Query gi|254780663|ref|YP_003065076.1| carbonate dehydratase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 207 No_of_seqs 125 out of 2127 Neff 7.8 Searched_HMMs 23785 Date Tue May 31 18:01:32 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780663.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1ekj_A Beta-carbonic anhydrase 100.0 0 0 381.5 23.2 201 5-206 14-220 (221) 2 2w3q_A Carbonic anhydrase 2; l 100.0 0 0 370.0 20.4 195 4-204 33-235 (243) 3 1i6p_A Carbonic anhydrase; met 100.0 0 0 373.5 16.7 195 1-206 1-202 (220) 4 1ym3_A Carbonic anhydrase (car 100.0 0 0 367.5 19.8 190 5-203 18-213 (215) 5 1ddz_A Carbonic anhydrase; alp 100.0 0 0 367.8 19.2 188 5-202 36-231 (496) 6 3eyx_A Carbonic anhydrase; ros 100.0 0 0 364.4 18.5 194 1-200 9-212 (216) 7 3e3i_A Carbonic anhydrase 2, b 100.0 0 0 361.9 19.2 193 1-204 1-200 (229) 8 1ddz_A Carbonic anhydrase; alp 100.0 0 0 354.1 17.8 191 5-205 290-488 (496) 9 1ylk_A Hypothetical protein RV 100.0 3.6E-44 0 305.5 11.5 163 2-197 10-172 (172) 10 1g5c_A Beta-carbonic anhydrase 100.0 1.8E-43 0 301.0 9.1 166 4-198 2-169 (170) 11 2hwk_A Helicase NSP2; rossman 77.2 1.5 6.5E-05 22.2 3.0 31 164-200 101-131 (320) 12 1vkh_A Putative serine hydrola 58.6 8.6 0.00036 17.4 4.1 37 77-113 96-132 (273) 13 2vh7_A Acylphosphatase-1; hydr 48.6 11 0.00045 16.7 2.8 19 177-195 33-51 (99) 14 3d89_A Rieske domain-containin 45.5 7.3 0.00031 17.8 1.6 17 179-195 81-97 (157) 15 1ulr_A Putative acylphosphatas 44.8 13 0.00056 16.1 2.8 19 177-195 27-45 (88) 16 2fhm_A Probable acylphosphatas 43.9 14 0.00059 16.0 2.8 19 177-195 27-45 (91) 17 1w2i_A Acylphosphatase; hydrol 42.8 13 0.00053 16.3 2.5 19 177-195 29-47 (91) 18 1y5e_A Molybdenum cofactor bio 41.4 5.8 0.00024 18.5 0.6 75 31-107 11-86 (169) 19 2wyh_A Alpha-mannosidase; hydr 40.0 6.8 0.00029 18.0 0.7 13 3-15 121-133 (923) 20 2bjd_A Acylphosphatase; hypert 39.9 17 0.00071 15.5 2.8 19 177-195 39-57 (101) 21 1aps_A Acylphosphatase; hydrol 39.6 13 0.00054 16.2 2.1 19 177-195 32-50 (98) 22 1urr_A CG18505 protein; acylph 37.7 17 0.00072 15.4 2.5 19 177-195 36-54 (102) 23 2jo6_A Nitrite reductase [NAD( 35.4 7.7 0.00032 17.7 0.4 14 179-192 74-87 (113) 24 1brt_A Bromoperoxidase A2; hal 35.0 20 0.00084 15.0 3.1 30 80-109 75-105 (277) 25 2h5e_A Peptide chain release f 32.9 12 0.00052 16.4 1.1 20 25-44 127-146 (529) 26 1gxu_A Hydrogenase maturation 32.7 14 0.00058 16.0 1.3 23 178-200 33-55 (91) 27 3dqy_A Toluene 1,2-dioxygenase 31.8 7.8 0.00033 17.6 -0.1 17 178-194 61-77 (106) 28 1fqt_A Rieske-type ferredoxin 31.4 8.9 0.00037 17.3 0.2 18 178-195 66-83 (112) 29 2gv1_A Probable acylphosphatas 31.3 12 0.00053 16.3 0.9 18 178-195 30-47 (92) 30 3lvt_A Glycosyl hydrolase, fam 30.1 11 0.00047 16.6 0.5 14 3-17 102-115 (899) 31 3c0d_A Putative nitrite reduct 30.0 7.3 0.00031 17.8 -0.5 12 181-192 74-85 (119) 32 1a88_A Chloroperoxidase L; hal 28.8 25 0.0011 14.3 3.0 79 32-111 20-104 (275) 33 1mkz_A Molybdenum cofactor bio 28.4 15 0.00065 15.7 1.0 67 32-107 9-83 (172) 34 1vm9_A Toluene-4-monooxygenase 28.3 8.1 0.00034 17.5 -0.5 15 178-192 63-77 (111) 35 2qpz_A Naphthalene 1,2-dioxyge 27.8 9.1 0.00038 17.2 -0.3 18 178-195 63-80 (103) 36 2i7f_A Ferredoxin component of 27.4 6.9 0.00029 18.0 -0.9 15 179-193 65-79 (108) 37 1f60_A Elongation factor EEF1A 27.2 18 0.00077 15.2 1.2 58 41-100 93-151 (458) 38 2jza_A Nitrite reductase [NAD( 26.3 9.5 0.0004 17.1 -0.4 11 181-191 73-83 (130) 39 1svi_A GTP-binding protein YSX 26.3 23 0.00097 14.6 1.6 16 31-46 21-36 (195) 40 3gce_A Ferredoxin component of 26.2 11 0.00047 16.6 -0.1 17 178-194 72-88 (121) 41 2de6_D Ferredoxin component of 25.1 12 0.0005 16.4 -0.1 15 179-193 66-80 (115) 42 3d7r_A Esterase; alpha/beta fo 24.1 31 0.0013 13.8 2.1 35 78-112 147-181 (326) 43 1ukf_A Avirulence protein AVRP 24.0 31 0.0013 13.8 3.4 27 181-207 132-158 (188) 44 3ihk_A Thiamin pyrophosphokina 23.9 31 0.0013 13.7 4.8 67 30-106 35-101 (218) 45 3bvx_A Alpha-mannosidase 2; fa 23.9 13 0.00057 16.1 0.0 15 3-17 177-191 (1045) 46 1g7s_A Translation initiation 22.7 19 0.0008 15.1 0.6 65 32-104 68-133 (594) 47 3o4h_A Acylamino-acid-releasin 22.2 33 0.0014 13.5 3.5 34 79-112 421-454 (582) 48 1zo0_A ODC-AZ, ornithine decar 21.3 35 0.0015 13.4 2.2 63 41-107 24-89 (126) 49 1gz0_A Hypothetical tRNA/RRNA 20.8 36 0.0015 13.3 4.7 71 21-105 64-142 (253) 50 3kxp_A Alpha-(N-acetylaminomet 20.2 37 0.0015 13.3 3.1 35 79-113 118-152 (314) 51 3iij_A Coilin-interacting nucl 20.2 30 0.0013 13.8 1.2 11 96-106 13-23 (180) 52 1r5b_A Eukaryotic peptide chai 20.1 33 0.0014 13.5 1.4 58 44-105 132-193 (467) No 1 >1ekj_A Beta-carbonic anhydrase; rossman fold domain, strand exchange, lyase; HET: CIT; 1.93A {Pisum sativum} SCOP: c.53.2.1 Probab=100.00 E-value=0 Score=381.51 Aligned_cols=201 Identities=35% Similarity=0.598 Sum_probs=180.6 Q ss_pred HHHHHHHHHHHHHCCC--CHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHH Q ss_conf 9999999999970687--98899986238997599996267899888851788662488862422345777775302578 Q gi|254780663|r 5 PNTLLERHREFIQDQY--DKKLFQELANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHATS 82 (207) Q Consensus 5 ~~~Ll~~N~~f~~~~~--~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fv~RnaGn~v~~~~~~~~~~~~~ 82 (207) +++|++||++|+++.+ +|++|++|++||+|+++||||||||++||.+||++|||+||+||+||+|+|++.. ...+++ T Consensus 14 ~e~L~~G~~~f~~~~~~~~~~~~~~la~gQ~P~~~vi~CsDSRv~pe~i~~~~~GdlfvvRNaGN~v~~~d~~-~~~~~~ 92 (221) T 1ekj_A 14 SERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANLVPPYDQA-KYAGTG 92 (221) T ss_dssp HHHHHHHHHHHHHHTTTSCHHHHHHHTTCCCCSEEEEEECCGGGCHHHHSCCCTTSEEEEEEGGGCCCCSCTT-TCHHHH T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCC-CCCHHH T ss_conf 9999999999985766328899999856899846999513658888997278997579986555567976655-431056 Q ss_pred HHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHH Q ss_conf 887767220576689998158538988753000013463310146898888999986401----6324687999999999 Q gi|254780663|r 83 AAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVAN----NPTEKQTILEQLSIRN 158 (207) Q Consensus 83 ~sle~av~~l~v~~iiV~GHt~CGav~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~nV~~ 158 (207) ++||||+.+||+++|||||||+||||+++++.........+++..|+..+++........ ...+..+.+++.||+. T Consensus 93 asleyAv~~L~v~~IvV~GHs~CGav~aa~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~ 172 (221) T 1ekj_A 93 AAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYSTDFIEEWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVNA 172 (221) T ss_dssp HHHHHHHHTSCCSEEEEEEESSCHHHHHHHHCCCSSCCCSSSHHHHHGGGHHHHHHHHHHSTTSCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH T ss_conf 88998886049507999658873478887754422676731578888851779999875415785788988999999999 Q ss_pred HHHHHHCCHHHHHHHHCCCCEEEEEEEECCCCEEEEEECCCCEEEECC Q ss_conf 999973097889999779967999999889876999846888258335 Q gi|254780663|r 159 SLKNIRNFPFVNKLEKEHMLQIHGAWFDISSGKLWILDPTSNEFTCDT 206 (207) Q Consensus 159 ~v~~L~~~p~i~~~v~~g~l~I~G~~yDi~tG~v~~l~~~~~~F~~~~ 206 (207) |+++|++||+|++++++|+|.|||||||++||+|++|+.+.+.+...| T Consensus 173 qv~~L~~~p~I~~~v~~g~l~I~G~~YDi~tG~V~~~~~e~g~~~~~~ 220 (221) T 1ekj_A 173 SLGNLLTYPFVREGLVNKTLALKGGYYDFVKGSFELWGLEFGLSSTFS 220 (221) T ss_dssp HHHHHTTSHHHHHHHHTTSCEEEEEEEETTTTEEEEEEECCCCCCCCC T ss_pred HHHHHHCCHHHHHHHHCCCCEEEEEEEECCCCEEEEEECCCCCCCCCC T ss_conf 999997098999999869948999999878977999824568877876 No 2 >2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A {Cryptococcus neoformans} PDB: 2w3n_A Probab=100.00 E-value=0 Score=370.04 Aligned_cols=195 Identities=26% Similarity=0.409 Sum_probs=169.2 Q ss_pred HHHHHHHHHHHHHHCCC--CHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHH Q ss_conf 69999999999970687--9889998623899759999626789988885178866248886242234577777530257 Q gi|254780663|r 4 FPNTLLERHREFIQDQY--DKKLFQELANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHAT 81 (207) Q Consensus 4 ~~~~Ll~~N~~f~~~~~--~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fv~RnaGn~v~~~~~~~~~~~~ 81 (207) -+++|++||++|+++.