Query gi|254780663|ref|YP_003065076.1| carbonate dehydratase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 207 No_of_seqs 125 out of 2127 Neff 7.8 Searched_HMMs 33803 Date Wed Jun 1 15:25:34 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780663.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1ym3_A Carbonic anhydrase (ca 100.0 0 0 345.9 18.7 193 3-204 16-214 (215) 2 >1ekj_A Beta-carbonic anhydras 100.0 0 0 330.8 19.5 172 33-205 1-176 (178) 3 >3eyx_A Carbonic anhydrase; ro 100.0 0 0 324.1 18.0 169 29-203 2-177 (178) 4 >1i6p_A Carbonic anhydrase; me 100.0 0 0 322.5 17.9 173 26-204 1-174 (194) 5 >3e3i_A Carbonic anhydrase 2, 100.0 0 0 318.8 17.2 171 28-204 1-172 (201) 6 >1ddz_A Carbonic anhydrase; al 100.0 1.4E-45 0 316.3 16.7 166 34-205 1-168 (254) 7 >2w3q_A Carbonic anhydrase 2; 100.0 1.4E-44 0 309.1 17.4 167 33-205 1-173 (180) 8 >1ylk_A Hypothetical protein R 100.0 3.9E-40 1.1E-44 280.3 8.4 139 31-197 2-140 (140) 9 >1g5c_A Beta-carbonic anhydras 100.0 1.8E-39 5.2E-44 276.0 8.0 149 29-199 2-152 (152) 10 >1ddz_A Carbonic anhydrase; al 100.0 6.9E-29 2.1E-33 207.2 19.1 182 7-198 38-227 (242) 11 >2hwk_A Helicase NSP2; rossman 78.4 1.9 5.7E-05 22.6 3.0 36 159-200 4-40 (49) 12 >3gcf_A Terminal oxygenase com 51.8 7.2 0.00021 18.9 1.6 15 181-195 13-27 (37) 13 >1gxu_A Hydrogenase maturation 50.1 7.1 0.00021 18.9 1.3 27 177-203 32-58 (91) 14 >2bjd_A Acylphosphatase; hyper 49.3 15 0.00044 16.8 2.8 19 177-195 39-57 (101) 15 >1ctt_A Cytidine deaminase; hy 47.0 19 0.00055 16.2 4.2 66 52-117 42-112 (121) 16 >3d89_A Rieske domain-containi 46.8 9.6 0.00028 18.0 1.6 26 179-204 21-48 (57) 17 >1wm1_A Proline iminopeptidase 46.7 19 0.00056 16.1 4.1 82 32-113 36-123 (209) 18 >2fhm_A Probable acylphosphata 44.0 20 0.00059 16.0 2.8 19 177-195 27-45 (91) 19 >2hu5_A Acylamino-acid-releasi 43.7 21 0.00062 15.8 3.5 36 78-113 118-153 (280) 20 >1fqt_A Rieske-type ferredoxin 42.8 7.2 0.00021 18.9 0.4 17 179-195 52-68 (72) 21 >2z72_A Protein-tyrosine-phosp 42.6 16 0.00047 16.6 2.2 31 82-113 72-102 (113) 22 >3dqy_A Toluene 1,2-dioxygenas 42.2 7.5 0.00022 18.8 0.4 16 179-194 51-66 (71) 23 >2qpz_A Naphthalene 1,2-dioxyg 40.4 6.9 0.0002 19.0 0.0 17 179-195 51-67 (71) 24 >1urr_A CG18505 protein; acylp 40.1 21 0.00062 15.8 2.5 19 177-195 36-54 (102) 25 >2de6_D Ferredoxin component o 39.8 7.7 0.00023 18.7 0.2 17 179-195 17-33 (37) 26 >2de6_A Terminal oxygenase com 39.6 13 0.00037 17.3 1.3 20 178-197 90-109 (147) 27 >2vh7_A Acylphosphatase-1; hyd 37.6 26 0.00077 15.2 2.8 22 177-198 33-55 (99) 28 >2i7f_A Ferredoxin component o 37.4 5.3 0.00016 19.7 -0.9 16 179-194 17-32 (38) 29 >2fuk_A XC6422 protein; A/B hy 37.2 26 0.00078 15.2 4.0 52 62-113 77-129 (220) 30 >1w2i_A Acylphosphatase; hydro 35.5 28 0.00082 15.1 2.5 19 177-195 29-47 (91) 31 >2e87_A Hypothetical protein P 35.2 19 0.00055 16.2 1.6 10 35-44 7-16 (195) 32 >2c78_A Elongation factor TU-A 34.1 15 0.00046 16.7 1.0 58 34-99 75-133 (215) 33 >1aps_A Acylphosphatase; hydro 33.5 26 0.00077 15.2 2.1 19 177-195 32-50 (98) 34 >2rdo_7 EF-G, elongation facto 32.9 17 0.0005 16.5 1.0 49 48-106 97-147 (289) 35 >1ulr_A Putative acylphosphata 32.1 32 0.00094 14.7 2.8 19 177-195 27-45 (88) 36 >2q0x_A Protein DUF1749, uncha 31.3 33 0.00097 14.6 3.1 83 30-112 35-125 (335) 37 >2vtv_A PHB depolymerase PHAZ7 31.2 33 0.00097 14.6 3.1 35 79-113 98-132 (281) 38 >1j1i_A META cleavage compound 30.6 34 0.001 14.5 3.6 84 30-113 33-124 (296) 39 >1ega_A Protein (GTP-binding p 30.5 17 0.00051 16.4 0.7 13 94-106 8-20 (181) 40 >2ojh_A Uncharacterized protei 30.5 34 0.001 14.5 2.8 29 176-204 18-46 (99) 41 >1zo1_I IF2, translation initi 30.4 21 0.00061 15.9 1.1 24 83-106 93-116 (170) 42 >2gv1_A Probable acylphosphata 29.9 19 0.00057 16.1 0.9 19 177-195 29-47 (92) 43 >2wj6_A 1H-3-hydroxy-4-oxoquin 29.1 36 0.0011 14.3 3.9 81 31-112 25-110 (207) 44 >2hf9_A Probable hydrogenase n 28.8 25 0.00074 15.3 1.3 16 31-46 36-51 (226) 45 >1zo0_A ODC-AZ, ornithine deca 28.6 36 0.0011 14.3 2.2 69 40-113 23-95 (126) 46 >3bdi_A Uncharacterized protei 28.2 37 0.0011 14.2 3.6 36 78-113 83-118 (207) 47 >1e8c_A UDP-N-acetylmuramoylal 28.1 23 0.00069 15.5 1.1 19 39-64 23-41 (90) 48 >2aiz_P Outer membrane protein 27.0 37 0.0011 14.3 1.9 31 77-107 44-74 (134) 49 >3a4m_A L-seryl-tRNA(SEC) kina 26.8 24 0.00072 15.4 1.0 15 93-107 3-17 (182) 50 >1z68_A Fibroblast activation 26.7 23 0.00068 15.6 0.8 17 181-197 34-50 (51) 51 >3def_A T7I23.11 protein; chlo 26.4 26 0.00078 15.2 1.1 15 31-45 34-48 (262) 52 >2h5e_A Peptide chain release 25.9 27 0.00081 15.1 1.1 21 84-104 125-145 (207) 53 >2w3q_A Carbonic anhydrase 2; 25.8 41 0.0012 14.0 2.4 27 6-32 35-63 (63) 54 >3iby_A Ferrous iron transport 25.6 31 0.00093 14.7 1.4 11 96-106 3-13 (173) 55 >1znw_A Guanylate kinase, GMP 25.3 33 0.00098 14.6 1.4 20 89-108 15-34 (155) 56 >1zun_B Sulfate adenylate tran 24.8 30 0.00088 14.9 1.1 12 35-46 26-37 (238) 57 >2k1s_A Inner membrane lipopro 24.7 43 0.0013 13.8 2.9 29 79-107 50-78 (149) 58 >1orv_A Dipeptidyl peptidase I 24.4 27 0.0008 15.1 0.8 17 181-197 36-52 (53) 59 >1ukf_A Avirulence protein AVR 24.3 43 0.0013 13.8 3.4 27 181-207 132-158 (188) 60 >2hjg_A GTP-binding protein EN 24.2 34 0.001 14.5 1.3 15 93-107 2-16 (167) 61 >2hqs_H Peptidoglycan-associat 23.8 44 0.0013 13.7 3.7 33 75-107 18-50 (118) 62 >3a1s_A Iron(II) transport pro 23.6 28 0.00082 15.0 0.8 11 96-106 7-17 (173) 63 >1n0u_A EF-2, elongation facto 23.3 31 0.00093 14.7 1.0 66 32-107 96-164 (304) 64 >2r11_A Carboxylesterase NP; 2 23.2 46 0.0013 13.6 3.7 56 58-113 95-152 (306) 65 >2zf8_A MOTY, component of sod 22.8 46 0.0014 13.6 3.4 15 93-107 39-53 (124) 66 >1k1x_A 4-alpha-glucanotransfe 22.3 33 0.00098 14.5 1.0 86 95-191 4-91 (175) 67 >1dar_A EF-G, elongation facto 22.1 33 0.00098 14.6 0.9 65 33-107 76-143 (283) 68 >2hjg_A GTP-binding protein EN 22.0 36 0.0011 14.3 1.1 11 96-106 10-20 (186) 69 >2wji_A Ferrous iron transport 22.0 36 0.0011 14.3 1.1 12 95-106 4-15 (165) 70 >2qtf_A Protein HFLX, GTP-bind 21.9 40 0.0012 14.0 1.3 12 34-45 9-20 (193) 71 >1kez_A Erythronolide synthase 21.6 49 0.0014 13.5 3.5 36 78-113 117-152 (300) 72 >3kb5_A Tripartite motif-conta 21.4 49 0.0015 13.4 4.3 24 177-200 132-155 (193) 73 >2dy1_A Elongation factor G; t 21.3 38 0.0011 14.1 1.1 13 36-48 102-114 (277) 74 >3b60_A Lipid A export ATP-bin 21.3 43 0.0013 13.8 1.4 106 90-198 34-161 (181) 75 >3iev_A GTP-binding protein ER 20.5 35 0.001 14.4 0.8 25 82-106 111-135 (204) 76 >2gj8_A MNME, tRNA modificatio 20.4 43 0.0013 13.8 1.2 14 94-107 4-17 (172) 77 >1gg4_A UDP-N-acetylmuramoylal 20.3 40 0.0012 14.0 1.1 20 39-65 26-45 (81) 78 >1tq4_A IIGP1, interferon-indu 20.1 45 0.0013 13.7 1.3 62 34-105 52-119 (197) 79 >1l2t_A Hypothetical ABC trans 20.0 44 0.0013 13.7 1.2 16 92-107 29-44 (235) No 1 >>1ym3_A Carbonic anhydrase (carbonate dehydratase) (carbonic dehydratase); Zn protein, structural proteomics in europe, spine; 1.75A {Mycobacterium tuberculosis H37RV} PDB: 2a5v_A (A:) Probab=100.00 E-value=0 Score=345.86 Aligned_cols=193 Identities=28% Similarity=0.421 Sum_probs=170.2 Q ss_pred HHHHHHHHHHHHHHHCCC-----CHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCC Q ss_conf 469999999999970687-----988999862389975999962678998888517886624888624223457777753 Q gi|254780663|r 3 SFPNTLLERHREFIQDQY-----DKKLFQELANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQ 77 (207) Q Consensus 3 ~~~~~Ll~~N~~f~~~~~-----~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fv~RnaGn~v~~~~~~~~ 77 (207) +-+++|++||++|++++. .+++|+.|++||+|+++||||||||++||.+||++|||+||+||+||+| T Consensus 16 ~~l~~ll~gN~~f~~~~~~~~~~~~~~~~~l~~gq~P~~~vi~CsDsRv~pe~i~~~~~GdlfvvRn~Gn~v-------- 87 (215) T 1ym3_A 16 AAWKALKEGNERFVAGRPQHPSQSVDHRAGLAAGQKPTAVIFGCADSRVAAEIIFDQGLGDMFVVRTAGHVI-------- 87 (215) T ss_dssp HHHHHHHHHHHHHHHTCCSSGGGC----------CCCSEEEEEETTCSSCHHHHTTCCTTSEEEEEEGGGCC-------- T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCEEEEEECCCCC-------- T ss_conf 999999999999983975685438899987415899836999405778787773389987468983043446-------- Q ss_pred CHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 02578887767220576689998158538988753000013463310146898888999986401632468799999999 Q gi|254780663|r 78 HHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPTEKQTILEQLSIR 157 (207) Q Consensus 78 ~~~~~~sle~av~~l~v~~iiV~GHt~CGav~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nV~ 157 (207) +.++++|||||+.+|+|++|||||||+||||+++++..........+...+....++... .....+.+..+.++++||+ T Consensus 88 ~~~~~asieyav~~L~v~~IvV~GHt~CGav~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~NV~ 166 (215) T 1ym3_A 88 DSAVLGSIEYAVTVLNVPLIVVLGHDSCGAVNAALAAINDGTLPGGYVRDVVERVAPSVL-LGRRDGLSRVDEFEQRHVH 166 (215) T ss_dssp CHHHHHHHHHHHHTSCCCEEEEEEESSCHHHHHHHHHHHHTSCCSTTHHHHHHHHHHHHH-HHHHTTCCSHHHHHHHHHH T ss_pred CHHHHEEEEEEEECCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHH T ss_conf 843401568864127867899976865068887651012456763226799998605555-3201432243279999999 Q ss_pred HHHHHHHCC-HHHHHHHHCCCCEEEEEEEECCCCEEEEEECCCCEEEE Q ss_conf 999997309-78899997799679999998898769998468882583 Q gi|254780663|r 158 NSLKNIRNF-PFVNKLEKEHMLQIHGAWFDISSGKLWILDPTSNEFTC 204 (207) Q Consensus 158 ~~v~~L~~~-p~i~~~v~~g~l~I~G~~yDi~tG~v~~l~~~~~~F~~ 204 (207) .|+++|+++ |++++++++|+|.||||+||++||+|++|+.+++.|+. T Consensus 167 ~~v~~l~~~~~~~~~~~~~g~l~I~G~~ydi~tG~v~~l~~~~~~~~~ 214 (215) T 1ym3_A 167 ETVAILMARSSAISERIAGGSLAIVGVTYQLDDGRAVLRDHIGNIGEE 214 (215) T ss_dssp HHHHHHHHHCHHHHHHHHHTSCEEEEEEECTTTCCCEEEEEESCCSCC T ss_pred HHHHHHHHCCHHHHHHHHCCCCEEEEEEEECCCEEEEEEECCCCCCCC T ss_conf 999999746999999998898389999998787079999889865882 No 2 >>1ekj_A Beta-carbonic anhydrase; rossman fold domain, strand exchange, lyase; HET: CIT; 1.93A {Pisum sativum} (A:44-221) Probab=100.00 E-value=0 Score=330.82 Aligned_cols=172 Identities=37% Similarity=0.620 Sum_probs=159.0 Q ss_pred CCEEEEEECCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHH Q ss_conf 97599996267899888851788662488862422345777775302578887767220576689998158538988753 Q gi|254780663|r 33 KPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVL 112 (207) Q Consensus 33 ~P~~~vitC~DsRv~~~~i~~~~~Gd~fv~RnaGn~v~~~~~~~~~~~~~~sle~av~~l~v~~iiV~GHt~CGav~aa~ 112 (207) +|+++||||||||++|+.+||++|||+||+||+||+|||+... .+.++++|||||+.