RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase
[Candidatus Liberibacter asiaticus str. psy62]
(1576 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 95.4 bits (237), Expect = 8e-20
Identities = 90/633 (14%), Positives = 185/633 (29%), Gaps = 238/633 (37%)
Query: 226 MRYHPLVAGQKQVKLDHDMPTELGI----LRDSSIVVLGFDRVTPA-TRSFPEGNDFLII 280
R PL ++ +PT L++ F+++ P T F ++
Sbjct: 6 TR--PLTLSHGSLEHVLLVPTASFFIASQLQEQ------FNKILPEPTEGFAADDEP--- 54
Query: 281 TKSNVISVIYRRTYMDHIGIKHFDERGNLIGEL--HVVGFFTR--L----VYSQRASKIP 332
+ ++ + ++ ++ + ++ + F L +++ A +
Sbjct: 55 --TTPAELVGK--FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 333 LLREKIVKVQNLL-NF----------HPNSHSSRMLQ-----------------NTLEFY 364
+VK + L+ N+ +S + + NT +++
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF 170
Query: 365 PRDELFQIDSTLLASFCEQIIDIMDRPRVRVLPR-IDRFNHFFSSLIYIPREYFDSFVRE 423
+EL + T +I + L R F+ + +
Sbjct: 171 --EELRDLYQTY-HVLVGDLIKFSA-ETLSELIRTTLDAEKVFT-------QGLN----- 214
Query: 424 KIGNYLS--EVCEGHVAFYSS-------ILEEGLVRI-HFVIV-----RSGGEI------ 462
I +L + S I G++++ H+V+ + GE+
Sbjct: 215 -ILEWLENPSNTPD-KDYLLSIPISCPLI---GVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 463 --SHPSQESLEEGVRSIVAC-------WEDKFYKSAGDGVPRFIFS------QTFRDVFS 507
H SQ G+ + A WE F+ S + +F + + +
Sbjct: 270 ATGH-SQ-----GL--VTAVAIAETDSWES-FFVSVRKAI-TVLFFIGVRCYEAYPNTSL 319
Query: 508 PEKAVEDLPYIISCAEG------------KEKL-----RVCFENK---EDGKVQIKIFHA 547
P +ED + EG +E++ + N +V+I + +
Sbjct: 320 PPSILED---SLENNEGVPSPMLSISNLTQEQVQDYVNKT---NSHLPAGKQVEISLVNG 373
Query: 548 R------GP-FSL-----------------------SKRVPLLENLGFTVISEDTFEIKM 577
GP SL S+R N F ++ F +
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN-RFLPVAS-PFHSHL 431
Query: 578 LADDEEHLVVLYQMDLSPATIARFDLVDRRDALVEAFKY-IFHERVDNDSFNHLIMLTDL 636
L + + DL + F+ D + ++ D +DL
Sbjct: 432 LVPASDLINK----DLVKNNV-SFNAKD--------IQIPVYDTF---DG-------SDL 468
Query: 637 RVYEISVLRSYARYLRQASVTWSQ--NFIARVLSKNPTISQLLFSLFRYRFDP------- 687
RV S+ + + V W F A + +L F P
Sbjct: 469 RVLSGSISERIVDCIIRLPVKWETTTQFKA---------THIL------DFGPGGASGLG 513
Query: 688 SLSDQER-GENTKRIL-GEIDSALLKVPSLDDD 718
L+ + + G + I+ G +D + DDD
Sbjct: 514 VLTHRNKDGTGVRVIVAGTLDI------NPDDD 540
Score = 68.4 bits (167), Expect = 1e-11
Identities = 104/614 (16%), Positives = 182/614 (29%), Gaps = 241/614 (39%)
Query: 970 LLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRKVLSKGGMIISR 1029
L+ + + V++ ++P + + +F+ L G I +
Sbjct: 60 LVGKFLGYVSSL------VEPSKVGQFD--------QVLNLCLTEFENCYLE-GNDIHAL 104
Query: 1030 KEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRAPRENNADIGD 1089
A +L E + +K++ I YI A
Sbjct: 105 ---AAKLLQENDTTLVKTKEL----------------------IKNYITARIMAKRPFDK 139
Query: 1090 KGNNILRVTADKVRAKVI----GEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSD 1145
K N+ L + A+++ G+G ++ R +Y + D
Sbjct: 140 KSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLV-------------GD 186
Query: 1146 LEVNIKIALASAMRDGRLTLENRNKLLSSMTSEVVEL------VLR----------NNYL 1189
L I ++ L L T + ++ +L +YL
Sbjct: 187 L-----IKFSAET------LSE----LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 1190 QSLAISLESRK---GMAMMWNFAQLMKFLGKE-GALDRELE----HLPS---VV------ 1232
S+ IS G+ + ++ K LG G L L+ H S V
Sbjct: 232 LSIPISC----PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH--SQGLVTAVAIAE 285
Query: 1233 -----SFEERIREEVSL-----SRPEIAILLAYAKLKLSEQLL-DSTLIDD----PFFFS 1277
SF +R+ +++ R AY L +L DS +++ P S
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVR----CYEAYPNTSLPPSILEDS--LENNEGVP---S 336
Query: 1278 ILLSY--FPR-QLSELYSEDIMNHQL---RRAIVATVLANEIINKGGSCFVVSLAKETG- 1330
+LS + Q+ + + N L ++ ++ L N G VV +G
Sbjct: 337 PMLSISNLTQEQVQDYV--NKTNSHLPAGKQVEIS--LVN-----GAKNLVV-----SGP 382
Query: 1331 -SSTEDVIRSAVIAYAGYELESLWQEVDKLDNQISGELQNKI-YEEIRLIFINLTRLLIK 1388
S Y L ++ K SG Q++I + E +L F N R L
Sbjct: 383 PQSL-------------YGLNLTLRKA-KAP---SGLDQSRIPFSERKLKFSN--RFLP- 422
Query: 1389 NGKFIGDIGNAVKRLVTA-FH-----KLNSLLQE--------------KIPVEWLERFNN 1428
V + FH + L+ + +IPV ++
Sbjct: 423 ---------------VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV-----YD- 461
Query: 1429 WVTNLTNKG-----FPPDLADRIVRMQFLMVV--PDLIDISETCDTSLLVVLDMWSAISV 1481
T G +++RIV + V T +LD +
Sbjct: 462 -----TFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH------ILDFGPGGAS 510
