g~~vaIQG~----GnVG~~~a~~L~~~~Ga~vVavsD~~G~i~~~~---Gld~~~l 257 (415)
T 2tmg_A 185 EEATGRGVKVCAGLAMDVLGIDPKKATVAVQGF----GNVGQFAALLISQELGSKVVAVSDSRGGIYNPE---GFDVEEL 257 (415)
T ss_dssp TTHHHHHHHHHHHHHHHHTTCCTTTCEEEEECC----SHHHHHHHHHHHHTTCCEEEEEECSSCEEECTT---CCCHHHH
T ss_pred CCEEEEEEHHHHHHHHHHCCCCCCCCEEEEECC----CCHHHHHHHHHHHHCCCEEEEEECCCCCEECCC---CCCHHHH
T ss_conf 523898879999999986799857887999857----738899998777756985999706777067777---7988999
Q ss_pred HHHHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCEECCCC
Q ss_conf 99996689870038978717897089821444217989998709885542888999863036530443387421112689
Q gi|254780662|r 1002 KRLFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRAPR 1081 (1576)
Q Consensus 1002 ~RLf~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYvka~~ 1081 (1576)
.+..+..++. ..| . ....+++++ ++..++|+|.+|..|-=|
T Consensus 258 ~~~~~~~~~~-~~~------~------------------------~~~~~~~~~----i~~~~~DIl~PcAl~~~I---- 298 (415)
T 2tmg_A 258 IRYKKEHGTV-VTY------P------------------------KGERITNEE----LLELDVDILVPAALEGAI---- 298 (415)
T ss_dssp HHHHHHSSCS-TTC------S------------------------SSEEECHHH----HTTCSCSEEEECSSTTSB----
T ss_pred HHHHHHCCCC-CCC------C------------------------CCEECCCHH----HHCCCCCEEEECCCCCCC----
T ss_conf 9999860875-456------5------------------------753147445----304765578444666845----
Q ss_pred CCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 86200152100000025883046899855510307678999997398683533134437324404767999865887707
Q gi|254780662|r 1082 ENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEVNIKIALASAMRDG 1161 (1576)
Q Consensus 1082 e~~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~EVniKIll~~~~~~g 1161 (1576)
.. -|...++||+|+||||-.+|+.+.-.+..+|+.+..|++.|+|||++|.+|.. +-...-
T Consensus 299 -----n~--------~~a~~l~akiI~egAN~p~t~ea~~~L~~rGI~viPD~~aNaGGVi~sy~E~~------qn~~~~ 359 (415)
T 2tmg_A 299 -----HA--------GNAERIKAKAVVEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWV------QDLQSF 359 (415)
T ss_dssp -----CH--------HHHTTCCCSEEECCSSSCBCHHHHHHHHHTTCEEECHHHHTCHHHHHHHHHHH------HHHTTC
T ss_pred -----CH--------HHHHHHHHCEEEECCCCCCCHHHHHHHHHCCEEEECHHHHCCCCEEEEHHHHH------CCCCCC
T ss_conf -----78--------88856521738833789889779999984990996869967876344588875------532346
Q ss_pred CCCHHHHHHHHHHHHHH
Q ss_conf 98988998899987899
Q gi|254780662|r 1162 RLTLENRNKLLSSMTSE 1178 (1576)
Q Consensus 1162 ~lt~~~Rn~lL~~mtde 1178 (1576)
..+.++-++-|.++..+
T Consensus 360 ~w~~~~v~~~l~~~m~~ 376 (415)
T 2tmg_A 360 FWDLDQVRNALEKMMKG 376 (415)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 88999999999999999
No 7
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A
Probab=99.79 E-value=2e-17 Score=169.92 Aligned_cols=315 Identities=18% Similarity=0.139 Sum_probs=206.7
Q ss_pred EEECCCCCCCEEEEE-CCHHHHHHHHHHHHHHHHHCCC--CCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 840542330404200-8857888889998998453287--4288875327871689988998999999999999999898
Q gi|254780662|r 778 HLRCGKIARGGLRWS-DRAADYRTEVLGLVRAQKVKNA--VIVPVGAKGGFYPKRLPSEGRRDEIIKIGREAYKTYVRAL 854 (1576)
Q Consensus 778 HlR~g~vARGGlRwS-dR~edfrtEvlgL~kaQ~vKN~--vIvp~GaKGgfv~k~~~~~~~r~~~~~e~~~~y~~fi~~l 854 (1576)
|=--.--+-||+|++ .-.. .||+.|++.+..||+ .||=||+|||+.+. |...+..+. .+-.+.|++.+
T Consensus 81 Hn~~lGP~kGGiR~~p~v~~---~ev~~LA~~MT~K~Al~glp~GGgKggI~~d--P~~~s~~el----~r~~r~~~~~l 151 (449)
T 1bgv_A 81 FNGAIGPYKGGLRFAPSVNL---SIMKFLGFEQAFKDSLTTLPMGGAKGGSDFD--PNGKSDREV----MRFCQAFMTEL 151 (449)
T ss_dssp EECSSSSEEEEEEECTTCCH---HHHHHHHHHHHHHHHHTSSSCCEEEEEESCC--CTTCCHHHH----HHHHHHHHHHH
T ss_pred ECCCCCCCCCCEECCCCCCH---HHHHHHHHHHHHHHHHCCCCCCCCCEEECCC--CCCCCHHHH----HHHHHHHHHHH
T ss_conf 65887887673551599999---9999999999999997179977744488169--988999999----99999999864
Q ss_pred HHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCH-HHHHHH-HHHHHCCCCCCCHHCCCCC--CCCCCCCCCCCHH
Q ss_conf 87762568884028831030538986799817788832-689999-9998808998501105699--9988431011467
Q gi|254780662|r 855 LSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTAT-FSDTAN-ILAQEAKFWLDDAFASGGS--MGYDHKKMGITAR 930 (1576)
Q Consensus 855 LditDN~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~-fsD~An-~ia~~~gfwlgdAFaSGgs--~GydHK~mGITar 930 (1576)
-..+ |.|-+ +-|+|-||-. -+.|.- ..++-.|++.. +..+|++ .|=.+.....|.+
T Consensus 152 ~~~i------------------G~d~d-ipa~D~gt~~~~m~~i~d~y~~~~g~~~~-~~~TGkp~~~GG~~~r~~ATG~ 211 (449)
T 1bgv_A 152 YRHI------------------GPDID-VPAGDLGVGAREIGYMYGQYRKIVGGFYN-GVLTGKARSFGGSLVRPEATGY 211 (449)
T ss_dssp GGGC------------------BTTTE-EEECBTTBCHHHHHHHHHHHHHHHTSCCG-GGSSSCCGGGTCCTTTTTHHHH
T ss_pred CHHC------------------CCCCC-CCHHHCCHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCCCCCCCCHHHHHH
T ss_conf 3212------------------78689-78577280698899998522113456566-7666775324898885233336
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHH--HCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHCC
Q ss_conf 899999999998089965486459960588633244311--127662089997394368677788137989999999668
Q gi|254780662|r 931 GAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGM--LLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSP 1008 (1576)
Q Consensus 931 Gaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgm--Lls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~lp 1008 (1576)
|+..+++.-++.+|.+++...+.+-|.| .|..+.. |.-...|+|+.-|+.+..+||+ +.+.++..+.+...
T Consensus 212 Gv~~~~~~~~~~~~~~l~g~~vaIQGfG----nVG~~~A~~L~e~GakvvavsD~~G~iy~~~---Gld~~~l~~~~~~~ 284 (449)
T 1bgv_A 212 GSVYYVEAVMKHENDTLVGKTVALAGFG----NVAWGAAKKLAELGAKAVTLSGPDGYIYDPE---GITTEEKINYMLEM 284 (449)
T ss_dssp HHHHHHHHHHHHTTCCSTTCEEEECCSS----HHHHHHHHHHHHHTCEEEEEEETTEEEECTT---CSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEECCC----HHHHHHHHHHHHCCCCEEEEECCCCEEEECC---CCCHHHHHHHHHHH
T ss_conf 7899999999854998689889997668----2899999999866992599855883599417---87768899999986
Q ss_pred CCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCEECCCCCCCCCCC
Q ss_conf 98700389787178970898214442179899987098855428889998630365304433874211126898620015
Q gi|254780662|r 1009 SSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRAPRENNADIG 1088 (1576)
Q Consensus 1009 rssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYvka~~e~~~~vg 1088 (1576)
++...+.-.+....-|.. .++++ .++..|+|+|.+|. .+.. ...
T Consensus 285 ~~~~~~~~~~~~~~~g~~-----------------------~~~~~----~~~~~~~DIliPcA--------~~~~-I~~ 328 (449)
T 1bgv_A 285 RASGRNKVQDYADKFGVQ-----------------------FFPGE----KPWGQKVDIIMPCA--------TQND-VDL 328 (449)
T ss_dssp HHHCCCCTHHHHHHHTCE-----------------------EEETC----CGGGSCCSEEECCS--------CTTC-BCH
T ss_pred HCCCCCCHHHHHHCCCCE-----------------------ECCCC----CCCCCCCEEEEECC--------CCCC-CCH
T ss_conf 121677324434205844-----------------------42433----34568861998468--------7776-578
Q ss_pred CCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHH-HHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 2100000025883046899855510307678999-997398683533134437324404767999865887707989889
Q gi|254780662|r 1089 DKGNNILRVTADKVRAKVIGEGANLGLTQQARVV-YSLNGGRINSDAIDNSGGVNCSDLEVNIKIALASAMRDGRLTLEN 1167 (1576)
Q Consensus 1089 d~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie-~a~~Gg~intDaidNsaGV~~Sd~EVniKIll~~~~~~g~lt~~~ 1167 (1576)
++++. +.+ ..||+|+||||.-+|+.|.-. +..+|+.+..|.+.|+|||++|-+|- .+-...-..+.++
T Consensus 329 ~na~~---l~A--~~~kiIvEgAN~p~t~eA~~~ll~~~gI~vvPD~laNAGGVivSy~Ew------~qn~~~~~w~~ee 397 (449)
T 1bgv_A 329 EQAKK---IVA--NNVKYYIEVANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEM------SQNSERLSWTAEE 397 (449)
T ss_dssp HHHHH---HHH--TTCCEEECCSSSCBCHHHHHHHHHCTTCEEECHHHHTTHHHHHHHHHH------HHHHHTSCCCHHH
T ss_pred HHHHH---HHH--CCCEEEEECCCCCCCHHHHHHHHHCCCEEEECHHHHCCCCHHHHHHHH------HHHHHCCCCCHHH
T ss_conf 88857---765--596499714789877267899997199899746985386499989999------8614027999999
Q ss_pred HHHHHHHH
Q ss_conf 98899987
Q gi|254780662|r 1168 RNKLLSSM 1175 (1576)
Q Consensus 1168 Rn~lL~~m 1175 (1576)
=++-|+..
T Consensus 398 V~~~L~~~ 405 (449)
T 1bgv_A 398 VDSKLHQV 405 (449)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
No 8
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1
Probab=99.64 E-value=1.1e-14 Score=145.62 Aligned_cols=293 Identities=21% Similarity=0.202 Sum_probs=185.1
Q ss_pred CCEEEEEECCC-----EEEEEEECCCCCCCEEEE--ECCHHHHHHHHHHHHHHHHHCCC--CCCCCCCCEEEEECCCCCC
Q ss_conf 85699998386-----579984054233040420--08857888889998998453287--4288875327871689988
Q gi|254780662|r 763 LHREIFVYGVE-----VEGVHLRCGKIARGGLRW--SDRAADYRTEVLGLVRAQKVKNA--VIVPVGAKGGFYPKRLPSE 833 (1576)
Q Consensus 763 P~~eifv~sp~-----~eGvHlR~g~vARGGlRw--SdR~edfrtEvlgL~kaQ~vKN~--vIvp~GaKGgfv~k~~~~~ 833 (1576)
|-..++++.++ +-.+|=--.--|.||+|+ ..-.++.-.|++.|+.....||+ .|+=+|+|||+.+. |..