+|++++|+|||||+|||+++++ T Consensus 1 ~P~~~~i~C~DsRv~p~~i~~~~~GdlfvvRN~GN~V~~~~~~-~~~~~~asleyAv~~l~v~~IvV~GHt~Cgav~aa~ 79 (178) T 1ekj_A 1 SPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANLVPPYDQA-KYAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLL 79 (178) T ss_dssp CCSEEEEEECCGGGCHHHHSCCCTTSEEEEEEGGGCCCCSCTT-TCHHHHHHHHHHHHTSCCSEEEEEEESSCHHHHHHH T ss_pred CCCEEEEEECCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCC-CCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH T ss_conf 9987999405889898998099998689987157753876566-651079999999986089779996588871677766 Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEEEECC Q ss_conf 000013463310146898888999986401----6324687999999999999973097889999779967999999889 Q gi|254780663|r 113 DSNNSSTSPGDFIGKWMDIVRPIAQKIVAN----NPTEKQTILEQLSIRNSLKNIRNFPFVNKLEKEHMLQIHGAWFDIS 188 (207) Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~nV~~~v~~L~~~p~i~~~v~~g~l~I~G~~yDi~ 188 (207) +.........++++.|+..++++....... ......+.++++||++|+++|++||+|++++++|++.|||||||++ T Consensus 80 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~i~~~~~~g~l~IhG~~ydi~ 159 (178) T 1ekj_A 80 SFPFDGTYSTDFIEEWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVNASLGNLLTYPFVREGLVNKTLALKGGYYDFV 159 (178) T ss_dssp HCCCSSCCCSSSHHHHHGGGHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHTTSCEEEEEEEETT T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCEEEEEEEEECC T ss_conf 54430476776289999988989999987626999899999999999999999997398899999869849999999888 Q ss_pred CCEEEEEECCCCEEEEC Q ss_conf 87699984688825833 Q gi|254780663|r 189 SGKLWILDPTSNEFTCD 205 (207) Q Consensus 189 tG~v~~l~~~~~~F~~~ 205 (207) ||+|++|+.+++.|+.. T Consensus 160 tG~v~~l~~~~~~~~~i 176 (178) T 1ekj_A 160 KGSFELWGLEFGLSSTF 176 (178) T ss_dssp TTEEEEEEECCCCCCCC T ss_pred CCEEEEEECCCCCCCCC T ss_conf 87799983246888777 No 3 >>3eyx_A Carbonic anhydrase; rossmann fold, cytoplasm, lyase, metal-binding, nucleus, zinc; 2.04A {Saccharomyces cerevisiae} (A:39-216) Probab=100.00 E-value=0 Score=324.06 Aligned_cols=169 Identities=27% Similarity=0.463 Sum_probs=151.6 Q ss_pred HCCCCCEEEEEECCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHH Q ss_conf 23899759999626789988885178866248886242234577777530257888776722057668999815853898 Q gi|254780663|r 29 ANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGGI 108 (207) Q Consensus 29 ~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fv~RnaGn~v~~~~~~~~~~~~~~sle~av~~l~v~~iiV~GHt~CGav 108 (207) ++||+|+++|||||||||| +.+||++|||+||+||+||+|+|. +.++++|||||+.+|++++|||||||+|||| T Consensus 2 a~gq~P~~~~i~C~DsRvp-e~i~~~~~GdlfvvRn~Gn~v~~~-----~~~~~~sleyav~~l~v~~IvV~GHt~CGav 75 (178) T 3eyx_A 2 AKGQSPHTLFIGCSDSRYN-ENCLGVLPGEVFTWKNVANICHSE-----DLTLKATLEFAIICLKVNKVIICGHTDCGGI 75 (178) T ss_dssp ----CCSEEEEEECCTTCC-GGGGCCCTTSEEEEEEGGGCCCTT-----CHHHHHHHHHHHHTTCCSEEEEEEESSCHHH T ss_pred HCCCCCCEEEEECCCCCCC-CCCCCCCCCCEEEEEEECCCCCCC-----CHHHHHHHHHHHCCCCCCEEEEECCCCHHHH T ss_conf 3689995489940477878-564799986556761024644887-----5325766464420278768999768617788 Q ss_pred HHHHHHHCCC--CCCCCCHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEE Q ss_conf 8753000013--463310146898888999986401-----632468799999999999997309788999977996799 Q gi|254780663|r 109 QAVLDSNNSS--TSPGDFIGKWMDIVRPIAQKIVAN-----NPTEKQTILEQLSIRNSLKNIRNFPFVNKLEKEHMLQIH 181 (207) Q Consensus 109 ~aa~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~nV~~~v~~L~~~p~i~~~v~~g~l~I~ 181 (207) +++++..... ....++++.|+..++++....... .+.++.+.++++||+.|+++|++||+|++++++|+|+|| T Consensus 76 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~NV~~qv~~L~~~p~i~~~~~~g~l~V~ 155 (178) T 3eyx_A 76 KTCLTNQREALPKVNCSHLYKYLDDIDTMYHEESQNLIHLKTQREKSHYLSHCNVKRQFNRIIENPTVQTAVQNGELQVY 155 (178) T ss_dssp HHHHTTCGGGTGGGTCHHHHHHTHHHHHHHHHTHHHHTTCCSHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHTTSCEEE T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCEEE T ss_conf 87775233057643442147799999999999887501347889999999999999999999759899999986980899 Q ss_pred EEEEECCCCEEEEEECCCCEEE Q ss_conf 9999889876999846888258 Q gi|254780663|r 182 GAWFDISSGKLWILDPTSNEFT 203 (207) Q Consensus 182 G~~yDi~tG~v~~l~~~~~~F~ 203 (207) ||+||++||+|++|+++.+.|+ T Consensus 156 G~~yDi~tG~v~~l~~~~~~~~ 177 (178) T 3eyx_A 156 GLLYNVEDGLLQTVSTYTKVTP 177 (178) T ss_dssp EEEECTTTCCEEEEEEECSSSC T ss_pred EEEEECCCCEEEEECCCCCCCC T ss_conf 9999889857999778888798 No 4 >>1i6p_A Carbonic anhydrase; metalloenzyme, zinc coordination, PH- dependent activity, MAD phasing, lyase; 2.00A {Escherichia coli} (A:27-220) Probab=100.00 E-value=0 Score=322.53 Aligned_cols=173 Identities=30% Similarity=0.465 Sum_probs=148.2 Q ss_pred HHHHCCCCCEEEEEECCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCH Q ss_conf 98623899759999626789988885178866248886242234577777530257888776722057668999815853 Q gi|254780663|r 26 QELANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRC 105 (207) Q Consensus 26 ~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fv~RnaGn~v~~~~~~~~~~~~~~sle~av~~l~v~~iiV~GHt~C 105 (207) ++|++||+|+++||||||||++|+.+||++|||+||+||+||+|++. +.++++|||||+.+|++++|||||||+| T Consensus 1 ~~l~~gq~P~~~vi~C~DsRv~p~~i~~~~~Gd~fv~Rn~Gn~v~~~-----d~~~~~sle~av~~l~v~~ivV~GHt~C 75 (194) T 1i6p_A 1 EKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHT-----DLNCLSVVQYAVDVLEVEHIIICGHYGC 75 (194) T ss_dssp HHHHSCCCCSEEEEEETTCSSCHHHHHCCCTTSEEEEEETTCCCCTT-----CHHHHHHHHHHHHTSCCSEEEEEEETTC T ss_pred HHHCCCCCCCEEEEEECCCCCCHHHHCCCCCCCEEEEECCCCCCCCC-----CCHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 98606899835999863889897884589986367761135656876-----5016899999998628846999279760 Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHH-HHHCCCCEEEEEE Q ss_conf 898875300001346331014689888899998640163246879999999999999730978899-9977996799999 Q gi|254780663|r 106 GGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPTEKQTILEQLSIRNSLKNIRNFPFVNK-LEKEHMLQIHGAW 184 (207) Q Consensus 106 Gav~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nV~~~v~~L~~~p~i~~-~v~~g~l~I~G~~ 184 (207) |||+++++....... ..+...+...............+.++.+.++++||+.|+++|+++|+|++ ++++|+|.||||+ T Consensus 76 Gav~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~NV~~qv~~L~~~p~v~~~~v~~g~l~V~G~~ 154 (194) T 1i6p_A 76 GGVQAAVENPELGLI-NNWLLHIRDIWFKHSSLLGEMPQERRLDTLCELNVMEQVYNLGHSTIMQSAWKRGQKVTIHGWA 154 (194) T ss_dssp HHHHHHHHCCCCSTH-HHHHHHHHHHHHHTHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHSHHHHHHHHTTCCCEEEEEE T ss_pred HHHHHHHHCCCCCCC-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCEEEEEE T ss_conf 354423321335530-4666665999999864113354678899999999999999987297989999819962899999 Q ss_pred EECCCCEEEEEECCCCEEEE Q ss_conf 98898769998468882583 Q gi|254780663|r 185 FDISSGKLWILDPTSNEFTC 204 (207) Q Consensus 185 yDi~tG~v~~l~~~~~~F~~ 204 (207) ||++||+|++|+..++.|+. T Consensus 155 yDi~tG~v~~l~~~~~~~~~ 174 (194) T 1i6p_A 155 YGIHDGLLRDLDVTATNRET 174 (194) T ss_dssp ECTTTCCEEECSCCBSSHHH T ss_pred EECCCCEEEEECCCCCCCCC T ss_conf 98898379984389997130 No 5 >>3e3i_A Carbonic anhydrase 2, beta carbonic anhydrase; allosteric site mutant, lyase, metal-binding, zinc; 2.00A {Haemophilus influenzae} PDB: 3e3g_A 2a8d_A 2a8c_A 3e3f_A 3e31_A 3e2x_A 3e2a_A 3e28_A 3e2w_A 3e1w_A 3e1v_A 3e24_A (A:29-229) Probab=100.00 E-value=0 Score=318.82 Aligned_cols=171 Identities=29% Similarity=0.489 Sum_probs=146.0 Q ss_pred HHCCCCCEEEEEECCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHH Q ss_conf 62389975999962678998888517886624888624223457777753025788877672205766899981585389 Q gi|254780663|r 28 LANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGG 107 (207) Q Consensus 28 l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fv~RnaGn~v~~~~~~~~~~~~~~sle~av~~l~v~~iiV~GHt~CGa 107 (207) |++||+|+++||||||||++|+.+||++|||+||+||+||+|+|. +.++++|||||+..|++++|||||||+||| T Consensus 1 L~~gQ~P~~~vitC~DsRv~pe~i~~~~~GdlfvvRNaGn~v~~~-----d~~~~~sleyAv~~l~v~~IvV~GHt~CGa 75 (201) T 3e3i_A 1 LADHQTPHYLWIACSDSRVPAEKLTNLEPGELFVHRNVANQVIHT-----DFNCLSVVQYAVDVLKIEHIIICGHTNCGG 75 (201) T ss_dssp -----CCCEEEEEETTCCSCHHHHHTCCTTSEEEEEETTCCCCTT-----CHHHHHHHHHHHHTSCCCEEEEEEESSCHH T ss_pred HCCCCCCCEEEEEECCCCCCHHHHCCCCCCCEEEEECCCCCCCCC-----CHHHHHHHHHEEEECCCCEEEEECCCCCCC T ss_conf 606899964999775779798886589986457774126778984-----344466412201316864699972677752 Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHH-HHHCCCCEEEEEEEE Q ss_conf 8875300001346331014689888899998640163246879999999999999730978899-997799679999998 Q gi|254780663|r 108 IQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPTEKQTILEQLSIRNSLKNIRNFPFVNK-LEKEHMLQIHGAWFD 186 (207) Q Consensus 108 v~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nV~~~v~~L~~~p~i~~-~v~~g~l~I~G~~yD 186 (207) |++++....... ...++..+....+............+..+.++++||++|+++|+++|+|++ ++.+|+|.||||+|| T Consensus 76 v~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~v~~~~~~~g~l~V~G~~yd 154 (201) T 3e3i_A 76 IHAAMADKDLGL-INNWLLHIRDIWFKHGHLLGKLSPEKRADMLTKINVAEQVYNLGRTSIVKSAWERGQKLSLHGWVYD 154 (201) T ss_dssp HHHHHSCCCCST-HHHHHHHHHHHHHHTHHHHHTBCGGGHHHHHHHHHHHHHHHHHHTSHHHHHHHHTTCCCEEEEEEEC T ss_pred HHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCEEEEEEEEE T ss_conf 022210344565-4247887889999877651034505678889999999999999729688899984993189999998 Q ss_pred CCCCEEEEEECCCCEEEE Q ss_conf 898769998468882583 Q gi|254780663|r 187 ISSGKLWILDPTSNEFTC 204 (207) Q Consensus 187 i~tG~v~~l~~~~~~F~~ 204 (207) ++||+|++++...+.|+. T Consensus 155 i~tG~v~~~~~~~~~~~~ 172 (201) T 3e3i_A 155 VNDGFLVDQGVMATSRET 172 (201) T ss_dssp TTTCCEEEEEEEESSHHH T ss_pred CCCCEEEECCCCCCCCHH T ss_conf 898479973688886102 No 6 >>1ddz_A Carbonic anhydrase; alpha-beta-alpha; 2.20A {Porphyridium cruentum} (A:67-320) Probab=100.00 E-value=1.4e-45 Score=316.28 Aligned_cols=166 Identities=27% Similarity=0.408 Sum_probs=142.8 Q ss_pred CEEEEEECCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH Q ss_conf 75999962678998888517886624888624223457777753025788877672205766899981585389887530 Q gi|254780663|r 34 PKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLD 113 (207) Q Consensus 34 P~~~vitC~DsRv~~~~i~~~~~Gd~fv~RnaGn~v~~~~~~~~~~~~~~sle~av~~l~v~~iiV~GHt~CGav~aa~~ 113 (207) |+++|||||||||+|+.+||++|||+||+||+||+|+|+ +.++++|||||+.