+ +|++|++|++||+|+++||||||||++||.+||+.|||+||+||+||+|+|. +.++ T Consensus 33 ~l~~Ll~gN~~f~~~~~~~~~~~f~~la~gQ~P~~lvi~CsDSRv~pe~i~~~~~GdlFVvRNaGN~v~~~-----d~~~ 107 (243) T 2w3q_A 33 EIREVLEGNRYWARKVTSEEPEFMAEQVKGQAPNFLWIGCADSRVPEVTIMARKPGDVFVQRNVANQFKPE-----DDSS 107 (243) T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCSEEEEEECCTTCCHHHHTTCCTTSEEEEEEGGGCCCTT-----CHHH T ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCEEEEEECCCCCCHHHHCCCCCCCEEEEEECCCCCCCC-----CCCH T ss_conf 99999999999997412109789998737999976999775879899997089995379986016714777-----7626 Q ss_pred HHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 88877672205766899981585389887530000134633101468988889999864016324687999999999999 Q gi|254780663|r 82 SAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPTEKQTILEQLSIRNSLK 161 (207) Q Consensus 82 ~~sle~av~~l~v~~iiV~GHt~CGav~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nV~~~v~ 161 (207) +++||||+.+|||++|||||||+||||+|+++...... ..++...|...+++..............+.++++||+.|++ T Consensus 108 ~asleyAv~~L~v~~IvVlGHt~CGav~Aa~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~NV~~qv~ 186 (243) T 2w3q_A 108 QALLNYAIMNVGVTHVMVVGHTGCGGCIAAFDQPLPTE-ENPGGTPLVRYLEPIIRLKHSLPEGSDVNDLIKENVKMAVK 186 (243) T ss_dssp HHHHHHHHHTTCCCEEEEEEETTCHHHHHHHTCCCC------CCSHHHHHTHHHHHHHHHSCTTCCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH T ss_conf 89999999854977799925877348999873313445-57762169999999999874274465665899999999999 Q ss_pred HHHCCHHHHHHHHCC------CCEEEEEEEECCCCEEEEEECCCCEEEE Q ss_conf 973097889999779------9679999998898769998468882583 Q gi|254780663|r 162 NIRNFPFVNKLEKEH------MLQIHGAWFDISSGKLWILDPTSNEFTC 204 (207) Q Consensus 162 ~L~~~p~i~~~v~~g------~l~I~G~~yDi~tG~v~~l~~~~~~F~~ 204 (207) +|+++|+|+++++.+ +|.|||||||++||+|++||.+++.|.- T Consensus 187 ~L~~~p~I~~a~~~~~~~~~~~l~VhG~vYDi~TG~V~~Ld~~~g~~~~ 235 (243) T 2w3q_A 187 NVVNSPTIQGAWEQARKGEFREVFVHGWLYDLSTGNIVDLNVTQGPHPF 235 (243) T ss_dssp HHHTSHHHHHHHHHHHTTSSCCCEEEEEEEETTTTEEEECSCCBCSCC- T ss_pred HHHCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEECCCCCCCCC T ss_conf 9970989999998543167884289999998899669884788788865 No 3 >1i6p_A Carbonic anhydrase; metalloenzyme, zinc coordination, PH- dependent activity, MAD phasing, lyase; 2.00A {Escherichia coli} SCOP: c.53.2.1 PDB: 1i6o_A 1t75_A 2esf_A Probab=100.00 E-value=0 Score=373.46 Aligned_cols=195 Identities=31% Similarity=0.477 Sum_probs=168.7 Q ss_pred CCHHHHHHHHHHHHHHHCC--CCHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCC Q ss_conf 9746999999999997068--79889998623899759999626789988885178866248886242234577777530 Q gi|254780663|r 1 MTSFPNTLLERHREFIQDQ--YDKKLFQELANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQH 78 (207) Q Consensus 1 M~~~~~~Ll~~N~~f~~~~--~~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fv~RnaGn~v~~~~~~~~~ 78 (207) |+.+ ++|++||++|+++. .+|++|++|++||+|+++||||||||++|+.+||++|||+||+||+||+|+|.+ T Consensus 1 M~~l-~~Ll~gN~~f~~~~~~~~~~~~~~la~gQ~P~~~vi~CsDSRv~pe~if~~~~GdlFvvRNaGn~v~~~d----- 74 (220) T 1i6p_A 1 MKDI-DTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTD----- 74 (220) T ss_dssp -CCH-HHHHHHHHHHHHHHHTTCTTTTHHHHSCCCCSEEEEEETTCSSCHHHHHCCCTTSEEEEEETTCCCCTTC----- T ss_pred CCHH-HHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHCCCCCCCEEEEECCCCCCCCCC----- T ss_conf 9449-9999999999986132096899986068999559995437798988955999964688850456669853----- Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH----HHCCCHHHHHHHHHH Q ss_conf 2578887767220576689998158538988753000013463310146898888999986----401632468799999 Q gi|254780663|r 79 HATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKI----VANNPTEKQTILEQL 154 (207) Q Consensus 79 ~~~~~sle~av~~l~v~~iiV~GHt~CGav~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~ 154 (207) .++++|||||+.+|+|++|||||||+||||+++++.... +....|....++..... .........+.+++. T Consensus 75 ~~~~asleyav~~L~v~~IvV~GHt~CGav~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (220) T 1i6p_A 75 LNCLSVVQYAVDVLEVEHIIICGHYGCGGVQAAVENPEL-----GLINNWLLHIRDIWFKHSSLLGEMPQERRLDTLCEL 149 (220) T ss_dssp HHHHHHHHHHHHTSCCSEEEEEEETTCHHHHHHHHCCCC-----STHHHHHHHHHHHHHHTHHHHTTSCGGGHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCCC-----CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 237899999999708877999758775066653305545-----553035554489999987651236657788899999 Q ss_pred HHHHHHHHHHCCHHHHHHHHCC-CCEEEEEEEECCCCEEEEEECCCCEEEECC Q ss_conf 9999999973097889999779-967999999889876999846888258335 Q gi|254780663|r 155 SIRNSLKNIRNFPFVNKLEKEH-MLQIHGAWFDISSGKLWILDPTSNEFTCDT 206 (207) Q Consensus 155 nV~~~v~~L~~~p~i~~~v~~g-~l~I~G~~yDi~tG~v~~l~~~~~~F~~~~ 206 (207) ||+.|+++|+++|+|++++.++ +|.|||||||++||+|++|+.+++.||..+ T Consensus 150 nV~~qv~~L~~~p~i~~~~~~~~~l~vhG~~ydi~tG~v~~ld~~~~~~e~l~ 202 (220) T 1i6p_A 150 NVMEQVYNLGHSTIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVTATNRETLE 202 (220) T ss_dssp HHHHHHHHHHHSHHHHHHHHTTCCCEEEEEEECTTTCCEEECSCCBSSHHHHH T ss_pred HHHHHHHHHHCCHHHHHHHHCCCCCEEEEEEEECCCCEEEEECCCCCCCCCHH T ss_conf 99999999741939899998299548999999868856999528898734278 No 4 >1ym3_A Carbonic anhydrase (carbonate dehydratase) (carbonic dehydratase); Zn protein, structural proteomics in europe, spine; 1.75A {Mycobacterium tuberculosis H37RV} PDB: 2a5v_A Probab=100.00 E-value=0 Score=367.55 Aligned_cols=190 Identities=28% Similarity=0.421 Sum_probs=171.5 Q ss_pred HHHHHHHHHHHHHCCC-----CHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCH Q ss_conf 9999999999970687-----98899986238997599996267899888851788662488862422345777775302 Q gi|254780663|r 5 PNTLLERHREFIQDQY-----DKKLFQELANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHH 79 (207) Q Consensus 5 ~~~Ll~~N~~f~~~~~-----~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fv~RnaGn~v~~~~~~~~~~ 79 (207) +++|++||+||++++. .++.+++|++||+|+++||||||||++||.+||++|||+||+||+||+|+ . T Consensus 18 ~~~L~~GN~rF~~~~~~~~~~~~~~~~~la~gQ~P~a~vi~CsDSRv~pe~if~~~~GdlfvvRnaGn~v~--------~ 89 (215) T 1ym3_A 18 WKALKEGNERFVAGRPQHPSQSVDHRAGLAAGQKPTAVIFGCADSRVAAEIIFDQGLGDMFVVRTAGHVID--------S 89 (215) T ss_dssp HHHHHHHHHHHHHTCCSSGGGC----------CCCSEEEEEETTCSSCHHHHTTCCTTSEEEEEEGGGCCC--------H T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCEEEEEECCCCCC--------H T ss_conf 99999999999839766855488999974058998469993247797778753799863799830455568--------6 Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 57888776722057668999815853898875300001346331014689888899998640163246879999999999 Q gi|254780663|r 80 ATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPTEKQTILEQLSIRNS 159 (207) Q Consensus 80 ~~~~sle~av~~l~v~~iiV~GHt~CGav~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nV~~~ 159 (207) ++++|||||+.+|+|++|||||||+||||+++++.......+.++++.|++.++++..... .++.+..+.++++||+.| T Consensus 90 ~~~~sleyAv~~L~v~~IvV~GHt~CGav~Aa~~~~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~~~~~~~~~NV~~~ 168 (215) T 1ym3_A 90 AVLGSIEYAVTVLNVPLIVVLGHDSCGAVNAALAAINDGTLPGGYVRDVVERVAPSVLLGR-RDGLSRVDEFEQRHVHET 168 (215) T ss_dssp HHHHHHHHHHHTSCCCEEEEEEESSCHHHHHHHHHHHHTSCCSTTHHHHHHHHHHHHHHHH-HTTCCSHHHHHHHHHHHH T ss_pred HHHHEEEEEHHCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHH T ss_conf 5530115401106867899957964135587662100267750168899998748987643-024014418999999999 Q ss_pred HHHHHC-CHHHHHHHHCCCCEEEEEEEECCCCEEEEEECCCCEEE Q ss_conf 999730-97889999779967999999889876999846888258 Q gi|254780663|r 160 LKNIRN-FPFVNKLEKEHMLQIHGAWFDISSGKLWILDPTSNEFT 203 (207) Q Consensus 160 v~~L~~-~p~i~~~v~~g~l~I~G~~yDi~tG~v~~l~~~~~~F~ 203 (207) +++|++ ||+|++++++|+|.|||||||++||+|+++|...