T Consensus 12 ~e~v~~~~d~~tgl~~~iaihn~~~GPa~GGiR~~~y~~~~~~l~ev~~LA~~MT~K~al~~lp~GGgKggI~~d--p~~ 89 (364)
T 1leh_A 12 YEQLVFCQDEASGLKAVIAIHDTTLGPALGGARMWTYNAEEEAIEDALRLARGMTYKNAAAGLNLGGGKTVIIGD--PFA 89 (364)
T ss_dssp CCEEEEEEETTTTEEEEEEEEECSSSSEECCEEEECCSCHHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEEEESC--TTT
T ss_pred CEEEEEEECCCCCCEEEEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC--CCC
T ss_conf 708999966877978999994799888663086258897677799999999999999986069988748999479--987
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCH-HHHHHHHHHHHCCCCCCCHH
Q ss_conf 99899999999999999989887762568884028831030538986799817788832-68999999988089985011
Q gi|254780662|r 834 GRRDEIIKIGREAYKTYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTAT-FSDTANILAQEAKFWLDDAF 912 (1576)
Q Consensus 834 ~~r~~~~~e~~~~y~~fi~~lLditDN~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~-fsD~An~ia~~~gfwlgdAF 912 (1576)
.+++ |..+.|..|++.|.+ .| +-|+|-||.. .++| +..++++..|.--
T Consensus 90 ~~~~----el~r~~~~~~~~l~g-----------------------~~-i~apDvgt~~~~m~~---i~~~~~~~~g~~~ 138 (364)
T 1leh_A 90 DKNE----DMFRALGRFIQGLNG-----------------------RY-ITAEDVGTTVDDMDL---IHQETDYVTGISP 138 (364)
T ss_dssp TCCH----HHHHHHHHHHHTTTT-----------------------SE-EBCBCTTCCHHHHHH---HHTTCSCBCSCCH
T ss_pred CCHH----HHHHHHHHHHHHCCC-----------------------CC-CCCCCCCCCHHHHHH---HHHHCEEECCCCC
T ss_conf 7899----999999999997078-----------------------73-037847858999999---8531314234013
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-C-CCCCCCCEEEEEECCCCCCCCCCHH--HCCCCCEEEEEECCCEEEE
Q ss_conf 0569999884310114678999999999980-8-9965486459960588633244311--1276620899973943686
Q gi|254780662|r 913 ASGGSMGYDHKKMGITARGAWETVKRHFREM-D-IDIQSTPFTVAGVGDMSGDVFGNGM--LLSRKIQLVAAFDHSDIFI 988 (1576)
Q Consensus 913 aSGgs~GydHK~mGITarGaw~~v~rhfrel-g-~D~q~~~fTvvgiGdmsGDVfGNgm--Lls~~i~lvaafdh~hif~ 988 (1576)
..||| .+....|+.|++.+++.-.++. | .+++ .-||+.-| .|.|.+.-. |.-.-.|+++.
T Consensus 139 ~~gg~----~~~~~aTg~Gv~~~~~~~~~~~~~~~~l~--g~~vaIQG--fGnVG~~~a~~L~~~Gakvv~~-------- 202 (364)
T 1leh_A 139 AFGSS----GNPSPVTAYGVYRGMKAAAKEAFGSDSLE--GLAVSVQG--LGNVAKALCKKLNTEGAKLVVT-------- 202 (364)
T ss_dssp HHHHH----CCHHHHHHHHHHHHHHHHHHHHHSSCCCT--TCEEEEEC--CSHHHHHHHHHHHHTTCEEEEE--------
T ss_pred CCCCC----CCCCEEEEEEEEHHHHHHHHHHHCCCCCC--CCEEEEEC--CCHHHHHHHHHHHHCCCEEEEE--------
T ss_conf 23787----78663688964031899999971788867--88899985--6716899999999779999995--------
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEE
Q ss_conf 77788137989999999668987003897871789708982144421798999870988554288899986303653044
Q gi|254780662|r 989 DPDPNSETTFDERKRLFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLL 1068 (1576)
Q Consensus 989 DP~PD~~~s~~Er~RLf~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLl 1068 (1576)
|.++ .........+ | ...++++ .++..++|+|
T Consensus 203 d~~~------~~~~~~~~~~--------------g------------------------~~~~~~~----~i~~~~~DIl 234 (364)
T 1leh_A 203 DVNK------AAVSAAVAEE--------------G------------------------ADAVAPN----AIYGVTCDIF 234 (364)
T ss_dssp CSCH------HHHHHHHHHH--------------C------------------------CEECCGG----GTTTCCCSEE
T ss_pred CCCH------HHHHHHEECC--------------C------------------------CEECCCC----CCCCCCCCEE
T ss_conf 4887------8853101136--------------9------------------------7875874----4135676388
Q ss_pred CCCCCCCEECCCCCCCCCCCCCCCCCEECCCCCEEEEEEEECC-CCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHH
Q ss_conf 3387421112689862001521000000258830468998555-103076789999973986835331344373244047
Q gi|254780662|r 1069 WFGGIGTYIRAPRENNADIGDKGNNILRVTADKVRAKVIGEGA-NLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLE 1147 (1576)
Q Consensus 1069 w~gGiGTYvka~~e~~~~vgd~and~~rv~g~~lr~kvi~EG~-NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~E 1147 (1576)
.+|.+|.-| ..++ ...++||+|+||| |-..|+.+.-.+..+|+.+.+|++.|+|||.+|.+|
T Consensus 235 iPcA~~~~I---------~~~n--------a~~i~ak~Ive~ANN~~~~~ea~~~L~~rGI~viPD~laNaGGVi~~~~E 297 (364)
T 1leh_A 235 APCALGAVL---------NDFT--------IPQLKAKVIAGSADNQLKDPRHGKYLHELGIVYAPDYVINAGGVINVADE 297 (364)
T ss_dssp EECSCSCCB---------STTH--------HHHCCCSEECCSCSCCBSSHHHHHHHHHHTCEECCHHHHTTHHHHHHHHG
T ss_pred EECCCCCCC---------CHHH--------HHHCCCCEEEECCCCCCCCHHHHHHHHHCCCEEECCHHCCCCCEEEEEEE
T ss_conf 324631337---------8878--------96457879996587898884589999878919965123148724788642
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 6799986588770798988998899987899999
Q gi|254780662|r 1148 VNIKIALASAMRDGRLTLENRNKLLSSMTSEVVE 1181 (1576)
Q Consensus 1148 VniKIll~~~~~~g~lt~~~Rn~lL~~mtdeV~~ 1181 (1576)
. + ..+.++-++.+..|.+.+.+
T Consensus 298 ~-----~-------~~~~~~~~~~~~~I~~~~~~ 319 (364)
T 1leh_A 298 L-----Y-------GYNRTRAMKRVDGIYDSIEK 319 (364)
T ss_dssp G-----G-------CCCHHHHHHHHTHHHHHHHH
T ss_pred H-----H-------CCCHHHHHHHHHHHHHHHHH
T ss_conf 3-----2-------19999999999999999999
No 9
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Probab=99.62 E-value=1.6e-13 Score=135.34 Aligned_cols=295 Identities=17% Similarity=0.133 Sum_probs=182.2
Q ss_pred CCEEEEEECCC-----EEEEEEECCCCCCCEEEE--ECCHHHHHHHHHHHHHHHHHCCCC--CCCCCCCEEEEECCCCCC
Q ss_conf 85699998386-----579984054233040420--088578888899989984532874--288875327871689988
Q gi|254780662|r 763 LHREIFVYGVE-----VEGVHLRCGKIARGGLRW--SDRAADYRTEVLGLVRAQKVKNAV--IVPVGAKGGFYPKRLPSE 833 (1576)
Q Consensus 763 P~~eifv~sp~-----~eGvHlR~g~vARGGlRw--SdR~edfrtEvlgL~kaQ~vKN~v--Ivp~GaKGgfv~k~~~~~ 833 (1576)
|-..+++|.|. +-.+|=--.--|.||+|+ +...++...|++.|++....||++ +|=+|+|||+.+......
T Consensus 10 ~e~~v~~~d~~tg~~~~iaihst~lGPakGGiR~~~~~~~~~~l~ev~~LA~~MT~K~Al~~lp~GGgKggI~~~p~~~~ 89 (355)
T 1c1d_A 10 GEMTVTRFDAMTGAHFVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALPAPRHS 89 (355)
T ss_dssp SSEEEEEEETTTTEEEEEEEEECSSSSEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEEEECSSCGGG
T ss_pred CCEEEEEECCCCCCEEEEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCC
T ss_conf 84799986677785589999169988877706636889989999999999999999999818998871548832874355
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCH-HHHHHHHHHHHCCCCCCCHH
Q ss_conf 99899999999999999989887762568884028831030538986799817788832-68999999988089985011
Q gi|254780662|r 834 GRRDEIIKIGREAYKTYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTAT-FSDTANILAQEAKFWLDDAF 912 (1576)
Q Consensus 834 ~~r~~~~~e~~~~y~~fi~~lLditDN~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~-fsD~An~ia~~~gfwlgdAF 912 (1576)
.+... +++ ..+.|.+.+-.+ . | +| +.|||-||.. -++|. ..+|++..|..-
T Consensus 90 ~~~~e-~e~---l~R~~~~~l~~l----~--------------G--~~-i~apDvgt~~~~m~~i---~d~~~~vtgkp~ 141 (355)
T 1c1d_A 90 IDPST-WAR---ILRIHAENIDKL----S--------------G--NY-WTGPDVNTNSADMDTL---NDTTEFVFGRSL 141 (355)
T ss_dssp CCHHH-HHH---HHHHHHHHHHHT----T--------------T--SE-EEEECTTCCHHHHHHH---HHHCSCBCCCCG
T ss_pred CCHHH-HHH---HHHHHHHHHHHH----C--------------C--CC-CCCCCCCCCHHHHHHH---HHHCCEEEECCC
T ss_conf 78789-999---999999998875----1--------------7--66-3345679888999998---533143230252
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCCCCCEEEEEECCCCCCCCCCH--HHCCCCCEEEEEECCCEEEEC
Q ss_conf 056999988431011467899999999998089-96548645996058863324431--112766208999739436867
Q gi|254780662|r 913 ASGGSMGYDHKKMGITARGAWETVKRHFREMDI-DIQSTPFTVAGVGDMSGDVFGNG--MLLSRKIQLVAAFDHSDIFID 989 (1576)
Q Consensus 913 aSGgs~GydHK~mGITarGaw~~v~rhfrelg~-D~q~~~fTvvgiGdmsGDVfGNg--mLls~~i~lvaafdh~hif~D 989 (1576)
..|||.|- -..|++|++.+++.-++..|. +...-.+-+-|.| -|.+.- .|.....|++++ |
T Consensus 142 ~~gg~~~~----~~aTg~Gv~~~~~~~~~~~g~~~l~g~~VaIQGfG----nVG~~~a~~L~~~Ga~vv~~--------d 205 (355)
T 1c1d_A 142 ERGGAGSS----AFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLG----AVGGSLASLAAEAGAQLLVA--------D 205 (355)
T ss_dssp GGTSCCCC----HHHHHHHHHHHHHHHHHHTTCCCSTTCEEEEECCS----HHHHHHHHHHHHTTCEEEEE--------C
T ss_pred CCCCCCCC----CCCEEEEEEEEHHHHHHHCCCCCCCCCEEEEECCC----HHHHHHHHHHHHHCCEEEEC--------C
T ss_conf 35898887----76135778872278998728998668779998134----36789998899729898741--------5
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEEC
Q ss_conf 77881379899999996689870038978717897089821444217989998709885542888999863036530443
Q gi|254780662|r 990 PDPNSETTFDERKRLFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLW 1069 (1576)
Q Consensus 990 P~PD~~~s~~Er~RLf~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw 1069 (1576)
.+ . .-..+.-. +....+++++ +|..|+|+|.