+|+|++|||||||+||||+++++ T Consensus 1 P~~l~I~CsDSRV~pe~i~~~~pGdlFVvRNaGN~V~~~-----d~~~~asleyAV~~L~V~~IvV~GHt~CGav~a~~~ 75 (254) T 1ddz_A 1 PEYLWIGCADSRVPANQLLDLPAGEVFVHRNIANQCIHS-----DISFLSVLQYAVQYLKVKHILVCGHYGCGGAKAALG 75 (254) T ss_dssp CSEEEEEETTCSSCHHHHTTCCTTSEEEEEEGGGCCCTT-----CHHHHHHHHHHHHTSCCSEEEEEEETTCHHHHHHHH T ss_pred CCEEEEEECCCCCCHHHHCCCCCCCEEEEEECCCCCCCC-----CCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHC T ss_conf 976999877768898997099998679986058877876-----503789999999861886799936899842887640 Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHCCCCEEEEEEEECCCCE Q ss_conf 000134633101468988889999864016-32468799999999999997309788999-9779967999999889876 Q gi|254780663|r 114 SNNSSTSPGDFIGKWMDIVRPIAQKIVANN-PTEKQTILEQLSIRNSLKNIRNFPFVNKL-EKEHMLQIHGAWFDISSGK 191 (207) Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~nV~~~v~~L~~~p~i~~~-v~~g~l~I~G~~yDi~tG~ 191 (207) ..... ....++..|....++....+.... +.+..+.++++||+.|+++|+++|+|+++ +++|+|.||||+||++||+ T Consensus 76 ~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~NV~~qve~L~~~p~V~~~~~~~g~l~VhG~vYDi~tG~ 154 (254) T 1ddz_A 76 DSRLG-LIDNWLRHIRDVRRMNAKYLDKCKDGDEELNRLIELNVLEQVHNVCATSIVQDAWDAGQELTVQGVVYGVGDGK 154 (254) T ss_dssp CCCCT-HHHHHHHHHHHHHHHTHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHTTCCCEEEEEEECTTTTC T ss_pred CCCCC-HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCEEEEEEEEECCCCE T ss_conf 45443-37899998899999877643025887999999999999999999850988899997699408999999889716 Q ss_pred EEEEECCCCEEEEC Q ss_conf 99984688825833 Q gi|254780663|r 192 LWILDPTSNEFTCD 205 (207) Q Consensus 192 v~~l~~~~~~F~~~ 205 (207) |++|+...+.|+.. T Consensus 155 v~~l~~~~~~~~~l 168 (254) T 1ddz_A 155 LRDLGVVVNSSDDI 168 (254) T ss_dssp CEEEEEESCCCCCC T ss_pred EEECCCCCCCHHHH T ss_conf 99766877885787 No 7 >>2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A {Cryptococcus neoformans} PDB: 2w3n_A (A:64-243) Probab=100.00 E-value=1.4e-44 Score=309.11 Aligned_cols=167 Identities=28% Similarity=0.436 Sum_probs=152.5 Q ss_pred CCEEEEEECCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHH Q ss_conf 97599996267899888851788662488862422345777775302578887767220576689998158538988753 Q gi|254780663|r 33 KPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVL 112 (207) Q Consensus 33 ~P~~~vitC~DsRv~~~~i~~~~~Gd~fv~RnaGn~v~~~~~~~~~~~~~~sle~av~~l~v~~iiV~GHt~CGav~aa~ 112 (207) +|+++||||||||++|+.+||++|||+||+||+||+|+|. ++++++|||||+..|++++|+|||||+||||++++ T Consensus 1 sP~~~vi~C~DsRv~~e~i~~~~~GdlfviRn~Gn~v~~~-----~~~~~~sleyAv~~l~v~~IvV~GHt~CGav~a~~ 75 (180) T 2w3q_A 1 APNFLWIGCADSRVPEVTIMARKPGDVFVQRNVANQFKPE-----DDSSQALLNYAIMNVGVTHVMVVGHTGCGGCIAAF 75 (180) T ss_dssp CCSEEEEEECCTTCCHHHHTTCCTTSEEEEEEGGGCCCTT-----CHHHHHHHHHHHHTTCCCEEEEEEETTCHHHHHHH T ss_pred CCCEEEEEECCCCCCHHHHCCCCCCCEEEEECCCCCCCCC-----CCCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHH T ss_conf 9976999774879899997299997479996027713887-----78603667876554586579992587732899987 Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC------CCEEEEEEEE Q ss_conf 0000134633101468988889999864016324687999999999999973097889999779------9679999998 Q gi|254780663|r 113 DSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPTEKQTILEQLSIRNSLKNIRNFPFVNKLEKEH------MLQIHGAWFD 186 (207) Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nV~~~v~~L~~~p~i~~~v~~g------~l~I~G~~yD 186 (207) +...... ...++..|...+++...........+..+.++++||..|+++|++||+|++++++| +|+||||+|| T Consensus 76 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~i~~~~~~g~~~~~~~l~V~G~~yd 154 (180) T 2w3q_A 76 DQPLPTE-ENPGGTPLVRYLEPIIRLKHSLPEGSDVNDLIKENVKMAVKNVVNSPTIQGAWEQARKGEFREVFVHGWLYD 154 (180) T ss_dssp TCCCC------CCSHHHHHTHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSSCCCEEEEEEEE T ss_pred HCCCCCC-CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCEEEEEEEEE T ss_conf 3423444-477401689999999998733846778889999999999999970989999998533167883389999998 Q ss_pred CCCCEEEEEECCCCEEEEC Q ss_conf 8987699984688825833 Q gi|254780663|r 187 ISSGKLWILDPTSNEFTCD 205 (207) Q Consensus 187 i~tG~v~~l~~~~~~F~~~ 205 (207) ++||+|++++.+++.|+.. T Consensus 155 i~tG~v~~l~~~~~~~~~~ 173 (180) T 2w3q_A 155 LSTGNIVDLNVTQGPHPFV 173 (180) T ss_dssp TTTTEEEECSCCBCSCC-- T ss_pred CCCCEEEEECCCCCCCCCC T ss_conf 8996798847887888650 No 8 >>1ylk_A Hypothetical protein RV1284/MT1322; homodimer, alpha/beta-fold, structural proteomics in europe, spine, structural genomics; 2.00A {Mycobacterium tuberculosis H37RV} (A:33-172) Probab=100.00 E-value=3.9e-40 Score=280.26 Aligned_cols=139 Identities=24% Similarity=0.382 Sum_probs=119.6 Q ss_pred CCCCEEEEEECCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHH Q ss_conf 89975999962678998888517886624888624223457777753025788877672205766899981585389887 Q gi|254780663|r 31 QQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQA 110 (207) Q Consensus 31 ~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fv~RnaGn~v~~~~~~~~~~~~~~sle~av~~l~v~~iiV~GHt~CGav~a 110 (207) ||+|+++||||||||++|+.+||.+|||+|++||+||+|+ .+.++||+||+.+|++++|+|||||+|||+++ T Consensus 2 gq~p~~~vi~C~DsRv~~~~i~~~~~Gd~fv~Rn~Gn~v~--------~~~~~sle~av~~l~v~~IvV~GHt~Cg~~~~ 73 (140) T 1ylk_A 2 PPSKHIAIVACMDARLDVYRMLGIKEGEAHVIRNAGCVVT--------DDVIRSLAISQRLLGTREIILLHHTDCGMLTF 73 (140) T ss_dssp SCTTCEEEEEECCTTCCHHHHHTCCTTSEEEEEETTSCCC--------HHHHHHHHHHHHTTCCCEEEEEEESSCGGGSC T ss_pred CCCCCEEEEEECCCCCCHHHHHCCCCCCEEEEEEECCCCC--------HHHHCEEEEEEEECCCCEEEEEEECCCCCCCC T ss_conf 8898669999646675787874899975799985055588--------03310035403106986899997368886312 Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEEEECCCC Q ss_conf 53000013463310146898888999986401632468799999999999997309788999977996799999988987 Q gi|254780663|r 111 VLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPTEKQTILEQLSIRNSLKNIRNFPFVNKLEKEHMLQIHGAWFDISSG 190 (207) Q Consensus 111 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nV~~~v~~L~~~p~i~~~v~~g~l~I~G~~yDi~tG 190 (207) +.+....... ..........+..+.++++||++|+++|++||++++ +|+||||+||++|| T Consensus 74 ~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~e~nV~~qv~~L~~~p~v~~-----~l~I~G~~ydi~tG 133 (140) T 1ylk_A 74 TDDDFKRAIQ---------------DETGIRPTWSPESYPDAVEDVRQSLRRIEVNPFVTK-----HTSLRGFVFDVATG 133 (140) T ss_dssp CHHHHHHHHH---------------HHHSCCCSSCCCCCSCHHHHHHHHHHHHHTCTTCCC-----CSEEEEEEECTTTC T ss_pred CHHHHHHHHH---------------HHHCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-----CCEEEEEEEECCCC T ss_conf 4345543211---------------431368402221122689999999999972915256-----97899999988998 Q ss_pred EEEEEEC Q ss_conf 6999846 Q gi|254780663|r 191 KLWILDP 197 (207) Q Consensus 191 ~v~~l~~ 197 (207) +|++++| T Consensus 134 ~v~~l~p 140 (140) T 1ylk_A 134 KLNEVTP 140 (140) T ss_dssp CEEEECC T ss_pred EEEEECC T ss_conf 6988379 No 9 >>1g5c_A Beta-carbonic anhydrase; zinc, hepes, lyase; HET: EPE; 2.10A {Methanothermobacterthermautotrophicus} (A:19-170) Probab=100.00 E-value=1.8e-39 Score=275.99 Aligned_cols=149 Identities=23% Similarity=0.337 Sum_probs=122.7 Q ss_pred HCCCCCEEEEEECCCCCCCH--HHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHH Q ss_conf 23899759999626789988--8851788662488862422345777775302578887767220576689998158538 Q gi|254780663|r 29 ANQQKPKIMIISCCDSRVAP--ETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCG 106 (207) Q Consensus 29 ~~~q~P~~~vitC~DsRv~~--~~i~~~~~Gd~fv~RnaGn~v~~~~~~~~~~~~~~sle~av~~l~v~~iiV~GHt~CG 106 (207) ++||+|+++||||||||++| +.+||..|||+|++||+||+|+ .+.++||+||+..|++++|+|||||+|| T Consensus 2 ~~~q~p~~~vitC~DsRv~p~~e~i~~~~~Ge~fv~Rn~Gn~v~--------~~~~~sl~~av~~l~v~~IiV~gHt~Cg 73 (152) T 1g5c_A 2 DLKHSPKLCIITCMDSRLIDLLERALGIGRGDAKVIKNAGNIVD--------DGVIRSAAVAIYALGDNEIIIVGHTDCG 73 (152) T ss_dssp GSSSSCCEEEEEECCGGGTTHHHHHHTCCTTSCEEEEETTCCCC--------HHHHHHHHHHHHHHCCCEEEEEEESSCC T ss_pred CCCCCCCEEEEEEECCCCCCHHHHHHCCCCCCEEEEEECCCCCC--------HHHHHHHHHHHHHCCCCEEEEECCCCCC T ss_conf 26999967999886789981378883899963799850366798--------4578999999986499779996678888 Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEEEE Q ss_conf 98875300001346331014689888899998640163246879999999999999730978899997799679999998 Q gi|254780663|r 107 GIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPTEKQTILEQLSIRNSLKNIRNFPFVNKLEKEHMLQIHGAWFD 186 (207) Q Consensus 107 av~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nV~~~v~~L~~~p~i~~~v~~g~l~I~G~~yD 186 (207) |++++.+................... .......+.++++||++|+++|+++|+|++ ++.||||+|| T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~-----~i~v~G~~yd 139 (152) T 1g5c_A 74 MARLDEDLIVSRMRELGVEEEVIENF---------SIDVLNPVGDEEENVIEGVKRLKSSPLIPE-----SIGVHGLIID 139 (152) T ss_dssp TTSCCHHHHHHHHHHTTCCHHHHHHH---------HHHHTSSCCCHHHHHHHHHHHHHHCTTSCT-----TSEEEEEEEC T ss_pred EEEECHHHCCCCCCCCCCCHHHHHHH---------CHHHCCCHHHHHHHHHHHHHHHHCCCCHHC-----CCEEEEEEEE T ss_conf 06734100234222233138888640---------222206201399999999999970930320-----8789999998 Q ss_pred CCCCEEEEEECCC Q ss_conf 8987699984688 Q gi|254780663|r 187 ISSGKLWILDPTS 199 (207) Q Consensus 187 i~tG~v~~l~~~~ 199 (207) ++||+|+.++.+. T Consensus 140 i~tG~v~~~~~~~ 152 (152) T 1g5c_A 140 INTGRLKPLYLDE 152 (152) T ss_dssp TTTCCEEEEECCC T ss_pred CCCCEEEEECCCC T ss_conf 8996287717999 No 10 >>1ddz_A Carbonic anhydrase; alpha-beta-alpha; 2.20A {Porphyridium cruentum} (A:1-66,A:321-496) Probab=99.97 E-value=6.9e-29 Score=207.22 Aligned_cols=182 Identities=29% Similarity=0.499 Sum_probs=158.2 Q ss_pred HHHHHHHHHHHCC--CCHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHH Q ss_conf 9999999997068--79889998623899759999626789988885178866248886242234577777530257888 Q gi|254780663|r 7 TLLERHREFIQDQ--YDKKLFQELANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSAA 84 (207) Q Consensus 7 ~Ll~~N~~f~~~~--~~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fv~RnaGn~v~~~~~~~~~~~~~~s 84 (207) .+...|+.|.... ++|++|.+|+.||+|.++|++|.|||+|.+.|.++..||+|++||++|..-++ +.+.++. T Consensus 38 nifanneawrqemlkqdpeffnrlangqspeilwigcadsrvpanqiinlpagevfvhrnianqcihs-----dmsflsv 112 (242) T 1ddz_A 38 NIFANNEAWRQEMLKQDPEFFNRLANGQSPEILWIGCADSRVPANQIINLPAGEVFVHRNIANQCIHS-----DMSFLSV 112 (242) T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHTCCCCSEEEEEETTCSSCHHHHTTCCTTSEEEEEETTCCCCTT-----CHHHHHH T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCEEEEEECCCCCCHHHHCCCCCCCEEEEEECCCCCCCC-----CCCHHHH T ss_conf 99999999997524449799998637999976999853779899997199997679987358857887-----6422355 Q ss_pred HHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH-----HHCCCHHHHHHHHHHHHHHH Q ss_conf 7767220576689998158538988753000013463310146898888999986-----40163246879999999999 Q gi|254780663|r 85 IEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKI-----VANNPTEKQTILEQLSIRNS 159 (207) Q Consensus 85 le~av~~l~v~~iiV~GHt~CGav~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~nV~~~ 159 (207) +.