+-|| T Consensus 169 v~~L~~~~p~i~~~v~~g~l~IhG~~Ydi~TG~V~~~d~~~~~~e 213 (215) T 1ym3_A 169 VAILMARSSAISERIAGGSLAIVGVTYQLDDGRAVLRDHIGNIGE 213 (215) T ss_dssp HHHHHHHCHHHHHHHHHTSCEEEEEEECTTTCCCEEEEEESCCSC T ss_pred HHHHHHCCHHHHHHHHCCCCEEEEEEEECCCCEEEEEECCCCCCC T ss_conf 999975799999999889958999999878817999978875478 No 5 >1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Probab=100.00 E-value=0 Score=367.77 Aligned_cols=188 Identities=28% Similarity=0.464 Sum_probs=164.8 Q ss_pred HHHHHHHHHHHHHCC--CCHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHH Q ss_conf 999999999997068--798899986238997599996267899888851788662488862422345777775302578 Q gi|254780663|r 5 PNTLLERHREFIQDQ--YDKKLFQELANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHATS 82 (207) Q Consensus 5 ~~~Ll~~N~~f~~~~--~~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fv~RnaGn~v~~~~~~~~~~~~~ 82 (207) +++|++||++|+++. .+|++|++|++||+|+++|||||||||+||.+||++|||+||+||+||+|++. +.+++ T Consensus 36 ~~~l~~~N~~~~~~~~~~~p~~f~~la~gQ~P~~lvi~CsDSRV~pe~if~~~pGdlFVvRNaGN~v~~~-----d~~~~ 110 (496) T 1ddz_A 36 KSNIFANNEAWRQEMLKQDPEFFNRLANGQSPEYLWIGCADSRVPANQLLDLPAGEVFVHRNIANQCIHS-----DISFL 110 (496) T ss_dssp SSHHHHHHHHHHHHHHHHCTTHHHHHHTCCCCSEEEEEETTCSSCHHHHTTCCTTSEEEEEEGGGCCCTT-----CHHHH T ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHCCCCCCEEEEEECCCCCCCC-----CCHHH T ss_conf 9999999999997413329799998627999976999866879899998199998779987138878886-----51378 Q ss_pred HHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHH Q ss_conf 887767220576689998158538988753000013463310146898888999986401-----632468799999999 Q gi|254780663|r 83 AAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVAN-----NPTEKQTILEQLSIR 157 (207) Q Consensus 83 ~sle~av~~l~v~~iiV~GHt~CGav~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~nV~ 157 (207) +|||||+.+|||++|||||||+||||+++++... .+.+..|+..++++....... +..++.+.++++||+ T Consensus 111 asleyAv~~L~v~~IVV~GHt~CGav~aa~~~~~-----~~~~~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~l~e~NV~ 185 (496) T 1ddz_A 111 SVLQYAVQYLKVKHILVCGHYGCGGAKAALGDSR-----LGLIDNWLRHIRDVRRMNAKYLDKCKDGDEELNRLIELNVL 185 (496) T ss_dssp HHHHHHHHTSCCSEEEEEEETTCHHHHHHHHCCC-----CTHHHHHHHHHHHHHHHTHHHHTTCSSHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCC-----CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH T ss_conf 9999999971886799916888841776530554-----42478899988999998776530148978999999999999 Q ss_pred HHHHHHHCCHHHHHHHHCC-CCEEEEEEEECCCCEEEEEECCCCEE Q ss_conf 9999973097889999779-96799999988987699984688825 Q gi|254780663|r 158 NSLKNIRNFPFVNKLEKEH-MLQIHGAWFDISSGKLWILDPTSNEF 202 (207) Q Consensus 158 ~~v~~L~~~p~i~~~v~~g-~l~I~G~~yDi~tG~v~~l~~~~~~F 202 (207) .|+++|+++|+|++++++| +|.|||||||++||+|++|+...+.. T Consensus 186 ~qv~~L~~~p~v~~~~~~g~~l~IhG~vYdi~tG~v~~L~~~~~~~ 231 (496) T 1ddz_A 186 EQVHNVCATSIVQDAWDAGQELTVQGVVYGVGDGKLRDLGVVVNSS 231 (496) T ss_dssp HHHHHHHHSHHHHHHHHTTCCCEEEEEEECTTTTCCEEEEEESCCC T ss_pred HHHHHHHCCHHHHHHHHCCCCCEEEEEEEECCCCEEEECCCCCCCH T ss_conf 9999986398989999769953899999977970699766877885 No 6 >3eyx_A Carbonic anhydrase; rossmann fold, cytoplasm, lyase, metal-binding, nucleus, zinc; 2.04A {Saccharomyces cerevisiae} Probab=100.00 E-value=0 Score=364.38 Aligned_cols=194 Identities=24% Similarity=0.430 Sum_probs=165.7 Q ss_pred CCHHHHHHHHHHHHHHHCCC--CHHHHHHH-HCCCCCEEEEEECCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCC Q ss_conf 97469999999999970687--98899986-2389975999962678998888517886624888624223457777753 Q gi|254780663|r 1 MTSFPNTLLERHREFIQDQY--DKKLFQEL-ANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQ 77 (207) Q Consensus 1 M~~~~~~Ll~~N~~f~~~~~--~~~~~~~l-~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fv~RnaGn~v~~~~~~~~ 77 (207) +++-+++|++||++|+++.. +|++|+++ ++||+|+++|||||||||+|+ +||++|||+||+|||||+|++. T Consensus 9 ~~~~l~~Ll~gN~~f~~~~~~~~p~~~~~~~a~gQ~P~~~vi~C~DSRv~~~-i~~~~~GdlfvvRnaGn~v~~~----- 82 (216) T 3eyx_A 9 HNSNLQDILAANAKWASQMNNIQPTLFPDHNAKGQSPHTLFIGCSDSRYNEN-CLGVLPGEVFTWKNVANICHSE----- 82 (216) T ss_dssp ---CHHHHHHHHHHHHHHHHHHCGGGC--------CCSEEEEEECCTTCCGG-GGCCCTTSEEEEEEGGGCCCTT----- T ss_pred CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEEEECCCCCCHH-HHCCCCCCEEEEECCCCCCCCC----- T ss_conf 5059999999999999740210857789987479998579997528896978-9579997578972346767887----- Q ss_pred CHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCC--CCCCHHHHHHHHHHHHHHHHH-----CCCHHHHHH Q ss_conf 0257888776722057668999815853898875300001346--331014689888899998640-----163246879 Q gi|254780663|r 78 HHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTS--PGDFIGKWMDIVRPIAQKIVA-----NNPTEKQTI 150 (207) Q Consensus 78 ~~~~~~sle~av~~l~v~~iiV~GHt~CGav~aa~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 150 (207) +.++++|||||+..|+|++|||||||+||||+++++....... ..+.+..|+..+++....... ..+.++.+. T Consensus 83 d~~~~asleyAv~~L~v~~IvV~GHs~CGav~a~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 162 (216) T 3eyx_A 83 DLTLKATLEFAIICLKVNKVIICGHTDCGGIKTCLTNQREALPKVNCSHLYKYLDDIDTMYHEESQNLIHLKTQREKSHY 162 (216) T ss_dssp CHHHHHHHHHHHHTTCCSEEEEEEESSCHHHHHHHTTCGGGTGGGTCHHHHHHTHHHHHHHHHTHHHHTTCCSHHHHHHH T ss_pred CCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 70089999999985498789992598750689887524305653343046889999999999988741124777999999 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEEEECCCCEEEEEECCCC Q ss_conf 99999999999973097889999779967999999889876999846888 Q gi|254780663|r 151 LEQLSIRNSLKNIRNFPFVNKLEKEHMLQIHGAWFDISSGKLWILDPTSN 200 (207) Q Consensus 151 l~~~nV~~~v~~L~~~p~i~~~v~~g~l~I~G~~yDi~tG~v~~l~~~~~ 200 (207) ++++||+.|+++|++||+|++++++|+|.|||||||++||+|++|+++++ T Consensus 163 l~~~NV~~qv~~L~~~p~I~~~v~~g~l~V~G~~YDi~tG~v~~l~~~~~ 212 (216) T 3eyx_A 163 LSHCNVKRQFNRIIENPTVQTAVQNGELQVYGLLYNVEDGLLQTVSTYTK 212 (216) T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHTTSCEEEEEEECTTTCCEEEEEEECS T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHCCCCEEEEEEEECCCCEEEEECCCCC T ss_conf 99999999999997198899999879918999999889857999778878 No 7 >3e3i_A Carbonic anhydrase 2, beta carbonic anhydrase; allosteric site mutant, lyase, META binding, zinc; 2.00A {Haemophilus influenzae} PDB: 3e3g_A 2a8d_A 2a8c_A 3e3f_A 3e31_A 3e2x_A 3e2a_A 3e28_A 3e2w_A 3e1w_A 3e1v_A 3e24_A Probab=100.00 E-value=0 Score=361.95 Aligned_cols=193 Identities=30% Similarity=0.505 Sum_probs=167.0 Q ss_pred CCHHHHHHHHHHHHHHHCC--CCHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCC Q ss_conf 9746999999999997068--79889998623899759999626789988885178866248886242234577777530 Q gi|254780663|r 1 MTSFPNTLLERHREFIQDQ--YDKKLFQELANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQH 78 (207) Q Consensus 1 M~~~~~~Ll~~N~~f~~~~--~~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fv~RnaGn~v~~~~~~~~~ 78 (207) |.. +++|++||++|+++. .+|++|++|++||+|+++||||||||++|+.+||++|||+||+||+||+|+|. + T Consensus 1 M~~-l~~Ll~gN~~f~~~~~~~~~~~f~~la~gQ~P~~~vi~C~DSRv~pe~if~~~~GdlFVvRNaGN~v~~~-----d 74 (229) T 3e3i_A 1 MDK-IKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLWIACSDSRVPAEKLTNLEPGELFVHRNVANQVIHT-----D 74 (229) T ss_dssp CHH-HHHHHHHHHHHHHHHHHC------------CCCEEEEEETTCCSCHHHHHTCCTTSEEEEEETTCCCCTT-----C T ss_pred CCH-HHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHCCCCCCCEEEEECCCCCCCCC-----C T ss_conf 946-9999999999997513318789998606899965999876889798895689995468885235558875-----4 Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH----HHHCCCHHHHHHHHHH Q ss_conf 257888776722057668999815853898875300001346331014689888899998----6401632468799999 Q gi|254780663|r 79 HATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQK----IVANNPTEKQTILEQL 154 (207) Q Consensus 79 ~~~~~sle~av~~l~v~~iiV~GHt~CGav~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~ 154 (207) .++++|||||+.+|||++|||||||+||||+++++.... +....|...+++.... .....+..+.+.