RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase
[Candidatus Liberibacter asiaticus str. psy62]
(1576 letters)
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase;
HET: NAD; 2.80A {Pyrobaculum islandicum} (A:177-395)
Length = 219
Score = 37.1 bits (85), Expect = 0.017
Identities = 31/233 (13%), Positives = 68/233 (29%), Gaps = 51/233 (21%)
Query: 928 TARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIF 987
T G + +++ I+ + G+G++ + +++A D + +
Sbjct: 13 TGFGVAVATREMAKKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGA--KVIAVSDINGVA 70
Query: 988 IDPDPNSETTFDERKRLFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGIS 1047
+ + ++ + + + + A+ +
Sbjct: 71 YRKEGL---NVELIQKNKGLTGPALVELFTTKDNA------------EFVKNPDAIFKLD 115
Query: 1048 KQIATPSEIISAILMASVDLLWFGGIGTYIRAPRENNADIGDKGNNILRVTADKVRAKVI 1107
I P+ A N I A V+A+++
Sbjct: 116 VDIFVPA------------------------AI----------ENVIRGDNAGLVKARLV 141
Query: 1108 GEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEVNIKIALASAMRD 1160
EGAN T +A + G + D + N+GGV S LE + +
Sbjct: 142 VEGANGPTTPEAERILYERGVVVVPDILANAGGVIMSYLEWVENLQWYIWDEE 194
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme-
inhibitor complex, structural genomics, protein
structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo
sapiens} (W:)
Length = 461
Score = 31.1 bits (68), Expect = 0.97
Identities = 5/47 (10%), Positives = 12/47 (25%), Gaps = 1/47 (2%)
Query: 185 MLASLEKMQKSFCHLTG-IKEYAVEALTFLNWLNEDNFQFMGMRYHP 230
M ++ + L+ + L + D+ R
Sbjct: 1 MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKD 47
>2hjn_A MPS1 binder 1, maintenance of ploidy protein MOB1;
homodimer, cell cycle; 2.00A {Saccharomyces cerevisiae}
(A:)
Length = 236
Score = 30.7 bits (69), Expect = 1.2
Identities = 15/60 (25%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 269 RSFPE--GNDFLIITKSNVISVIYRRTY--MDHIGIKHFDERGNLIGELHVVGFFTRLVY 324
FP F VI I RR + HI HF+E L + + F
Sbjct: 151 SLFPSKVTGTFPEGFIQRVIQPILRRLFRVYAHIYCHHFNEILELNLQTVLNTSFRHFCL 210
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor;
HET: NAG; 1.7A {Phaseolus vulgaris} (A:30-313)
Length = 284
Score = 30.7 bits (67), Expect = 1.5
Identities = 4/36 (11%), Positives = 7/36 (19%)
Query: 195 SFCHLTGIKEYAVEALTFLNWLNEDNFQFMGMRYHP 230
G+ +N L+ P
Sbjct: 5 CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP 40
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
Length = 258
Score = 30.6 bits (69), Expect = 1.6
Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 38/107 (35%)
Query: 597 TIAR-------FD--LVD---RRDALVEAFKYIFHERVDNDSFNHLIML----------- 633
T AR + ++ R+ LV I + V+N+ L L
Sbjct: 8 TTAREHHSSVKYASPNLNMKYRKRQLVTREAQI-KDWVENE----LEALKLEAEEIPSED 62
Query: 634 ----TDLRVYEISVLRSYARYLRQASVTWSQNFIARVLSKNPTISQL 676
R EI LR A W +F ++P I+ L
Sbjct: 63 QNEFLLERTREI--HNEAESQLRAAQQQWGNDF----YKRDPRIAPL 103
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains,
glycosidase, hydrolase; HET: NAG BMA; 1.70A
{Phanerochaete chrysosporium} PDB: 3eqo_A* (A:)
Length = 758
Score = 30.4 bits (66), Expect = 1.7
Identities = 11/100 (11%), Positives = 20/100 (20%), Gaps = 5/100 (5%)