Query: 1482 GLGVDRLLSVAHNV 1495
GLGV L N
Sbjct: 511 GLGV--L--THRNK 520
Score = 65.0 bits (158), Expect = 1e-10
Identities = 101/645 (15%), Positives = 176/645 (27%), Gaps = 300/645 (46%)
Query: 845 EAYKTYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTATFSDTANILAQEA 904
+ + L FE L+GND + + A + L +
Sbjct: 75 SKVGQFDQVLNLCLTEFE---------NCYLEGNDIHALAAK-----LLQENDTTLVK-T 119
Query: 905 KFWLDDAFASGGSMGYDHKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGD---MS 961
K + + AR KR F + S F G G+ ++
Sbjct: 120 KELIKNYIT---------------ARIM---AKRPFDKK---SNSALFRAVGEGNAQLVA 158
Query: 962 GDVF-GNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFD-------------- 1006
+F G G N++ F+E + L+
Sbjct: 159 --IFGGQG------------------------NTDDYFEELRDLYQTYHVLVGDLIKFSA 192
Query: 1007 ----SPSSSWQDFDRKVLSKGGMIIS---RKEKAVQLTPE-----AVAV----IGISKQI 1050
+ D + KV ++G I+ TP+ ++ + IG+ Q+
Sbjct: 193 ETLSELIRTTLDAE-KVFTQGLNILEWLENPSN----TPDKDYLLSIPISCPLIGVI-QL 246
Query: 1051 A-----------TPSE--------------IISAILMASVDLLW--FGGIGTYIRAPREN 1083
A TP E +++A+ +A D W F
Sbjct: 247 AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD-SWESF-----------FV 294
Query: 1084 NAD--------IGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAI 1135
+ IG VR +A SL I D++
Sbjct: 295 SVRKAITVLFFIG-------------VRC------------YEAYPNTSLPPS-ILEDSL 328
Query: 1136 DNSGGVNCSDLEVNIKIALASAM---RD-GRLTLENR----NKLLSSMTSEVVELVLRN- 1186
+N+ GV S M + + +++ N L + + VE+ L N
Sbjct: 329 ENNEGV-------------PSPMLSISNLTQEQVQDYVNKTNSHLPA--GKQVEISLVNG 373
Query: 1187 --NY--------LQSLAISLESRKGMAMMWNFAQLMKFLGKEGALDRELEHLPSVVSFEE 1236
N L L ++L K LD+ S + F E
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAK----------------APSGLDQ------SRIPFSE 411
Query: 1237 RIREEVSLSRPEIA-----I-------LLAYAKLKLSEQLLDSTLIDDPFFFSILLSYFP 1284
R + + + + LL A +++ L+ + + + + P
Sbjct: 412 R--------KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA---KDIQ--IP 458
Query: 1285 -------RQLSELYSEDIMNHQLRRAIV--------ATVL-ANEIIN--KGGSCFVVSLA 1326
L S I ++ I+ T A I++ GG+ + L
Sbjct: 459 VYDTFDGSDLRV-LSGSIS-ERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLT 516
Query: 1327 ---KE-TGSSTEDVIRSAVIAYAGYELESLWQEVDKLDNQISGEL 1367
K+ TG +R VI AG LD +
Sbjct: 517 HRNKDGTG------VR--VIV-AG-----------TLDINPDDDY 541
Score = 62.7 bits (152), Expect = 7e-10
Identities = 96/625 (15%), Positives = 165/625 (26%), Gaps = 278/625 (44%)
Query: 328 ASKIPLLREKIVKVQNLLNFHPNSHSSRMLQNTLEFYPRDELFQID-STLLASFCEQIID 386
+ L+ + + V +L+ ++L L + L D L A Q D
Sbjct: 55 TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKL-LQEND 113
Query: 387 IMDRPRVRVLPRIDRFNHFFSSLIYIPREY--------FDSFVREKI---------GN-- 427
++ + + ++ I R + F + GN
Sbjct: 114 TTLVKTKELI-KN-----YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 428 -YLSEVCEGHVAFYSSILEEGLVRIHFVIVRSGGEISHPSQESLEEGVRSIVACWEDKFY 486
Y E+ + + Y ++ + +++ E L E +R+
Sbjct: 168 DYFEELRDLY-QTYHVLVGD--------LIKFSAET-------LSELIRT-----TLDAE 206
Query: 487 KSAGDGVPRFIFSQTFRDVFS----PEKAVEDLPYIISCAEGKEKLRVCFENKED---GK 539
K +F+Q ++ P D Y++S + G
Sbjct: 207 K---------VFTQGL-NILEWLENPSN-TPDKDYLLSIP-------ISC-----PLIGV 243
Query: 540 VQIKIFHARGPFSLSKRV----P--LLENL-GFT----------VISEDTFEIKMLADDE 582
+Q+ A + ++ ++ P L L G T I+E D
Sbjct: 244 IQL----AH--YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE--------TDSW 289
Query: 583 EH--------LVVLY-----------QMDLSPATIARFDLVD---------------RRD 608
E + VL+ L P+ + D ++ ++
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE--DSLENNEGVPSPMLSISNLTQE 347
Query: 609 ALVEAFKYIFHERVDNDSFN-HLIMLTDLRVYEIS--------V-------LRSYARYLR 652
+ Y+ + N HL +V IS V L LR
Sbjct: 348 QVQ---DYV-------NKTNSHLP--AGKQVE-ISLVNGAKNLVVSGPPQSLYGLNLTLR 394
Query: 653 --QASVTWSQNFIARVLSKNPTISQLLFS----LFRYRFDP------S--LSDQERGENT 698
+A Q+ R+ P FS F RF P S L +
Sbjct: 395 KAKAPSGLDQS---RI----P------FSERKLKFSNRFLPVASPFHSHLLVPA-----S 436
Query: 699 KRILG-------EIDSALLKVPSLDDDT--VLRSY--------VNLISGTLRTNYFQKNQ 741
I ++ +++P D LR V+ I L +
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII-RLPVKW----- 490
Query: 742 DDIALVFKFDSRKINSVGTDELHREIFVYGVEVEGVHLRCGKIARGGLRWSDRAADYRTE 801
+ FK T H I +G GG S
Sbjct: 491 -ETTTQFK---------AT---H--ILDFG--------------PGGA--SG-------- 511