+++. T Consensus 75 ~~~~asleyAv~~L~v~~IvV~GHt~CGav~aa~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (229) T 3e3i_A 75 FNCLSVVQYAVDVLKIEHIIICGHTNCGGIHAAMADKDL-----GLINNWLLHIRDIWFKHGHLLGKLSPEKRADMLTKI 149 (229) T ss_dssp HHHHHHHHHHHHTSCCCEEEEEEESSCHHHHHHHSCCCC-----STHHHHHHHHHHHHHHTHHHHHTBCGGGHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCCC-----CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH T ss_conf 036788888775058656999635787620222214445-----664046777799999876553015838899999999 Q ss_pred HHHHHHHHHHCCHHHHHHHHCC-CCEEEEEEEECCCCEEEEEECCCCEEEE Q ss_conf 9999999973097889999779-9679999998898769998468882583 Q gi|254780663|r 155 SIRNSLKNIRNFPFVNKLEKEH-MLQIHGAWFDISSGKLWILDPTSNEFTC 204 (207) Q Consensus 155 nV~~~v~~L~~~p~i~~~v~~g-~l~I~G~~yDi~tG~v~~l~~~~~~F~~ 204 (207) ||+.|+++|+++|+|++++..+ +|+|||||||++||+|..|+...+.||- T Consensus 150 NV~~qv~~L~~~p~i~~~~~~~~~l~I~G~~YDi~tG~v~~L~~~~~~~e~ 200 (229) T 3e3i_A 150 NVAEQVYNLGRTSIVKSAWERGQKLSLHGWVYDVNDGFLVDQGVMATSRET 200 (229) T ss_dssp HHHHHHHHHHTSHHHHHHHHTTCCCEEEEEEECTTTCCEEEEEEEESSHHH T ss_pred HHHHHHHHHHHCHHHHHHHHCCCCEEEEEEEEECCCCEEEECCCCCCCCCC T ss_conf 999999999709688999983994089999998898569975787786331 No 8 >1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Probab=100.00 E-value=0 Score=354.13 Aligned_cols=191 Identities=27% Similarity=0.463 Sum_probs=167.0 Q ss_pred HHHHHHHHHHHHHCCC--CHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHH Q ss_conf 9999999999970687--98899986238997599996267899888851788662488862422345777775302578 Q gi|254780663|r 5 PNTLLERHREFIQDQY--DKKLFQELANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHATS 82 (207) Q Consensus 5 ~~~Ll~~N~~f~~~~~--~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fv~RnaGn~v~~~~~~~~~~~~~ 82 (207) .++++.+|+.|+++.+ +|++|++|++||+|+++||||||||++|+.+||++|||+||+|||||+|++. +.+++ T Consensus 290 ~~~~~~~n~~~~~~~~~~~p~~f~~la~gQ~P~~lvi~CsDSRv~pe~ifg~~pGdlFVvRNaGN~V~~~-----d~~~l 364 (496) T 1ddz_A 290 ANRVFVNNENWRQKMLKQDPQFFSNLAHTQTPEILWIGCADSRVPANQIINLPAGEVFVHRNIANQCIHS-----DMSFL 364 (496) T ss_dssp SSHHHHHHHHHHHHHHHHCTTHHHHHTTCCCCSEEEEEETTCSSCHHHHTTCCTTSEEEEEETTCCCCTT-----CHHHH T ss_pred HHHHHHCCHHHHHHHHCCCHHHHHHHHCCCCCCEEEEEECCCCCCHHHHCCCCCCCEEEEEECCCCCCCC-----CCCHH T ss_conf 8999873566776553159899998408999967999754879898997199997679987258746876-----65213 Q ss_pred HHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHH Q ss_conf 887767220576689998158538988753000013463310146898888999986401-----632468799999999 Q gi|254780663|r 83 AAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVAN-----NPTEKQTILEQLSIR 157 (207) Q Consensus 83 ~sle~av~~l~v~~iiV~GHt~CGav~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~nV~ 157 (207) +|||||+.+|+|++|||||||+||||+++++.. ..+.+..|+..++++....... .+.+..+.++++||+ T Consensus 365 asleyAv~~L~v~~IvV~GHt~CGav~aa~~~~-----~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~l~e~NV~ 439 (496) T 1ddz_A 365 SVLQYAVQYLKVKRVVVCGHYACGGCAAALGDS-----RLGLIDNWLRHIRDVRRHNQAELSRITDPKDSLNRLIEINVL 439 (496) T ss_dssp HHHHHHHHTSCCSEEEEEEETTCHHHHHTTSCC-----CCTTHHHHTHHHHHHHHTTHHHHTTCCSHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCC-----CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH T ss_conf 458999986199779992799866877103145-----444078999999999998776432358979999999999999 Q ss_pred HHHHHHHCCHHHHHHHHCC-CCEEEEEEEECCCCEEEEEECCCCEEEEC Q ss_conf 9999973097889999779-96799999988987699984688825833 Q gi|254780663|r 158 NSLKNIRNFPFVNKLEKEH-MLQIHGAWFDISSGKLWILDPTSNEFTCD 205 (207) Q Consensus 158 ~~v~~L~~~p~i~~~v~~g-~l~I~G~~yDi~tG~v~~l~~~~~~F~~~ 205 (207) .|+++|+++|+|++++.+| +|.||||+||++||+|++++...+.++-. T Consensus 440 ~qv~~L~~~p~v~~~~~~g~~l~I~G~vydi~tG~v~~l~~~~~~~~~~ 488 (496) T 1ddz_A 440 EQMHNVCATSIVQDAWDAGQELEVQGVVYGVGDGKLRDMGVVAKANDDI 488 (496) T ss_dssp HHHHHHHHSHHHHHHHHTTCCCEEEEEEECTTTTCCEEEEEESCCCCCC T ss_pred HHHHHHHCCHHHHHHHHCCCCCEEEEEEEECCCEEEEEEECCCCCCCCH T ss_conf 9999997496777999769962899999988981799971888787688 No 9 >1ylk_A Hypothetical protein RV1284/MT1322; homodimer, alpha/beta-fold, structural proteomics in europe, spine, structural genomics; 2.00A {Mycobacterium tuberculosis H37RV} Probab=100.00 E-value=3.6e-44 Score=305.45 Aligned_cols=163 Identities=21% Similarity=0.341 Sum_probs=132.1 Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHH Q ss_conf 74699999999999706879889998623899759999626789988885178866248886242234577777530257 Q gi|254780663|r 2 TSFPNTLLERHREFIQDQYDKKLFQELANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHAT 81 (207) Q Consensus 2 ~~~~~~Ll~~N~~f~~~~~~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fv~RnaGn~v~~~~~~~~~~~~ 81 (207) .+++|+|+++|++|+++++. .++.+|+|+++||||||||++|+.+||++|||+|++||+||+|+ .++ T Consensus 10 ~t~~d~ll~~N~~~~~~~~~-----~l~~~q~p~~~vi~CsDSRv~pe~if~~~~Gd~fvvRnaGn~v~--------~~~ 76 (172) T 1ylk_A 10 GTVTDDYLANNVDYASGFKG-----PLPMPPSKHIAIVACMDARLDVYRMLGIKEGEAHVIRNAGCVVT--------DDV 76 (172) T ss_dssp CCHHHHHHHHHHHHHHTCCC-----CCCSSCTTCEEEEEECCTTCCHHHHHTCCTTSEEEEEETTSCCC--------HHH T ss_pred CCHHHHHHHHHHHHHHHCCC-----CCCCCCCCCEEEEEECCCCCCHHHHHCCCCCCEEEEEEECCCCC--------HHH T ss_conf 42899999999999964867-----78888898469999558897999983999975899985444699--------677 Q ss_pred HHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 88877672205766899981585389887530000134633101468988889999864016324687999999999999 Q gi|254780663|r 82 SAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPTEKQTILEQLSIRNSLK 161 (207) Q Consensus 82 ~~sle~av~~l~v~~iiV~GHt~CGav~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nV~~~v~ 161 (207) ++|||||+.+||+++|||||||+|||++++.+...... ... ...............++||++|++ T Consensus 77 ~~sleyav~~L~v~~IvVlGHt~CGav~aa~~~~~~~~-------------~~~--~~~~~~~~~~~~~d~~enV~~~V~ 141 (172) T 1ylk_A 77 IRSLAISQRLLGTREIILLHHTDCGMLTFTDDDFKRAI-------------QDE--TGIRPTWSPESYPDAVEDVRQSLR 141 (172) T ss_dssp HHHHHHHHHTTCCCEEEEEEESSCGGGSCCHHHHHHHH-------------HHH--HSCCCSSCCCCCSCHHHHHHHHHH T ss_pred HHHHHHHHEECCCCEEEEEEECCCCCCCCCHHHHHHHH-------------HHH--HCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 42144440123975899971058665103377776544-------------465--346841223332268999999999 Q ss_pred HHHCCHHHHHHHHCCCCEEEEEEEECCCCEEEEEEC Q ss_conf 973097889999779967999999889876999846 Q gi|254780663|r 162 NIRNFPFVNKLEKEHMLQIHGAWFDISSGKLWILDP 197 (207) Q Consensus 162 ~L~~~p~i~~~v~~g~l~I~G~~yDi~tG~v~~l~~ 197 (207) +|+++|+|++ ++.||||+||++||+|+.+.| T Consensus 142 ~L~~~p~i~~-----~l~I~G~vyDi~TG~v~~V~p 172 (172) T 1ylk_A 142 RIEVNPFVTK-----HTSLRGFVFDVATGKLNEVTP 172 (172) T ss_dssp HHHTCTTCCC-----CSEEEEEEECTTTCCEEEECC T ss_pred HHHHCCCCCC-----CCEEEEEEEECCCCEEEEECC T ss_conf 9983946367-----978999999899987988379 No 10 >1g5c_A Beta-carbonic anhydrase; zinc, hepes, lyase; HET: EPE; 2.10A {Methanothermobacterthermautotrophicus} SCOP: c.53.2.1 Probab=100.00 E-value=1.8e-43 Score=300.96 Aligned_cols=166 Identities=23% Similarity=0.364 Sum_probs=128.3 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEEECCCCCCCH--HHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHH Q ss_conf 699999999999706879889998623899759999626789988--885178866248886242234577777530257 Q gi|254780663|r 4 FPNTLLERHREFIQDQYDKKLFQELANQQKPKIMIISCCDSRVAP--ETIFNAKPGELFVVRNVANIVPPYEPDGQHHAT 81 (207) Q Consensus 4 ~~~~Ll~~N~~f~~~~~~~~~~~~l~~~q~P~~~vitC~DsRv~~--~~i~~~~~Gd~fv~RnaGn~v~~~~~~~~~~~~ 81 (207) ++++|+++|++|+... ....||+|+++||||||||++| |.