Query: 59 DIFAGWDHSSACCIDIREVEGINPSGISISIITVIVDNIPFLYQSIIGEIVARC---RNL 115
D S I I + I + +A+
Sbjct: 585 DSGGSQQISLWSNGGIMSESQGPVWLIGTASEHHINYQYFLKNAANHYIGLAQTETPYFQ 644
Query: 116 TM--AVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHC 153
P T QL ++ + + I +
Sbjct: 645 PNPNPPAPFITNSNFDPSQLGQGDAWAMTVQNSHGILVFG 684
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A
{Pyrococcus furiosus dsm 3638} (A:183-393)
Length = 211
Score = 28.7 bits (63), Expect = 5.1
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 1091 GNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEVN 1149
I + AD ++AK++ E AN +T +A + G D + N+GGV S E
Sbjct: 116 EEVITKKNADNIKAKIVAEVANGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFEWV 174
>2bnl_A Modulator protein RSBR; stress-response, stress response,
phosphorylation; 2.0A {Bacillus subtilis} (A:)
Length = 136
Score = 28.6 bits (64), Expect = 5.1
Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 21/110 (19%)
Query: 1348 ELESLW-QEVDKLDNQISGELQNKIYEEIRLIFINLTRLLIKNGK-FIGDIGNAVKRLV- 1404
EL LW + +L Q S +L +++YE I +I++ L +K+ I R V
Sbjct: 17 ELLQLWTDTLKELSEQESYQLTDQVYENISKEYIDILLLSVKDENAAESQISELALRAVQ 76
Query: 1405 ------------TAFHKL------NSLLQEKIPVEWLERFNNWVTNLTNK 1436
F K + L ++ E + + + + + + +
Sbjct: 77 IGLSXKFLATALAEFWKRLYTKXNDKRLPDQESTELIWQIDRFFSPINTE 126
>1fiu_A Type II restriction enzyme ngomi; protein-DNA complex,
double helix, restriction endonuclease,
restriction-modifiction systems, hydrolase; HET: DNA;
1.60A {Neisseria gonorrhoeae} (A:)
Length = 286
Score = 28.8 bits (64), Expect = 5.3
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 792 SDRAADYRTEVLGLVRAQKVKNAVIVPVGAKGGFYPKRLPS 832
SDRA + R+E L LVR +K + IV V A+ P R+ S
Sbjct: 192 SDRAQNARSEGLNLVRNRKGRLPHIVVVTAEP--TPSRISS 230
>2h8e_A Crossover junction endodeoxyribonuclease RUSA; homologous
recombination, DNA repair, resolvase, hydrolase; 1.20A
{Escherichia coli} PDB: 2h8c_A 1q8r_A (A:)
Length = 120
Score = 28.7 bits (64), Expect = 6.2
Identities = 14/92 (15%), Positives = 25/92 (27%), Gaps = 15/92 (16%)
Query: 783 KIARGGLRWSDRAADYRTEVLGLVRAQKVKNAVIVPVGAKGGFYPKRLPSEGRRDEIIKI 842
+ RG S YR V +++ + + +PV + + P RR+
Sbjct: 19 RHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHM---PDRRRRNL---- 71
Query: 843 GREAYKTYVRALLSITDNFEGQEIIHPDNTVC 874
+ D D V
Sbjct: 72 --------DNLQKAAFDALTKAGFWLDDAQVV 95
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine
oxidase, flavoenzyme, oxidoreductase; HET: FAD NAD FMN;
2.15A {Corynebacterium SP} PDB: 1vrq_C*
(C:1-36,C:118-206)
Length = 125
Score = 28.4 bits (63), Expect = 6.7
Identities = 6/47 (12%), Positives = 12/47 (25%)
Query: 608 DALVEAFKYIFHERVDNDSFNHLIMLTDLRVYEISVLRSYARYLRQA 654
D F + L+ T + + I S+ +
Sbjct: 59 DLHPREFGVNRAITTSLANIPVLLWRTGEQSWRILPRASFTEHTVHW 105
>1w2t_A Beta fructosidase; hydrolase, glycosidase, invertase,
raffinose; HET: SUC GLA CIT; 1.87A {Thermotoga maritima}
(A:1-15,A:234-432)
Length = 214
Score = 28.2 bits (62), Expect = 7.4
Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 1/82 (1%)
Query: 208 EALTFLNWLNEDNFQFMGMRYHPLVAGQKQVKLDHDMPTELGILRD-SSIVVLGFDRVTP 266
E+ + + D R ++ ++ + + D S+ D +