Query: 802 VLG-LVRAQK----VKNAVIVPVGA 821
LG L K V+ VIV G
Sbjct: 512 -LGVLTHRNKDGTGVR--VIV-AGT 532
Score = 60.3 bits (146), Expect = 4e-09
Identities = 90/633 (14%), Positives = 163/633 (25%), Gaps = 307/633 (48%)
Query: 159 EEAIEIKKQLIFIIEQLKLVSQDSREMLASLEKMQKSFCH---LTGIKEYAVEALTFLNW 215
E + + FI QL+ + + L + + F T E + L +++
Sbjct: 17 EHVLLVPTASFFIASQLQ----E--QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSS 70
Query: 216 LNEDN---------------FQ--FM-GMRYHPLVAGQKQVKLDHDMPTELGILRDSSIV 257
L E + F+ ++ G H L A KL + T +++ ++
Sbjct: 71 LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAA-----KLLQENDTT--LVKTKELI 123
Query: 258 VLGFDRVTPATRSFPEGNDFLIITKSNVISVIYRRTYMDHIGI-----------KHFDE- 305
A R F + ++ S ++R + + +F+E
Sbjct: 124 KNYITARIMAKRPFDKKSN----------SALFRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
Query: 306 RGNLIGELHVV--GFFTRLVYS------------QRASKI-------------------- 331
R +L+ L+ A K+
Sbjct: 174 R-----DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 332 ----------PLLREKIVKVQ--------NLLNFHP---NS-------HSSRMLQ----- 358
PL I +Q LL F P S HS Q
Sbjct: 229 DYLLSIPISCPL----IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS----QGLVTA 280
Query: 359 ------NTLE-FYPRDE--------LFQI---------DSTLLASFCEQIID-------- 386
++ E F+ LF I +++L S E ++
Sbjct: 281 VAIAETDSWESFF---VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337
Query: 387 ---IMDRPRVRVLPRIDRFNHFFSSLIYIPREYFDSFVREKIGNYLSEVCEGHVAFYSSI 443
I + + +V +++ N ++P +++ ++
Sbjct: 338 MLSISNLTQEQVQDYVNKTNS------HLPAG-------KQV----------EIS----- 369
Query: 444 LEEGLV--RIHFVIVRSGGEISHPSQESLEEGVRSIVACWEDKFYKSAGDGVPRFIFSQT 501
LV + V+ SG P SL Y G + T
Sbjct: 370 ----LVNGAKNLVV--SG----PPQ--SL---------------Y---G-------LNLT 392
Query: 502 FRDVFSPEKAVEDLPYIISCAEGKEKLRVCFENKEDGKVQIKIFHARGPFSLSKRVPLLE 561
R KA G Q +I PF S+R
Sbjct: 393 LRKA----KA------------------------PSGLDQSRI-----PF--SERKLKFS 417
Query: 562 NLGFTVIS--------EDTFEIKMLADDEEHLVVLYQMDLSPATIARFDLVDRRD----- 608
N F ++ + + D ++ V D+ I +D D D
Sbjct: 418 N-RFLPVASPFHSHLLVPASD-LINKDLVKNNVSFNAKDIQ---IPVYDTFDGSDLRVLS 472
Query: 609 -----ALVEAFKYIFHERVD-----NDSFNHLI 631
+V+ I V H++
Sbjct: 473 GSISERIVDC---IIRLPVKWETTTQFKATHIL 502
Score = 43.0 bits (101), Expect = 5e-04
Identities = 64/318 (20%), Positives = 120/318 (37%), Gaps = 89/318 (27%)
Query: 918 MGYDHKKMGITARGAWETVKRHFRE------MDIDIQSTP--FTVAGVGDMSGDVFGN-- 967
MG D K A+ W HF++ +DI I + P T+ G+ + N
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINN-PVNLTIHFGGEKGKRIRENYS 1689
Query: 968 GMLLSRKIQLVAAFDHSDIFIDPDPNSET-TFDERKRL-----FDSPS------SSWQDF 1015
M+ + IF + + +S + TF K L F P+ ++++D
Sbjct: 1690 AMIFETIVD--GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDL 1747
Query: 1016 DRKVLSKGGMIISRKEKAVQLTPEAVAVIGIS----KQIATPSEIISAILMASVDLLWFG 1071
SKG L P G S +A+ ++++S + + V+++++
Sbjct: 1748 K----SKG------------LIPADATFAGHSLGEYAALASLADVMS--IESLVEVVFYR 1789
Query: 1072 GIGTYIRAPRENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQA-RVVYSLNGGR- 1129
G+ + PR+ ++G ++ + +V A +Q+A + V G R
Sbjct: 1790 GMTMQVAVPRD---ELGRSNYGMIAINPGRVAAS---------FSQEALQYVVERVGKRT 1837
Query: 1130 ------INSDAIDNSGGVNCSDLEVNIKIALASAMRDGRLTLENRNKLLSSMTSEVVELV 1183
+N + ++N V DL AL D T+ N + +++E
Sbjct: 1838 GWLVEIVNYN-VENQQYVAAGDLR-----AL-----D---TVTNVLNFIKLQKIDIIE-- 1881
Query: 1184 LRNNYLQSLAISLESRKG 1201
LQ ++SLE +G
Sbjct: 1882 -----LQK-SLSLEEVEG 1893
Score = 39.5 bits (92), Expect = 0.006
Identities = 57/372 (15%), Positives = 102/372 (27%), Gaps = 135/372 (36%)
Query: 1243 SLSRPEIAILLAYAKLKLSEQLLDSTLIDDPFFFSILLSYFPRQLSELYSEDIMNHQLRR 1302
S RP + L++ L+ +L+ P + S QL+
Sbjct: 5 ST-RP---LTLSHGSLE----------------HVLLV---PTASFFIAS------QLQ- 34
Query: 1303 AIVATVLANEIINKGGSCFVVSLAKETGSSTEDVIRSAVIAYAGYELESLWQEVDKLDNQ 1362
F L + T D + G L + V+
Sbjct: 35 ----------------EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVG 78
Query: 1363 ISGELQNKIYEEIRLIF-----IN--LTRLLIKNGKFIGDIGNAVKRLVTAFHKLNSLLQ 1415
++ N E + I+ +LL +N + K L+ + + +
Sbjct: 79 QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV----KTKELIKNYITARIMAK 134
Query: 1416 EKIPVEW----LER------------F------NNWVTNL-----TNKGFPPDLADRIVR 1448
+ L R F +++ L T + + D I
Sbjct: 135 RPFD-KKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT---YHVLVGDLIKF 190
