RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780663|ref|YP_003065076.1| carbonate dehydratase [Candidatus Liberibacter asiaticus str. psy62] (207 letters) >d1i6pa_ c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia coli [TaxId: 562]} Length = 214 Score = 167 bits (424), Expect = 6e-43 Identities = 55/198 (27%), Positives = 97/198 (48%), Gaps = 9/198 (4%) Query: 8 LLERHREFIQDQY--DKKLFQELANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNV 65 L+ + + + D F++LA QKP+ + I C DSRV E + +PGELFV RNV Sbjct: 6 LISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNV 65 Query: 66 ANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFI 125 AN+V + + + +++AV L VEHI++ GH CGG+QA +++ +++ Sbjct: 66 ANLVIHTDLN-----CLSVVQYAVDVLEVEHIIICGHYGCGGVQAAVENPELGLIN-NWL 119 Query: 126 GKWMDIVRPIAQKIVANNPTEKQTILEQLSIRNSLKNIRNFPFV-NKLEKEHMLQIHGAW 184 DI + + + L +L++ + N+ + + + ++ + IHG Sbjct: 120 LHIRDIWFKHSSLLGEMPQERRLDTLCELNVMEQVYNLGHSTIMQSAWKRGQKVTIHGWA 179 Query: 185 FDISSGKLWILDPTSNEF 202 + I G L LD T+ Sbjct: 180 YGIHDGLLRDLDVTATNR 197 >d1ddza2 c.53.2.1 (A:326-564) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Length = 239 Score = 167 bits (423), Expect = 8e-43 Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 8/200 (4%) Query: 6 NTLLERHREFIQDQY--DKKLFQELANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVR 63 N + + + Q D + F LA+ Q P+I+ I C DSRV I N GE+FV R Sbjct: 41 NRVFVNNENWRQKMLKQDPQFFSNLAHTQTPEILWIGCADSRVPANQIINLPAGEVFVHR 100 Query: 64 NVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGD 123 N+AN + + + +++AVQ L V+ +VV GH CGG A L + Sbjct: 101 NIANQCIHSD-----MSFLSVLQYAVQYLKVKRVVVCGHYACGGCAAALGDSRLGLIDNW 155 Query: 124 FIGKWMDIVRPIAQKIVANNPTEKQTILEQLSIRNSLKNIRNFPFV-NKLEKEHMLQIHG 182 A+ +P + L ++++ + N+ V + + L++ G Sbjct: 156 LRHIRDVRRHNQAELSRITDPKDSLNRLIEINVLEQMHNVCATSIVQDAWDAGQELEVQG 215 Query: 183 AWFDISSGKLWILDPTSNEF 202 + + GKL + + Sbjct: 216 VVYGVGDGKLRDMGVVAKAN 235 >d1ekja_ c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum sativum) [TaxId: 3888]} Length = 210 Score = 162 bits (410), Expect = 3e-41 Identities = 71/202 (35%), Positives = 105/202 (51%), Gaps = 7/202 (3%) Query: 8 LLERHREFIQDQY--DKKLFQELANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNV 65 + F +++Y + L+ ELA Q P M+ +C DSRV P + + +PGE FVVRNV Sbjct: 6 IKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNV 65 Query: 66 ANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFI 125 AN+VPPY+ ++ T AAIE+AV L V +IVV+GH CGGI+ +L T DFI Sbjct: 66 ANLVPPYD-QAKYAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYSTDFI 124 Query: 126 GKWMDIVRPIAQKIVAN----NPTEKQTILEQLSIRNSLKNIRNFPFVNKLEKEHMLQIH 181 +W+ I P K+ A E T E+ ++ SL N+ +PFV + L + Sbjct: 125 EEWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVNASLGNLLTYPFVREGLVNKTLALK 184 Query: 182 GAWFDISSGKLWILDPTSNEFT 203 G ++D G + + Sbjct: 185 GGYYDFVKGSFELWGLEFGLSS 206 >d1ddza1 c.53.2.1 (A:84-325) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Length = 242 Score = 159 bits (404), Expect = 1e-40 Identities = 49/200 (24%), Positives = 83/200 (41%), Gaps = 8/200 (4%) Query: 6 NTLLERHREFIQDQY--DKKLFQELANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVR 63 + + + + Q+ D + F LAN Q P+ + I C DSRV + + GE+FV R Sbjct: 29 SNIFANNEAWRQEMLKQDPEFFNRLANGQSPEYLWIGCADSRVPANQLLDLPAGEVFVHR 88 Query: 64 NVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGD 123 N+AN + + + +++AVQ L V+HI+V GH CGG +A L + Sbjct: 89 NIANQCIHSD-----ISFLSVLQYAVQYLKVKHILVCGHYGCGGAKAALGDSRLGLIDNW 143 Query: 124 