T Consensus 206 ~d--~----~~i~~~~~---------------------------------------~~~~~i~~~~----~~~~~~DIli 236 (355)
T 1c1d_A 206 TD--T----ERVAHAVA---------------------------------------LGHTAVALED----VLSTPCDVFA 236 (355)
T ss_dssp SC--H----HHHHHHHH---------------------------------------TTCEECCGGG----GGGCCCSEEE
T ss_pred CC--H----HHHHHHHH---------------------------------------CCCCCCCHHH----CCCCCCEEEE
T ss_conf 77--8----87535675---------------------------------------2983025545----0632631897
Q ss_pred CCCCCCEECCCCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHH-HHHHHHHCCCEEECCCCCCCCCCCCCCHHH
Q ss_conf 3874211126898620015210000002588304689985551030767-899999739868353313443732440476
Q gi|254780662|r 1070 FGGIGTYIRAPRENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQ-ARVVYSLNGGRINSDAIDNSGGVNCSDLEV 1148 (1576)
Q Consensus 1070 ~gGiGTYvka~~e~~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~-~Rie~a~~Gg~intDaidNsaGV~~Sd~EV 1148 (1576)
+|- .+.-. ..+ |...++||+|+||||--+|+. +--.+..+|+.+.+|++.|+|||+++..|-
T Consensus 237 PcA--------~~~~I-~~~--------~a~~i~akiI~e~AN~p~t~~~a~~iL~~rgI~viPD~laNAGGVi~~~~~~ 299 (355)
T 1c1d_A 237 PCA--------MGGVI-TTE--------VARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGGAIHLVGRE 299 (355)
T ss_dssp ECS--------CSCCB-CHH--------HHHHCCCSEECCSCTTCBCSHHHHHHHHHTTCEECCHHHHTTHHHHHHHHHH
T ss_pred ECC--------CCCCC-CHH--------HHHHCCCEEEEECCCCCCCCHHHHHHHHHCCEEEECCCEEECCCHHHHHHHH
T ss_conf 655--------44765-888--------8954796199526889999978999999799199881105576136677677
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 799986588770798988998899987899
Q gi|254780662|r 1149 NIKIALASAMRDGRLTLENRNKLLSSMTSE 1178 (1576)
Q Consensus 1149 niKIll~~~~~~g~lt~~~Rn~lL~~mtde 1178 (1576)
....+.++-++.+..|.+-
T Consensus 300 -----------~~~w~~~~v~~~~~~i~~~ 318 (355)
T 1c1d_A 300 -----------VLGWSESVVHERAVAIGDT 318 (355)
T ss_dssp -----------TTCCCHHHHHHHHHTHHHH
T ss_pred -----------HHCCCHHHHHHHHHHHHHH
T ss_conf -----------6168999999999999999
No 10
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Streptococcus pneumoniae TIGR4} SCOP: d.58.18.7
Probab=82.44 E-value=1.8 Score=19.50 Aligned_cols=68 Identities=12% Similarity=0.105 Sum_probs=44.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCCCHHHHHHHHH
Q ss_conf 57999947877438999999999779912799846489998899737423677887663369999957999899999999
Q gi|254780662|r 87 ISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKITPEEAIEIKK 166 (1576)
Q Consensus 87 ~tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~~~e~~~~L~~ 166 (1576)
..||.++++|+|=+|..|+..|..+|.+|.-+-.-+. ++.-...+.+.++.. ....+|++
T Consensus 5 k~vitv~g~DrpGIva~vt~~L~~~g~NI~d~~q~~~------------------~~~F~~~~~v~~~~~--~~~~~l~~ 64 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVL------------------DEYFTMMAVVSSDEK--QDFTYLRN 64 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEE------------------TTEEEEEEEEEESSC--CCHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEE------------------CCCEEEEEEEECCCC--CCHHHHHH
T ss_conf 8999999089787899999999987994998450895------------------371289999964999--99999999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780662|r 167 QLIFIIEQ 174 (1576)
Q Consensus 167 ~L~~VL~d 174 (1576)
+|..+-++
T Consensus 65 ~l~~la~~ 72 (91)
T 1zpv_A 65 EFEAFGQT 72 (91)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999998
No 11
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, transcription regulation, redox poise, DNA-binding, NAD, NADH; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=63.20 E-value=1.2 Score=21.11 Aligned_cols=107 Identities=22% Similarity=0.255 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHH---CC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999881---88-889899999997147999999999987528887752048899999999999863036832
Q gi|254780662|r 641 ISVLRSYARYLRQA---SV-TWSQNFIARVLSKNPTISQLLFSLFRYRFDPSLSDQERGENTKRILGEIDSALLKVPSLD 716 (1576)
Q Consensus 641 v~~lra~~~yl~Q~---~~-~~s~~~i~~~l~~~p~~~~~l~~~F~~rFdP~~~~~~r~~~~~~~~~~~~~~l~~V~~ld 716 (1576)
+.=|-.|-|||.++ |. .-|...+.+.+.-.|...|.=+.+|-.-=.|. ..-....+.+.|.+.|. ++
T Consensus 13 i~RLp~Y~r~L~~l~~~g~~~iSS~~La~~~gi~~~qvRkDls~fG~~G~~g-----~GY~V~~L~~~i~~iLG----~~ 83 (215)
T 2vt3_A 13 AKRLPLYYRFLKNLHASGKQRVSSAELSDAVKVDSATIRRDFSYFGALGKKG-----YGYNVDYLLSFFRKTLD----QD 83 (215)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEECHHHHHHHHCCCHHHHHHHHHHTTCCC----------EEHHHHHHHHHHHHH----HC
T ss_pred HHHHHHHHHHHHHHHHCCCCEECHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-----CCEEHHHHHHHHHHHHC----CC
T ss_conf 9999999999999998699489799999996989999999999974249988-----87168999999999968----99
Q ss_pred HHH--HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHCC
Q ss_conf 779--9999999999752228730589886368863957778
Q gi|254780662|r 717 DDT--VLRSYVNLISGTLRTNYFQKNQDDIALVFKFDSRKIN 756 (1576)
Q Consensus 717 ~dr--ilr~~~~~i~atlRTN~y~~~~~~~~lsfkld~~~i~ 756 (1576)
... ++=..=++=.|.++-+.|.....+..-.|--||.++.
T Consensus 84 ~~~~viIvGaGnLG~AL~~y~~f~~~gf~Iva~FD~Dp~kiG 125 (215)
T 2vt3_A 84 EMTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIG 125 (215)
T ss_dssp ---CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTT
T ss_pred CCCEEEEECCCHHHHHHHHCCCCCCCCCEEEEEECCCHHHCC
T ss_conf 984389989778999998172544589689999748856639
No 12
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=61.95 E-value=4.8 Score=15.68 Aligned_cols=56 Identities=5% Similarity=-0.009 Sum_probs=31.5
Q ss_pred EEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCEEEEECCCCCCEEEEEEEEEECCC
Q ss_conf 0799997479876698988889856957972154466765888731799998143067
Q gi|254780662|r 539 KVQIKIFHARGPFSLSKRVPLLENLGFTVISEDTFEIKMLADDEEHLVVLYQMDLSPA 596 (1576)
Q Consensus 539 ~~~lk~~~~~~~~~Ls~~~p~l~~~G~~v~~e~~y~i~~~~~~~~~~~~i~~f~l~~~ 596 (1576)
.+.+.++....|-.|.++--+|...|+.+.+-+..... .+ ..+...+-..+.+..+
T Consensus 93 ~~vv~v~~~DrpGLL~~it~~La~~~inI~~~~~~~~~-~~-~~~~~~F~~~~~i~~p 148 (195)
T 2nyi_A 93 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLP-AP-FAGFTLFRMGSRVAFP 148 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEE-CS-STTCEEEEEEEEEEEE
T ss_pred EEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEEC-CC-CCCCCCEEEEEEEECC
T ss_conf 89999950688789999999997669519980212661-67-6788528999999679
No 13
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=61.51 E-value=4.6 Score=15.83 Aligned_cols=39 Identities=21% Similarity=0.366 Sum_probs=16.5
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCCHHHCCCCCEEEEEEC
Q ss_conf 0899654864599605886332443111276620899973
Q gi|254780662|r 943 MDIDIQSTPFTVAGVGDMSGDVFGNGMLLSRKIQLVAAFD 982 (1576)
Q Consensus 943 lg~D~q~~~fTvvgiGdmsGDVfGNgmLls~~i~lvaafd 982 (1576)
||.| +..+.-.||.|.+.--+..+.-......+++|+||
T Consensus 79 LG~~-~~~~v~lVGaGnLG~AL~~y~~f~~~gf~Iva~FD 117 (212)
T 3keo_A 79 LNDH-STTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFD 117 (212)
T ss_dssp TTTT-SCEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEE
T ss_pred HCCC-CCCEEEEECCCHHHHHHHHCCCCCCCCCEEEEEEE
T ss_conf 6899-98428998888899998828461017978999995
No 14
>1jil_A Tyrrs, tyrosyl-tRNA synthetase, tyrosyl-transfer; truncation, structure based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=52.28 E-value=5.8 Score=14.96 Aligned_cols=16 Identities=13% Similarity=0.044 Sum_probs=9.7
Q ss_pred CCEEEEEEECCCCCEE
Q ss_conf 8517999746668989
Q gi|254780662|r 391 PRVRVLPRIDRFNHFF 406 (1576)
Q Consensus 391 ~rvRLFlR~D~fgRFv 406 (1576)
.++++.+=-||-+..+
T Consensus 31 ~~~~~y~G~DPTa~sL 46 (420)
T 1jil_A 31 EQVTLYCGADPTADSL 46 (420)
T ss_dssp SCCEEEEEECCSSSSC
T ss_pred CCCEEEEEECCCCCCC
T ss_conf 9957999267898762
No 15
>1jqo_A Phosphoenolpyruvate carboxylase; beta barrel, carbon dioxide fixation, lyase; 3.00A {Zea mays} SCOP: c.1.12.3
Probab=50.94 E-value=5.2 Score=15.39 Aligned_cols=42 Identities=14% Similarity=0.067 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHCC---CCCCCCCHHHHHHHHHCCCHHHHHCC
Q ss_conf 6208999999999748---89888787999998722894886058
Q gi|254780662|r 331 IPLLREKIVKVQNLLN---FHPNSHSSRMLQNTLEFYPRDELFQI 372 (1576)
Q Consensus 331 IPiLRrKV~~VL~~sG---f~p~SHsgK~L~~ILEtyPRDELFQ~ 372 (1576)
=|-+-.+|+.|-+.|- -..+.-+.++|..+|.+++-+|+.++
T Consensus 54 G~~~~e~VE~iR~ls~~~~~~~d~~~~~~L~~~l~~L~~~~~~~v 98 (970)
T 1jqo_A 54 GPSLREFVQECYEVSADYEGKGDTTKLGELGAKLTGLAPADAILV 98 (970)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHHSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 789999999999999999734888999999999967998999999
No 16
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=49.49 E-value=6.9 Score=14.27 Aligned_cols=13 Identities=23% Similarity=0.652 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 8899999999728
Q gi|254780662|r 207 VEALTFLNWLNED 219 (1576)
Q Consensus 207 ~Ea~aFL~WL~dd 219 (1576)
.-+.+|++||.++
T Consensus 17 ~aakdFv~WL~ng 29 (39)
T 1jrj_A 17 EAVRLFIEWLKNG 29 (39)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999999828
No 17
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=48.84 E-value=7.3 Score=14.04 Aligned_cols=47 Identities=19% Similarity=0.160 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 78999999985007899999999750065179999999999984898824
Q gi|254780662|r 1175 MTSEVVELVLRNNYLQSLAISLESRKGMAMMWNFAQLMKFLGKEGALDRE 1224 (1576)
Q Consensus 1175 mtdeV~~lVL~~n~~Q~~~ls~~~~~~~~~~~~~~rli~~Le~~g~Ldr~ 1224 (1576)
|-+++.++|...+.. .+|+.+++=.--.+..+|+|+.||+.|.....
T Consensus 11 l~~~a~~~V~~~~ka---S~S~lQR~l~IGYnRAariid~LE~~GiVsp~ 57 (73)
T 2ve8_A 11 LYDEAVRFVTESRRA---SISAVQRKLKIGYNRAARMIEAMEMAGVVTPM 57 (73)
T ss_dssp THHHHHHHHHHHCCC---CHHHHHHHHTCCHHHHHHHHHHHHHTTSBCCC
T ss_pred HHHHHHHHHHHHCCC---CHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC
T ss_conf 999999999980874---58999999730507999999999987886887
No 18
>1fiu_A Type II restriction enzyme ngomi; protein-DNA complex, double helix, restriction endonuclease, restriction-modifiction systems, hydrolase; HET: DNA; 1.60A {Neisseria gonorrhoeae} SCOP: c.52.1.10
Probab=47.56 E-value=7.6 Score=13.92 Aligned_cols=62 Identities=23% Similarity=0.237 Sum_probs=39.8
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHH-----HHHHHHHHCCCCCCCCCEEEEEECC
Q ss_conf 7788832689999999880899850110569999884310114678999-----9999999808996548645996058
Q gi|254780662|r 886 ADKGTATFSDTANILAQEAKFWLDDAFASGGSMGYDHKKMGITARGAWE-----TVKRHFREMDIDIQSTPFTVAGVGD 959 (1576)
Q Consensus 886 aDkgTa~fsD~An~ia~~~gfwlgdAFaSGgs~GydHK~mGITarGaw~-----~v~rhfrelg~D~q~~~fTvvgiGd 959 (1576)
||+.--+=.-+|++||..-+ +.++.-|.-|-|+-+-.| ++++.|-++.+. .--+..|..+|.