Query: 1449 M----QFLMVVPDL--------IDI------SETC-DTSLLVVLDMWSA-ISVGL-GVDR 1487
L+ ++I D L+ S IS L G
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL-----SIPISCPLIG--- 242
Query: 1488 LLSVAHNVVVDDHYENLALSAG-LDWMYSARREMIVKAITTGSS----VATIM-QNEKWK 1541
++ +AH VV + L + G L R + K TG S A + + + W+
Sbjct: 243 VIQLAHYVVT---AKLLGFTPGEL-------RSYL-KG-ATGHSQGLVTAVAIAETDSWE 290
Query: 1542 EVKDQVFDILSV 1553
V ++V
Sbjct: 291 SFFVSVRKAITV 302
Score = 31.8 bits (72), Expect = 1.1
Identities = 38/129 (29%), Positives = 54/129 (41%), Gaps = 34/129 (26%)
Query: 702 LGEIDSALLKVPSLDDDTVLRSYVNLI--SG-TL----------RTNY--FQKNQDDIAL 746
LGE +AL SL D + S V ++ G T+ R+NY N +A
Sbjct: 1764 LGEY-AAL---ASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAA 1819
Query: 747 VFKFDSRK--INSVG--TDELHREIFVYGVEVEGVHLRCGKIARGGLRWSDRAADYRTEV 802
F ++ + + VG T L EI Y VE + +A G LR A D T V
Sbjct: 1820 SFSQEALQYVVERVGKRTGWL-VEIVNYNVENQQY------VAAGDLR----ALDTVTNV 1868
Query: 803 LGLVRAQKV 811
L ++ QK+
Sbjct: 1869 LNFIKLQKI 1877
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition,
oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB:
3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A
1hwx_A* 1hwy_A* 1hwz_A*
Length = 501
Score = 52.9 bits (126), Expect = 5e-07
Identities = 58/368 (15%), Positives = 94/368 (25%), Gaps = 77/368 (20%)
Query: 785 ARGGLRWSDRAADYRTEVLGLVRAQKVKNAVI-VPV-GAKGG--FYPKRLPSEGRRDEII 840
+GG+R+S + EV L K AV+ VP GAK G PK
Sbjct: 89 CKGGIRYSTDVS--VDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITR 146
Query: 841 KIGREAYKTYVRALLSITDNFEGQEIIHPDNTVCLDGND-PYFVVAADKGTATFSDTANI 899
+ E K G + P + + + + A+
Sbjct: 147 RFTMELAKKGFI----------GPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHA 196
Query: 900 LAQEAKFWLDDAFASGGSMGYDHKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGD 959
+ G E M F V G G+
Sbjct: 197 CVTGKPISQGGIHGRISATGRGV--FHGIENFINEASYMSILGMTPGFGDKTFVVQGFGN 254
Query: 960 MSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRKV 1019
+ L + + + +PD ++
Sbjct: 255 VGL--HSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELED------------------- 293
Query: 1020 LSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRA 1079
+ + P+A G +IL D+L
Sbjct: 294 -------FKLQHGTILGFPKAKIYEG-------------SILEVDCDILIPAASE----- 328
Query: 1080 PRENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSG 1139
+ + A +V+AK+I EGAN T +A ++ + D N+G
Sbjct: 329 ------------KQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAG 376
Query: 1140 GVNCSDLE 1147
GV S E
Sbjct: 377 GVTVSYFE 384
>1hwx_A GDH, glutamate dehydrogenase; allostery, abortive complex,
oxidoreductase; HET: GLU GTP NAI; 2.50A {Bos taurus}
SCOP: c.2.1.7 c.58.1.1 PDB: 1hwy_A* 1hwz_A* 3etd_A*
3ete_A* 3etg_A* 1l1f_A 1nr7_A 1nqt_A 1nr1_A
Length = 501
Score = 52.8 bits (126), Expect = 6e-07
Identities = 55/367 (14%), Positives = 86/367 (23%), Gaps = 75/367 (20%)
Query: 785 ARGGLRWSDRAADYRTEVLGLVRAQKVKNAVI-VPV-GAKGG--FYPKRLPSEGRRDEII 840
+GG+R+S + EV L K AV+ VP GAK G PK +++
Sbjct: 89 CKGGIRYSTDVS--VDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNY----TDEDLE 142
Query: 841 KIGREAYKTYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTATFSDTANIL 900
KI R + + D Y +
Sbjct: 143 KITRRFTMELAKKGFIGPGVDVPAPNMSTGEREMSWIADTYASTIGHYDINAHACVTGKP 202
Query: 901 AQEAKFWLDDAFASGGSMGYDHKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDM 960
+ + G M F V G G++
Sbjct: 203 ISQGGIHGRISATGRGVFHG-------IENFIENASYMSILGMTPGFGDKTFAVQGFGNV 255
Query: 961 SGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRKVL 1020
K E +P
Sbjct: 256 GLHSMRYLHRFGAKCV--------------------AVGESDGSIWNPDGIDPKELEDFK 295
Query: 1021 SKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRAP 1080
+ G I+ + + + I A
Sbjct: 296 LQHGTILGFPKAKI-----------------------------YEGSILEVDCDILIPAA 326
Query: 1081 RENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGG 1140
E + + A +V+AK+I EGAN T QA ++ + D N+GG
Sbjct: 327 SEKQ---------LTKSNAPRVKAKIIAEGANGPTTPQADKIFLERNIMVIPDLYLNAGG 377
Query: 1141 VNCSDLE 1147
V S +
Sbjct: 378 VTVSYFQ 384
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase;
2.30A {Bacillus subtilis} PDB: 3k8z_A
Length = 424
Score = 49.7 bits (118), Expect = 5e-06
Identities = 51/368 (13%), Positives = 103/368 (27%), Gaps = 90/368 (24%)