+||++|||+||+||+||+|++ ++ T Consensus 2 ~l~~ll~~n~~~~~~~-------~~~~gq~P~~~vi~C~DsRv~p~~e~i~~~~~Gd~fv~RnaGn~v~~--------~~ 66 (170) T 1g5c_A 2 IIKDILRENQDFRFRD-------LSDLKHSPKLCIITCMDSRLIDLLERALGIGRGDAKVIKNAGNIVDD--------GV 66 (170) T ss_dssp CHHHHHHHHTTCCCCS-------GGGSSSSCCEEEEEECCGGGTTHHHHHHTCCTTSCEEEEETTCCCCH--------HH T ss_pred CHHHHHHHHHHHHHHH-------HCCCCCCCCEEEEEEECCCCCCHHHHHHCCCCCCEEEEECCCCCCCH--------HH T ss_conf 6799988635130223-------30259998579998647799821778848999737998504777887--------68 Q ss_pred HHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 88877672205766899981585389887530000134633101468988889999864016324687999999999999 Q gi|254780663|r 82 SAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPTEKQTILEQLSIRNSLK 161 (207) Q Consensus 82 ~~sle~av~~l~v~~iiV~GHt~CGav~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nV~~~v~ 161 (207) ++||+||+.+||+++|+|||||+|||++++.+.........+..... +++...... .+. ..+++||++|++ T Consensus 67 ~~sl~~av~~l~v~~IvV~GHt~CG~v~a~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~----~~~e~nV~~qv~ 137 (170) T 1g5c_A 67 IRSAAVAIYALGDNEIIIVGHTDCGMARLDEDLIVSRMRELGVEEEV---IENFSIDVL--NPV----GDEEENVIEGVK 137 (170) T ss_dssp HHHHHHHHHHHCCCEEEEEEESSCCTTSCCHHHHHHHHHHTTCCHHH---HHHHHHHHT--SSC----CCHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCHHH---HHHCCCCCC--CCC----CCHHHHHHHHHH T ss_conf 88999999834987799984557674325878887565441525888---864470303--541----379999999999 Q ss_pred HHHCCHHHHHHHHCCCCEEEEEEEECCCCEEEEEECC Q ss_conf 9730978899997799679999998898769998468 Q gi|254780663|r 162 NIRNFPFVNKLEKEHMLQIHGAWFDISSGKLWILDPT 198 (207) Q Consensus 162 ~L~~~p~i~~~v~~g~l~I~G~~yDi~tG~v~~l~~~ 198 (207) +|++||+|++ ++.|||||||++||+|+.|+.+ T Consensus 138 ~L~~~P~i~~-----~l~V~G~vydi~TG~v~~l~~d 169 (170) T 1g5c_A 138 RLKSSPLIPE-----SIGVHGLIIDINTGRLKPLYLD 169 (170) T ss_dssp HHHHCTTSCT-----TSEEEEEEECTTTCCEEEEECC T ss_pred HHHHCCCCCC-----CCEEEEEEEECCCCEEEEECCC T ss_conf 9982905134-----8789999998899769871799 No 11 >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} Probab=77.15 E-value=1.5 Score=22.22 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=19.5 Q ss_pred HCCHHHHHHHHCCCCEEEEEEEECCCCEEEEEECCCC Q ss_conf 3097889999779967999999889876999846888 Q gi|254780663|r 164 RNFPFVNKLEKEHMLQIHGAWFDISSGKLWILDPTSN 200 (207) Q Consensus 164 ~~~p~i~~~v~~g~l~I~G~~yDi~tG~v~~l~~~~~ 200 (207) +.||.++.+++.|+ .+|+.||++..+++..+ T Consensus 101 rryP~~~~a~~~g~------~~di~t~~~~~~~p~~N 131 (320) T 2hwk_A 101 RRYPQLPRAVATGR------VYDMNTGTLRNYDPRIN 131 (320) T ss_dssp TTCTTHHHHHHHTC------EECTTTSSEECCCTTSC T ss_pred HHCCHHHHHHCCCE------EEEECCCCCCCCCCCCC T ss_conf 86854344423772------89843784325886543 No 12 >1vkh_A Putative serine hydrolase; YDR428C, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 Probab=58.62 E-value=8.6 Score=17.35 Aligned_cols=37 Identities=14% Similarity=0.072 Sum_probs=29.6 Q ss_pred CCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH Q ss_conf 3025788877672205766899981585389887530 Q gi|254780663|r 77 QHHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLD 113 (207) Q Consensus 77 ~~~~~~~sle~av~~l~v~~iiV~GHt~CGav~aa~~ 113 (207) .-.++.+++.+.....+.+.|+++|||--|.+...+. T Consensus 96 ~~~D~~~a~~~l~~~~~~~~i~l~G~SaGg~lal~~~ 132 (273) T 1vkh_A 96 NLYDAVSNITRLVKEKGLTNINMVGHSVGATFIWQIL 132 (273) T ss_dssp HHHHHHHHHHHHHHHHTCCCEEEEEETHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHH T ss_conf 9999999999875316987538999640899999998 No 13 >2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A Probab=48.57 E-value=11 Score=16.72 Aligned_cols=19 Identities=16% Similarity=0.034 Sum_probs=14.5 Q ss_pred CCEEEEEEEECCCCEEEEE Q ss_conf 9679999998898769998 Q gi|254780663|r 177 MLQIHGAWFDISSGKLWIL 195 (207) Q Consensus 177 ~l~I~G~~yDi~tG~v~~l 195 (207) ++.|.||+.+..+|.|+.+ T Consensus 33 ~~~l~G~V~N~~dG~Vei~ 51 (99) T 2vh7_A 33 KLGLVGWVQNTDRGTVQGQ 51 (99) T ss_dssp HTTCEEEEEECTTSCEEEE T ss_pred HCCCEEEEEECCCCCEEEE T ss_conf 8198899999999919999 No 14 >3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein structure initiative, PSI; 2.07A {Mus musculus} Probab=45.45 E-value=7.3 Score=17.81 Aligned_cols=17 Identities=12% Similarity=0.081 Sum_probs=12.5 Q ss_pred EEEEEEEECCCCEEEEE Q ss_conf 79999998898769998 Q gi|254780663|r 179 QIHGAWFDISSGKLWIL 195 (207) Q Consensus 179 ~I~G~~yDi~tG~v~~l 195 (207) +.|||.||++||++... T Consensus 81 PyHgw~fdl~tG~~~~~ 97 (157) T 3d89_A 81 PWHKYKITLATGEGLYQ 97 (157) T ss_dssp TTTCCEEETTTCEEEEE T ss_pred CCCCCEEECCCCCEEEC T ss_conf 88898998999888671 No 15 >1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1 Probab=44.85 E-value=13 Score=16.12 Aligned_cols=19 Identities=16% Similarity=0.319 Sum_probs=15.5 Q ss_pred CCEEEEEEEECCCCEEEEE Q ss_conf 9679999998898769998 Q gi|254780663|r 177 MLQIHGAWFDISSGKLWIL 195 (207) Q Consensus 177 ~l~I~G~~yDi~tG~v~~l 195 (207) ++.|.||+-++.+|.|+.+ T Consensus 27 ~l~l~G~V~N~~dG~Vei~ 45 (88) T 1ulr_A 27 ELGLSGYAENLPDGRVEVV 45 (88) T ss_dssp HTTCEEEEEECTTSCEEEE T ss_pred HCCCEEEEEECCCCCEEEE T ss_conf 8099899999999989999 No 16 >2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A Probab=43.91 E-value=14 Score=15.97 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=14.2 Q ss_pred CCEEEEEEEECCCCEEEEE Q ss_conf 9679999998898769998 Q gi|254780663|r 177 MLQIHGAWFDISSGKLWIL 195 (207) Q Consensus 177 ~l~I~G~~yDi~tG~v~~l 195 (207) ++.|.||+.+..+|.|+.+ T Consensus 27 ~lgl~G~V~N~~dG~Vei~ 45 (91) T 2fhm_A 27 KRKLAGWVKNRDDGRVEIL 45 (91) T ss_dssp HTTCEEEEEECTTSCEEEE T ss_pred HCCCEEEEEECCCCCEEEE T ss_conf 8398899999999989999 No 17 >1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A Probab=42.82 E-value=13 Score=16.26 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=13.7 Q ss_pred CCEEEEEEEECCCCEEEEE Q ss_conf 9679999998898769998 Q gi|254780663|r 177 MLQIHGAWFDISSGKLWIL 195 (207) Q Consensus 177 ~l~I~G~~yDi~tG~v~~l 195 (207) ++.|.||+.+..+|.|+.+ T Consensus 29 ~l~l~G~V~N~~dG~Vei~ 47 (91) T 1w2i_A 29 KLGVNGWVRNLPDGSVEAV 47 (91) T ss_dssp HHTCEEEEEECTTSCEEEE T ss_pred HCCCEEEEEECCCCEEEEE T ss_conf 8499899999969979999 No 18 >1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1 Probab=41.44 E-value=5.8 Score=18.47 Aligned_cols=75 Identities=15% Similarity=0.171 Sum_probs=38.8 Q ss_pred CCCCEEEEEECCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCC-CHHHHHHHHHHHHCCCCCEEEEEECCCHHH Q ss_conf 89975999962678998888517886624888624223457777753-025788877672205766899981585389 Q gi|254780663|r 31 QQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQ-HHATSAAIEFAVQGLNVEHIVVMGHGRCGG 107 (207) Q Consensus 31 ~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fv~RnaGn~v~~~~~~~~-~~~~~~sle~av~~l~v~~iiV~GHt~CGa 107 (207) .+..+++|||+||+|-.-+-..+-..-++ ++..|.-|........ ......++.-+...-+...|+..|=|++|. T Consensus 11 p~~~~~avitvsD~~~~~~D~nGp~L~~~--l~~~G~~v~~~~iv~Dd~~~i~~~~~~~~~~~~~dvIiT~GGtg~g~ 86 (169) T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHEL--LKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGITK 86 (169) T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHH--HHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCSSST T ss_pred CCCCEEEEEEECCCCCCCCCCHHHHHHHH--HHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC T ss_conf 87878999998188887768509999999--99779977898745897999999999998656983899734414775 No 19 >2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase; 1.90A {Streptococcus pyogenes} PDB: 2wyi_A* Probab=40.04 E-value=6.8 Score=18.01 Aligned_cols=13 Identities=15% Similarity=0.107 Sum_probs=7.6 Q ss_pred HHHHHHHHHHHHH Q ss_conf 4699999999999 Q gi|254780663|r 3 SFPNTLLERHREF 15 (207) Q Consensus 3 ~~~~~Ll~~N~~f 15 (207) ++.+.|+.|.+-+ T Consensus 121 slirql~~G~~~~ 133 (923) T 2wyh_A 121 SNVRNMLIGKEDC 133 (923) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999999 No 20 >2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A Probab=39.92 E-value=17 Score=15.46 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=12.7 Q ss_pred CCEEEEEEEECCCCEEEEE Q ss_conf 9679999998898769998 Q gi|254780663|r 177 MLQIHGAWFDISSGKLWIL 195 (207) Q Consensus 177 ~l~I~G~~yDi~tG~v~~l 195 (207) ++.|.||+-+..+|.|+.