T Consensus 33 AD~sn~~S~~iA~~Ia~~L~-----------a~tv~~r~aGQt~G~~FE~~~~~Fi~~tf~~l~hl-RPG~W~v~~~g~ 99 (286)
T 1fiu_A 33 ADGSNTRSFNIAKGIADLLH-----------SETVSERLPGQTSGNAFEAICSEFVQSAFEKLQHI-RPGDWNVKQVGS 99 (286)
T ss_dssp SCTTCHHHHHHHHHHHHHTT-----------CCCBCCCCCHHHHHHHHHHHHHHHHHHHHGGGTTT-SCSCEEEEECCT
T ss_pred CCCCCCHHHHHHHHHHHHHC-----------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-CCCCCEEEECCC
T ss_conf 76665011999999999855-----------57656555666334479999999999987875267-888606885477
No 19
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4
Probab=46.77 E-value=7.2 Score=14.12 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=19.6
Q ss_pred CCCCCCHHHCCCCCEEEEEECCCEEEECCCCCC
Q ss_conf 332443111276620899973943686777881
Q gi|254780662|r 962 GDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNS 994 (1576)
Q Consensus 962 GDVfGNgmLls~~i~lvaafdh~hif~DP~PD~ 994 (1576)
..|-++||+||. ..+..-.++.|+++.
T Consensus 74 ~Gv~SeGMl~s~------~e~~~~~ll~~~~~~ 100 (107)
T 1mkh_A 74 RGIGSQGMLLAA------DDGERVALLMPDKEV 100 (107)
T ss_dssp -CCEECCCBCEE------ECSSCEEECCCSSCC
T ss_pred CCCCCCEEEEEE------ECCCCEEEEECCCCC
T ss_conf 981478899853------569917998689998
No 20
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=45.64 E-value=8.1 Score=13.66 Aligned_cols=67 Identities=10% Similarity=-0.042 Sum_probs=43.2
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCCCHHHHHHHHH
Q ss_conf 57999947877438999999999779912799846489998899737423677887663369999957999899999999
Q gi|254780662|r 87 ISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKITPEEAIEIKK 166 (1576)
Q Consensus 87 ~tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~~~e~~~~L~~ 166 (1576)
+-|+.+.++|.|=||..|+..|.++|..|....+=+ .+ ...-=+|.++++...+-...+|++
T Consensus 8 ~~IL~i~CpD~~GiVa~vt~~l~~~g~NI~~~~qf~---D~---------------~~~~FFmR~~f~~~~~~~~~~l~~ 69 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFD---DR---------------QSGRFFIRVEFRQPDDFDEAGFRA 69 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE---ET---------------TTTEEEEEEEEECCSSCCHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCC---CC---------------CCCEEEEEEEEECCCCCCHHHHHH
T ss_conf 089999899998659999999997899874661122---68---------------888489999997699989999998
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780662|r 167 QLIFI 171 (1576)
Q Consensus 167 ~L~~V 171 (1576)
++..+
T Consensus 70 ~f~~~ 74 (286)
T 3n0v_A 70 GLAER 74 (286)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 89987
No 21
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=45.56 E-value=5.2 Score=15.39 Aligned_cols=25 Identities=8% Similarity=0.093 Sum_probs=16.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 88431011467899999999998089
Q gi|254780662|r 920 YDHKKMGITARGAWETVKRHFREMDI 945 (1576)
Q Consensus 920 ydHK~mGITarGaw~~v~rhfrelg~ 945 (1576)
|=-|-|+.|...+++-++.. ++-|+
T Consensus 178 ~~EKP~a~~~~e~~~l~~~a-~~~~~ 202 (433)
T 1h6d_A 178 MCEKPMATSVADCQRMIDAA-KAANK 202 (433)
T ss_dssp EECSSCCSSHHHHHHHHHHH-HHHTC
T ss_pred EEECCCCCCCCCCCHHHHHH-HHHCC
T ss_conf 99578412333232024667-65240
No 22
>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+ and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia coli} SCOP: c.1.12.3 PDB: 1fiy_A* 1qb4_A
Probab=42.27 E-value=6.4 Score=14.60 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHCCCHHHHHCC
Q ss_conf 0899999999974889888--787999998722894886058
Q gi|254780662|r 333 LLREKIVKVQNLLNFHPNS--HSSRMLQNTLEFYPRDELFQI 372 (1576)
Q Consensus 333 iLRrKV~~VL~~sGf~p~S--HsgK~L~~ILEtyPRDELFQ~ 372 (1576)
-+-.+|+.|-+.+.-...+ =+.+.|...|..++-++++.+
T Consensus 30 ~~~~~vE~iR~ls~~~r~~~~~~~~~L~~~l~~L~~~~~~~v 71 (883)
T 1jqn_A 30 HILERVETIRKLSKSSRAGNDANRQELLTTLQNLSNDELLPV 71 (883)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 999999999999998753780659999999977998999999
No 23
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=41.30 E-value=9.2 Score=13.15 Aligned_cols=29 Identities=7% Similarity=-0.058 Sum_probs=13.5
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCEEE
Q ss_conf 79999747987669898888985695797
Q gi|254780662|r 540 VQIKIFHARGPFSLSKRVPLLENLGFTVI 568 (1576)
Q Consensus 540 ~~lk~~~~~~~~~Ls~~~p~l~~~G~~v~ 568 (1576)
+.+.+.....|=.|.++-.+|.+.|+.+.
T Consensus 94 ~~v~v~g~DrpGlL~~It~~la~~~inI~ 122 (192)
T 1u8s_A 94 VEVYVESDDKLGLTEKFTQFFAQRQIGMA 122 (192)
T ss_dssp EEEEEEESCCTTHHHHHHHHHHHTTCCEE
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCCC
T ss_conf 99999951762689999999986799700
No 24
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C
Probab=37.73 E-value=10 Score=12.72 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=9.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9889988999878999999985
Q gi|254780662|r 1164 TLENRNKLLSSMTSEVVELVLR 1185 (1576)
Q Consensus 1164 t~~~Rn~lL~~mtdeV~~lVL~ 1185 (1576)
|.+||.+.++++..+|..++-+
T Consensus 94 t~~eR~~~~e~k~k~Ii~~I~~ 115 (240)
T 1t95_A 94 TAEQRREMLEAKRKQIINFISR 115 (240)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5899999999999999999999
No 25
>2z01_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha and beta proteins, cytoplasm, purine biosynthesis, structural genomics, NPPSFA; 2.20A {Geobacillus kaustophilus}
Probab=35.69 E-value=11 Score=12.47 Aligned_cols=67 Identities=19% Similarity=0.140 Sum_probs=34.8
Q ss_pred EEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCEECCCCCEEEE
Q ss_conf 89821444217989998709885542888999863036530443387421112689862001521000000258830468
Q gi|254780662|r 1026 IISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRAPRENNADIGDKGNNILRVTADKVRAK 1105 (1576)
Q Consensus 1026 v~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYvka~~e~~~~vgd~and~~rv~g~~lr~k 1105 (1576)
-..-...++|++|.++... +..-+++.|+.+ .||+|||--+=.+.+ + .++..+.++-.|. .|.
T Consensus 267 ~~~Id~~~~p~p~if~~i~--~~g~i~~~Em~~---------tfN~GiGmvl~v~~~-~---~~~i~~~l~~~g~--~a~ 329 (348)
T 2z01_A 267 GARIQLGSWPILPIFDFLR--EKGSLEEEEMFS---------VFNMGIGLVLAVSPE-T---AAPLVEWLSERGE--PAY 329 (348)
T ss_dssp EEEEETTSSCCCHHHHHHH--HHTTCCHHHHHH---------HSCTTEEEEEEECHH-H---HHHHHHHHHHTTC--CCE
T ss_pred EEEEECCCCCCCHHHHHHH--HHCCCCHHHHHH---------HCCCCCEEEEEECHH-H---HHHHHHHHHHCCC--CEE
T ss_conf 6999615688868999999--848989899998---------607851299998589-9---9999999986799--809
Q ss_pred EEEE
Q ss_conf 9985
Q gi|254780662|r 1106 VIGE 1109 (1576)
Q Consensus 1106 vi~E 1109 (1576)
+|||
T Consensus 330 iIG~ 333 (348)
T 2z01_A 330 IIGE 333 (348)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9999
No 26
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=35.62 E-value=11 Score=12.47 Aligned_cols=15 Identities=20% Similarity=0.184 Sum_probs=6.5
Q ss_pred HHHHHHHHCCCCCCC
Q ss_conf 898877625688840
Q gi|254780662|r 852 RALLSITDNFEGQEI 866 (1576)
Q Consensus 852 ~~lLditDN~~~g~v 866 (1576)
+.+..+.++..-|++
T Consensus 131 ~~~k~~i~~g~iG~i 145 (387)
T 3moi_A 131 RTLRAIVQEGSVGRV 145 (387)
T ss_dssp HHHHHHHHHCTTCCE
T ss_pred HHHHHHHHCCCCCCE
T ss_conf 999998734886614
No 27
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein, ribosome binding; 1.75A {Methanothermobacterthermautotrophicus}
Probab=34.92 E-value=11 Score=12.38 Aligned_cols=40 Identities=20% Similarity=0.363 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 40476799986588770798--988998899987899999998500
Q gi|254780662|r 1144 SDLEVNIKIALASAMRDGRL--TLENRNKLLSSMTSEVVELVLRNN 1187 (1576)
Q Consensus 1144 Sd~EVniKIll~~~~~~g~l--t~~~Rn~lL~~mtdeV~~lVL~~n 1187 (1576)
+|.+--||+.| ..|++ |.+||...++++..++..++-+++
T Consensus 91 ~d~~eI~~~IL----~kGeiQlt~~eR~~~~e~k~~~Ii~~I~~~~ 132 (252)
T 2wbm_A 91 ADPLEVTPVIL----RRGTIQLTAEQRRQMIEDKRLKIINKIAREA 132 (252)
T ss_dssp CCHHHHHHHHH----HHSEEECCHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred CCHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999----7285242578999999999999999999856
No 28
>2olv_A Penicillin-binding protein 2; transpeptidase fold, glycosyltransferase family 51, lysozyme fold; HET: M0E; 2.80A {Staphylococcus aureus} SCOP: d.2.1.10 e.3.1.1 PDB: 2olu_A* 3dwk_A*
Probab=34.76 E-value=11 Score=12.36 Aligned_cols=59 Identities=12% Similarity=0.197 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH-----HHHHCCCCCHHHHHHHH
Q ss_conf 6689788899999999999769875643569999639989999999999999-----98818888989999999
Q gi|254780662|r 599 ARFDLVDRRDALVEAFKYIFHERVDNDSFNHLIMLTDLRVYEISVLRSYARY-----LRQASVTWSQNFIARVL 667 (1576)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~e~D~~n~Lv~~~~l~~r~v~~lra~~~y-----l~Q~~~~~s~~~i~~~l 667 (1576)
..+.++++-..+.+||.++ |+-.|-. ..|++|+- ++||...- ..|-|.+.+|.++-..+
T Consensus 37 ~~v~~~~ip~~~~~A~ia~-----ED~~Fy~---H~GvD~~g--i~RA~~~nl~~g~~~qGgSTITqQlvkn~~ 100 (669)
T 2olv_A 37 EHVNLKDVPKSMKDAVLAT-----EDNRFYE---HGALDYKR--LFGAIGKNLTGGFGSEGASTLTQQVVKDAF 100 (669)
T ss_dssp CCCCSTTSCHHHHHHHHHH-----HCTTCSS---CSSSCSHH--HHHHHTC---------CCCCHHHHHHHTTT
T ss_pred EECCHHHCCHHHHHHHHHH-----HCCCCCC---CCCCCHHH--HHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