Query: 785 ARGGLRWSDRAADYRTEVLGLVRAQKVKNAVI-VPV-GAKGG--FYPKRLPSEGRRDEII 840
+GG+R+ + +V L +K + +P G KGG P+ +
Sbjct: 79 TKGGVRFHPEVNE--EKVKALSIWMTLKCGIANLPYGGGKGGIICDPRTMSFGELERLSR 136
Query: 841 KIGREAYKTYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTATFSDTANIL 900
R I D P + + + +
Sbjct: 137 GYVRA---------------------ISQIVGPTKDIPAPDVYTNSQIMAWMMDEYSRLR 175
Query: 901 AQEAKFWLD-DAFASGGSMGYDHKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGD 959
++ ++ GGS G + TA+G ++ ++ I +Q+ + G G+
Sbjct: 176 EFDSPGFITGKPLVLGGSQGRE----TATAQGVTICIEEAVKKKGIKLQNARIIIQGFGN 231
Query: 960 MSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRKV 1019
+ + +++ D +
Sbjct: 232 AGSFL--AKFMHDAGAKVIGISDAN----------------------------------- 254
Query: 1020 LSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRA 1079
G + + + + G+ + T +L D+L I I A
Sbjct: 255 ----GGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVITNEELLEKDCDILVPAAISNQITA 310
Query: 1080 PRENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSG 1139
A ++A ++ E AN T A + + G + D + ++G
Sbjct: 311 K-----------------NAHNIQASIVVERANGPTTIDATKILNERGVLLVPDILASAG 353
Query: 1140 GVNCSDLE 1147
GV S E
Sbjct: 354 GVTVSYFE 361
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET:
NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7
c.58.1.1
Length = 421
Score = 44.4 bits (104), Expect = 2e-04
Identities = 56/366 (15%), Positives = 109/366 (29%), Gaps = 79/366 (21%)
Query: 785 ARGGLRWSDRAADYRTEVLGLVRAQKVKNAVI-VPVG-AKGGF-YPKRLPSEGRRDEIIK 841
+GG+R+ + + L +KN++ +P G AKG + S+ +E+
Sbjct: 68 YKGGVRFHPEVT--LADDVALAILMTLKNSLAGLPYGGAKGAVRVDPKKLSQRELEELS- 124
Query: 842 IGREAYKTYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTATFSDTANILA 901
R G + P V + ++V +
Sbjct: 125 ----------RGYARAIAPLIGDVVDIPAPDVGTNAQIMAWMVDEYSKIKGY-------- 166
Query: 902 QEAKFWLDDAFASGGSMGYDHKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMS 961
+ + + + T G + +++ I+ + G+G++
Sbjct: 167 ----NVPGVFTSKPPELWGNPVREYATGFGVAVATREMAKKLWGGIEGKTVAIQGMGNVG 222
Query: 962 GDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRKVLS 1021
+ K+ V+ + +
Sbjct: 223 RWTAYWLEKMGAKVIAVSDINGVAYRKE-------------------------------- 250
Query: 1022 KGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRAPR 1081
G+ + +K LT A+ + +K A + AI VD+ I
Sbjct: 251 --GLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIFKLDVDIFVPAAI------EN 302
Query: 1082 ENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGV 1141
D A V+A+++ EGAN T +A + G + D + N+GGV
Sbjct: 303 VIRGD-----------NAGLVKARLVVEGANGPTTPEAERILYERGVVVVPDILANAGGV 351
Query: 1142 NCSDLE 1147
S LE
Sbjct: 352 IMSYLE 357
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A
{Pyrococcus furiosus dsm 3638} SCOP: c.2.1.7 c.58.1.1
PDB: 1bvu_A 1euz_A
Length = 419
Score = 40.8 bits (95), Expect = 0.002
Identities = 42/211 (19%), Positives = 75/211 (35%), Gaps = 26/211 (12%)
Query: 785 ARGGLRWSDRAADYRTEVLGLVRAQKVKNAVI-VPV-GAKGGFYPKRLPSEGRRDEIIKI 842
+GG+RW + V L K AV+ +P G KGG P + E ++
Sbjct: 67 TKGGIRWHPEET--LSTVKALAAWMTWKTAVMDLPYGGGKGGI--IVDPKKLSDREKERL 122
Query: 843 GREAYKTYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTATFSDTANILAQ 902
R Y+RA+ ++I P + V + A D +++
Sbjct: 123 ARG----YIRAI---------YDVISPYEDIPAPD-----VYTNPQIMAWMMDEYETISR 164
Query: 903 EAKFWLDDAFASGGSMGYDHKKMGITARGAWETVKRHFREMDID-IQSTPFTVAGVGDMS 961
S+G ++ TARGA T++ + + D ++ + G G+
Sbjct: 165 RKTPAFGIITGKPLSIGGSLGRIEATARGASYTIREAAKVLGWDTLKGKTIAIQGYGNAG 224
Query: 962 GDVFGNGMLLSRKIQLVAAFDHSDIFIDPDP 992
+ M +++VA D +PD
Sbjct: 225 YYL-AKIMSEDFGMKVVAVSDSKGGIYNPDG 254
Score = 35.4 bits (81), Expect = 0.096
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 1079 APRENNADI---GDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAI 1135
E D+ I + AD ++AK++ E AN +T +A + G D +
Sbjct: 283 ELLELEVDVLAPAAIEEVITKKNADNIKAKIVAEVANGPVTPEADEILFEKGILQIPDFL 342
Query: 1136 DNSGGVNCSDLE 1147
N+GGV S E
Sbjct: 343 CNAGGVTVSYFE 354
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 39.4 bits (91), Expect = 0.006
Identities = 139/707 (19%), Positives = 230/707 (32%), Gaps = 241/707 (34%)
Query: 133 LYSPESCGIAQKQISLIQIHCLKITPEEAIEIKKQLIFIIEQLKLVSQDSREMLASLEKM 192
L +PE + QK +P A ++ L F+ E LK + R+ L ++