+ T Consensus 39 ~l~l~G~V~N~~dG~Vei~ 57 (101) T 2bjd_A 39 RLGIKGYAKNLPDGSVEVV 57 (101) T ss_dssp HTTCEEEEEECTTSCEEEE T ss_pred HCCCEEEEEECCCCCEEEE T ss_conf 8599799999999989999 No 21 >1aps_A Acylphosphatase; hydrolase(acting on acid anhydrides); NMR {Equus caballus} SCOP: d.58.10.1 Probab=39.60 E-value=13 Score=16.23 Aligned_cols=19 Identities=16% Similarity=0.027 Sum_probs=15.5 Q ss_pred CCEEEEEEEECCCCEEEEE Q ss_conf 9679999998898769998 Q gi|254780663|r 177 MLQIHGAWFDISSGKLWIL 195 (207) Q Consensus 177 ~l~I~G~~yDi~tG~v~~l 195 (207) ++.|.||+.+..+|.|+.+ T Consensus 32 ~~~l~G~V~N~~dG~Vei~ 50 (98) T 1aps_A 32 KIGVVGWVKNTSKGTVTGQ 50 (98) T ss_dssp HHTCEEEEECCTTCEEEEE T ss_pred HCCCEEEEEECCCCEEEEE T ss_conf 7799899999999949999 No 22 >1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1 Probab=37.72 E-value=17 Score=15.44 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=12.8 Q ss_pred CCEEEEEEEECCCCEEEEE Q ss_conf 9679999998898769998 Q gi|254780663|r 177 MLQIHGAWFDISSGKLWIL 195 (207) Q Consensus 177 ~l~I~G~~yDi~tG~v~~l 195 (207) ++.|.||+-+..+|.|+.+ T Consensus 36 ~l~l~G~V~N~~dG~Vei~ 54 (102) T 1urr_A 36 RLGVRGWCMNTRDGTVKGQ 54 (102) T ss_dssp HHTCEEEEEECTTSCEEEE T ss_pred HCCCEEEEEECCCCCEEEE T ss_conf 8699899999999989999 No 23 >2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3 Probab=35.40 E-value=7.7 Score=17.67 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=9.4 Q ss_pred EEEEEEEECCCCEE Q ss_conf 79999998898769 Q gi|254780663|r 179 QIHGAWFDISSGKL 192 (207) Q Consensus 179 ~I~G~~yDi~tG~v 192 (207) +.|||.||++||+. T Consensus 74 p~Hg~~F~l~tG~~ 87 (113) T 2jo6_A 74 PLKKQRFRLSDGLC 87 (113) T ss_dssp TTTTEEEETTTTEE T ss_pred CCCCCEEECCCCCC T ss_conf 98987897898248 No 24 >1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta hydrolase fold, mutant M99T; 1.50A {Streptomyces aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A Probab=35.01 E-value=20 Score=14.97 Aligned_cols=30 Identities=17% Similarity=0.399 Sum_probs=20.8 Q ss_pred HHHHHHHHHHHCCCCCEEEEEECC-CHHHHH Q ss_conf 578887767220576689998158-538988 Q gi|254780663|r 80 ATSAAIEFAVQGLNVEHIVVMGHG-RCGGIQ 109 (207) Q Consensus 80 ~~~~sle~av~~l~v~~iiV~GHt-~CGav~ 109 (207) .....+.-.+..++.+.++++||| ++|.+. T Consensus 75 ~~~~di~~~~~~l~~~~~~lvGhS~Gg~~~~ 105 (277) T 1brt_A 75 TFAADLNTVLETLDLQDAVLVGFSTGTGEVA 105 (277) T ss_dssp HHHHHHHHHHHHHTCCSEEEEEEGGGHHHHH T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCHH T ss_conf 9999999999981999706999723312123 No 25 >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A Probab=32.93 E-value=12 Score=16.36 Aligned_cols=20 Identities=10% Similarity=0.190 Sum_probs=10.5 Q ss_pred HHHHHCCCCCEEEEEECCCC Q ss_conf 99862389975999962678 Q gi|254780663|r 25 FQELANQQKPKIMIISCCDS 44 (207) Q Consensus 25 ~~~l~~~q~P~~~vitC~Ds 44 (207) ++.+.+..-|.+++|..+|- T Consensus 127 ~~~~~~~~lp~i~~INK~Dr 146 (529) T 2h5e_A 127 MEVTRLRDTPILTFMNKLDR 146 (529) T ss_dssp HHHHTTTTCCEEEEEECTTS T ss_pred HHHHHHCCCCEEEEEEEECC T ss_conf 87777517870754443146 No 26 >1gxu_A Hydrogenase maturation protein HYPF; phosphatase, acylphosphatases, hydrogenase maturations, fibril formation, zinc-finger, complete proteome; 1.27A {Escherichia coli} SCOP: d.58.10.1 PDB: 1gxt_A Probab=32.70 E-value=14 Score=16.04 Aligned_cols=23 Identities=22% Similarity=0.253 Sum_probs=11.6 Q ss_pred CEEEEEEEECCCCEEEEEECCCC Q ss_conf 67999999889876999846888 Q gi|254780663|r 178 LQIHGAWFDISSGKLWILDPTSN 200 (207) Q Consensus 178 l~I~G~~yDi~tG~v~~l~~~~~ 200 (207) +.|.||+-+..+|.+..+..+.+ T Consensus 33 l~l~G~V~N~~dGv~~~~~~~~e 55 (91) T 1gxu_A 33 LNLHGDVCNDGDGVEVRLREDPE 55 (91) T ss_dssp HTCCEEEEECSSSEEEEESSCCH T ss_pred CCCEEEEEECCCCEEEEEEECHH T ss_conf 19889999999945999991999 No 27 >3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} Probab=31.83 E-value=7.8 Score=17.65 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=12.7 Q ss_pred CEEEEEEEECCCCEEEE Q ss_conf 67999999889876999 Q gi|254780663|r 178 LQIHGAWFDISSGKLWI 194 (207) Q Consensus 178 l~I~G~~yDi~tG~v~~ 194 (207) -+.|||.||+.||++.. T Consensus 61 CP~Hg~~F~l~tG~~~~ 77 (106) T 3dqy_A 61 CTLHFGKFCVRTGKVKA 77 (106) T ss_dssp CTTTCCEEETTTCCEEE T ss_pred ECCCCCEEECCCCCCCC T ss_conf 88889899999823966 No 28 >1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxidoreductase; 1.60A {Burkholderia xenovorans LB400} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B* Probab=31.40 E-value=8.9 Score=17.27 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=13.7 Q ss_pred CEEEEEEEECCCCEEEEE Q ss_conf 679999998898769998 Q gi|254780663|r 178 LQIHGAWFDISSGKLWIL 195 (207) Q Consensus 178 l~I~G~~yDi~tG~v~~l 195 (207) -+.|||.||++||++..- T Consensus 66 Cp~H~~~f~l~tG~~~~~ 83 (112) T 1fqt_A 66 CSLHMGKFCVRTGKVKSP 83 (112) T ss_dssp CTTTCCEEETTTCCEEES T ss_pred ECCCCCEEECCCEEECCC T ss_conf 088699998997008578 No 29 >2gv1_A Probable acylphosphatase; globular alpha-helix/beta-sheet protein, hydrolase; NMR {Escherichia coli} Probab=31.32 E-value=12 Score=16.31 Aligned_cols=18 Identities=17% Similarity=0.337 Sum_probs=11.1 Q ss_pred CEEEEEEEECCCCEEEEE Q ss_conf 679999998898769998 Q gi|254780663|r 178 LQIHGAWFDISSGKLWIL 195 (207) Q Consensus 178 l~I~G~~yDi~tG~v~~l 195 (207) +.|.||+.+..+|.|+.+ T Consensus 30 l~l~G~V~N~~dG~Vei~ 47 (92) T 2gv1_A 30 LGLTGYAKNLDDGSVEVV 47 (92) T ss_dssp HTCCCEEEECSSSCEEEE T ss_pred CCCEEEEEECCCCCEEEE T ss_conf 198899999999979999 No 30 >3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.55A {Enterococcus faecalis} Probab=30.08 E-value=11 Score=16.61 Aligned_cols=14 Identities=21% Similarity=-0.092 Sum_probs=7.4 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 469999999999970 Q gi|254780663|r 3 SFPNTLLERHREFIQ 17 (207) Q Consensus 3 ~~~~~Ll~~N~~f~~ 17 (207) ++.+.|+.| +.|.+ T Consensus 102 slirql~~G-~~~~~ 115 (899) T 3lvt_A 102 SNVRNMLIG-HLESQ 115 (899) T ss_dssp HHHHHHHHH-HHHHH T ss_pred HHHHHHHHH-HHHHH T ss_conf 999999999-99999 No 31 >3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3 Probab=30.03 E-value=7.3 Score=17.84 Aligned_cols=12 Identities=25% Similarity=0.415 Sum_probs=5.4 Q ss_pred EEEEEECCCCEE Q ss_conf 999998898769 Q gi|254780663|r 181 HGAWFDISSGKL 192 (207) Q Consensus 181 ~G~~yDi~tG~v 192 (207) |||.||++||+. T Consensus 74 Hg~~Fdl~tG~~ 85 (119) T 3c0d_A 74 YKQHFSLKSGQC 85 (119) T ss_dssp TCCEEETTTCBB T ss_pred CCCEEECCCCCC T ss_conf 898999998479 No 32 >1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A {Streptomyces lividans} SCOP: c.69.1.12 Probab=28.82 E-value=25 Score=14.31 Aligned_cols=79 Identities=14% Similarity=0.125 Sum_probs=39.4 Q ss_pred CCCEEEEE--ECCCCCCCHHHHHCC-CCC-CEEEE--ECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCH Q ss_conf 99759999--626789988885178-866-24888--6242234577777530257888776722057668999815853 Q gi|254780663|r 32 QKPKIMII--SCCDSRVAPETIFNA-KPG-ELFVV--RNVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRC 105 (207) Q Consensus 32 q~P~~~vi--tC~DsRv~~~~i~~~-~~G-d~fv~--RnaGn~v~~~~~~~~~~~~~~sle~av~~l~v~~iiV~GHt~C 105 (207) ..|.++++ .+.+++.-...+-.. ..| .++.. |.-|.--.+... .........+.-.+..++.+.++++||+.- T Consensus 20 ~~~~vvllHG~~~~~~~~~~~~~~l~~~g~~vi~~D~~G~G~s~~~~~~-~~~~~~~~d~~~~l~~l~~~~~~lvg~s~g 98 (275) T 1a88_A 20 DGLPVVFHHGWPLSADDWDNQMLFFLSHGYRVIAHDRRGHGRSDQPSTG-HDMDTYAADVAALTEALDLRGAVHIGHSTG 98 (275) T ss_dssp TSCEEEEECCTTCCGGGGHHHHHHHHHTTCEEEEECCTTSTTSCCCSSC-CSHHHHHHHHHHHHHHHTCCSEEEEEETHH T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 9984999899988878999999999968998999827998667888888-899999999999987527876424553357 Q ss_pred HHHHHH Q ss_conf 898875 Q gi|254780663|r 106 GGIQAV 111 (207) Q Consensus 106 Gav~aa 111 (207) |++.