T ss_conf 3648698799999767678-----6286545---88869999--999999998559978860359999876433
No 29
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=33.85 E-value=12 Score=12.25 Aligned_cols=14 Identities=29% Similarity=0.570 Sum_probs=10.2
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 14889999999972
Q gi|254780662|r 205 YAVEALTFLNWLNE 218 (1576)
Q Consensus 205 e~~Ea~aFL~WL~d 218 (1576)
+...|.+|.+||.+
T Consensus 15 d~r~aqdFv~WLmn 28 (29)
T 2g49_C 15 DSRRAQDFVQWLMN 28 (29)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99898999999862
No 30
>1fx3_A SECB, protein-export protein SECB; protein trasnport, translocation, transport protein; 2.50A {Haemophilus influenzae} SCOP: d.33.1.1 PDB: 1ozb_A
Probab=33.76 E-value=12 Score=12.24 Aligned_cols=42 Identities=24% Similarity=0.222 Sum_probs=30.9
Q ss_pred EEEEEEEEEEECHHHH-----------CCCHHHCCHHHHHHHHHHHHCCCCCC
Q ss_conf 8778788521004762-----------68855462089999999997488988
Q gi|254780662|r 309 LIGELHVVGFFTRLVY-----------SQRASKIPLLREKIVKVQNLLNFHPN 350 (1576)
Q Consensus 309 viGE~RFlGLFTSsAY-----------~~sv~~IPiLRrKV~~VL~~sGf~p~ 350 (1576)
.+-|.-..|+|+-.-. ..+..=-|++|+-+..+..++||+|=
T Consensus 83 F~~E~~yagif~i~~~~~e~~~~~l~i~~P~~lFPy~R~iis~l~~~gGFppl 135 (169)
T 1fx3_A 83 FICEVKQAGVFTISGLEDVQMAHCLTSQCPNMLFPYARELVSNLVNRGTFPAL 135 (169)
T ss_dssp CEEEEEEEEEEEEESCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred EEEEEEEEEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99998799999960386666413441257288878999999999984699974
No 31
>1qyn_A Protein-export protein SECB; tetramer, greek KEY beta sheet, chaperone; 2.35A {Escherichia coli} SCOP: d.33.1.1
Probab=33.65 E-value=12 Score=12.22 Aligned_cols=42 Identities=19% Similarity=0.135 Sum_probs=28.2
Q ss_pred EEEEEEEEEEECHHH-----------HCCCHHHCCHHHHHHHHHHHHCCCCCC
Q ss_conf 877878852100476-----------268855462089999999997488988
Q gi|254780662|r 309 LIGELHVVGFFTRLV-----------YSQRASKIPLLREKIVKVQNLLNFHPN 350 (1576)
Q Consensus 309 viGE~RFlGLFTSsA-----------Y~~sv~~IPiLRrKV~~VL~~sGf~p~ 350 (1576)
.+-|.-..|+|+-.- -..+..=-|.+|+-+..+..++||+|=
T Consensus 74 f~vEl~yagif~i~~~~~e~~~~illi~~P~~lfPy~R~ii~~l~~~~GFppl 126 (153)
T 1qyn_A 74 FLCEVQQGGIFSIAGIEGTQMAHCLGAYCPNILFPYARECITSMVSRGTFPQL 126 (153)
T ss_dssp EEEEEEEEEEEEEESCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred EEEEEEEEEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999988999993062767657677338388878999999999984699985
No 32
>1uwk_A Urocanate hydratase; hydrolase, urocanase, imidazolonepropionate, histidine metabolism, lyase; HET: NAD URO; 1.19A {Pseudomonas putida} SCOP: e.51.1.1 PDB: 1w1u_A* 1uwl_A* 2v7g_A*
Probab=33.56 E-value=12 Score=12.21 Aligned_cols=85 Identities=25% Similarity=0.225 Sum_probs=48.9
Q ss_pred CCCCCCCCCCCCEECCCCCCEEEEECCCCCCH-------HHHHH--HHHH-HHCCCCCCCHHCCCCCCCC---CCCCCCC
Q ss_conf 68884028831030538986799817788832-------68999--9999-8808998501105699998---8431011
Q gi|254780662|r 861 FEGQEIIHPDNTVCLDGNDPYFVVAADKGTAT-------FSDTA--NILA-QEAKFWLDDAFASGGSMGY---DHKKMGI 927 (1576)
Q Consensus 861 ~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~-------fsD~A--n~ia-~~~gfwlgdAFaSGgs~Gy---dHK~mGI 927 (1576)
+..|++..| =|+-+|.-|.==|--|-.-|.. -+||+ |.+- ..+|-- |=+|-.||-+|+ =|-.|||
T Consensus 429 V~~G~l~aP-ivigRDH~D~gs~aSP~RETe~m~DGSda~ADw~ilN~~~n~a~GAt-wVs~H~GGGVG~G~~i~~G~~~ 506 (557)
T 1uwk_A 429 VRSGELSAP-VVIGRDHLDSGSVSSPNAETEAMRDGSDAVSDWPLLNALLNTAGGAT-WVSLHHGGGVGMGFSQHSGMVI 506 (557)
T ss_dssp HHHTSSSSC-EEEEECSCSTTSEECTTTTTTTCTTSCTTBCHHHHHHHHHHHHHTCS-EEEEEESTTTCTTSCEEEEEEE
T ss_pred HHCCCCCCC-EEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCE-EEEEECCCCCEEEEEEECCEEE
T ss_conf 975961278-89667666655776874010247660046550698999886415880-8999628864052577185699
Q ss_pred CHHHHHHHHHHHHHHCCCCC
Q ss_conf 46789999999999808996
Q gi|254780662|r 928 TARGAWETVKRHFREMDIDI 947 (1576)
Q Consensus 928 TarGaw~~v~rhfrelg~D~ 947 (1576)
-+-|--++-+|.=|-|--|+
T Consensus 507 v~DGt~ea~~rl~~~L~~D~ 526 (557)
T 1uwk_A 507 VCDGTDEAAERIARVLTNDP 526 (557)
T ss_dssp EECSCHHHHHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHCCCC
T ss_conf 92397999999999732277
No 33
>1x6m_A GFA, glutathione-dependent formaldehyde-activating enzyme; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Probab=32.84 E-value=12 Score=12.12 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=47.0
Q ss_pred CCEEEEEEECCCCCEEEEEEEEEEECHHH--HCCCHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCC
Q ss_conf 64899987869998877878852100476--26885546208999999999748898887879999987228
Q gi|254780662|r 295 MDHIGIKHFDERGNLIGELHVVGFFTRLV--YSQRASKIPLLREKIVKVQNLLNFHPNSHSSRMLQNTLEFY 364 (1576)
Q Consensus 295 lDyIgVK~fDa~G~viGE~RFlGLFTSsA--Y~~sv~~IPiLRrKV~~VL~~sGf~p~SHsgK~L~~ILEty 364 (1576)
+++|-.-.+|+.+.+-=+ .=.|+|+. -...|.++|-+|.+.+.. ||.|-.--.-.|++.+++|
T Consensus 122 l~~V~~GtLDd~~~~~P~---~hiFvsSki~~~~~p~~~~~~~~~~~~~----gl~~~d~l~p~lm~~i~~~ 186 (196)
T 1x6m_A 122 LDFVHTELSDEDGWSAPE---FAAFVSSIIESGVDPSRMEAIRARLREL----GLEPYDALSPPLMDAIATH 186 (196)
T ss_dssp EEEECGGGBSCCCCCCCC---EEESGGGGGGGTCCGGGHHHHHHHHHHH----TCEECSSSCHHHHHHHHHH
T ss_pred EEEEEEEECCCCCCCCCC---EEEEEECCHHCCCCHHHHHHHHHHHHHC----CCCCCCCCCHHHHHHHHHH
T ss_conf 279985631899878976---8978723131065844456788666644----7998777798999999997
No 34
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=32.72 E-value=12 Score=12.11 Aligned_cols=11 Identities=18% Similarity=0.090 Sum_probs=4.1
Q ss_pred EEEEEECCCCC
Q ss_conf 68998555103
Q gi|254780662|r 1104 AKVIGEGANLG 1114 (1576)
Q Consensus 1104 ~kvi~EG~NLg 1114 (1576)
..+.|+.|.+-
T Consensus 237 ~~i~g~~G~~~ 247 (349)
T 3i23_A 237 FIVHGSNGSFI 247 (349)
T ss_dssp EEEEESSEEEE
T ss_pred EEEEEECCEEE
T ss_conf 99998335899
No 35
>2jch_A Penicillin-binding protein 1B; peptidoglycan synthesis multifunctional enzyme, cell WALL, peptidoglycan, gamma lactam antibiotics; HET: PL7; 2.4A {Streptococcus pneumoniae} PDB: 2jci_A* 2je5_A*
Probab=31.63 E-value=8.1 Score=13.68 Aligned_cols=16 Identities=25% Similarity=0.233 Sum_probs=8.1
Q ss_pred CCC-CHHHHHHHHHHHH
Q ss_conf 877-4389999999997
Q gi|254780662|r 95 DNI-PFLYQSIIGEIVA 110 (1576)
Q Consensus 95 dD~-PfLvDSv~~~l~~ 110 (1576)
+++ |.|+|.+.+.=-+
T Consensus 60 ~~ip~~l~~A~va~ED~ 76 (720)
T 2jch_A 60 EQISENLKKAIIATEDE 76 (720)
T ss_dssp -----------------
T ss_pred HHCCHHHHHHHHHHHHC
T ss_conf 98799998565458628
No 36
>2v9y_A Phosphoribosylformylglycinamidine cyclo-ligase; multifunctional enzyme, structural genomics consortium, nucleotide-binding, purine biosynthesis; 2.10A {Homo sapiens}
Probab=31.31 E-value=13 Score=11.93 Aligned_cols=67 Identities=10% Similarity=0.098 Sum_probs=35.4
Q ss_pred EEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCEECCCCCEEEE
Q ss_conf 89821444217989998709885542888999863036530443387421112689862001521000000258830468
Q gi|254780662|r 1026 IISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRAPRENNADIGDKGNNILRVTADKVRAK 1105 (1576)
Q Consensus 1026 v~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYvka~~e~~~~vgd~and~~rv~g~~lr~k 1105 (1576)
-......++|+++..+..- +.+.+++.|+.+ -||+||| +|=.-.+.++ +++-+.++-.|. .|.
T Consensus 239 ~~~I~~~~~~ip~~f~~i~--~~g~i~~~Em~~---------tFN~GiG-mvliV~~~~~---e~vl~~l~~~g~--~a~ 301 (334)
T 2v9y_A 239 GVDLDAQTWRIPRVFSWLQ--QEGHLSEEEMAR---------TFNCGVG-AVLVVSKEQT---EQILRGIQQHKE--EAW 301 (334)
T ss_dssp EEEEEGGGSCCCHHHHHHH--HHHTCCHHHHHH---------HCCTTEE-EEEEECGGGH---HHHHHHHHHTTC--CEE
T ss_pred EEEEECCCCCCCHHHHHHH--HHCCCCHHHHHH---------HHCCCCC-EEEEECHHHH---HHHHHHHHHCCC--CCE
T ss_conf 8999535689747999999--967989999997---------6167751-8999858999---999999997799--838
Q ss_pred EEEE
Q ss_conf 9985
Q gi|254780662|r 1106 VIGE 1109 (1576)
Q Consensus 1106 vi~E 1109 (1576)
+|||
T Consensus 302 vIG~ 305 (334)
T 2v9y_A 302 VIGS 305 (334)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9999
No 37
>1tlt_A Putative oxidoreductase (virulence factor MVIM homolog); structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=30.17 E-value=13 Score=11.78 Aligned_cols=21 Identities=14% Similarity=0.302 Sum_probs=7.6
Q ss_pred CCEEEECCCCCCCCCHHHHHHHH
Q ss_conf 94368677788137989999999
Q gi|254780662|r 983 HSDIFIDPDPNSETTFDERKRLF 1005 (1576)
Q Consensus 983 h~hif~DP~PD~~~s~~Er~RLf 1005 (1576)
+.|||++-- .+.+.+|-++|.
T Consensus 89 gkhv~~EKP--~~~~~~e~~~l~ 109 (319)
T 1tlt_A 89 GVHVCVDKP--LAENLRDAERLV 109 (319)
T ss_dssp TCEEEEESS--SCSSHHHHHHHH
T ss_pred CCEEEEECC--CHHHHHHHHHHH
T ss_conf 987999636--502466777777
No 38
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=28.95 E-value=14 Score=11.62 Aligned_cols=54 Identities=6% Similarity=-0.018 Sum_probs=40.8
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCC
Q ss_conf 865799994787743899999999977991279984648999889973742367788766336999995799
Q gi|254780662|r 85 ISISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKI 156 (1576)
Q Consensus 85 s~~tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~ 156 (1576)
+.+-|+.+.++|.|=||.+|+..|.++|..|....+=+= . ...--+|.++++..