FIGKWMDIVRPIAQKIVANNPTEKQTILEQLSIRNSLKNIRNFPFV-NKLEKEHMLQIHG 182 + E+ L +L++ + N+ V + + L + G Sbjct: 144 LRHIRDVRRMNAKYLDKCKDGDEELNRLIELNVLEQVHNVCATSIVQDAWDAGQELTVQG 203 Query: 183 AWFDISSGKLWILDPTSNEF 202 + + GKL L N Sbjct: 204 VVYGVGDGKLRDLGVVVNSS 223 >d1g5ca_ c.53.2.1 (A:) beta-carbonic anhydrase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 169 Score = 128 bits (322), Expect = 4e-31 Identities = 40/193 (20%), Positives = 79/193 (40%), Gaps = 35/193 (18%) Query: 8 LLERHREFIQDQYDKKLFQELAN-QQKPKIMIISCCDSRVAP--ETIFNAKPGELFVVRN 64 +L +++F F++L++ + PK+ II+C DSR+ E G+ V++N Sbjct: 5 ILRENQDFR--------FRDLSDLKHSPKLCIITCMDSRLIDLLERALGIGRGDAKVIKN 56 Query: 65 VANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDF 124 NIV + A+ L I+++GH CG + D Sbjct: 57 AGNIV--------DDGVIRSAAVAIYALGDNEIIIVGHTDCGMARL----------DEDL 98 Query: 125 IGKWMDIVRPIAQKIVANNPTEKQTI-LEQLSIRNSLKNIRNFPFVNKLEKEHMLQIHGA 183 I M + + I + + E+ ++ +K +++ P + + + +HG Sbjct: 99 IVSRMRELGVEEEVIENFSIDVLNPVGDEEENVIEGVKRLKSSPLIPE-----SIGVHGL 153 Query: 184 WFDISSGKLWILD 196 DI++G+L L Sbjct: 154 IIDINTGRLKPLY 166 >d1zo0a1 d.108.1.7 (A:94-219) Ornithine decarboxylase antizyme {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126 Score = 27.0 bits (60), Expect = 1.0 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 10/84 (11%) Query: 21 DKKL--FQELANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPY--EPDG 76 D++L +E + K +++ + I P P+G Sbjct: 5 DERLNVTEEPTSNDKTRVL---SIQCTLTEAKQVTW---RAVWNGGGLYIELPAGPLPEG 58 Query: 77 QHHATSAAIEFAVQGLNVEHIVVM 100 + +A +EFA + L +H+ + Sbjct: 59 SKDSFAALLEFAEEQLRADHVFIC 82 >d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 84 Score = 26.4 bits (58), Expect = 1.7 Identities = 9/45 (20%), Positives = 19/45 (42%) Query: 74 PDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSS 118 PDG + + V +V MG + +A ++++N+ Sbjct: 13 PDGVPEEVMESAQPVANEEIVAQLVSMGFSQLHCQKAAINTSNAG 57 >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Length = 295 Score = 26.2 bits (56), Expect = 2.5 Identities = 7/20 (35%), Positives = 9/20 (45%) Query: 184 WFDISSGKLWILDPTSNEFT 203 WF+I +L L S T Sbjct: 34 WFNILERELHELHLASGRKT 53 >d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} Length = 390 Score = 26.0 bits (56), Expect = 2.7 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 6/39 (15%) Query: 68 IVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVM---GHG 103 I+P E HA + A++ + E ++V+ G G Sbjct: 344 IIPALESS---HALAHALKMMREQPEKEQLLVVNLSGRG 379 >d1dkia_ d.3.1.1 (A:) Streptococcal pyrogenic exotoxin B {Streptococcus pyogenes [TaxId: 1314]} Length = 335 Score = 24.6 bits (53), Expect = 6.6 Identities = 11/65 (16%), Positives = 23/65 (35%) Query: 96 HIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPTEKQTILEQLS 155 ++V G R I S + + + I +M+ ++ + T T + Sbjct: 25 FVIVSGDKRSPEILGYSTSGSFDVNGKENIASFMESYVEQIKENKKLDSTYAGTAEIKQP 84 Query: 156 IRNSL 160 + SL Sbjct: 85 VVKSL 89 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.320 0.135 0.410 Gapped Lambda K H 0.267 0.0418 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 787,342 Number of extensions: 34695 Number of successful extensions: 112 Number of sequences better than 10.0: 1 Number of HSP's gapped: 101 Number of HSP's successfully gapped: 11 Length of query: 207 Length of database: 2,407,596 Length adjustment: 81 Effective length of query: 126 Effective length of database: 1,295,466 Effective search space: 163228716 Effective search space used: 163228716 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.2 bits)