Sbjct: 709 LLTPEVVELCQK------------SPVMA-DLNGGLQFVPE-LKEFTAKLRKELVETSEV 754
Query: 193 QKSFCHLTGIKEYAVEALTFLNWLNEDNFQFMGMRYHPLVAGQ---------KQVKLDHD 243
+K+ T ++ V N + + + P Q KQVK
Sbjct: 755 RKAVSIETALEHKVVNG-------NSADAAYAQVEIQPRANIQLDFPELKPYKQVK--QI 805
Query: 244 MPTEL-GILR-DSSIVVLGFDRVTP--ATRSFPEGNDFLIITKSNVISVIYRRTYMDHIG 299
P EL G+L + IVV GF V P + R+ E F + + + + ++ +
Sbjct: 806 APAELEGLLDLERVIVVTGFAEVGPWGSARTRWEMEAFGEFSLEGCVEMAWIMGFISY-- 863
Query: 300 IKHFDERGNLIGELHVVGFFTRLVYSQRASKIPLLREKIVKVQ----------------N 343
GNL G +T V S+ +K P+ +K VK +
Sbjct: 864 -----HNGNLKGRP-----YTGWVDSK--TKEPV-DDKDVKAKYETSILEHSGIRLIEPE 910
Query: 344 LLNFHPNSHSSRMLQNTLEFYPRD-ELFQIDSTLLASFCEQ---IIDIMDRPR-----VR 394
L N + N M+Q + D E F+ F Q +DI + P V+
Sbjct: 911 LFNGY-NPEKKEMIQEVI--VEEDLEPFEASKETAEQFKHQHGDKVDIFEIPETGEYSVK 967
Query: 395 VL-------PRIDRFNHFFSSLI------------------------YIPREYFDSFVRE 423
+L P+ RF+ + I ++ ++F+
Sbjct: 968 LLKGATLYIPKALRFDRLVAGQIPTGWNAKTYGISDDIISQVDPITLFVLVSVVEAFIAS 1027
Query: 424 KIGN--------YLSEV--CEGH----VA--------------FYSSILEEGLVR----- 450
I + ++SEV C G V+ + IL+E +
Sbjct: 1028 GITDPYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFKDEPVQNDILQESFINTMSAW 1087
Query: 451 IHFVIVRSGGEISHP------SQESLEEGVRSIVACWEDKFYKSAGDGVPRFIFSQTFRD 504
++ +++ S G I P S ES++ GV +I++ G R + D
Sbjct: 1088 VNMLLISSSGPIKTPVGACATSVESVDIGVETILS------------GKARICIVGGYDD 1135
Query: 505 VFSPEKAVEDLPYIISCAEGKEKLRVCFENKEDGKVQIKIF-HARGPFSLSKRVPLLEN- 562
F E + E F N + ++ F H R P +S+ N
Sbjct: 1136 -FQEEGSFE------------------FGNMKATSNTLEEFEHGRTPAEMSRPATTTRNG 1176
Query: 563 ------LGFTVISEDTFEIKM------------LADD------------------EEHLV 586
G +I + +KM A D E H
Sbjct: 1177 FMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSS 1236
Query: 587 VLYQMDLSPATIARF---DLVDRRDAL-------VEAFKYIFHERVDNDSFNHLIMLTDL 636
V Y SP ++ LV R + +EA K + E + ++ N ++
Sbjct: 1237 VKYA---SPNLNMKYRKRQLVTREAQIKDWVENELEALK-LEAEEIPSEDQNEFLLE--- 1289
Query: 637 RVYEISVLRSYARYLRQASVTWSQNFIARVLSKNPTISQLLFSLFRY 683
R EI LR A W +F R +P I+ L +L Y
Sbjct: 1290 RTREIH--NEAESQLRAAQQQWGNDFYKR----DPRIAPLRGALATY 1330
Score = 37.1 bits (85), Expect = 0.033
Identities = 81/344 (23%), Positives = 129/344 (37%), Gaps = 86/344 (25%)
Query: 1171 LLSSMTSEVVELVLRNNYLQSLAISLESRKGMAMMWNFAQLMKFLGKEGALDRELEHLPS 1230
LL +T EVVEL ++ + L G+ + +L +F K L +EL
Sbjct: 706 LLGLLTPEVVELCQKSPVMADL------NGGLQFV---PELKEFTAK---LRKELVETSE 753
Query: 1231 V---VSFEERIREEVSLSRPEIAILLAYAKLKLSEQL---LDSTLIDDPFFFSILLSYFP 1284
V VS E + +V A AYA++++ + LD F L Y
Sbjct: 754 VRKAVSIETALEHKVVNGNSADA---AYAQVEIQPRANIQLD---------FPELKPYKQ 801
Query: 1285 -RQLSELYSEDIMNHQLRRAIVATVLANEIINKGGSCFVVSLAKETGS-STEDVIRSA-V 1341
+Q++ E +++ L R IV T A + GS + G S E + A +
Sbjct: 802 VKQIAPAELEGLLD--LERVIVVTGFAE--VGPWGSARTRWEMEAFGEFSLEGCVEMAWI 857
Query: 1342 IAYAGYELESL-------W------QEVDKLDNQISGELQNKIYEE--IRLIFINLTRLL 1386
+ + Y +L W + VD D + + + I E IRLI L
Sbjct: 858 MGFISYHNGNLKGRPYTGWVDSKTKEPVD--DKDVKAKYETSILEHSGIRLIEPELF--- 912
Query: 1387 IKNGKFIGDIGNAVKRLVTAFHKLNSLLQEKIPVEWLERFNNWVTNLTNKGFPPDLADRI 1446
NG N K+ ++QE I E LE F + T + F D++
Sbjct: 913 --NGY------NPEKK---------EMIQEVIVEEDLEPFE--ASKETAEQFKHQHGDKV 953
Query: 1447 VRMQFLMVVPDLIDISETCDTSLLVVLDMWSAISVGLGVDRLLS 1490
D+ +I ET + S+ ++ I L DRL++
Sbjct: 954 ----------DIFEIPETGEYSVKLLKGATLYIPKALRFDRLVA 987
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant,
oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7
c.58.1.1 PDB: 1b26_A 1b3b_A
Length = 415
Score = 37.8 bits (87), Expect = 0.017
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 1090 KGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEVN 1149
I A++++AK + EGAN T +A + S G + D + N+GGV S E
Sbjct: 294 LEGAIHAGNAERIKAKAVVEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWV 353
Query: 1150 IKIALASAMRDGRLTLENRNKLLSSMTS 1177
+ D + RN L M
Sbjct: 354 QDLQSFFWDLD-----QVRNALEKMMKG 376
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.4 bits (80), Expect = 0.11
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 13/37 (35%)
Query: 159 EEAIEIKKQLIFIIEQ--LKLVSQDSREML---ASLE 190
++A+ K+L Q LKL + DS L A++E
Sbjct: 19 KQAL---KKL-----QASLKLYADDSAPALAIKATME 47
Score = 32.7 bits (73), Expect = 0.74
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 16/43 (37%)