T Consensus 5 ~~~~ILt~~CpD~~GIVa~vs~~l~~~g~NI~~~~q~~D-----~-------------~~~~FFmRi~f~~~ 58 (287)
T 3nrb_A 5 NNQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFND-----E-------------DSSKFFMRVSVEIP 58 (287)
T ss_dssp TTEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE-----T-------------TTTEEEEEEEEECC
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCC-----C-------------CCCEEEEEEEEECC
T ss_conf 876999998999886599999999978998827405348-----9-------------99808999999758
No 39
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosynthesis, structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=27.92 E-value=14 Score=11.48 Aligned_cols=87 Identities=13% Similarity=0.165 Sum_probs=37.2
Q ss_pred HHHHHHHCCCCCCCC----------CEEEEEECC------CCCCCCCCHHHCCCCCEEEEEECCCEEEECCCC-------
Q ss_conf 999999808996548----------645996058------863324431112766208999739436867778-------
Q gi|254780662|r 936 VKRHFREMDIDIQST----------PFTVAGVGD------MSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDP------- 992 (1576)
Q Consensus 936 v~rhfrelg~D~q~~----------~fTvvgiGd------msGDVfGNgmLls~~i~lvaafdh~hif~DP~P------- 992 (1576)
+...-+|.||++... -.++.-++. .+|-|||+++ ..|++ -+|+.++=+.|+.
T Consensus 387 A~~iA~e~Gi~v~~~~~~~~~~~~n~i~~~~~~~~~~~~~v~Gtv~g~~~----~~riv-~i~g~~vd~~~~g~~L~~~~ 461 (529)
T 1ygy_A 387 APALAAERGVTAEICKASESPNHRSVVDVRAVGADGSVVTVSGTLYGPQL----SQKIV-QINGRHFDLRAQGINLIIHY 461 (529)
T ss_dssp HHHHHHHHSCEEEEEEESCCSSSSEEEEEEEECTTSCEEEEEEEEETTTT----EEEEE-EETTEEEEEESCSEEEEEEE
T ss_pred HHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEEEEECCCC----CCEEE-EECCEEEEEECCCCEEEEEE
T ss_conf 57899864955999642667665551358986489968999999978987----51179-99998899607876899982
Q ss_pred -CCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCEEE
Q ss_conf -81379899999996689870038978717897089
Q gi|254780662|r 993 -NSETTFDERKRLFDSPSSSWQDFDRKVLSKGGMII 1027 (1576)
Q Consensus 993 -D~~~s~~Er~RLf~lprssw~dyd~~liS~gGgv~ 1027 (1576)
|-----.---.++.-..-..+.+.-+.-++||--+
T Consensus 462 ~D~PG~Ig~vg~iLg~~~INIa~m~l~R~~~gg~A~ 497 (529)
T 1ygy_A 462 VDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGAT 497 (529)
T ss_dssp SCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEE
T ss_pred CCCCCHHHHHHHHHHHCCCCEECCEEECCCCCCEEE
T ss_conf 797982889999986479784027750378998589
No 40
>1r8s_E ARNO; protein transport/exchange factor; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=27.73 E-value=14 Score=11.46 Aligned_cols=59 Identities=15% Similarity=0.264 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH--------CCHHHHHHHHHHHHCCCCH
Q ss_conf 9982899999999999999998457999847899998883--------9989998889997708317
Q gi|254780662|r 1243 SLSRPEIAILLAYAKLKLSEQLLDSTLIDDPFFFSILLSY--------FPRQLSELYSEDIMNHQLR 1301 (1576)
Q Consensus 1243 gltrpelavLlay~K~~l~~~l~~s~l~dd~~~~~~l~~y--------fP~~l~~~f~~~i~~H~Lr 1301 (1576)
....++-+..|||+.|.|-.+|-.+.+..---+..+...- ||...-+..-+.|..+|++
T Consensus 129 ~f~~~d~v~~la~slimLnTdlHn~~~k~kmT~~~Fi~n~r~~~~~~~~~~e~L~~iYd~I~~~~~~ 195 (203)
T 1r8s_E 129 VFQSTDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEPFK 195 (203)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHTTTTBTTBCCCHHHHHHHHHHHHHSCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 6788338999999999998763075235766899999985478787889999999999999709871
No 41
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=26.72 E-value=15 Score=11.32 Aligned_cols=34 Identities=9% Similarity=0.053 Sum_probs=29.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 5799994787743899999999977991279984
Q gi|254780662|r 87 ISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVH 120 (1576)
Q Consensus 87 ~tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~H 120 (1576)
.-|+.+.++|.|=+|..|+..|..+|..|.-.-+
T Consensus 6 ~~IL~i~CpD~~GIVa~Vs~~l~~~g~NI~~~~q 39 (288)
T 3obi_A 6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQ 39 (288)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCC
T ss_conf 1899998999885599999999978998827103
No 42
>3jrt_A Integron cassette protein VPC_CASS2; mobIle metagenome, structural genomics, PSI-2 protein structure initiative; 2.30A {Vibrio paracholerae}
Probab=26.62 E-value=13 Score=11.77 Aligned_cols=10 Identities=40% Similarity=0.481 Sum_probs=4.4
Q ss_pred CCCCCCHHHH
Q ss_conf 7324404767
Q gi|254780662|r 1140 GVNCSDLEVN 1149 (1576)
Q Consensus 1140 GV~~Sd~EVn 1149 (1576)
||-.||.=+-
T Consensus 21 ~~~~~~~~~e 30 (192)
T 3jrt_A 21 GVKMSDKWIE 30 (192)
T ss_dssp CCCCCCHHHH
T ss_pred CCCCCHHHHH
T ss_conf 3002147999
No 43
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=26.00 E-value=15 Score=11.22 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=19.7
Q ss_pred HHHHHHCCCCCCCCCCCEEEEECC
Q ss_conf 998453287428887532787168
Q gi|254780662|r 806 VRAQKVKNAVIVPVGAKGGFYPKR 829 (1576)
Q Consensus 806 ~kaQ~vKN~vIvp~GaKGgfv~k~ 829 (1576)
-+-||.|+--+-+.|++|+|+|+.
T Consensus 66 ~~~~~~k~~~~s~~gs~Gv~Fv~t 89 (342)
T 1cja_A 66 KNLQQFKGIERSEKGTEGLFFVET 89 (342)
T ss_dssp TCGGGEEEEEECCSTTSCEEEEEE
T ss_pred HHHHHHHCEEEEECCCCEEEEEEC
T ss_conf 556653126884279855999983
No 44
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=25.66 E-value=15 Score=11.17 Aligned_cols=65 Identities=17% Similarity=0.114 Sum_probs=44.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC-----CCCCCCCHHHCCCCCEEEEEECCCEEEECCC
Q ss_conf 99988431011467899999999998089965486459960588-----6332443111276620899973943686777
Q gi|254780662|r 917 SMGYDHKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDM-----SGDVFGNGMLLSRKIQLVAAFDHSDIFIDPD 991 (1576)
Q Consensus 917 s~GydHK~mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdm-----sGDVfGNgmLls~~i~lvaafdh~hif~DP~ 991 (1576)
+.|| --..||-|..+.-++.++-... +=||.+..||-. ||=...||++.++..-. +-.|+|++|+
T Consensus 145 ~~~y---LRPetaqGif~nFkn~~~~~rk---kLPfgiaQIGk~FRnEisei~PR~GL~RvREFtQ----~D~e~F~~P~ 214 (459)
T 3ikl_A 145 FRGG---LRENLLHGALEHYVNCLDLVNK---RLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTE----ASLVWFTPPR 214 (459)
T ss_dssp CTTB----CSCSHHHHHHHTTTTTGGGTT---BSSEEEEEEEEEECCC----------CCCCEEEE----EEEEEEECGG
T ss_pred CCCC---CCCCCCCCHHHHHHHHHHHCCC---CCCEEEEEECCCCCCCCCCCCCCCCCEECCCEEE----EEEEEEECCC
T ss_conf 4245---6622345158879999985377---8986677850111465465567777303343472----0589996872
No 45
>2oo4_A Notch 2, neurogenic locus notch homolog protein 2, HN2, notch2, NOTC2; alpha-beta-sandwich, SEA domain, LNR, LIN12 notch repeat, cysteine-rich; 2.00A {Homo sapiens}
Probab=25.29 E-value=16 Score=11.12 Aligned_cols=62 Identities=11% Similarity=0.028 Sum_probs=37.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECC
Q ss_conf 79999478774389999999997799127998464899988997374236778876633699999579
Q gi|254780662|r 88 SIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLK 155 (1576)
Q Consensus 88 tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr 155 (1576)
+++-||.-+++-+.......|...+ .++|..+.+++|..|+..-..-. +...-|.+++|||-
T Consensus 125 ~l~~~~~~~~~~~~~~~~~~l~~l~----~~l~~~~~~~~d~~~~~~~~~~~--~~~~~~~v~l~~dn 186 (234)
T 2oo4_A 125 TLVIVVLMPPEQLLQDARSFLRALG----TLLHTNLRIKRDSQGELMVYPYY--GEVAGSKVFLEIDN 186 (234)
T ss_dssp EEEEEESSCHHHHHHTHHHHHHHHH----HHHTSEEEECBCTTSCBCEEEEE--SSSEEEEEEEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHH----HHHCEEEEEEECCCCCCEEEECC--CCCCCEEEEEEECC
T ss_conf 1899996088999876788999999----87410279988898980577358--99765599999566
No 46
>3fwm_A Penicillin-binding protein 1B; bacterial cell WALL synthesis, antibiotics design, transferase, hydrolase; HET: M0E; 2.16A {Escherichia coli} PDB: 3fwl_A*
Probab=24.92 E-value=16 Score=11.07 Aligned_cols=59 Identities=19% Similarity=0.250 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH-----HHCCCCCHHHHHHHHH
Q ss_conf 68978889999999999976987564356999963998999999999999998-----8188889899999997
Q gi|254780662|r 600 RFDLVDRRDALVEAFKYIFHERVDNDSFNHLIMLTDLRVYEISVLRSYARYLR-----QASVTWSQNFIARVLS 668 (1576)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~e~D~~n~Lv~~~~l~~r~v~~lra~~~yl~-----Q~~~~~s~~~i~~~l~ 668 (1576)
.+.++++-+.+.+|+.++ |+..|.. ..|++|+ .++||....++ |-|.+.+|.++-+.+.
T Consensus 162 ~v~~~~iP~~l~~A~la~-----ED~~Fy~---H~Gvd~~--~i~RA~~~nl~~g~~~qGgSTiTQQl~Kn~~l 225 (751)
T 3fwm_A 162 FVPRSGFPDLLVDTLLAT-----EDRHFYE---HDGISLY--SIGRAVLANLTAGRTVQGASTLTQQLVKNLFL 225 (751)
T ss_dssp CCCSTTSCHHHHHHHTTT-----C--------------------------------------CHHHHHHHHHHC
T ss_pred ECCHHHCCHHHHHHHHHH-----HCCCCCC---CCCCCHH--HHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCC
T ss_conf 717699699998550205-----2574135---7980999--99999999711788477714099999876116
No 47
>2kzv_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; NMR {Chromobacterium violaceum}
Probab=24.41 E-value=15 Score=11.19 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=9.7
Q ss_pred CCCCCCCCCHHHHHHHHHCC
Q ss_conf 48898887879999987228
Q gi|254780662|r 345 LNFHPNSHSSRMLQNTLEFY 364 (1576)
Q Consensus 345 sGf~p~SHsgK~L~~ILEty 364 (1576)
..|+|.+|-++.|..+++++
T Consensus 41 PdFDpR~YG~~kLs~Li~a~ 60 (92)
T 2kzv_A 41 PSFDPRNWGHGRLSQMVKKL 60 (92)
T ss_dssp TTCCTTTTCSSHHHHHHHTC
T ss_pred CCCCCCCCCCCCHHHHHHHC
T ss_conf 79995106824099999865
No 48
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A*
Probab=24.00 E-value=16 Score=10.93 Aligned_cols=128 Identities=15% Similarity=0.239 Sum_probs=66.7
Q ss_pred CEECCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHCCCCCC--CC---------CCCCCCCC--HHHHHHHHHH
Q ss_conf 03053898679981778883268999999988089985011056999--98---------84310114--6789999999
Q gi|254780662|r 872 TVCLDGNDPYFVVAADKGTATFSDTANILAQEAKFWLDDAFASGGSM--GY---------DHKKMGIT--ARGAWETVKR 938 (1576)
Q Consensus 872 vv~~d~~d~ylvvaaDkgTa~fsD~An~ia~~~gfwlgdAFaSGgs~--Gy---------dHK~mGIT--arGaw~~v~r 938 (1576)
+++.+..+|-+++|.--......|+. ..++.|+-+-.-+.-||.+ |- +++.+.+. -+-..+.+..