||+..|+|+.++||||+.||++.++... ...+++++|+..++|..... .-.++.+..+.+.+.|+++| T Consensus 113 lqyavqylkvkrvvvcghYa~~~Ca~~lS~-----SAlgLIDnWlRHIRPIRr~~KRElS~ITDpkDsLdRLsqINvLqQ 187 (242) T 1ddz_A 113 LQYAVQYLKVKRVVVCGHYACGGCAAALGD-----SRLGLIDNWLRHIRDVRRHNQAELSRITDPKDSLNRLIEINVLEQ 187 (242) T ss_dssp HHHHHHTSCCSEEEEEEETTCHHHHHTTSC-----CCCTTHHHHTHHHHHHHHTTHHHHTTCCSHHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCEEEEECCCCCHHHHCCCCC-----CCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH T ss_conf 899998618977999089996777610205-----644517999999999999877653235887899999999999999 Q ss_pred HHHHHCCHHHHHHHHCCC-CEEEEEEEECCCCEEEEEECC Q ss_conf 999730978899997799-679999998898769998468 Q gi|254780663|r 160 LKNIRNFPFVNKLEKEHM-LQIHGAWFDISSGKLWILDPT 198 (207) Q Consensus 160 v~~L~~~p~i~~~v~~g~-l~I~G~~yDi~tG~v~~l~~~ 198 (207) ++++.++.+++++++.|+ |.|-|.+|-+.+|++.....- T Consensus 188 l~nVas~~~~qdawdagqelevqgvvygvgdgklrdmgvv 227 (242) T 1ddz_A 188 MHNVCATSIVQDAWDAGQELEVQGVVYGVGDGKLRDMGVV 227 (242) T ss_dssp HHHHHHSHHHHHHHHTTCCCEEEEEEECTTTTCCEEEEEE T ss_pred HHHHHCCHHHHHHHHCCCCCEEEEEEEECCCEEEEEEECC T ss_conf 9999739776799875995189999998898179997088 No 11 >>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} (A:92-140) Probab=78.38 E-value=1.9 Score=22.59 Aligned_cols=36 Identities=22% Similarity=0.478 Sum_probs=29.7 Q ss_pred HHHHH-HCCHHHHHHHHCCCCEEEEEEEECCCCEEEEEECCCC Q ss_conf 99997-3097889999779967999999889876999846888 Q gi|254780663|r 159 SLKNI-RNFPFVNKLEKEHMLQIHGAWFDISSGKLWILDPTSN 200 (207) Q Consensus 159 ~v~~L-~~~p~i~~~v~~g~l~I~G~~yDi~tG~v~~l~~~~~ 200 (207) .++.| +.||-|.++++.|+ ++|+.||.+..+++.-+ T Consensus 4 v~rqLarRYP~l~kAv~TGR------v~D~~t~tlr~Y~P~iN 40 (49) T 2hwk_A 4 VVRQLSRRYPQLPRAVATGR------VYDMNTGTLRNYDPRIN 40 (49) T ss_dssp HHHHHHTTCTTHHHHHHHTC------EECTTTSSEECCCTTSC T ss_pred HHHHHHHHCCHHHHHHCCCE------EEEECCCCCCCCCCCCC T ss_conf 99999886853233313773------89834784425886543 No 12 >>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans} (A:87-123) Probab=51.83 E-value=7.2 Score=18.87 Aligned_cols=15 Identities=33% Similarity=0.618 Sum_probs=13.9 Q ss_pred EEEEEECCCCEEEEE Q ss_conf 999998898769998 Q gi|254780663|r 181 HGAWFDISSGKLWIL 195 (207) Q Consensus 181 ~G~~yDi~tG~v~~l 195 (207) |||-|++++|+|... T Consensus 13 Hg~Tf~l~dG~L~~I 27 (37) T 3gcf_A 13 HGWTYDLDDGRLVDV 27 (37) T ss_dssp TCEEEETTTCBEEEE T ss_pred CCCEECCCCCCCCCC T ss_conf 898884887524457 No 13 >>1gxu_A Hydrogenase maturation protein HYPF; phosphatase, acylphosphatases, hydrogenase maturations, fibril formation, zinc-finger, complete proteome; 1.27A {Escherichia coli} (A:) Probab=50.09 E-value=7.1 Score=18.88 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=22.4 Q ss_pred CCEEEEEEEECCCCEEEEEECCCCEEE Q ss_conf 967999999889876999846888258 Q gi|254780663|r 177 MLQIHGAWFDISSGKLWILDPTSNEFT 203 (207) Q Consensus 177 ~l~I~G~~yDi~tG~v~~l~~~~~~F~ 203 (207) ++.|.||+.+..+|.+..+....+.|. T Consensus 32 ~~~l~G~V~N~~dGv~~~~~g~~~~~~ 58 (91) T 1gxu_A 32 QLNLHGDVCNDGDGVEVRLREDPEVFL 58 (91) T ss_dssp HHTCCEEEEECSSSEEEEESSCCHHHH T ss_pred HCCCEEEEEECCCCCEEEEECCHHHHH T ss_conf 859919999889997999987999999 No 14 >>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A (A:) Probab=49.28 E-value=15 Score=16.84 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=16.2 Q ss_pred CCEEEEEEEECCCCEEEEE Q ss_conf 9679999998898769998 Q gi|254780663|r 177 MLQIHGAWFDISSGKLWIL 195 (207) Q Consensus 177 ~l~I~G~~yDi~tG~v~~l 195 (207) ++.|.||+.+..+|.|+.+ T Consensus 39 ~lgl~G~V~N~~dG~Vei~ 57 (101) T 2bjd_A 39 RLGIKGYAKNLPDGSVEVV 57 (101) T ss_dssp HTTCEEEEEECTTSCEEEE T ss_pred HCCCEEEEEECCCCEEEEE T ss_conf 7498079999999989999 No 15 >>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} (A:174-294) Probab=47.05 E-value=19 Score=16.17 Aligned_cols=66 Identities=12% Similarity=0.005 Sum_probs=40.0 Q ss_pred HCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEC-----CCHHHHHHHHHHHCC Q ss_conf 178866248886242234577777530257888776722057668999815-----853898875300001 Q gi|254780663|r 52 FNAKPGELFVVRNVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGH-----GRCGGIQAVLDSNNS 117 (207) Q Consensus 52 ~~~~~Gd~fv~RnaGn~v~~~~~~~~~~~~~~sle~av~~l~v~~iiV~GH-----t~CGav~aa~~~~~~ 117 (207) .-..-|.+|.=.|+-|-.-+.....+..+....+..+-....++.|++... +-||+....+..... T Consensus 42 l~~~~G~iy~G~nvEna~~~~slcaE~~Ai~~a~~~g~~~~~i~~i~~~~~~~~~~sPCG~CRq~L~e~~~ 112 (121) T 1ctt_A 42 LECKDGRIFSGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKADAPLIQWDATSATLKALGC 112 (121) T ss_dssp EEETTSCEEEEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEEEEEEEECTTCSSCCHHHHHHHHHHHTC T ss_pred EEECCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCC T ss_conf 99589999998877505678875899999999997599846678999993799986818999999998577 No 16 >>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein structure initiative, PSI; 2.07A {Mus musculus} (A:61-117) Probab=46.85 E-value=9.6 Score=18.04 Aligned_cols=26 Identities=8% Similarity=-0.042 Sum_probs=18.6 Q ss_pred EEEEEEEECCCCEEEEEEC--CCCEEEE Q ss_conf 7999999889876999846--8882583 Q gi|254780663|r 179 QIHGAWFDISSGKLWILDP--TSNEFTC 204 (207) Q Consensus 179 ~I~G~~yDi~tG~v~~l~~--~~~~F~~ 204 (207) +.|||-||++||+...... .-..|.+ T Consensus 21 P~H~~~Fdl~tG~~~~~p~~~~l~~y~V 48 (57) T 3d89_A 21 PWHKYKITLATGEGLYQSINPKDPSAKP 48 (57) T ss_dssp TTTCCEEETTTCEEEEEECCCC-----C T ss_pred CCCCCEEECCCCCEEECCCCCCCCCCCC T ss_conf 8999789799968876376655556664 No 17 >>1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET: PTB; 2.10A {Serratia marcescens} (A:1-140,A:249-317) Probab=46.67 E-value=19 Score=16.13 Aligned_cols=82 Identities=15% Similarity=0.166 Sum_probs=49.7 Q ss_pred CCCEEEEE-ECCCCCCCHHHH--HCCCCCCEEEE--ECCCCCCCCCCC-CCCCHHHHHHHHHHHHCCCCCEEEEEECCCH Q ss_conf 99759999-626789988885--17886624888--624223457777-7530257888776722057668999815853 Q gi|254780663|r 32 QKPKIMII-SCCDSRVAPETI--FNAKPGELFVV--RNVANIVPPYEP-DGQHHATSAAIEFAVQGLNVEHIVVMGHGRC 105 (207) Q Consensus 32 q~P~~~vi-tC~DsRv~~~~i--~~~~~Gd~fv~--RnaGn~v~~~~~-~~~~~~~~~sle~av~~l~v~~iiV~GHt~C 105 (207) +.|.++++ +-..+....... |...--.++.+ |-.|.--++.+. ..........++.-...++++.++|+|||-. T Consensus 36 ~g~pvi~lHG~~g~~~~~~~~~~~~~~~~~Vi~~D~rG~G~S~~~~~~~~~~~~~lv~di~~i~~~l~i~~~~l~G~S~G 115 (209) T 1wm1_A 36 NGKPAVFIHGGPGGGISPHHRQLFDPERYKVLLFDQRGCGRSRPHASLDNNTTWHLVADIERLREMAGVEQWLVFGGSWG 115 (209) T ss_dssp TSEEEEEECCTTTCCCCGGGGGGSCTTTEEEEEECCTTSTTCBSTTCCTTCSHHHHHHHHHHHHHHTTCSSEEEEEETHH T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCC T ss_conf 99879998999987414466776521798899996898868887555544310223566887665307666167872354 Q ss_pred HHHHHHHH Q ss_conf 89887530 Q gi|254780663|r 106 GGIQAVLD 113 (207) Q Consensus 106 Gav~aa~~ 113 (207) |.+...+. T Consensus 116 g~ial~~A 123 (209) T 1wm1_A 116 STLALAYA 123 (209) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 46899999 No 18 >>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A (A:) Probab=43.99 E-value=20 Score=15.98 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=16.2 Q ss_pred CCEEEEEEEECCCCEEEEE Q ss_conf 9679999998898769998 Q gi|254780663|r 177 MLQIHGAWFDISSGKLWIL 195 (207) Q Consensus 177 ~l~I~G~~yDi~tG~v~~l 195 (207) ++.|.||+.+..+|.|+.+ T Consensus 27 ~~gl~G~V~N~~dg~Vei~ 45 (91) T 2fhm_A 27 KRKLAGWVKNRDDGRVEIL 45 (91) T ss_dssp HTTCEEEEEECTTSCEEEE T ss_pred HCCCCEEEEECCCCCEEEE T ss_conf 7398199999999989999 No 19 >>2hu5_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase, beta-propeller, enzyme-inhibitor complex; HET: PHE; 2.00A {Aeropyrum pernix} (A:1-22,A:325-582) Probab=43.67 E-value=21 Score=15.83 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=30.0 Q ss_pred CHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH Q ss_conf 025788877672205766899981585389887530 Q gi|254780663|r 78 HHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLD 113 (207) Q Consensus 78 ~~~~~~sle~av~~l~v~~iiV~GHt~CGav~aa~~ 113 (207) ..++.++++|......++.|.|+|||--|.+..... T Consensus 118 ~~D~~~~~~~l~~~~~~~ri~i~G~S~GG~~a~~~~ 153 (280) T 2hu5_A 118 LEDVSAAARWARESGLASELYIMGYSYGGYMTLCAL 153 (280) T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEETHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHH T ss_conf 355899999876347761798622466763222100 No 20 >>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxidoreductase; 1.60A {Burkholderia xenovorans LB400} (A:16-87) Probab=42.80 E-value=7.2 Score=18.85 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=13.5 Q ss_pred EEEEEEEECCCCEEEEE Q ss_conf 79999998898769998 Q gi|254780663|r 179 QIHGAWFDISSGKLWIL 195 (207) Q Consensus 179 ~I~G~~yDi~tG~v~~l 195 (207) +.|||.||+.||++..- T Consensus 52 p~Hg~~F~l~tG~~~~~ 68 (72) T 1fqt_A 52 SLHMGKFCVRTGKVKSP 68 (72) T ss_dssp TTTCCEEETTTCCEEES T ss_pred CCCCCEEECCCCCCCCC T ss_conf 88898999998569458 No 21 >>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle, hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A (A:196-308) Probab=42.62 E-value=16 Score=16.62 Aligned_cols=31 Identities=32% Similarity=0.521 Sum_probs=23.0 Q ss_pred HHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH Q ss_conf 88877672205766899981585389887530 Q gi|254780663|r 82 SAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLD 113 (207) Q Consensus 82 ~~sle~av~~l~v~~iiV~GHt~CGav~aa~~ 113 (207) .+.++-....++++.||| |||-=.+|...++ T Consensus 72 c~~l~~~L~~~g~~riVv-GHTpq~~i~~~c~ 102 (113) T 2z72_A 72 EAELDTILQHFNVNHIVV-GHTSQERVLGLFH 102 (113) T ss_dssp HHHHHHHHHHHTCSEEEE-CSSCCSSCEEETT T ss_pred HHHHHHHHHHCCCCEEEE-CCEECCCCCEEEC T ss_conf 789999998779979999-7846378768419 No 22 >>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} (A:12-82) Probab=42.17 E-value=7.5 Score=18.75 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=12.3 Q ss_pred EEEEEEEECCCCEEEE Q ss_conf 7999999889876999 Q gi|254780663|r 179 QIHGAWFDISSGKLWI 194 (207) Q Consensus 179 ~I~G~~yDi~tG~v~~ 194 (207) ..|||.||+.