Query: 336 EKIVKVQNLLNFHPNSHSSRMLQNTLEFYPRDE--LFQIDSTL 376
EK Q L + LQ +L+ Y D I +T+
Sbjct: 18 EK----QAL----------KKLQASLKLYADDSAPALAIKATM 46
Score = 30.4 bits (67), Expect = 3.3
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 9/26 (34%)
Query: 188 SLEKMQKSFCHLTGIKEYA---VEAL 210
+L+K+Q S +K YA AL
Sbjct: 21 ALKKLQAS------LKLYADDSAPAL 40
>2hjn_A MPS1 binder 1, maintenance of ploidy protein MOB1; homodimer, cell
cycle; 2.00A {Saccharomyces cerevisiae}
Length = 236
Score = 31.8 bits (72), Expect = 1.3
Identities = 15/61 (24%), Positives = 19/61 (31%), Gaps = 4/61 (6%)
Query: 268 TRSFPE--GNDFLIITKSNVISVIYRRTY--MDHIGIKHFDERGNLIGELHVVGFFTRLV 323
FP F VI I RR + HI HF+E L + + F
Sbjct: 150 ESLFPSKVTGTFPEGFIQRVIQPILRRLFRVYAHIYCHHFNEILELNLQTVLNTSFRHFC 209
Query: 324 Y 324
Sbjct: 210 L 210
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 31.3 bits (70), Expect = 1.6
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 785 ARGGLRW--SDRAADYRTEVLGLVRAQKVKNAVI-VPV-GAKGG 824
A GG R AD T+ L A +K AV +P+ G K
Sbjct: 37 AAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPMGGGKSV 80
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine
oxidase, flavoenzyme, oxidoreductase; HET: FAD NAD FMN;
2.15A {Corynebacterium SP} PDB: 1vrq_C*
Length = 206
Score = 30.9 bits (69), Expect = 2.1
Identities = 6/48 (12%), Positives = 12/48 (25%)
Query: 607 RDALVEAFKYIFHERVDNDSFNHLIMLTDLRVYEISVLRSYARYLRQA 654
D F + L+ T + + I S+ +
Sbjct: 139 ADLHPREFGVNRAITTSLANIPVLLWRTGEQSWRILPRASFTEHTVHW 186
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1;
transhydrogenase domain I, oxidoreductase; 1.81A
{Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB:
1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A*
2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Length = 384
Score = 30.8 bits (69), Expect = 2.6
Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 18/68 (26%)
Query: 1279 LLSYFPRQLSELYSEDIMNHQLRRAIVATVLANEIINKGGSCFVVSLAKETGSSTEDVIR 1338
+ S S L++++++N ++K V+ L E +
Sbjct: 323 VPSRVAADASPLFAKNLLN-----------FLTPHVDKDTKTLVMKLEDE-------TVS 364
Query: 1339 SAVIAYAG 1346
+ G
Sbjct: 365 GTCVTRDG 372
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 30.1 bits (66), Expect = 3.7
Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 7/93 (7%)
Query: 174 QLKLVSQDSREMLASLEKMQKSFCHLTGIKEYAVEALTFLNWLNEDNFQFMGMRYHPLVA 233
+L +S + +L ++ + IK L L+ + + V
Sbjct: 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143
Query: 234 GQKQVKLDHD-------MPTELGILRDSSIVVL 259
+ +L EL I +SS+ L
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKL 176
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis,
oligomer organization, oxidoreductase; 2.7A {Plasmodium
falciparum}
Length = 470
Score = 30.1 bits (67), Expect = 4.0
Identities = 54/365 (14%), Positives = 100/365 (27%), Gaps = 73/365 (20%)
Query: 785 ARGGLRWSDRAADYRTEVLGLVRAQKVKNAV--IVPVGAKGGFYPKRLPSEGRRDEIIKI 842
+GGLR+ + + V L Q KN++ + G KGG
Sbjct: 111 YKGGLRFHP--SVNLSIVKFLGFEQIFKNSLTGLSMGGGKGG---------------SDF 153
Query: 843 GREAYKTYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTATFSDTANILAQ 902
+ +L F + H + D G +
Sbjct: 154 DPKGKSD--NEILKFCQAFMNELYRHIGPCTDVPAGD------IGVGGREIGYLYGQYKK 205
Query: 903 EAKFWLDDAFASGGSMGYDHKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSG 962
+ G + ++ T G V + ++I ++ V+G G+++
Sbjct: 206 IVNSFNGTLTGKNVKWGGSNLRVEATGYGLVYFVLEVLKSLNIPVEKQTAVVSGSGNVAL 265
Query: 963 DVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRKVLSK 1022
+ L+ K+ + + D + V
Sbjct: 266 YCVQKLLHLNVKV----------LTLS------------------------DSNGYVYEP 291
Query: 1023 GGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRAPRE 1082
G E + L E I ++ ++ V + P
Sbjct: 292 NGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYFPNEKPWGVP--------CTLAFPCA 343
Query: 1083 NNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVN 1142
D+ +L+ ++GEGAN+ T A ++ N N+GGV
Sbjct: 344 TQNDVDLDQAKLLQKNG----CILVGEGANMPSTVDAINLFKSNNIIYCPSKAANAGGVA 399
Query: 1143 CSDLE 1147
S LE
Sbjct: 400 ISGLE 404
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D*
3a5d_D
Length = 464
Score = 29.7 bits (66), Expect = 4.9
Identities = 18/122 (14%), Positives = 38/122 (31%), Gaps = 12/122 (9%)