Sbjct: 123 ESEEVVITKSRDELIVDTTRSGVSGGEVRKSTVEDEATNRIRAFLDSCSVEFFFNDSIAF 182
Query: 267 ATRSFPEGNDFLIITKSNVISV 288
+ R PE ++ KSN + +
Sbjct: 183 SFRIHPENVYNILSVKSNQVKL 204
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA
CAP, structural genomics, PSI, protein structure
initiative; 2.10A {Encephalitozoon cuniculi}
(A:1-176,A:229-298)
Length = 246
Score = 28.4 bits (62), Expect = 7.5
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 1373 EEIRLIFINLTRLLIKNGKFIGDIGNAVKRLVTAFHKLN-SLLQEKIPVEWLE 1424
E + + N+ R L G FI + + R+V F +L SL++ K +++ E
Sbjct: 151 ESLDIAQRNIARHLRPGGYFIMTVPSDFTRMVDGFKRLGLSLVERKGFIDFYE 203
>1eh9_A Glycosyltrehalose trehalohydrolase; alpha/beta barrel, calcium
binding, covalent dimer,; 3.00A {Sulfolobus solfataricus}
(A:85-308,A:364-491)
Length = 352
Score = 28.2 bits (62), Expect = 7.7
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 976 QLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRKVLS 1021
Q V + D DP E+TF+ K + F + ++
Sbjct: 299 QGVREGRKKENGQDTDPQDESTFNASKLSWKID-EEIFSFYKILIK 343
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit;
flavoenzyme, electron transfer, folate- methylating
enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A
{Stenotrophomonas maltophilia} PDB: 2gah_C*
(C:1-38,C:120-210)
Length = 129
Score = 28.0 bits (62), Expect = 8.3
Identities = 7/47 (14%), Positives = 13/47 (27%)
Query: 608 DALVEAFKYIFHERVDNDSFNHLIMLTDLRVYEISVLRSYARYLRQA 654
D AF + L+ T + + I S+ +
Sbjct: 61 DLHPRAFAVNQAIVTSVANIPVLLWRTGEQAWRIMPRASFTEHTVHW 107
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair,
hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A
2zxp_A 1ir6_A (A:49-242)
Length = 194
Score = 28.1 bits (62), Expect = 8.8
Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 2/72 (2%)
Query: 1466 DTSLLVVLDMWSAISVGLGVDRLLSVAHNVVVDDHYENLALSAGLDWMYSARREMIVKAI 1525
+ L + +D I+ + LL V+V DH+ ++ A + +
Sbjct: 80 ASDLFLTVDC--GITNHAELRELLENGVEVIVTDHHTPGKTPPPGLVVHPALTPDLKEKP 137
Query: 1526 TTGSSVATIMQN 1537
T ++
Sbjct: 138 TGAGVAFLLLWA 149
>2i7d_A 5'(3')-deoxyribonucleotidase, cytosolic type; hydrolase; HET:
DUR; 1.20A {Homo sapiens} PDB: 2jar_A* 2jao_A*
(A:1-12,A:89-193)
Length = 117
Score = 27.9 bits (62), Expect = 9.9
Identities = 17/76 (22%), Positives = 24/76 (31%), Gaps = 20/76 (26%)
Query: 962 GDVFGNGMLLSRKIQLVAAFDHSDIFIDPDP---NSETTFDERKRLFDSP---------- 1008
G F ++L+R +V D+ ID E T LF
Sbjct: 43 GPQFVERIILTRDKTVVLG----DLLIDDKDTVRGQEETPSWEHILFTCCHNRHLVLPPT 98
Query: 1009 ---SSSWQDFDRKVLS 1021
SW D R++L
Sbjct: 99 RRRLLSWSDNWREILD 114
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.322 0.138 0.397
Gapped
Lambda K H
0.267 0.0328 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 12,038,647
Number of extensions: 572744
Number of successful extensions: 1467
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1467
Number of HSP's successfully gapped: 23
Length of query: 1576
Length of database: 4,956,049
Length adjustment: 100
Effective length of query: 1476
Effective length of database: 1,575,549
Effective search space: 2325510324
Effective search space used: 2325510324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.4 bits)