||++.. T Consensus 51 p~Hg~~Fdl~tG~~~~ 66 (71) T 3dqy_A 51 TLHFGKFXVRTGKVKA 66 (71) T ss_dssp TTTCCEEETTTCCEEE T ss_pred ECCCCEEECCCCEEEC T ss_conf 4588789889822945 No 23 >>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida} (A:14-84) Probab=40.39 E-value=6.9 Score=18.96 Aligned_cols=17 Identities=29% Similarity=0.560 Sum_probs=13.3 Q ss_pred EEEEEEEECCCCEEEEE Q ss_conf 79999998898769998 Q gi|254780663|r 179 QIHGAWFDISSGKLWIL 195 (207) Q Consensus 179 ~I~G~~yDi~tG~v~~l 195 (207) +.|||.||+.||++..- T Consensus 51 p~H~~~fdl~tG~~~~~ 67 (71) T 2qpz_A 51 PLHQGRFDVCTGKALCA 67 (71) T ss_dssp TTTTCEEETTTCCEEET T ss_pred CCCCCEEECCCCCEECC T ss_conf 16898996898228448 No 24 >>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} (A:) Probab=40.10 E-value=21 Score=15.82 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=15.0 Q ss_pred CCEEEEEEEECCCCEEEEE Q ss_conf 9679999998898769998 Q gi|254780663|r 177 MLQIHGAWFDISSGKLWIL 195 (207) Q Consensus 177 ~l~I~G~~yDi~tG~v~~l 195 (207) ++.|.||+.+..+|.|+.+ T Consensus 36 ~lgl~G~V~N~~dG~Vei~ 54 (102) T 1urr_A 36 RLGVRGWCMNTRDGTVKGQ 54 (102) T ss_dssp HHTCEEEEEECTTSCEEEE T ss_pred HCCCEEEEEECCCCCEEEE T ss_conf 8399799999799979999 No 25 >>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D* (D:50-86) Probab=39.80 E-value=7.7 Score=18.67 Aligned_cols=17 Identities=24% Similarity=0.385 Sum_probs=14.2 Q ss_pred EEEEEEEECCCCEEEEE Q ss_conf 79999998898769998 Q gi|254780663|r 179 QIHGAWFDISSGKLWIL 195 (207) Q Consensus 179 ~I~G~~yDi~tG~v~~l 195 (207) +.||+.||+.||++... T Consensus 17 P~H~a~Fdi~tG~~~~~ 33 (37) T 2de6_D 17 PFHGGAFNVCTGMPASS 33 (37) T ss_dssp TTTCCEEETTTCCEEET T ss_pred CCCCCEEECCCCEECCC T ss_conf 45688884899519868 No 26 >>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} (A:1-147) Probab=39.59 E-value=13 Score=17.27 Aligned_cols=20 Identities=15% Similarity=0.022 Sum_probs=13.8 Q ss_pred CEEEEEEEECCCCEEEEEEC Q ss_conf 67999999889876999846 Q gi|254780663|r 178 LQIHGAWFDISSGKLWILDP 197 (207) Q Consensus 178 l~I~G~~yDi~tG~v~~l~~ 197 (207) -..|||.||++||++..... T Consensus 90 Cp~H~~~f~l~tG~~~~~p~ 109 (147) T 2de6_A 90 CWYHAWTYRWEDGVLCDILT 109 (147) T ss_dssp CTTTCEEEETTTCBEEEETT T ss_pred CCCCCEEEECCCCCCCCCCC T ss_conf 79788599535441000000 No 27 >>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2k7k_A 2k7j_A 2acy_A (A:) Probab=37.64 E-value=26 Score=15.24 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=16.5 Q ss_pred CCEEEEEEEECCCCEEEE-EECC Q ss_conf 967999999889876999-8468 Q gi|254780663|r 177 MLQIHGAWFDISSGKLWI-LDPT 198 (207) Q Consensus 177 ~l~I~G~~yDi~tG~v~~-l~~~ 198 (207) ++.|.||+.+..+|.|+. +.++ T Consensus 33 ~~gl~G~V~N~~dG~V~~~~qG~ 55 (99) T 2vh7_A 33 KLGLVGWVQNTDRGTVQGQLQGP 55 (99) T ss_dssp HTTCEEEEEECTTSCEEEEEEEE T ss_pred HHCCEEEEEECCCCEEEEEEEEC T ss_conf 81988999999999899999809 No 28 >>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae} (A:49-86) Probab=37.37 E-value=5.3 Score=19.70 Aligned_cols=16 Identities=38% Similarity=0.617 Sum_probs=13.2 Q ss_pred EEEEEEEECCCCEEEE Q ss_conf 7999999889876999 Q gi|254780663|r 179 QIHGAWFDISSGKLWI 194 (207) Q Consensus 179 ~I~G~~yDi~tG~v~~ 194 (207) ..||+.||+.||++.. T Consensus 17 P~H~~~Fdi~tG~~~~ 32 (38) T 2i7f_A 17 PFHGGSFDIATGAAKA 32 (38) T ss_dssp SSTTCEEETTTCCBCS T ss_pred CCCCCEEECCCCCEEC T ss_conf 2558798578885816 No 29 >>2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY diffraction; 1.60A {Xanthomonas campestris} (A:) Probab=37.16 E-value=26 Score=15.19 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=35.5 Q ss_pred EECCCCCCCCCCC-CCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH Q ss_conf 8624223457777-753025788877672205766899981585389887530 Q gi|254780663|r 62 VRNVANIVPPYEP-DGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLD 113 (207) Q Consensus 62 ~RnaGn~v~~~~~-~~~~~~~~~sle~av~~l~v~~iiV~GHt~CGav~aa~~ 113 (207) .|-.|..-.+... ..........+.+.....+.+.|.++|||-.|.+...+. T Consensus 77 ~rg~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a 129 (220) T 2fuk_A 77 FRSVGTSAGSFDHGDGEQDDLRAVAEWVRAQRPTDTLWLAGFSFGAYVSLRAA 129 (220) T ss_dssp CTTSTTCCSCCCTTTHHHHHHHHHHHHHHHHCTTSEEEEEEETHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHH T ss_conf 57755678877777534999999988865415674599999646505441111 No 30 >>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} (A:) Probab=35.47 E-value=28 Score=15.06 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=16.2 Q ss_pred CCEEEEEEEECCCCEEEEE Q ss_conf 9679999998898769998 Q gi|254780663|r 177 MLQIHGAWFDISSGKLWIL 195 (207) Q Consensus 177 ~l~I~G~~yDi~tG~v~~l 195 (207) ++.|.||+.+..+|.|+.+ T Consensus 29 ~~gl~G~V~N~~dG~Vei~ 47 (91) T 1w2i_A 29 KLGVNGWVRNLPDGSVEAV 47 (91) T ss_dssp HHTCEEEEEECTTSCEEEE T ss_pred HCCCEEEEEECCCCEEEEE T ss_conf 6397379999999859999 No 31 >>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural genomics, NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii OT3} (A:163-357) Probab=35.24 E-value=19 Score=16.17 Aligned_cols=10 Identities=10% Similarity=0.175 Sum_probs=3.3 Q ss_pred EEEEEECCCC Q ss_conf 5999962678 Q gi|254780663|r 35 KIMIISCCDS 44 (207) Q Consensus 35 ~~~vitC~Ds 44 (207) .++++|..++ T Consensus 7 ~v~ivG~~~~ 16 (195) T 2e87_A 7 TVVIAGHPNV 16 (195) T ss_dssp EEEEECSTTS T ss_pred EEEEECCCCC T ss_conf 7999617884 No 32 >>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} (A:1-215) Probab=34.10 E-value=15 Score=16.71 Aligned_cols=58 Identities=17% Similarity=0.042 Sum_probs=25.7 Q ss_pred CEEEEEECCCCCC-CHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE Q ss_conf 7599996267899-88885178866248886242234577777530257888776722057668999 Q gi|254780663|r 34 PKIMIISCCDSRV-APETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVV 99 (207) Q Consensus 34 P~~~vitC~DsRv-~~~~i~~~~~Gd~fv~RnaGn~v~~~~~~~~~~~~~~sle~av~~l~v~~iiV 99 (207) .++.+|-|.-..- ..+.+.++...|.-++=..+.-- ....+...+. ....+|++.++| T Consensus 75 ~~~~~iDtPGh~dF~~~~~~~~~~~D~ailVvda~~G-------~~~qT~~~~~-~a~~~~~~~~iv 133 (215) T 2c78_A 75 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADG-------PMPQTREHIL-LARQVGVPYIVV 133 (215) T ss_dssp CEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTC-------CCHHHHHHHH-HHHHTTCCCEEE T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEECCCC-------CCHHHHHHHH-HHHHCCCCEEEE T ss_conf 4899962898177899987435109989999998999-------8554599999-999859986999 No 33 >>1aps_A Acylphosphatase; hydrolase(acting on acid anhydrides); NMR {Equus caballus} (A:) Probab=33.51 E-value=26 Score=15.22 Aligned_cols=19 Identities=16% Similarity=0.027 Sum_probs=15.6 Q ss_pred CCEEEEEEEECCCCEEEEE Q ss_conf 9679999998898769998 Q gi|254780663|r 177 MLQIHGAWFDISSGKLWIL 195 (207) Q Consensus 177 ~l~I~G~~yDi~tG~v~~l 195 (207) ++.|.||+.+..+|.|+.+ T Consensus 32 ~~gl~G~V~N~~dG~Vei~ 50 (98) T 1aps_A 32 KIGVVGWVKNTSKGTVTGQ 50 (98) T ss_dssp HHTCEEEEECCTTCEEEEE T ss_pred HCCCEEEEEECCCCCEEEE T ss_conf 8599699999999989999 No 34 >>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} (7:1-289) Probab=32.88 E-value=17 Score=16.46 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=26.8 Q ss_pred HHHHHCCCC--CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHH Q ss_conf 888517886--62488862422345777775302578887767220576689998158538 Q gi|254780663|r 48 PETIFNAKP--GELFVVRNVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCG 106 (207) Q Consensus 48 ~~~i~~~~~--Gd~fv~RnaGn~v~~~~~~~~~~~~~~sle~av~~l~v~~iiV~GHt~CG 106 (207) .+.+.++.. |=++|+--..++-+ -...+-+....++++.|+++=+-|-= T Consensus 97 ~~~~~~l~~~D~ailVVdA~~Gv~~----------qT~~~~~~a~~~~~p~i~~iNK~D~~ 147 (289) T 2rdo_7 97 IEVERSMRVLDGAVMVYCAVGGVQP----------QSETVWRQANKYKVPRIAFVNKMDRM 147 (289) T ss_pred HHHHHHHHHHCEEEEEEECCCCCCH----------HHHHHHHHHHHCCCCEEEEEECCCCC T ss_conf 9999999885857999978988647----------58999999987699869997330245 No 35 >>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} (A:) Probab=32.07 E-value=32 Score=14.66 Aligned_cols=19 Identities=16% Similarity=0.319 Sum_probs=16.6 Q ss_pred CCEEEEEEEECCCCEEEEE Q ss_conf 9679999998898769998 Q gi|254780663|r 177 MLQIHGAWFDISSGKLWIL 195 (207) Q Consensus 177 ~l~I~G~~yDi~tG~v~~l 195 (207) ++.|.||+.+..+|.|+.+ T Consensus 27 ~~~l~G~V~N~~dG~Vei~ 45 (88) T 1ulr_A 27 ELGLSGYAENLPDGRVEVV 45 (88) T ss_dssp HTTCEEEEEECTTSCEEEE T ss_pred HHCCEEEEEECCCCCEEEE T ss_conf 7399389999999989999 No 36 >>2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase fold, structural genomics; 2.20A {Trypanosoma brucei} (A:) Probab=31.27 E-value=33 Score=14.58 Aligned_cols=83 Identities=5% Similarity=-0.021 Sum_probs=45.4 Q ss_pred CCCCCEEEEEE--CCCCC---CCHHHHHCCCCC-CEEEE--ECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 38997599996--26789---988885178866-24888--624223457777753025788877672205766899981 Q gi|254780663|r 30 NQQKPKIMIIS--CCDSR---VAPETIFNAKPG-ELFVV--RNVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMG 101 (207) Q Consensus 30 ~~q~P~~~vit--C~DsR---v~~~~i~~~~~G-d~fv~--RnaGn~v~~~~~~~~~~~~~~sle~av~~l~v~~iiV~G 101 (207) .+..|-++++- ++.+. .-....--...| .++.+ |--|.--++.............+++.+..++.+.+.++| T Consensus 35 ~~~~~~vv~iHG~~~~~~~~~~~~~~~~~~~~g~~vi~~D~rG~G~S~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~g 114 (335) T 2q0x_A 35 MDARRCVLWVGGQTESLLSFDYFTNLAEELQGDWAFVQVEVPSGKIGSGPQDHAHDAEDVDDLIGILLRDHCMNEVALFA 114 (335) T ss_dssp TTSSSEEEEECCTTCCTTCSTTHHHHHHHHTTTCEEEEECCGGGBTTSCSCCHHHHHHHHHHHHHHHHHHSCCCCEEEEE T ss_pred CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 99886799989988655530579999999715976999656899898898873158999999999999866987669999 Q ss_pred CCCHHHHHHHH Q ss_conf 58538988753 Q gi|254780663|r 102 HGRCGGIQAVL 112 (207) Q Consensus 102 Ht~CGav~aa~ 112 (207) ||-.|++...+ T Consensus 115 ~S~G~~~~~~~ 125 (335) T 2q0x_A 115 TSTGTQLVFEL 125 (335) T ss_dssp EGGGHHHHHHH T ss_pred ECCCHHHHHHH T ss_conf 56647999999 No 37 >>2vtv_A PHB depolymerase PHAZ7; hydrolase; 1.9A {Paucimonas lemoignei} (A:15-173,A:221-342) Probab=31.20 E-value=33 Score=14.57 Aligned_cols=35 Identities=6% Similarity=-0.053 Sum_probs=27.7 Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH Q ss_conf 25788877672205766899981585389887530 Q gi|254780663|r 79 HATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLD 113 (207) Q Consensus 79 ~~~~~sle~av~~l~v~~iiV~GHt~CGav~aa~~ 113 (207) ....+.++.-...++.+.|+++|||--|.+...