+. T Consensus 99 G~~~a~ 104 (275) T 1a88_A 99 GGEVAR 104 (275) T ss_dssp HHHHHH T ss_pred CCCHHH T ss_conf 752305 No 33 >1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B Probab=28.38 E-value=15 Score=15.71 Aligned_cols=67 Identities=18% Similarity=0.238 Sum_probs=39.5 Q ss_pred CCCEEEEEECCCCCCCHHH-----H---HCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC Q ss_conf 9975999962678998888-----5---1788662488862422345777775302578887767220576689998158 Q gi|254780663|r 32 QKPKIMIISCCDSRVAPET-----I---FNAKPGELFVVRNVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHG 103 (207) Q Consensus 32 q~P~~~vitC~DsRv~~~~-----i---~~~~~Gd~fv~RnaGn~v~~~~~~~~~~~~~~sle~av~~l~v~~iiV~GHt 103 (207) +..+++|||.+|+|-..+- + +.. .| ..++. ..+++ .........+.-++..-++..|+-.|=+ T Consensus 9 ~p~rvavitvsD~rg~~~D~nGp~L~~~l~~-~G-~~v~~--~~iv~-----Dd~~~~~~~l~~~~~~~~~dlIiTtGGt 79 (172) T 1mkz_A 9 IPTRIAILTVSNRRGEEDDTSGHYLRDSAQE-AG-HHVVD--KAIVK-----ENRYAIRAQVSAWIASDDVQVVLITGGT 79 (172) T ss_dssp CCCEEEEEEECSSCCGGGCHHHHHHHHHHHH-TT-CEEEE--EEEEC-----SCHHHHHHHHHHHHHSSSCCEEEEESCC T ss_pred CCCEEEEEEEECCCCCCCCCHHHHHHHHHHH-CC-CEEEE--EEECC-----CCHHHHHHHHHHHHHCCCCCEEEECCCE T ss_conf 6868999998489886766739999999998-59-95776--31058-----8579999999998762567615852531 Q ss_pred CHHH Q ss_conf 5389 Q gi|254780663|r 104 RCGG 107 (207) Q Consensus 104 ~CGa 107 (207) ++|. T Consensus 80 g~g~ 83 (172) T 1mkz_A 80 GLTE 83 (172) T ss_dssp SSST T ss_pred ECCC T ss_conf 3477 No 34 >1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A Probab=28.29 E-value=8.1 Score=17.52 Aligned_cols=15 Identities=20% Similarity=0.087 Sum_probs=10.7 Q ss_pred CEEEEEEEECCCCEE Q ss_conf 679999998898769 Q gi|254780663|r 178 LQIHGAWFDISSGKL 192 (207) Q Consensus 178 l~I~G~~yDi~tG~v 192 (207) -+.|||.||++||.+ T Consensus 63 Cp~H~~~f~l~tG~~ 77 (111) T 1vm9_A 63 CRAHLWTFNDGTGHG 77 (111) T ss_dssp CTTTCCEEETTTCBB T ss_pred ECCCCCEEECCCCCC T ss_conf 489998999999459 No 35 >2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida} Probab=27.84 E-value=9.1 Score=17.19 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=14.4 Q ss_pred CEEEEEEEECCCCEEEEE Q ss_conf 679999998898769998 Q gi|254780663|r 178 LQIHGAWFDISSGKLWIL 195 (207) Q Consensus 178 l~I~G~~yDi~tG~v~~l 195 (207) -+.|||.||++||++..- T Consensus 63 Cp~Hg~~F~~~~G~~~~~ 80 (103) T 2qpz_A 63 CPLHQGRFDVCTGKALCA 80 (103) T ss_dssp CTTTTCEEETTTCCEEET T ss_pred ECCCCCEEECCCCCCCCC T ss_conf 189898998998338358 No 36 >2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae} Probab=27.40 E-value=6.9 Score=17.97 Aligned_cols=15 Identities=40% Similarity=0.676 Sum_probs=8.8 Q ss_pred EEEEEEEECCCCEEE Q ss_conf 799999988987699 Q gi|254780663|r 179 QIHGAWFDISSGKLW 193 (207) Q Consensus 179 ~I~G~~yDi~tG~v~ 193 (207) +.|||.||++||++. T Consensus 65 p~Hg~~F~~~tG~~~ 79 (108) T 2i7f_A 65 PFHGGSFDIATGAAK 79 (108) T ss_dssp SSTTCEEETTTCCBC T ss_pred CCCCCEEECCCCCCC T ss_conf 698839999997796 No 37 >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A Probab=27.19 E-value=18 Score=15.23 Aligned_cols=58 Identities=9% Similarity=0.040 Sum_probs=31.4 Q ss_pred CCCCCCCHHHHHCCCCCCEEEEECCCCCCC-CCCCCCCCHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 267899888851788662488862422345-777775302578887767220576689998 Q gi|254780663|r 41 CCDSRVAPETIFNAKPGELFVVRNVANIVP-PYEPDGQHHATSAAIEFAVQGLNVEHIVVM 100 (207) Q Consensus 41 C~DsRv~~~~i~~~~~Gd~fv~RnaGn~v~-~~~~~~~~~~~~~sle~av~~l~v~~iiV~ 100 (207) |-......+++.|+..-|.-++=..++.=. +.... ....+-..+ +.+..||++.+||+ T Consensus 93 pGH~~f~~~~i~g~~~~d~ailvV~A~~G~~~~g~~-~~~qTkEHl-~l~~~Lgi~~iiV~ 151 (458) T 1f60_A 93 PGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGIS-KDGQTREHA-LLAFTLGVRQLIVA 151 (458) T ss_dssp CCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTC-TTSHHHHHH-HHHHHTTCCEEEEE T ss_pred CCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHH-HHHHHHHHH-HHHHHCCCCEEEEE T ss_conf 974878999987863146258998637672323100-557599999-99998599979999 No 38 >2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3 Probab=26.33 E-value=9.5 Score=17.07 Aligned_cols=11 Identities=18% Similarity=0.302 Sum_probs=4.5 Q ss_pred EEEEEECCCCE Q ss_conf 99999889876 Q gi|254780663|r 181 HGAWFDISSGK 191 (207) Q Consensus 181 ~G~~yDi~tG~ 191 (207) |||.||++||+ T Consensus 73 Hg~~F~l~tG~ 83 (130) T 2jza_A 73 KKQHFRLYDGF 83 (130) T ss_dssp SCCEEETTTCC T ss_pred CCCEEECCCCC T ss_conf 99788689977 No 39 >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* Probab=26.30 E-value=23 Score=14.57 Aligned_cols=16 Identities=13% Similarity=0.144 Sum_probs=9.0 Q ss_pred CCCCEEEEEECCCCCC Q ss_conf 8997599996267899 Q gi|254780663|r 31 QQKPKIMIISCCDSRV 46 (207) Q Consensus 31 ~q~P~~~vitC~DsRv 46 (207) +.-|.++++|=.++.= T Consensus 21 ~~~p~I~ivG~~nvGK 36 (195) T 1svi_A 21 GGLPEIALAGRSNVGK 36 (195) T ss_dssp SCCCEEEEEEBTTSSH T ss_pred CCCCEEEEECCCCCCH T ss_conf 8998999999999849 No 40 >3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans} Probab=26.20 E-value=11 Score=16.63 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=12.1 Q ss_pred CEEEEEEEECCCCEEEE Q ss_conf 67999999889876999 Q gi|254780663|r 178 LQIHGAWFDISSGKLWI 194 (207) Q Consensus 178 l~I~G~~yDi~tG~v~~ 194 (207) -+.|||.||++||++.. T Consensus 72 CP~H~~~Fdl~tG~~~~ 88 (121) T 3gce_A 72 CPLHVGRFDVRTGAPTA 88 (121) T ss_dssp CTTTCCEEETTTCCEEE T ss_pred ECCCCCEEECCCCCCCC T ss_conf 68999899999967966 No 41 >2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D* Probab=25.12 E-value=12 Score=16.42 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=9.4 Q ss_pred EEEEEEEECCCCEEE Q ss_conf 799999988987699 Q gi|254780663|r 179 QIHGAWFDISSGKLW 193 (207) Q Consensus 179 ~I~G~~yDi~tG~v~ 193 (207) +.|||.||++||++. T Consensus 66 p~H~~~f~l~tG~~~ 80 (115) T 2de6_D 66 PFHGGAFNVCTGMPA 80 (115) T ss_dssp TTTCCEEETTTCCEE T ss_pred CCCCCEEECCCCCCC T ss_conf 798999999996697 No 42 >3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus subsp} Probab=24.09 E-value=31 Score=13.76 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=26.5 Q ss_pred CHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHH Q ss_conf 02578887767220576689998158538988753 Q gi|254780663|r 78 HHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVL 112 (207) Q Consensus 78 ~~~~~~sle~av~~l~v~~iiV~GHt~CGav~aa~ 112 (207) -.++..++.+.....+.+.|+|+|||-=|.+.+++ T Consensus 147 l~d~~~a~~~l~~~~~~~~I~v~GdSAGG~Lal~l 181 (326) T 3d7r_A 147 FQAIQRVYDQLVSEVGHQNVVVMGDGSGGALALSF 181 (326) T ss_dssp HHHHHHHHHHHHHHHCGGGEEEEEETHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHH T ss_conf 99999999999834996344999718983477899 No 43 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 Probab=24.02 E-value=31 Score=13.75 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=20.9 Q ss_pred EEEEEECCCCEEEEEECCCCEEEECCC Q ss_conf 999998898769998468882583359 Q gi|254780663|r 181 HGAWFDISSGKLWILDPTSNEFTCDTR 207 (207) Q Consensus 181 ~G~~yDi~tG~v~~l~~~~~~F~~~~~ 207 (207) |..-.-++.|.+.+|||..+.|+.++. T Consensus 132 HaIa~~~~~~kvtfFDPN~GEF~~~s~ 158 (188) T 1ukf_A 132 HAIACSCEGSQFKLFDPNLGEFQSSRS 158 (188) T ss_dssp EEEEEEEETTEEEEEETTTEEEEEETT T ss_pred EEEEEEECCCCEEEECCCCCCEECCHH T ss_conf 289998569937997899877435617 No 44 >3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus mutans} Probab=23.95 E-value=31 Score=13.74 Aligned_cols=67 Identities=22% Similarity=0.095 Sum_probs=39.2 Q ss_pred CCCCCEEEEEECCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHH Q ss_conf 38997599996267899888851788662488862422345777775302578887767220576689998158538 Q gi|254780663|r 30 NQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCG 106 (207) Q Consensus 30 ~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fv~RnaGn~v~~~~~~~~~~~~~~sle~av~~l~v~~iiV~GHt~CG 106 (207) .|=.|. +++|-+||=-++..-+-...| .-++|-.. +.+ ..+.--+|+|++...+.+.