T Consensus 35 ~lr~~~~~p~v~iG~~q~~~~ev~~~--~~~~~gi~vvRR~tGGGaV~hd~g~l~~s~i~~~~~~~~~~~y~~i~~~i~~ 112 (262)
T 2c8m_A 35 ILRFYRHDRSVIIGYFQVAEEEVDLD--YMKKNGIMLARRYTGGGAVYHDLGDLNFSVVRSSDDMDITSMFRTMNEAVVN 112 (262)
T ss_dssp EEEEECCSSEEEECTTCCHHHHSCHH--HHHHTTCEEEECSSCSCCEEECTTEEEEEEEEECSSCCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCEEEECCCCCHHHHHCHH--HHHHCCCCEEEEECCCCEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 89998279969988889835652989--9987699589970798379977998699998706899999999999999999
Q ss_pred HHHHCCCCCCCCCEEEEEE-CCCC-------CCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 9998089965486459960-5886-------3324431112766208999739436867778813798999999966898
Q gi|254780662|r 939 HFREMDIDIQSTPFTVAGV-GDMS-------GDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSS 1010 (1576)
Q Consensus 939 hfrelg~D~q~~~fTvvgi-Gdms-------GDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~lprs 1010 (1576)
.|+++|++....+..-+.+ +... ..+.||++..++. +.+-|--+.+|+|+ ....+++..|..
T Consensus 113 ~l~~lGi~a~~~~~~~~~~~~~~~~dl~~~~~Ki~G~a~~~~~~----~~l~hgsll~~~d~------~~~~~~l~~p~~ 182 (262)
T 2c8m_A 113 SLRILGLDARPGELNDVSIPVNKKTDIMAGEKKIMGAAGAMRKG----AKLWHAAMLVHTDL------DMLSAVLKVPDE 182 (262)
T ss_dssp HHHHTTCCCEECCBCCTTSSSSBTTSEEETTEEEEEEEEEEETT----EEEEEEEEESSCCH------HHHHHHTC----
T ss_pred HHHHCCCCEEECCCCCCEEECCCCCCCCCCCCCEEEEEEEEECC----EEEEEEEEEECCCH------HHHHHHHCCCCH
T ss_conf 99984951588576882673365664123566125356786588----79999998863899------999986489931
Q ss_pred C
Q ss_conf 7
Q gi|254780662|r 1011 S 1011 (1576)
Q Consensus 1011 s 1011 (1576)
.
T Consensus 183 ~ 183 (262)
T 2c8m_A 183 K 183 (262)
T ss_dssp -
T ss_pred H
T ss_conf 0
No 49
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=23.94 E-value=16 Score=10.93 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=30.3
Q ss_pred CCEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEEC
Q ss_conf 87079999747987669898888985695797215
Q gi|254780662|r 537 DGKVQIKIFHARGPFSLSKRVPLLENLGFTVISED 571 (1576)
Q Consensus 537 ~~~~~lk~~~~~~~~~Ls~~~p~l~~~G~~v~~e~ 571 (1576)
.+..|+.+.|.+.|-.|+++..+|..-|+.+.+..
T Consensus 329 ~~~~r~~~~~~n~pgvl~~i~~~l~~~~~ni~~~~ 363 (404)
T 1sc6_A 329 HGGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQY 363 (404)
T ss_dssp CSSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHH
T ss_conf 78748999835877668999999987699879975
No 50
>2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ...
Probab=23.71 E-value=9.7 Score=12.95 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=15.1
Q ss_pred HHHHCCCCCCCCCEEEEEECCC-CCCCCCCH
Q ss_conf 9998089965486459960588-63324431
Q gi|254780662|r 939 HFREMDIDIQSTPFTVAGVGDM-SGDVFGNG 968 (1576)
Q Consensus 939 hfrelg~D~q~~~fTvvgiGdm-sGDVfGNg 968 (1576)
--+++|-++.+-+.--+--|.+ .||+|+|-
T Consensus 28 eA~~lGW~~~kgnL~~v~pGk~IGGd~F~Nr 58 (143)
T 2c4b_A 28 EAQALGWVASKGNLADVAPGKSIGGDIFSNR 58 (143)
T ss_dssp HHHHTTCCGGGTCHHHHSTTCEEEEEEECCT
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9998499977586100488752067533478
No 51
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus subtilis}
Probab=23.31 E-value=17 Score=10.83 Aligned_cols=85 Identities=26% Similarity=0.212 Sum_probs=52.2
Q ss_pred CCCCCCCCCCCCEECCCCCCEEEEECCCCCCH-------HHHHH--HHHH-HHCCCCCCCHHCCCCCCCCC---CCCCCC
Q ss_conf 68884028831030538986799817788832-------68999--9999-88089985011056999988---431011
Q gi|254780662|r 861 FEGQEIIHPDNTVCLDGNDPYFVVAADKGTAT-------FSDTA--NILA-QEAKFWLDDAFASGGSMGYD---HKKMGI 927 (1576)
Q Consensus 861 ~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~-------fsD~A--n~ia-~~~gfwlgdAFaSGgs~Gyd---HK~mGI 927 (1576)
+..|++..| =|+-+|.-|.==|--|-.-|.. -+||+ |.+- ..+|-- |=+|-.||-+|+- |-.+||
T Consensus 425 V~~G~l~aP-IvigRDHlD~gs~aSP~RETe~m~DGSda~ADw~ilN~~~n~a~GAt-wVs~H~GGGVG~G~si~~G~~~ 502 (552)
T 2fkn_A 425 VRTGELKAP-VVIGRDHLDCGSVASPNRETEAMKDGSDAVGDWAVLNALVNTAAGAS-WVSFHHGGGVGMGYSLHAGMVA 502 (552)
T ss_dssp HHHTSSSSC-EEEEECSCSSSSEECTTTTTTTCTTSCTTBCHHHHHHHHHHHHHTCS-EEEEEESTTTCTTSCEEEEEEE
T ss_pred HHCCCCCCC-EEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCE-EEEEECCCCCEEEEEEECCEEE
T ss_conf 975960378-89555655556888984110247760046550698999886415880-8999628864052577085699
Q ss_pred CHHHHHHHHHHHHHHCCCCC
Q ss_conf 46789999999999808996
Q gi|254780662|r 928 TARGAWETVKRHFREMDIDI 947 (1576)
Q Consensus 928 TarGaw~~v~rhfrelg~D~ 947 (1576)
-+-|--++-+|.=|-|--|+
T Consensus 503 V~DGt~~a~~rl~~~L~~D~ 522 (552)
T 2fkn_A 503 VADGSELADERLARVLTSDP 522 (552)
T ss_dssp EECSSHHHHHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHCCCC
T ss_conf 92397999999999732277
No 52
>1iaz_A Equinatoxin II; beta-sandwich; 1.90A {Actinia equina} SCOP: b.97.1.1 PDB: 1kd6_A 1tzq_A
Probab=22.99 E-value=17 Score=10.78 Aligned_cols=12 Identities=8% Similarity=0.354 Sum_probs=5.6
Q ss_pred CEEEEEEEECCC
Q ss_conf 707999974798
Q gi|254780662|r 538 GKVQIKIFHARG 549 (1576)
Q Consensus 538 ~~~~lk~~~~~~ 549 (1576)
+-+.+++|....
T Consensus 115 NW~nV~v~~g~~ 126 (179)
T 1iaz_A 115 NWWNVRIYKGKR 126 (179)
T ss_dssp CEEEEEEESSCC
T ss_pred HHHEEEECCCCC
T ss_conf 211134205885
No 53
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*
Probab=22.93 E-value=17 Score=10.77 Aligned_cols=13 Identities=8% Similarity=-0.023 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 7899999999998
Q gi|254780662|r 930 RGAWETVKRHFRE 942 (1576)
Q Consensus 930 rGaw~~v~rhfre 942 (1576)
.|.+.++++|..+
T Consensus 277 ~GS~~~~~~~~~~ 289 (421)
T 2ek8_A 277 IGSKKYAASLSED 289 (421)
T ss_dssp HHHHHHHTTCCHH
T ss_pred CCHHHHHHHHHHH
T ss_conf 6589999863043
No 54
>2v6z_M DNA polymerase epsilon subunit 2; DNA replication, DPOE2, transferase, AAA protein family; HET: DNA; NMR {Homo sapiens}
Probab=22.52 E-value=17 Score=10.71 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHH
Q ss_conf 89999999997488988878799999872289488
Q gi|254780662|r 334 LREKIVKVQNLLNFHPNSHSSRMLQNTLEFYPRDE 368 (1576)
Q Consensus 334 LRrKV~~VL~~sGf~p~SHsgK~L~~ILEtyPRDE 368 (1576)
||.+|-..++..||.-.+-.-+-|.++|+..+..|
T Consensus 30 LRk~IvsaFkL~Gl~Lr~EAs~YLae~L~~~~~~e 64 (99)
T 2v6z_M 30 LRSRALSAFKLRGLLLRGEAIKYLTEALQSISELE 64 (99)
T ss_dssp HHHHHHHHHHHTTCEECHHHHHHHHHHTTTSCTTT
T ss_pred HHHHHHHHHHHCCCEEHHHHHHHHHHHHCCCCHHH
T ss_conf 99999988743001130899999999956798899
No 55
>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A
Probab=22.51 E-value=17 Score=10.71 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=8.0
Q ss_pred HHHHHHHHCCCCCCC
Q ss_conf 999999980899654
Q gi|254780662|r 935 TVKRHFREMDIDIQS 949 (1576)
Q Consensus 935 ~v~rhfrelg~D~q~ 949 (1576)
+|++.-+|+|||+..
T Consensus 10 ~aRkla~e~gidl~~ 24 (62)
T 1w4i_A 10 AARRLAKELGIDLSK 24 (62)
T ss_dssp HHHHHHHHHTCCGGG
T ss_pred HHHHHHHHCCCCHHH
T ss_conf 999999992998877
No 56
>3jud_A AIG2-like domain-containing protein 1; cyclotransferase, gamma-glutamylamine cyclotransferase, gamma-glutamyl-epsilon-lysine; 0.98A {Homo sapiens} PDB: 3jub_A 3juc_A
Probab=21.68 E-value=18 Score=10.58 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=19.9
Q ss_pred HCCCCCEEEEEEEC--------CCCCEEEEEEEEE
Q ss_conf 10578517999746--------6689899999821
Q gi|254780662|r 387 IMDRPRVRVLPRID--------RFNHFFSSLIYIP 413 (1576)
Q Consensus 387 L~eR~rvRLFlR~D--------~fgRFvS~LVyvP 413 (1576)
+++|..+.|.+..+ .-+.-+.|.||+-
T Consensus 87 ~Y~R~~v~V~l~~~~~~~~~~~~~~~~~~awvY~~ 121 (153)
T 3jud_A 87 LYQRTVLRVQLLEDRAPGAEEPPAPTAVQCFVYSR 121 (153)
T ss_dssp SCEEEEEEEEEEC------CCSCCCCEEEEEEEEB
T ss_pred CEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEC
T ss_conf 36899999997268664433467775699999987
No 57
>3gfz_A Klebsiella pneumoniae BLRP1; TIM-barrel, EAL domain, BLUF domain, hydrolase, signaling protein; HET: C2E FMN; 2.05A {Klebsiella pneumoniae subsp} PDB: 3gfy_A* 3gfx_A* 3gg0_A* 3gg1_A* 2kb2_A*
Probab=21.47 E-value=18 Score=10.55 Aligned_cols=52 Identities=13% Similarity=0.021 Sum_probs=38.0
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHCCCCCCCC
Q ss_conf 8630368327799999999999752228730589886368863957778888887
Q gi|254780662|r 708 ALLKVPSLDDDTVLRSYVNLISGTLRTNYFQKNQDDIALVFKFDSRKINSVGTDE 762 (1576)
Q Consensus 708 ~l~~V~~ld~drilr~~~~~i~atlRTN~y~~~~~~~~lsfkld~~~i~~~p~p~ 762 (1576)
...+.....+||.++-+.+++.+.-|.|||.+.. ....+|+.+... +++...