+. T Consensus 98 ~Dlaa~i~~L~~~~g~~rVvLvGHSmGG~vAl~lA 132 (281) T 2vtv_A 98 AIIKTFIDKVKAYTGKSQVDIVAHSMGVSMSLATL 132 (281) T ss_dssp HHHHHHHHHHHHHHTCSCEEEEEETHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHH T ss_conf 99999999999975998568999783379999999 No 38 >>1j1i_A META cleavage compound hydrolase; carbazole degradation, META cleavage product hydrolase, histidine tagged protein, alpha/beta-hydrolase; 1.86A {Janthinobacterium} (A:) Probab=30.57 E-value=34 Score=14.50 Aligned_cols=84 Identities=7% Similarity=0.046 Sum_probs=48.2 Q ss_pred CCCCCEEEEEE--CCCCCCCHHH--HH-CCCCC-CEEEE--ECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 38997599996--2678998888--51-78866-24888--624223457777753025788877672205766899981 Q gi|254780663|r 30 NQQKPKIMIIS--CCDSRVAPET--IF-NAKPG-ELFVV--RNVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMG 101 (207) Q Consensus 30 ~~q~P~~~vit--C~DsRv~~~~--i~-~~~~G-d~fv~--RnaGn~v~~~~~~~~~~~~~~sle~av~~l~v~~iiV~G 101 (207) .|+.|-+++|- +.+++.--.. ++ .+..| .++.+ |.-|.--.+.+...........++..+..++.+-++++| T Consensus 33 ~g~~~~ivllHG~~~~~~~~~~~~~~~~~l~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG 112 (296) T 1j1i_A 33 AGKGQPVILIHGGGAGAESEGNWRNVIPILARHYRVIAMDMLGFGKTAKPDIEYTQDRRIRHLHDFIKAMNFDGKVSIVG 112 (296) T ss_dssp ECCSSEEEEECCCSTTCCHHHHHTTTHHHHTTTSEEEEECCTTSTTSCCCSSCCCHHHHHHHHHHHHHHSCCSSCEEEEE T ss_pred ECCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE T ss_conf 88898399989999894477899999999847998999837998888999888899999999999888628888779999 Q ss_pred CCCHHHHHHHHH Q ss_conf 585389887530 Q gi|254780663|r 102 HGRCGGIQAVLD 113 (207) Q Consensus 102 Ht~CGav~aa~~ 113 (207) ||--|.+...+. T Consensus 113 ~S~Gg~ia~~~a 124 (296) T 1j1i_A 113 NSMGGATGLGVS 124 (296) T ss_dssp EHHHHHHHHHHH T ss_pred ECCCHHHHHCCC T ss_conf 234321100003 No 39 >>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} (A:1-181) Probab=30.52 E-value=17 Score=16.41 Aligned_cols=13 Identities=23% Similarity=0.524 Sum_probs=6.0 Q ss_pred CCEEEEEECCCHH Q ss_conf 6689998158538 Q gi|254780663|r 94 VEHIVVMGHGRCG 106 (207) Q Consensus 94 v~~iiV~GHt~CG 106 (207) ...|+++||++|| T Consensus 8 ~~~i~iiG~~nvG 20 (181) T 1ega_A 8 CGFIAIVGRPNVG 20 (181) T ss_dssp EEEEEEECSSSSS T ss_pred CCEEEEECCCCCC T ss_conf 7489999899982 No 40 >>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} (A:1-79,A:278-297) Probab=30.50 E-value=34 Score=14.49 Aligned_cols=29 Identities=17% Similarity=0.156 Sum_probs=20.8 Q ss_pred CCCEEEEEEEECCCCEEEEEECCCCEEEE Q ss_conf 99679999998898769998468882583 Q gi|254780663|r 176 HMLQIHGAWFDISSGKLWILDPTSNEFTC 204 (207) Q Consensus 176 g~l~I~G~~yDi~tG~v~~l~~~~~~F~~ 204 (207) .++.=.=++||++||..+++-.....||- T Consensus 18 ~~~~S~LeI~Dv~TG~~~VV~~~~~~iEA 46 (99) T 2ojh_A 18 GSXRSSIEIFNIRTRKXRVVWQTPELFEA 46 (99) T ss_dssp CCCCEEEEEEETTTTEEEEEEEESSCCEE T ss_pred CCCEEEEEEEECCCCCEEEEECCCCCEEE T ss_conf 98552899998999998999889997860 No 41 >>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} (I:1-170) Probab=30.39 E-value=21 Score=15.87 Aligned_cols=24 Identities=8% Similarity=-0.069 Sum_probs=16.4 Q ss_pred HHHHHHHHCCCCCEEEEEECCCHH Q ss_conf 887767220576689998158538 Q gi|254780663|r 83 AAIEFAVQGLNVEHIVVMGHGRCG 106 (207) Q Consensus 83 ~sle~av~~l~v~~iiV~GHt~CG 106 (207) .-+..-+..++.+.|+|+-.-|.- T Consensus 93 ~~~~~~~~~~~~p~iiv~NK~D~~ 116 (170) T 1zo1_I 93 IEAIQHAKAAQVPVVVAVNKIDKP 116 (170) T ss_dssp HHHHHHHHHTTCCEEEEEECSSSS T ss_pred HHHHHHHHHCCCCEEEEEECCCCC T ss_conf 999999998699889999896689 No 42 >>2gv1_A Probable acylphosphatase; globular alpha-helix/beta-sheet protein, hydrolase; NMR {Escherichia coli} (A:) Probab=29.95 E-value=19 Score=16.07 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=14.8 Q ss_pred CCEEEEEEEECCCCEEEEE Q ss_conf 9679999998898769998 Q gi|254780663|r 177 MLQIHGAWFDISSGKLWIL 195 (207) Q Consensus 177 ~l~I~G~~yDi~tG~v~~l 195 (207) ++.|.||+.+..+|.|+.+ T Consensus 29 ~~gi~G~V~N~~dg~Vei~ 47 (92) T 2gv1_A 29 RLGLTGYAKNLDDGSVEVV 47 (92) T ss_dssp HHTCCCEEEECSSSCEEEE T ss_pred HCCCEEEEEECCCCCEEEE T ss_conf 7097379999899989999 No 43 >>2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A* (A:1-130,A:200-276) Probab=29.13 E-value=36 Score=14.35 Aligned_cols=81 Identities=20% Similarity=0.188 Sum_probs=45.2 Q ss_pred CCCCEEEEEE--CCCCCCCHHHHHCC-CCCCEEEE--ECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCH Q ss_conf 8997599996--26789988885178-86624888--6242234577777530257888776722057668999815853 Q gi|254780663|r 31 QQKPKIMIIS--CCDSRVAPETIFNA-KPGELFVV--RNVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRC 105 (207) Q Consensus 31 ~q~P~~~vit--C~DsRv~~~~i~~~-~~Gd~fv~--RnaGn~v~~~~~~~~~~~~~~sle~av~~l~v~~iiV~GHt~C 105 (207) +..|.++++- |++++.--..+-.. .-..+.++ |.-|.--.+.. ..........+...+..++.+.++++|||-- T Consensus 25 ~~~p~IillHG~~~s~~~~~~l~~~La~g~~Vi~~d~pG~G~S~~~~~-~~~~~~~a~~i~~~l~~l~~~~i~ivGhSmG 103 (207) T 2wj6_A 25 TDGPAILLLPGWCHDHRVYKYLIQELDADFRVIVPNWRGHGLSPSEVP-DFGYQEQVKDALEILDQLGVETFLPVSHSHG 103 (207) T ss_dssp CSSCEEEEECCTTCCGGGGHHHHHHHTTTSCEEEECCTTCSSSCCCCC-CCCHHHHHHHHHHHHHHHTCCSEEEEEEGGG T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 999959998999889899999999982799899982899999999999-9999999999999999728887699974377 Q ss_pred HHHHHHH Q ss_conf 8988753 Q gi|254780663|r 106 GGIQAVL 112 (207) Q Consensus 106 Gav~aa~ 112 (207) |.+...+ T Consensus 104 G~iAl~l 110 (207) T 2wj6_A 104 GWVLVEL 110 (207) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 8999999 No 44 >>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* (A:) Probab=28.83 E-value=25 Score=15.34 Aligned_cols=16 Identities=6% Similarity=-0.056 Sum_probs=8.2 Q ss_pred CCCCEEEEEECCCCCC Q ss_conf 8997599996267899 Q gi|254780663|r 31 QQKPKIMIISCCDSRV 46 (207) Q Consensus 31 ~q~P~~~vitC~DsRv 46 (207) ...|.++++|=.++.= T Consensus 36 ~~~~~i~iiG~~n~GK 51 (226) T 2hf9_A 36 HGVVAFDFMGAIGSGK 51 (226) T ss_dssp TTCEEEEEEESTTSSH T ss_pred CCCEEEEEECCCCCCH T ss_conf 5984999988999889 No 45 >>1zo0_A ODC-AZ, ornithine decarboxylase antizyme; ornithine decarboxylase inhibitor, lyase inhibitor; NMR {Rattus norvegicus} (A:) Probab=28.62 E-value=36 Score=14.29 Aligned_cols=69 Identities=20% Similarity=0.316 Sum_probs=41.6 Q ss_pred ECCCCCCCHHHH--HCC--CCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH Q ss_conf 626789988885--178--86624888624223457777753025788877672205766899981585389887530 Q gi|254780663|r 40 SCCDSRVAPETI--FNA--KPGELFVVRNVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLD 113 (207) Q Consensus 40 tC~DsRv~~~~i--~~~--~~Gd~fv~RnaGn~v~~~~~~~~~~~~~~sle~av~~l~v~~iiV~GHt~CGav~aa~~ 113 (207) =+-.+|+.+... |.. .-+-+||.= .-...+ .+.-.+.++-||||-..|++.+|++|=+-+...-.+.+. T Consensus 23 L~f~~rlte~~~~~W~~vl~~~~L~v~i-p~~~l~----~gsKesl~aLLE~Aee~L~c~~vvic~~k~r~dr~~L~r 95 (126) T 1zo0_A 23 LSIQCTLTEAKQVTWRAVWNGGGLYIEL-PAGPLP----EGSKDSFAALLEFAEEQLRADHVFICFPKNREDRAALLR 95 (126) T ss_dssp EEEEECCTTSCCEEEEEEEETTEEEEEC-SSCCCS----SCCSHHHHHHHHHHHHHHCCCCEEEEECCCSSCHHHHHH T ss_pred EEEEEEECCCEEEEEEEEEECCEEEEEC-CCCCCC----CHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHH T ss_conf 9999880556189999998288889988-876472----111889999999754323876899999788745888764 No 46 >>3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like hydrolase, structural genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm 1728} (A:) Probab=28.25 E-value=37 Score=14.25 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=29.1 Q ss_pred CHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH Q ss_conf 025788877672205766899981585389887530 Q gi|254780663|r 78 HHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLD 113 (207) Q Consensus 78 ~~~~~~sle~av~~l~v~~iiV~GHt~CGav~aa~~ 113 (207) .......++..+..++.+.++++|||-=|.+...+. T Consensus 83 ~~~~a~~i~~~~~~l~~~~~~l~G~S~Gg~~a~~~a 118 (207) T 3bdi_A 83 LKHAAEFIRDYLKANGVARSVIXGASXGGGXVIXTT 118 (207) T ss_dssp HHHHHHHHHHHHHHTTCSSEEEEEETHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCCCCCEECCCCCCCHHHHHHH T ss_conf 778877766402232223320023557858999999 No 47 >>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.0A {Escherichia coli} (A:1-90) Probab=28.06 E-value=23 Score=15.54 Aligned_cols=19 Identities=47% Similarity=0.565 Sum_probs=14.0 Q ss_pred EECCCCCCCHHHHHCCCCCCEEEEEC Q ss_conf 96267899888851788662488862 Q gi|254780663|r 39 ISCCDSRVAPETIFNAKPGELFVVRN 64 (207) Q Consensus 39 itC~DsRv~~~~i~~~~~Gd~fv~Rn 64 (207) ==|.|||- ..+|++|+-.- T Consensus 23 ~i~~DSR~-------v~~g~lFvAl~ 41 (90) T 1e8c_A 23 EXTLDSRV-------AAAGDLFVAVV 41 (90) T ss_dssp CEESCGGG-------CCTTCEEEECB T ss_pred EEEEECCC-------CCCCCEEEECC T ss_conf 49965882-------79997899816 No 48 >>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} (P:) Probab=26.98 E-value=37 Score=14.25 Aligned_cols=31 Identities=13% Similarity=0.075 Sum_probs=21.0 Q ss_pred CCHHHHHHHHHHHHCCCCCEEEEEECCCHHH Q ss_conf 3025788877672205766899981585389 Q gi|254780663|r 77 QHHATSAAIEFAVQGLNVEHIVVMGHGRCGG 107 (207) Q Consensus 77 ~~~~~~~sle~av~~l~v~~iiV~GHt~CGa 107 (207) .....+..+.-.+....-..|.|.||||..+ T Consensus 44 ~~~~~L~~~a~~l~~~p~~~i~I~Ghtd~~g 74 (134) T 2aiz_P 44 EYVQILDAHAAYLNATPAAKVLVEGNTDERG 74 (134) T ss_dssp HHHHHHHHHHHHHHHSTTCCEEEEEECCSSS T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCCC T ss_conf 8999999999999869984899973124343 No 49 >>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A (A:1-182) Probab=26.82 E-value=24 Score=15.41 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=11.4 Q ss_pred CCCEEEEEECCCHHH Q ss_conf 766899981585389 Q gi|254780663|r 93 NVEHIVVMGHGRCGG 107 (207) Q Consensus 93 ~v~~iiV~GHt~CGa 107 (207) +-+.|+++|+++||= T Consensus 3 ~G~~i~liG~sGsGK 17 (182) T 3a4m_A 3 DIMLIILTGLPGVGK 17 (182) T ss_dssp CCEEEEEECCTTSSH T ss_pred CCEEEEEECCCCCCH T ss_conf 977998889999989 No 50 >>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} (A:58-108) Probab=26.68 E-value=23 Score=15.58 Aligned_cols=17 Identities=18% Similarity=0.188 Sum_probs=13.1 Q ss_pred EEEEEECCCCEEEEEEC Q ss_conf 99999889876999846 Q gi|254780663|r 181 HGAWFDISSGKLWILDP 197 (207) Q Consensus 181 ~G~~yDi~tG~v~~l~~ 197 (207) .=|+||++|+.+..+++ T Consensus 34 ~Y~iydi~t~~~~~l~~ 50 (51) T 1z68_A 34 TYYIYDLSNGEFVRGNE 50 (51) T ss_dssp EEEEEETTTTEECCSSC T ss_pred EEEEEECCCCCEEECCC T ss_conf 29999899996886677 No 51 >>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* (A:) Probab=26.45 E-value=26 Score=15.18 Aligned_cols=15 Identities=0% Similarity=0.069 Sum_probs=7.6 Q ss_pred CCCCEEEEEECCCCC Q ss_conf 899759999626789 Q gi|254780663|r 31 QQKPKIMIISCCDSR 45 (207) Q Consensus 31 ~q~P~~~vitC~DsR 45 (207) ...+.++++|=..