HHsearch alignment for GI: 254780663 and conserved domain: cd00883
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=0 Score=354.78 Aligned_cols=174 Identities=33% Similarity=0.606 Sum_probs=149.2
Q ss_pred HHHHHHCCC--CHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 999970687--988999862389975999962678998888517886624888624223457777753025788877672
Q gi|254780663|r 12 HREFIQDQY--DKKLFQELANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSAAIEFAV 89 (207)
Q Consensus 12 N~~f~~~~~--~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fv~RnaGn~v~~~~~~~~~~~~~~sle~av 89 (207)
T Consensus 1 n~~~~~~~~~~~~~~~~~La~gQ~P~a~vi~CsDSRv~pe~ifd~~~GdlFvvRn~gNiv~~~d-----~~~~aslEyAv 75 (182)
T cd00883 1 NRAWAEEKKAKDPDFFPRLAKGQTPEYLWIGCSDSRVPENTILGLLPGEVFVHRNIANLVSPTD-----LNCLSVLQYAV 75 (182)
T ss_pred CHHHHHHHHHHCHHHHHHHHCCCCCCEEEEEECCCCCCHHHHCCCCCCCEEEEEECCCCCCCCC-----CHHHHHHHHHH
T ss_conf 9768877876498999998578999669998647898999980999976799973245067777-----40899999998
Q ss_pred HCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH----HHHHC-CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 205766899981585389887530000134633101468988889999----86401-6324687999999999999973
Q gi|254780663|r 90 QGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQ----KIVAN-NPTEKQTILEQLSIRNSLKNIR 164 (207)
Q Consensus 90 ~~l~v~~iiV~GHt~CGav~aa~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~l~~~nV~~~v~~L~ 164 (207)
T Consensus 76 ~~L~v~~IVVlGHs~CGav~Aa~~~~~~-----~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~NV~~qv~~L~ 150 (182)
T cd00883 76 DVLKVKHIIVCGHYGCGGVKAALTGKRL-----GLLDNWLRPIRDVYRLHAAELDALEDEEERVDRLVELNVVEQVKNLC 150 (182)
T ss_pred HCCCCCEEEEECCCCCHHHHHHHCCCCC-----CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7078877999558885789998638776-----50678999999999988987625599899999999999999999996
Q ss_pred CCHHHHHHHHCC-CCEEEEEEEECCCCEEEEE
Q ss_conf 097889999779-9679999998898769998
Q gi|254780663|r 165 NFPFVNKLEKEH-MLQIHGAWFDISSGKLWIL 195 (207)
Q Consensus 165 ~~p~i~~~v~~g-~l~I~G~~yDi~tG~v~~l 195 (207)
T Consensus 151 ~~p~i~~~~~~~~~l~I~G~~Ydi~tG~v~~L 182 (182)
T cd00883 151 KTPIVQDAWKRGQELEVHGWVYDLGDGLLRDL 182 (182)
T ss_pred CCHHHHHHHHCCCCEEEEEEEEECCCCEEEEC
T ss_conf 09899999986994199999998698268739