T Consensus 121 ~~~~~~~~~~dr~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~al 172 (413)
T 3gfz_A 121 STFGVTEPVNDRMFRLLSAFIADGGRYCLPEPLQ-PSRWMMMPASGT--AAPQHL 172 (413)
T ss_dssp CC-----CTTSHHHHHHHHHHHHGGGGCCCGGGC-GGGEEEEEC--C--CCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-HHHHHHCCCCHH--HHHHHH
T ss_conf 6643010234089999999870656501478773-566764546555--699764
No 58
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4
Probab=21.41 E-value=18 Score=10.54 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=16.5
Q ss_pred CCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCC
Q ss_conf 886332443111276620899973943686777881
Q gi|254780662|r 959 DMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNS 994 (1576)
Q Consensus 959 dmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~ 994 (1576)
-|. .|-+|||+||- .-+....++.|++|.
T Consensus 76 kir-Gv~SeGMil~~------~d~~~~~ll~p~~~~ 104 (111)
T 1pyb_A 76 KIF-GIESQGMILAA------SDGENLSVIVPDRDV 104 (111)
T ss_dssp CTT-SCCBSSEECEE------ECSSCEEEEEESSCC
T ss_pred EEC-CCCCCEEEEEE------ECCCCEEEEECCCCC
T ss_conf 176-84332799988------669966998689998
No 59
>3eto_A Neurogenic locus notch homolog protein 1; alpha-beta sandwich, HD domain, LNR repeat, calcium-binding, SEA domain, autoinhibition, activator, T-all; 2.00A {Homo sapiens} PDB: 3l95_X* 3i08_B 1pb5_A
Probab=21.40 E-value=18 Score=10.54 Aligned_cols=63 Identities=10% Similarity=-0.020 Sum_probs=36.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECC
Q ss_conf 79999478774389999999997799127998464899988997374236778876633699999579
Q gi|254780662|r 88 SIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLK 155 (1576)
Q Consensus 88 tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr 155 (1576)
+++-||.=++.=+.....+.|...+ .++|..+.+++|..|+-.-+.=. .....-|.+++|||-
T Consensus 129 ~l~~~~~~~~~~~~~~~~~~l~~~~----~~l~~~v~~~~d~~~~~~i~~~~-~~~~~g~~v~l~~dn 191 (242)
T 3eto_A 129 TLVVVVLMPPEQLRNSSFHFLRELS----RVLHTNVVFKRDAHGQQMIFPYY-GMDVRGSIVYLEIDN 191 (242)
T ss_dssp EEEEEESSCHHHHHHTHHHHHHHHH----HHHTSEEEECBCTTSCBCEEEEE-CSSCEEEEEEEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHH----HHHCCEEEEEECCCCCEEEEECC-CCCCCCEEEEEEEEH
T ss_conf 0899995399999887899999999----87452169876488882255036-898651499999742
No 60
>1imo_A DNA ligase III; parallel beta sheet; HET: DNA; NMR {Homo sapiens} SCOP: c.15.1.2 PDB: 1in1_A*
Probab=21.32 E-value=18 Score=10.53 Aligned_cols=42 Identities=21% Similarity=0.428 Sum_probs=25.9
Q ss_pred CCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHCCCCC-CCCCCH
Q ss_conf 662089997394368677788137989999999668987-003897
Q gi|254780662|r 973 RKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSS-WQDFDR 1017 (1576)
Q Consensus 973 ~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~lprss-w~dyd~ 1017 (1576)
+...|--.|.+..||++.+ --+.++++|++-.-+-. -.+|+.
T Consensus 9 ~~k~L~diF~G~~iyi~~~---~p~~~~L~r~i~a~GG~~~~~~~~ 51 (88)
T 1imo_A 9 QTKVLLDIFTGVRLYLPPS---TPDFSRLRRYFVAFDGDLVQEFDM 51 (88)
T ss_dssp STTCCCSSSTTCBCCCCTT---STTHHHHHHHHHHHTCBCCCTTCC
T ss_pred CCCCCCHHHCCEEEEECCC---CCCHHHHHHHHHHCCCEEEEECCC
T ss_conf 3353611338969997999---996899999999829988523367
No 61
>1ou9_A Stringent starvation protein B homolog; SSRA peptide-binding protein, homodimer, transport protein; 1.80A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1oul_A 1zsz_C
Probab=20.84 E-value=19 Score=10.45 Aligned_cols=15 Identities=20% Similarity=0.656 Sum_probs=12.1
Q ss_pred HHHHHHHHHHCCEEE
Q ss_conf 999999997289188
Q gi|254780662|r 209 ALTFLNWLNEDNFQF 223 (1576)
Q Consensus 209 a~aFL~WL~ddhFtF 223 (1576)
..++.+|+.|++||-
T Consensus 13 iRA~yeW~~Dn~~TP 27 (129)
T 1ou9_A 13 LRAYYDWLVDNSFTP 27 (129)
T ss_dssp HHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHCCCCC
T ss_conf 999999997689986
No 62
>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus HB8}
Probab=20.74 E-value=19 Score=10.43 Aligned_cols=20 Identities=30% Similarity=0.730 Sum_probs=12.1
Q ss_pred HHHHHHHHCCCCCCCCCEEEEEEC
Q ss_conf 999999980899654864599605
Q gi|254780662|r 935 TVKRHFREMDIDIQSTPFTVAGVG 958 (1576)
Q Consensus 935 ~v~rhfrelg~D~q~~~fTvvgiG 958 (1576)
+|++.-+|.|||+.. |.|+|
T Consensus 5 ~arklA~e~gidl~~----V~gTG 24 (40)
T 2eq8_C 5 SIRRLARELGVDLTR----LRGTG 24 (40)
T ss_dssp HHHHHHHHHTCCGGG----CCCCS
T ss_pred HHHHHHHHCCCCHHH----CCCCC
T ss_conf 999999993998988----80789
No 63
>3gaa_A Uncharacterized protein TA1441; the protein with unknown function from thermoplasma acidophilum, structural genomics,PSI, MCSG; 2.70A {Thermoplasma acidophilum}
Probab=20.40 E-value=19 Score=10.38 Aligned_cols=124 Identities=11% Similarity=0.209 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCEECCCCCCEEEEE-----CCCCCCHHHHHHHHHHHHCC----CCCCCHHCCCCCCCCCCC--CCCCCHH
Q ss_conf 888402883103053898679981-----77888326899999998808----998501105699998843--1011467
Q gi|254780662|r 862 EGQEIIHPDNTVCLDGNDPYFVVA-----ADKGTATFSDTANILAQEAK----FWLDDAFASGGSMGYDHK--KMGITAR 930 (1576)
Q Consensus 862 ~~g~vv~p~~vv~~d~~d~ylvva-----aDkgTa~fsD~An~ia~~~g----fwlgdAFaSGgs~GydHK--~mGITar 930 (1576)
.+|.+.+|-++.. .+++..+++. ++.+--.|+.-....++++| +.++...+ .+-+|+ .+++++.
T Consensus 71 ~~g~~~~p~riy~-~~~~~~~l~~~~~p~~~~~~~~~~~~i~~~~~~~gv~~ii~l~G~~~----~~~~~~~~v~~~~~~ 145 (252)
T 3gaa_A 71 VGGKLRHPFRIYA-NNSNTVLVAMCEVPISSAHIYEISNTLMNWIDQVGASEIVIMEGSPA----NGIPEERPVFAVAEK 145 (252)
T ss_dssp GGGCCBCSEEEEE-CTTSCEEEEEESSCCCGGGHHHHHHHHHHHHHHHTCSEEEEEEEEEE----SCCCSSCCCEEECCH
T ss_pred ECCEECCCEEEEE-CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC----CCCCCCCCEEEEECC
T ss_conf 4996856169984-38976999960368981379999999999999829938999721027----899977617999776
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHC-CCCCEEEEEECCCEEEECCCCCCCCCHHHHHHH
Q ss_conf 89999999999808996548645996058863324431112-766208999739436867778813798999999
Q gi|254780662|r 931 GAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGMLL-SRKIQLVAAFDHSDIFIDPDPNSETTFDERKRL 1004 (1576)
Q Consensus 931 Gaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgmLl-s~~i~lvaafdh~hif~DP~PD~~~s~~Er~RL 1004 (1576)
....-+.+.|+.+.+. -+++||+|=..+-+-.. =+.++|++-..|- -|||..+-+=.+.|
T Consensus 146 ----~~~~~l~~~~~~~~~~----g~i~G~~g~ll~~~~~~gi~~~~l~~~~~~~------~pDp~AA~~ll~~l 206 (252)
T 3gaa_A 146 ----PKLDKFKKAGIQPADS----AIIAGMGGGILNECLVRKITGLSFITPTSVD------IPDPGAVLSIIEAI 206 (252)
T ss_dssp ----HHHHHHHHTTCEECCC----SEECHHHHHHHHHHHHHTCEEEEEEEEEESS------SCCHHHHHHHHHHH
T ss_pred ----CCHHHHHHCCCCCCCC----CCCCCHHHHHHHHHHHCCCCEEEEEEECCCC------CCCHHHHHHHHHHH
T ss_conf ----4477787459874577----7656688999999998699759999717887------78989999999999
No 64
>3cdd_A Prophage MUSO2, 43 kDa tail protein; structural genomics, PSI- 2, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.10A {Shewanella oneidensis mr-1} SCOP: b.106.1.1 b.106.1.1
Probab=20.19 E-value=19 Score=10.34 Aligned_cols=12 Identities=8% Similarity=-0.111 Sum_probs=5.3
Q ss_pred HHHHHHHCCCCC
Q ss_conf 999999748898
Q gi|254780662|r 338 IVKVQNLLNFHP 349 (1576)
Q Consensus 338 V~~VL~~sGf~p 349 (1576)
++.|++..|+..
T Consensus 123 v~~i~~~~Gl~~ 134 (361)
T 3cdd_A 123 ADIVCKPFGIKV 134 (361)
T ss_dssp HHHHHGGGTCCE
T ss_pred HHHHHHHCCCCE
T ss_conf 999999819857
No 65
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomics, NPPSFA; 2.30A {Methanocaldococcus jannaschii DSM2661}
Probab=20.09 E-value=13 Score=11.73 Aligned_cols=86 Identities=17% Similarity=0.118 Sum_probs=47.4
Q ss_pred HHHHHCCCEEEEECCEEEEECCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
Q ss_conf 88985695797215446676588873179999814306776668978889999999999976987564356999963998
Q gi|254780662|r 558 PLLENLGFTVISEDTFEIKMLADDEEHLVVLYQMDLSPATIARFDLVDRRDALVEAFKYIFHERVDNDSFNHLIMLTDLR 637 (1576)
Q Consensus 558 p~l~~~G~~v~~e~~y~i~~~~~~~~~~~~i~~f~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~D~~n~Lv~~~~l~ 637 (1576)
.+||.+|+.-|||.-- +++. ++...+|-++|.+..--+. ..|-||+..+|.|.+=--.=-. ..+|=-
T Consensus 90 qiLealgVD~IDESEV-LTpA--De~~HI~K~~F~vPFVCGa--------rnLGEALRRI~EGAaMIRTKGE--AGTGNV 156 (330)
T 2yzr_A 90 LVLEAIGVDMIDESEV-LTQA--DPFFHIYKKKFNVPFVCGA--------RNLGEAVRRIWEGAAMIRTKGE--AGTGNI 156 (330)
T ss_dssp HHHHHTTCSEEEEETT-SCCS--CSSCCCCGGGCSSCEEEEC--------SSHHHHHHHHHHTCSEEEECCC--TTSCCT
T ss_pred HHHHHCCCCCCCCCCC-CCCC--CCCCCCCCCCCCCCEECCC--------CCHHHHHHHHHCCHHHCCCCCC--CCCCCH
T ss_conf 9998709985261135-6778--7202133304777643378--------9708999988600211136798--987669
Q ss_pred HHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999988188
Q gi|254780662|r 638 VYEISVLRSYARYLRQASV 656 (1576)
Q Consensus 638 ~r~v~~lra~~~yl~Q~~~ 656 (1576)
-..|.-+|....=++++.-
T Consensus 157 veAVrH~R~i~~eI~~l~~ 175 (330)
T 2yzr_A 157 VEAVRHMRLMNEAIAQLQR 175 (330)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999975
Done!