+. T Consensus 34 ~~~~~v~ivG~~~~G 48 (262) T 3def_A 34 MNSMTVLVLGKGGVG 48 (262) T ss_dssp CCEEEEEEEECTTSS T ss_pred CCCCEEEEECCCCCC T ss_conf 887389998999987 No 52 >>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A (A:1-168,A:240-278) Probab=25.88 E-value=27 Score=15.09 Aligned_cols=21 Identities=5% Similarity=-0.084 Sum_probs=9.4 Q ss_pred HHHHHHHCCCCCEEEEEECCC Q ss_conf 877672205766899981585 Q gi|254780663|r 84 AIEFAVQGLNVEHIVVMGHGR 104 (207) Q Consensus 84 sle~av~~l~v~~iiV~GHt~ 104 (207) .+...+...+++.|+|+=.-| T Consensus 125 ~~~~~l~~~~iPiiVviNKiD 145 (207) T 2h5e_A 125 KLMEVTRLRDTPILTFMNKLD 145 (207) T ss_dssp HHHHHHTTTTCCEEEEEECTT T ss_pred HHHHHHHHHCCCEEEEEEEEC T ss_conf 889999862664376532104 No 53 >>2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A {Cryptococcus neoformans} PDB: 2w3n_A (A:1-63) Probab=25.79 E-value=41 Score=13.96 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=11.9 Q ss_pred HHHHHHHHHHHHCC--CCHHHHHHHHCCC Q ss_conf 99999999997068--7988999862389 Q gi|254780663|r 6 NTLLERHREFIQDQ--YDKKLFQELANQQ 32 (207) Q Consensus 6 ~~Ll~~N~~f~~~~--~~~~~~~~l~~~q 32 (207) .+.++||+-|++.. ..|++.....+|| T Consensus 35 revlegnrywarkvtseepefmaeqvkgq 63 (63) T 2w3q_A 35 REVLEGNRYWARKVTSEEPEFMAEQVKGQ 63 (63) T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHCC T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHCCC T ss_conf 99999999999750310978999863799 No 54 >>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell membrane, GTP-binding, ION transport; 2.50A {Legionella pneumophila} (A:1-169,A:253-256) Probab=25.55 E-value=31 Score=14.70 Aligned_cols=11 Identities=36% Similarity=1.087 Sum_probs=4.2 Q ss_pred EEEEEECCCHH Q ss_conf 89998158538 Q gi|254780663|r 96 HIVVMGHGRCG 106 (207) Q Consensus 96 ~iiV~GHt~CG 106 (207) .|+++||++|| T Consensus 3 kI~iiG~~~vG 13 (173) T 3iby_A 3 HALLIGNPNCG 13 (173) T ss_dssp EEEEEESTTSS T ss_pred EEEEECCCCCC T ss_conf 89998999968 No 55 >>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase; 2.10A {Mycobacterium tuberculosis} (A:1-50,A:103-207) Probab=25.30 E-value=33 Score=14.55 Aligned_cols=20 Identities=15% Similarity=0.109 Sum_probs=15.0 Q ss_pred HHCCCCCEEEEEECCCHHHH Q ss_conf 22057668999815853898 Q gi|254780663|r 89 VQGLNVEHIVVMGHGRCGGI 108 (207) Q Consensus 89 v~~l~v~~iiV~GHt~CGav 108 (207) +..-.-+.+.++|+|+||=- T Consensus 15 ~~i~~g~~~~~~GpsG~GKs 34 (155) T 1znw_A 15 QPAAVGRVVVLSGPSAVGKS 34 (155) T ss_dssp ----CCCEEEEECSTTSSHH T ss_pred CCCCCCCEEEEECCCCCCHH T ss_conf 98878808999898999999 No 56 >>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} (B:1-238) Probab=24.80 E-value=30 Score=14.87 Aligned_cols=12 Identities=8% Similarity=0.166 Sum_probs=6.7 Q ss_pred EEEEEECCCCCC Q ss_conf 599996267899 Q gi|254780663|r 35 KIMIISCCDSRV 46 (207) Q Consensus 35 ~~~vitC~DsRv 46 (207) -++++|..|+.= T Consensus 26 ni~viGHvd~GK 37 (238) T 1zun_B 26 RFLTCGNVDDGK 37 (238) T ss_dssp EEEEECCTTSSH T ss_pred EEEEEEECCCCH T ss_conf 699995348208 No 57 >>2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli K12} (A:) Probab=24.70 E-value=43 Score=13.84 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=19.3 Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCHHH Q ss_conf 25788877672205766899981585389 Q gi|254780663|r 79 HATSAAIEFAVQGLNVEHIVVMGHGRCGG 107 (207) Q Consensus 79 ~~~~~sle~av~~l~v~~iiV~GHt~CGa 107 (207) ...+..|.--+....-..|.|.||||.-+ T Consensus 50 ~~~L~~ia~~L~~~p~~~i~I~Ghtd~~g 78 (149) T 2k1s_A 50 ANTLTGVAMVLKEYPKTAVNVIGYTDSTG 78 (149) T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEECCCTT T ss_pred HHHHHHHHHHHHCCCCCCEEECCCCCCCC T ss_conf 99999887777318875201022413544 No 58 >>1orv_A Dipeptidyl peptidase IV; serine protease, mechanism, oxyanion HOLE, substrate channeling, drug design, diabetes mellitus, hydrolase; HET: NAG BMA; 1.80A {Sus scrofa} (A:58-110) Probab=24.38 E-value=27 Score=15.13 Aligned_cols=17 Identities=12% Similarity=0.167 Sum_probs=12.6 Q ss_pred EEEEEECCCCEEEEEEC Q ss_conf 99999889876999846 Q gi|254780663|r 181 HGAWFDISSGKLWILDP 197 (207) Q Consensus 181 ~G~~yDi~tG~v~~l~~ 197 (207) .=|+||++||.+.-+++ T Consensus 36 ~Y~iydi~t~~~~~l~~ 52 (53) T 1orv_A 36 SYDIYDLNKRQLITEER 52 (53) T ss_dssp EEEEEETTTTEECCSSC T ss_pred EEEEEECCCCCCCCCCC T ss_conf 19999899997834557 No 59 >>1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} (A:) Probab=24.30 E-value=43 Score=13.79 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=21.1 Q ss_pred EEEEEECCCCEEEEEECCCCEEEECCC Q ss_conf 999998898769998468882583359 Q gi|254780663|r 181 HGAWFDISSGKLWILDPTSNEFTCDTR 207 (207) Q Consensus 181 ~G~~yDi~tG~v~~l~~~~~~F~~~~~ 207 (207) |..=.-++.|.|.+|||..+.|++++. T Consensus 132 Hava~~~~~~~vtfFDPNfGEF~~~s~ 158 (188) T 1ukf_A 132 HAIACSCEGSQFKLFDPNLGEFQSSRS 158 (188) T ss_dssp EEEEEEEETTEEEEEETTTEEEEEETT T ss_pred EEEEEEECCCEEEEECCCCCCEECCHH T ss_conf 279998669907998899872566706 No 60 >>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} (A:1-167) Probab=24.24 E-value=34 Score=14.49 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=10.9 Q ss_pred CCCEEEEEECCCHHH Q ss_conf 766899981585389 Q gi|254780663|r 93 NVEHIVVMGHGRCGG 107 (207) Q Consensus 93 ~v~~iiV~GHt~CGa 107 (207) |-+.|+++|+++||= T Consensus 2 ~k~~I~iiG~~nvGK 16 (167) T 2hjg_A 2 GKPVVAIVGRPNVGK 16 (167) T ss_dssp -CCEEEEECSTTSSH T ss_pred CCCEEEEECCCCCCH T ss_conf 989999998999989 No 61 >>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein/lipoprotein complex; 1.50A {Escherichia coli} (H:) Probab=23.81 E-value=44 Score=13.73 Aligned_cols=33 Identities=15% Similarity=0.086 Sum_probs=21.1 Q ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHH Q ss_conf 753025788877672205766899981585389 Q gi|254780663|r 75 DGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGG 107 (207) Q Consensus 75 ~~~~~~~~~sle~av~~l~v~~iiV~GHt~CGa 107 (207) .......+..+.-.+....--.|.|.||||+.+ T Consensus 18 ~~~~~~~L~~ia~~l~~~p~~~i~I~Ghtd~~g 50 (118) T 2hqs_H 18 RSDFAQMLDAHANFLRSNPSYKVTVEGHADERG 50 (118) T ss_dssp CGGGHHHHHHHHHHHHHCTTCCEEEEECCCSSS T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC T ss_conf 988999999999999769994899984233232 No 62 >>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A (A:1-173) Probab=23.57 E-value=28 Score=15.04 Aligned_cols=11 Identities=18% Similarity=0.471 Sum_probs=5.3 Q ss_pred EEEEEECCCHH Q ss_conf 89998158538 Q gi|254780663|r 96 HIVVMGHGRCG 106 (207) Q Consensus 96 ~iiV~GHt~CG 106 (207) .|+++||++|| T Consensus 7 ki~iiG~~~vG 17 (173) T 3a1s_A 7 KVALAGCPNVG 17 (173) T ss_dssp EEEEECCTTSS T ss_pred EEEEECCCCCC T ss_conf 89999999998 No 63 >>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} (A:1-221,A:270-352) Probab=23.26 E-value=31 Score=14.70 Aligned_cols=66 Identities=11% Similarity=0.092 Sum_probs=32.8 Q ss_pred CCCEEEEEECCCC-CCCHHHHHCCCCCCEEE--EECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHH Q ss_conf 9975999962678-99888851788662488--8624223457777753025788877672205766899981585389 Q gi|254780663|r 32 QKPKIMIISCCDS-RVAPETIFNAKPGELFV--VRNVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGG 107 (207) Q Consensus 32 q~P~~~vitC~Ds-Rv~~~~i~~~~~Gd~fv--~RnaGn~v~~~~~~~~~~~~~~sle~av~~l~v~~iiV~GHt~CGa 107 (207) +..++-++-|--- ....+.+.++..-|.-+ +--..++- .-...+-..+...+.+.|+++=.-|.-. T Consensus 96 ~~~~i~iiDtPGH~dF~~~~~~~l~~~D~ailVIdA~~Gv~----------~qT~~~l~~~~~~~~p~IV~INKiD~~~ 164 (304) T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVC----------VQTETVLRQALGERIKPVVVINKVDRAL 164 (304) T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSC----------HHHHHHHHHHHHTTCEEEEEEECHHHHH T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHCEEEEEEECCCCCC----------HHHHHHHHHHHHCCCCEEEEEECCCCCC T ss_conf 87599998599962259999999998785899996899946----------8699999999875989699997974699 No 64 >>2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE; 1.96A {Bacillus subtilis} (A:) Probab=23.18 E-value=46 Score=13.65 Aligned_cols=56 Identities=13% Similarity=0.093 Sum_probs=35.3 Q ss_pred CEEEEECCCC--CCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH Q ss_conf 2488862422--3457777753025788877672205766899981585389887530 Q gi|254780663|r 58 ELFVVRNVAN--IVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLD 113 (207) Q Consensus 58 d~fv~RnaGn--~v~~~~~~~~~~~~~~sle~av~~l~v~~iiV~GHt~CGav~aa~~ 113 (207) .++.+--.|. --.+.............++.-+..++.+.++++|||-=|.+...+. T Consensus 95 ~v~~~D~~G~G~S~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~lvGhS~Gg~ia~~~a 152 (306) T 2r11_A 95 RTYAVDIIGDKNKSIPENVSGTRTDYANWLLDVFDNLGIEKSHXIGLSLGGLHTXNFL 152 (306) T ss_dssp EEEEECCTTSSSSCEECSCCCCHHHHHHHHHHHHHHTTCSSEEEEEETHHHHHHHHHH T ss_pred EEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH T ss_conf 8999857645566544666788999988764122343102210012332323320234 No 65 >>2zf8_A MOTY, component of sodium-driven polar flagellar motor; beta barrel, 2-layer sandwich, flagellum, structural protein; 2.85A {Vibrio alginolyticus} (A:155-278) Probab=22.84 E-value=46 Score=13.61 Aligned_cols=15 Identities=7% Similarity=0.182 Sum_probs=12.5 Q ss_pred CCCEEEEEECCCHHH Q ss_conf 766899981585389 Q gi|254780663|r 93 NVEHIVVMGHGRCGG 107 (207) Q Consensus 93 ~v~~iiV~GHt~CGa 107 (207) +.+.|.|.||||..+ T Consensus 39 ~~~~I~I~Ghtd~~g 53 (124) T 2zf8_A 39 DIDLVLVATYTDSTD 53 (124) T ss_dssp SCCEEEEEEC----- T ss_pred CCCEEEEEEECCCCC T ss_conf 965899998748999 No 66 >>1k1x_A 4-alpha-glucanotransferase; 2.40A {Thermococcus litoralis} (A:1-88,A:178-264) Probab=22.30 E-value=33 Score=14.54 Aligned_cols=86 Identities=14% Similarity=0.028 Sum_probs=37.6 Q ss_pred CEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--CCHHHHHH Q ss_conf 6899981585389887530000134633101468988889999864016324687999999999999973--09788999 Q gi|254780663|r 95 EHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPTEKQTILEQLSIRNSLKNIR--NFPFVNKL 172 (207) Q Consensus 95 ~~iiV~GHt~CGav~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nV~~~v~~L~--~~p~i~~~ 172 (207) -.|.+++|+.+= .+.-.-...+......++....+..... .+............++... ....|+++ T Consensus 4 i~v~~v~HsH~D----------~g~w~~~~ee~~~k~~~~~l~ll~~~p~-~kF~~~~s~~llew~~~~~Pe~~~~lk~l 72 (175) T 1k1x_A 4 INFIFGIHNHQP----------LGNFGWVFEEAYNRSYRPFMEILEEFPE-MKVNVHFSGPLLEWIEENKPDYLDLLRSL 72 (175) T ss_dssp EEEEEEEEECCC----------TTCCHHHHHHHHHHTHHHHHHHHTTCTT-CCEEEEECHHHHHHHHHHCHHHHHHHHHH T ss_pred EEEEEEEECCCC----------CCCCHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEECHHHHHHHHHHCHHHHHHHHHH T ss_conf 999999976789----------9877389999999999999999985899-61999927999999997698999999999 Q ss_pred HHCCCCEEEEEEEECCCCE Q ss_conf 9779967999999889876 Q gi|254780663|r 173 EKEHMLQIHGAWFDISSGK 191 (207) Q Consensus 173 v~~g~l~I~G~~yDi~tG~ 191 (207) +++|++.