Query: 1437 GFPPDLADRIVRMQFLMVVPDLIDISETCDTSLLVVLDMWSAISVGLGVDRLLSVAHN-V 1495
G+P + + + V + S T L + D + D + +
Sbjct: 282 GYPGYMYTDLATIYERAGVVEGKKGSVTQIPILSMPDDDRTHPIP----DLTGYITEGQI 337
Query: 1496 VVDDHYENLALSAGLDWMYSARREMIVKAITTGSSVATIMQNEKWKEVKDQVFDILSVEK 1555
+ + +D + S R M + V E K+V DQ++ +
Sbjct: 338 QLSRELHRKGIYPPIDPLPSLSRLM-------NNGVGKGKTREDHKQVSDQLYSAYANGV 390
Query: 1556 EV 1557
++
Sbjct: 391 DI 392
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase, structural genomics; 1.90A
{Anabaena variabilis atcc 29413}
Length = 279
Score = 29.6 bits (65), Expect = 5.0
Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 552 SLSKRVPLLENLGFTVISEDTFEIKMLADDEEHLVVLYQMDLSPATIARFDLVDRRDALV 611
S+ + V +LE GF V F + E + + + A + D++ L+
Sbjct: 189 SIGEYVNILEKQGFDVTYAALFNRPTTLAEGEFGMANWIQMFASAFLVGLT-PDQQVQLI 247
Query: 612 EAFKYIFHERVDND 625
+ +++ +
Sbjct: 248 RKVEATLQDKLYHQ 261
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 family member A;
phosphorylation, nuclear protein, leucine-rich repeat,
LRR, LANP, phapi, ANP32A; 2.4A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 29.3 bits (64), Expect = 7.3
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 16/66 (24%)
Query: 1160 DGRLTLENRNKLLSSMTSEVVELVLRNNYLQSLAI--------SLE----SRKGMAMMWN 1207
R+ LE RN+ S+V ELVL N+ + LE G+ + N
Sbjct: 4 GRRIHLELRNRT----PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN 59
Query: 1208 FAQLMK 1213
+L K
Sbjct: 60 LPKLNK 65
>1xfi_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT2G17340, center for eukaryotic structural
genomics; 1.70A {Arabidopsis thaliana} SCOP: e.50.1.1
PDB: 2q40_A
Length = 367
Score = 29.1 bits (65), Expect = 9.1
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 11/83 (13%)
Query: 1236 ERIREE-VSLSRPEIAILLAYAKLKLSEQLLDSTLIDDPFFF------SILLSYFPRQLS 1288
E ++++ S P ILL +L EQ+L D F + +S FP+ +S
Sbjct: 85 EDLKKDPESHGGPPDGILL----CRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVS 140
Query: 1289 ELYSEDIMNHQLRRAIVATVLAN 1311
+ + +L + N
Sbjct: 141 LSDAIEDDGKRLENLVRGIFAGN 163
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR
{Methanocaldococcus jannaschii} SCOP: a.130.1.3
Length = 104
Score = 29.1 bits (65), Expect = 9.2
Identities = 10/104 (9%), Positives = 32/104 (30%), Gaps = 20/104 (19%)
Query: 1348 ELESLWQEVDKLDNQISGELQNKIYEEIRLIFINLTRLLIKNGKFIGDIGNAVKRLVTAF 1407
+L + +++D++DN+I ++ + +L+ + D+
Sbjct: 4 KLAEIRKKIDEIDNKI-----------LKARWPWAEKLIAERNSLAKDVAEI-------- 44
Query: 1408 HKLNSLLQEKIPVEWLERFNNWVTNLTNKGFPPDLADRIVRMQF 1451
K + P ++ ++ +I +
Sbjct: 45 -KNQLGIPINDPEREKYIYDRIRKLCKEHNVDENIGIKIFQRLI 87
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine
nucleotide exchange factor, alternative splicing, cell
projection, coiled coil; 2.10A {Mus musculus} PDB:
3a8q_A
Length = 263
Score = 29.0 bits (64), Expect = 9.5
Identities = 10/64 (15%), Positives = 22/64 (34%)
Query: 639 YEISVLRSYARYLRQASVTWSQNFIARVLSKNPTISQLLFSLFRYRFDPSLSDQERGENT 698
++ +R Y L+ + ++ +A + L L F + ++
Sbjct: 193 MDLFRMRCYLASLQGGELPNPKSLLAATSRPSKLALGRLGVLSVSSFHALVCSRDDSTLR 252
Query: 699 KRIL 702
KR L
Sbjct: 253 KRTL 256
>3okz_A Putative uncharacterized protein GBS0355; structural genomics,
PSI-2, protein structure initiative, no structural
genomics consortium; 2.70A {Streptococcus agalactiae}
Length = 306
Score = 28.8 bits (64), Expect = 10.0
Identities = 14/78 (17%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 681 FRYRFDPSLSDQERGENTKRILGEIDSALLKVPSLDDDTVLRSYVNLISGTLRTNYFQKN 740
R R+D D R + + ++ ++ +L + S+ + + ++ +S ++TN +
Sbjct: 169 SRMRYDDPEGDYGRQKRQREVIQKVLKKILALNSI---SSYKKILSAVSNNMQTNIEISS 225
Query: 741 QDDIALV-FKFDSRKINS 757
+ L+ +K I S
Sbjct: 226 KTIPNLLAYKDSLEHIKS 243
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.138 0.397
Gapped
Lambda K H
0.267 0.0562 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 13,752,509
Number of extensions: 679393
Number of successful extensions: 1912
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1893
Number of HSP's successfully gapped: 47
Length of query: 1576
Length of database: 5,693,230
Length adjustment: 105
Effective length of query: 1471
Effective length of database: 3,147,610
Effective search space: 4630134310
Effective search space used: 4630134310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.4 bits)