|+|+|=++=. T Consensus 35 ~gi~Pd-~iiGDfDSi~~~~~~~~~~~~-~~i~~~p~------dkD--~TD~ekAl~~~~~~~~~~~I~i~Ga~GgR 101 (218) T 3ihk_A 35 NQLPLD-LAIGDFDSVSAEEFKQIKAKA-KKLVMAPA------EKN--DTDTELALKTIFDCFGRVEIIVFGAFGGR 101 (218) T ss_dssp TTCCCS-EEEECCTTSCHHHHHHHHTTC-SSEEECCS------SCS--SCHHHHHHHHHHHHTSSCEEEEESCSSSC T ss_pred CCCCCC-EEECCCCCCCHHHHHHHHHCC-CEEEECCC------CCC--CCHHHHHHHHHHHHCCCCEEEEEECCCCC T ss_conf 699869-898868899857888886369-78999870------146--20589999999875699879999337897 No 45 >3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase, golgi apparatus, membrane, signal-anchor, transmembrane; HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1 b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A* 3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A* 1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A* 2alw_A* 2f18_A* ... Probab=23.89 E-value=13 Score=16.09 Aligned_cols=15 Identities=20% Similarity=0.009 Sum_probs=9.4 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 469999999999970 Q gi|254780663|r 3 SFPNTLLERHREFIQ 17 (207) Q Consensus 3 ~~~~~Ll~~N~~f~~ 17 (207) ++.+.|+.|.+-+.+ T Consensus 177 slIrQl~~G~~~l~~ 191 (1045) T 3bvx_A 177 NVLLQLTEGQTWLKQ 191 (1045) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999999999998 No 46 >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* Probab=22.75 E-value=19 Score=15.13 Aligned_cols=65 Identities=12% Similarity=0.083 Sum_probs=31.6 Q ss_pred CCCEEEEEECC-CCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC Q ss_conf 99759999626-78998888517886624888624223457777753025788877672205766899981585 Q gi|254780663|r 32 QKPKIMIISCC-DSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGR 104 (207) Q Consensus 32 q~P~~~vitC~-DsRv~~~~i~~~~~Gd~fv~RnaGn~v~~~~~~~~~~~~~~sle~av~~l~v~~iiV~GHt~ 104 (207) ..+.+.+|-|. ..--..+...++..-|+-++=..++- +....+..++.+| ..++++.|+++---| T Consensus 68 ~~~~i~~iDTPGH~~F~~~~~rg~~~~D~ailVV~A~~-------Gv~~QT~e~i~~a-~~~~vp~Iv~INKiD 133 (594) T 1g7s_A 68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINE-------GFKPQTQEALNIL-RMYRTPFVVAANKID 133 (594) T ss_dssp TCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTT-------CCCHHHHHHHHHH-HHTTCCEEEEEECGG T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCC-------CCCHHHHHHHHHH-HHCCCCEEEEEECCC T ss_conf 88439999898769999999999976889999998888-------9638999999999-984998799998965 No 47 >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Probab=22.23 E-value=33 Score=13.53 Aligned_cols=34 Identities=21% Similarity=0.187 Sum_probs=27.6 Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHH Q ss_conf 2578887767220576689998158538988753 Q gi|254780663|r 79 HATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVL 112 (207) Q Consensus 79 ~~~~~sle~av~~l~v~~iiV~GHt~CGav~aa~ 112 (207) .++.++++|......+..|.|+|||--|.+.... T Consensus 421 ~D~~~a~~~l~~~~~~~ri~i~G~S~GG~~a~~~ 454 (582) T 3o4h_A 421 EDVSAAARWARESGLASELYIMGYSYGGYMTLCA 454 (582) T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEETHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC T ss_conf 6699999998862875267446655664343441 No 48 >1zo0_A ODC-AZ, ornithine decarboxylase antizyme; ornithine decarboxylase inhibitor, lyase inhibitor; NMR {Rattus norvegicus} SCOP: d.108.1.7 Probab=21.34 E-value=35 Score=13.41 Aligned_cols=63 Identities=17% Similarity=0.235 Sum_probs=37.2 Q ss_pred CCCCCCCHHHH--HCC-CCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHH Q ss_conf 26789988885--178-86624888624223457777753025788877672205766899981585389 Q gi|254780663|r 41 CCDSRVAPETI--FNA-KPGELFVVRNVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGG 107 (207) Q Consensus 41 C~DsRv~~~~i--~~~-~~Gd~fv~RnaGn~v~~~~~~~~~~~~~~sle~av~~l~v~~iiV~GHt~CGa 107 (207) +..+|+.+... |.+ -.|...=+.-+-...+. +.-.+.++-||||-..|++.+|+||=+-+..- T Consensus 24 ~f~~~~t~~~~~~W~~vl~~~~Lyv~iP~~~l~~----GsKe~lvaLLE~Aee~L~c~~vvic~~k~r~d 89 (126) T 1zo0_A 24 SIQCTLTEAKQVTWRAVWNGGGLYIELPAGPLPE----GSKDSFAALLEFAEEQLRADHVFICFPKNRED 89 (126) T ss_dssp EEEECCTTSCCEEEEEEEETTEEEEECSSCCCSS----CCSHHHHHHHHHHHHHHCCCCEEEEECCCSSC T ss_pred EEEEEECCCEEEEEEEEEECCEEEEECCCCCCCC----CCHHHHHHHHHHHHHCCCCCEEEEEEECCCHH T ss_conf 9999825443899888986888999877753621----11889999999765503987899999588725 No 49 >1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3 Probab=20.79 E-value=36 Score=13.34 Aligned_cols=71 Identities=13% Similarity=0.126 Sum_probs=44.1 Q ss_pred CHHHHHHHHCCCCCEEEEEECCCCCCCH-----HHHHCCCCCCEEEE---ECCCCCCCCCCCCCCCHHHHHHHHHHHHCC Q ss_conf 9889998623899759999626789988-----88517886624888---624223457777753025788877672205 Q gi|254780663|r 21 DKKLFQELANQQKPKIMIISCCDSRVAP-----ETIFNAKPGELFVV---RNVANIVPPYEPDGQHHATSAAIEFAVQGL 92 (207) Q Consensus 21 ~~~~~~~l~~~q~P~~~vitC~DsRv~~-----~~i~~~~~Gd~fv~---RnaGn~v~~~~~~~~~~~~~~sle~av~~l 92 (207) ++..+.+++.+..|.-++.-|...+..+ +.+...++.-+.++ +++|| +|+|.=.+..+ T Consensus 64 ~~~~l~~~~~~~~~qgv~~~~~~~~~~~~~~~~~~~~~~~~~~~vvLd~i~dp~N--------------lGaiiRta~af 129 (253) T 1gz0_A 64 NRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHN--------------LGACLRSADAA 129 (253) T ss_dssp CSHHHHHTTTSCCCTTEEEEECCCCCCCGGGHHHHHHTCSSCEEEEEESCCCHHH--------------HHHHHHHHHHH T ss_pred CHHHHHHHCCCCCCCCCHHEEECCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCH--------------HHHHHHHHHHC T ss_conf 9999977503433455100010112133566999984668986999955788507--------------99999999972 Q ss_pred CCCEEEEEECCCH Q ss_conf 7668999815853 Q gi|254780663|r 93 NVEHIVVMGHGRC 105 (207) Q Consensus 93 ~v~~iiV~GHt~C 105 (207) |++.|+++++... T Consensus 130 G~~~vil~~~~~~ 142 (253) T 1gz0_A 130 GVHAVIVPKDRSA 142 (253) T ss_dssp TCSEEEEESSSSC T ss_pred CCCEEEECCCCCC T ss_conf 9986830467667 No 50 >3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta hydrolase, PLP degradation, E-2- (acetamidomethylene)succinate; 2.26A {Mesorhizobium loti} Probab=20.21 E-value=37 Score=13.26 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=27.3 Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH Q ss_conf 25788877672205766899981585389887530 Q gi|254780663|r 79 HATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLD 113 (207) Q Consensus 79 ~~~~~sle~av~~l~v~~iiV~GHt~CGav~aa~~ 113 (207) ......|.--+..++.+.++++|||--|.+...+. T Consensus 118 ~~~~~~l~~~l~~l~~~~~~lvGhS~Gg~va~~~a 152 (314) T 3kxp_A 118 NDYADDIAGLIRTLARGHAILVGHSLGARNSVTAA 152 (314) T ss_dssp HHHHHHHHHHHHHHTSSCEEEEEETHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHH T ss_conf 99999999999980999879999547865421233 No 51 >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Probab=20.16 E-value=30 Score=13.81 Aligned_cols=11 Identities=27% Similarity=0.561 Sum_probs=3.5 Q ss_pred EEEEEECCCHH Q ss_conf 89998158538 Q gi|254780663|r 96 HIVVMGHGRCG 106 (207) Q Consensus 96 ~iiV~GHt~CG 106 (207) +|++.|..+|| T Consensus 13 nI~i~G~pG~G 23 (180) T 3iij_A 13 NILLTGTPGVG 23 (180) T ss_dssp CEEEECSTTSS T ss_pred CEEEECCCCCC T ss_conf 57998999988 No 52 >1r5b_A Eukaryotic peptide chain release factor GTP- binding subunit; translation termination, peptide release, GTPase; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A Probab=20.10 E-value=33 Score=13.54 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=25.7 Q ss_pred CCCCHHHHHCCCCCCEEEEECCCCC---CCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE-EECCCH Q ss_conf 8998888517886624888624223---4577777530257888776722057668999-815853 Q gi|254780663|r 44 SRVAPETIFNAKPGELFVVRNVANI---VPPYEPDGQHHATSAAIEFAVQGLNVEHIVV-MGHGRC 105 (207) Q Consensus 44 sRv~~~~i~~~~~Gd~fv~RnaGn~---v~~~~~~~~~~~~~~sle~av~~l~v~~iiV-~GHt~C 105 (207) .+...++++|+...|.-++=..++. ....+. ........+....|+++.|+| +=--|+ T Consensus 132 ~~ylk~~i~G~~~~d~allVV~a~~G~~~~~~~~----~~~t~eh~~l~~~lgi~~iiV~vnK~D~ 193 (467) T 1r5b_A 132 KGYVTNMINGASQADIGVLVISARRGEFEAGFER----GGQTREHAVLARTQGINHLVVVINKMDE 193 (467) T ss_dssp ----------TTSCSEEEEEEECSTTHHHHTTST----TCCHHHHHHHHHHTTCSSEEEEEECTTS T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHH----HHHHHHHHHHHHHCCCCEEEEEEECCCC T ss_conf 8999999987521475407998366864432123----3547999999997299759999941566 Done!