+.|..|--.+.. T Consensus 73 v~~Gr~Eivgg~~ve~~~~ 91 (175) T 1k1x_A 73 IKRGQLEIVVAGFYEPDEK 91 (175) T ss_dssp HHTTCEEEEBCCTTCCCHH T ss_pred HHCCCEEEECCCCCCCCHH T ss_conf 9879989987764022721 No 67 >>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus HB8} (A:1-283) Probab=22.15 E-value=33 Score=14.55 Aligned_cols=65 Identities=15% Similarity=0.118 Sum_probs=31.2 Q ss_pred CCEEEEEECCCCCC-CHHHHHCCC--CCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHH Q ss_conf 97599996267899-888851788--6624888624223457777753025788877672205766899981585389 Q gi|254780663|r 33 KPKIMIISCCDSRV-APETIFNAK--PGELFVVRNVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGG 107 (207) Q Consensus 33 ~P~~~vitC~DsRv-~~~~i~~~~--~Gd~fv~RnaGn~v~~~~~~~~~~~~~~sle~av~~l~v~~iiV~GHt~CGa 107 (207) ..++.++-|--.+- ..+...++. -|=+||+--..++- .....+.......+.+.|+|+=.-|+-. T Consensus 76 ~~~~~~iDtPGh~df~~~~~~~l~~~D~ailVvda~~G~~----------~qt~~~~~~~~~~~~p~ii~iNKiD~~~ 143 (283) T 1dar_A 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVE----------PQSETVWRQAEKYKVPRIAFANKMDKTG 143 (283) T ss_dssp TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSC----------HHHHHHHHHHHHTTCCEEEEEECTTSTT T ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCC----------HHHHHHHHHHHHCCCCEEEEEECCCCCC T ss_conf 9899999298965318999999987186899997898862----------7799999999974998499986346455 No 68 >>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} (A:168-353) Probab=22.02 E-value=36 Score=14.29 Aligned_cols=11 Identities=18% Similarity=0.576 Sum_probs=4.1 Q ss_pred EEEEEECCCHH Q ss_conf 89998158538 Q gi|254780663|r 96 HIVVMGHGRCG 106 (207) Q Consensus 96 ~iiV~GHt~CG 106 (207) .|+++||+++| T Consensus 10 ~v~iiG~~~vG 20 (186) T 2hjg_A 10 QFCLIGRPNVG 20 (186) T ss_dssp EEEEECSTTSS T ss_pred EEEEECCCCCC T ss_conf 79998799988 No 69 >>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* (A:) Probab=21.99 E-value=36 Score=14.34 Aligned_cols=12 Identities=25% Similarity=0.534 Sum_probs=7.3 Q ss_pred CEEEEEECCCHH Q ss_conf 689998158538 Q gi|254780663|r 95 EHIVVMGHGRCG 106 (207) Q Consensus 95 ~~iiV~GHt~CG 106 (207) -.|+++||++|| T Consensus 4 ~kv~iiG~~~vG 15 (165) T 2wji_A 4 YEIALIGNPNVG 15 (165) T ss_dssp EEEEEECSTTSS T ss_pred EEEEEECCCCCC T ss_conf 199999899998 No 70 >>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* (A:172-364) Probab=21.90 E-value=40 Score=14.00 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=5.3 Q ss_pred CEEEEEECCCCC Q ss_conf 759999626789 Q gi|254780663|r 34 PKIMIISCCDSR 45 (207) Q Consensus 34 P~~~vitC~DsR 45 (207) +.++++|.+++. T Consensus 9 ~~V~iiG~~~vG 20 (193) T 2qtf_A 9 PSIGIVGYTNSG 20 (193) T ss_dssp CEEEEECBTTSS T ss_pred CEEEEEECCCCH T ss_conf 669998345401 No 71 >>1kez_A Erythronolide synthase; polyketide synthase, modular polyketide synthase, thioesterase, 6-DEB, TE, DEBS, alpha, beta-hydrolase; 2.80A {Saccharopolyspora erythraea} (A:) Probab=21.65 E-value=49 Score=13.45 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=28.8 Q ss_pred CHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH Q ss_conf 025788877672205766899981585389887530 Q gi|254780663|r 78 HHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLD 113 (207) Q Consensus 78 ~~~~~~sle~av~~l~v~~iiV~GHt~CGav~aa~~ 113 (207) .......+...+..++.+.++++|||-.|++...+. T Consensus 117 ~~~~~~~~~~~l~~l~~~~~~lvG~S~Gg~~a~~~a 152 (300) T 1kez_A 117 AAVAAVQADAVIRTQGDKPFVVAGHSAGALMAYALA 152 (300) T ss_dssp HHHHHHHHHHHHHHCSSCCEEEECCTHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHH T ss_conf 999999999999857999889999774079999999 No 72 >>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY, TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo sapiens} (A:) Probab=21.41 E-value=49 Score=13.42 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=21.1 Q ss_pred CCEEEEEEEECCCCEEEEEECCCC Q ss_conf 967999999889876999846888 Q gi|254780663|r 177 MLQIHGAWFDISSGKLWILDPTSN 200 (207) Q Consensus 177 ~l~I~G~~yDi~tG~v~~l~~~~~ 200 (207) ....+|...|.+.|.|.|+|.+++ T Consensus 132 ~~~rvGV~LD~e~G~lsFy~v~~~ 155 (193) T 3kb5_A 132 RPTRIGLYLSFGDGVLSFYDASDA 155 (193) T ss_dssp CCSEEEEEEETTTTEEEEEECCST T ss_pred CCCEEEEEEECCCCEEEEEECCCC T ss_conf 988999998778999999957588 No 73 >>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} (A:1-277) Probab=21.32 E-value=38 Score=14.14 Aligned_cols=13 Identities=8% Similarity=0.041 Sum_probs=5.7 Q ss_pred EEEEECCCCCCCH Q ss_conf 9999626789988 Q gi|254780663|r 36 IMIISCCDSRVAP 48 (207) Q Consensus 36 ~~vitC~DsRv~~ 48 (207) ++|+.|.+...+. T Consensus 102 ilVvda~~g~~~q 114 (277) T 2dy1_A 102 LVAVSAEAGVQVG 114 (277) T ss_dssp EEEEETTTCSCHH T ss_pred EEEEECCCCCCHH T ss_conf 9999789886277 No 74 >>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} (A:332-428,A:499-582) Probab=21.29 E-value=43 Score=13.84 Aligned_cols=106 Identities=6% Similarity=0.063 Sum_probs=46.6 Q ss_pred HCCCCCEEEEEECCCHHHHHHHHHHHCCCCCC-CC--CHH-HHHH--HHHHHHHH-------------HHHCCCHHHHHH Q ss_conf 20576689998158538988753000013463-31--014-6898--88899998-------------640163246879 Q gi|254780663|r 90 QGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSP-GD--FIG-KWMD--IVRPIAQK-------------IVANNPTEKQTI 150 (207) Q Consensus 90 ~~l~v~~iiV~GHt~CGav~aa~~~~~~~~~~-~~--~~~-~~~~--~~~~~~~~-------------~~~~~~~~~~~~ 150 (207) ..-.-+.+.|+|+++||=-+.+ ........+ .+ ++. .-+. ..+..... +--+.|....+. T Consensus 34 ~i~~Ge~vaivG~sGsGKSTll-~~l~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LP~ililDEPts~LD~ 112 (181) T 3b60_A 34 KIPAGKTVALVGRSGSGKSTIA-SLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLSPILILDEATSALDT 112 (181) T ss_dssp EECTTCEEEEEECTTSSHHHHH-HHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSEEEEETTTSSCCH T ss_pred EECCCEEEEEECCCCCCHHHHH-HHHHCCCCCCCEEEEECCEECCCCCHHHHHHHEEEEECCCEECCEEEEECCCCCCCH T ss_conf 9837859999899998799999-998177668970899999984408999997438999257875998999797557998 Q ss_pred HHHHHHHHHHHHHHCC-HHH--HHHHHCCCCEEEEEEEECCCCEEEEEECC Q ss_conf 9999999999997309-788--99997799679999998898769998468 Q gi|254780663|r 151 LEQLSIRNSLKNIRNF-PFV--NKLEKEHMLQIHGAWFDISSGKLWILDPT 198 (207) Q Consensus 151 l~~~nV~~~v~~L~~~-p~i--~~~v~~g~l~I~G~~yDi~tG~v~~l~~~ 198 (207) ..+..+.+.+..+.+. .+| .-.+. .+...--++-++.|++.....- T Consensus 113 ~~~~~i~~~l~~l~~~~Tvi~vtH~l~--~~~~~Dri~vl~~G~i~~~g~~ 161 (181) T 3b60_A 113 ESERAIQAALDELQKNRTSLVIAHRLS--TIEQADEIVVVEDGIIVERGTH 161 (181) T ss_dssp HHHHHHHHHHHHHHTTSEEEEECSCGG--GTTTCSEEEEEETTEEEEEECH T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCHH--HHHHCCEEEEEECCEEEEECCH T ss_conf 999999999999759998999928999--9986999999989999998788 No 75 >>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome assembly, GTP-binding; HET: GNP; 1.90A {Aquifex aeolicus} (A:1-190,A:295-308) Probab=20.51 E-value=35 Score=14.37 Aligned_cols=25 Identities=20% Similarity=0.053 Sum_probs=15.1 Q ss_pred HHHHHHHHHCCCCCEEEEEECCCHH Q ss_conf 8887767220576689998158538 Q gi|254780663|r 82 SAAIEFAVQGLNVEHIVVMGHGRCG 106 (207) Q Consensus 82 ~~sle~av~~l~v~~iiV~GHt~CG 106 (207) ...+++.....+.+.++|+-..|-. T Consensus 111 ~~~~~~~~~~~~~~~i~v~nK~D~~ 135 (204) T 3iev_A 111 EEIYQNFIKPLNKPVIVVINKIDKI 135 (204) T ss_dssp HHHHHHHTGGGCCCEEEEEECGGGS T ss_pred HHHHHHHHHHCCCCEEEEEEECCCC T ss_conf 8999999998399889999701444 No 76 >>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} (A:) Probab=20.37 E-value=43 Score=13.79 Aligned_cols=14 Identities=21% Similarity=0.432 Sum_probs=9.9 Q ss_pred CCEEEEEECCCHHH Q ss_conf 66899981585389 Q gi|254780663|r 94 VEHIVVMGHGRCGG 107 (207) Q Consensus 94 v~~iiV~GHt~CGa 107 (207) ...|+++||+++|= T Consensus 4 ~~kI~iiG~~~vGK 17 (172) T 2gj8_A 4 GXKVVIAGRPNAGK 17 (172) T ss_dssp CEEEEEEESTTSSH T ss_pred CCEEEEECCCCCCH T ss_conf 76899999999989 No 77 >>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} (A:1-81) Probab=20.34 E-value=40 Score=13.99 Aligned_cols=20 Identities=35% Similarity=0.481 Sum_probs=14.2 Q ss_pred EECCCCCCCHHHHHCCCCCCEEEEECC Q ss_conf 962678998888517886624888624 Q gi|254780663|r 39 ISCCDSRVAPETIFNAKPGELFVVRNV 65 (207) Q Consensus 39 itC~DsRv~~~~i~~~~~Gd~fv~Rna 65 (207) ==|.||| ...+|++|+-..- T Consensus 26 ~i~~DSR-------~v~~g~lFval~G 45 (81) T 1gg4_A 26 AVTTDTR-------KLTPGCLFVALKG 45 (81) T ss_dssp CEESCGG-------GCCTTCEEECCBC T ss_pred EEEECCC-------CCCCCCEEEEECC T ss_conf 4796267-------7788989999377 No 78 >>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} (A:69-265) Probab=20.13 E-value=45 Score=13.72 Aligned_cols=62 Identities=10% Similarity=0.093 Sum_probs=33.0 Q ss_pred CEEEEEECCCC---CCC-HHHHHC--CCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCH Q ss_conf 75999962678---998-888517--8866248886242234577777530257888776722057668999815853 Q gi|254780663|r 34 PKIMIISCCDS---RVA-PETIFN--AKPGELFVVRNVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRC 105 (207) Q Consensus 34 P~~~vitC~Ds---Rv~-~~~i~~--~~~Gd~fv~RnaGn~v~~~~~~~~~~~~~~sle~av~~l~v~~iiV~GHt~C 105 (207) +.+.++-+..- .-. .+.+.. ..-++++++......- ....-..--+...+.+.|+|+-+-|. T Consensus 52 ~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~lv~~~~~~~~----------~~~~~~~~~l~~~~~p~ivv~NK~D~ 119 (197) T 1tq4_A 52 PNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFK----------KNDIDIAKAISMMKKEFYFVRTKVDS 119 (197) T ss_dssp TTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCC----------HHHHHHHHHHHHTTCEEEEEECCHHH T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCC----------HHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 876999788887444349999998775417689997588887----------78999999999739988999758764 No 79 >>1l2t_A Hypothetical ABC transporter ATP-binding protein MJ0796; ABC transporters, ATPase, walker-A, NBD, transport protein; HET: ATP; 1.90A {Methanocaldococcus jannaschii} (A:) Probab=20.03 E-value=44 Score=13.73 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=10.1 Q ss_pred CCCCEEEEEECCCHHH Q ss_conf 5766899981585389 Q gi|254780663|r 92 LNVEHIVVMGHGRCGG 107 (207) Q Consensus 92 l~v~~iiV~GHt~CGa 107 (207) -.-+.+.|+|+|+||= T Consensus 29 ~~Ge~vaiiGpSGsGK 44 (235) T 1l2t_A 29 KEGEFVSIMGPSGSGK 44 (235) T ss_dssp CTTCEEEEECSTTSSH T ss_pred CCCCEEEEECCCCCCH T ss_conf 7998999999999819 Done!