RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780663|ref|YP_003065076.1| carbonate dehydratase
[Candidatus Liberibacter asiaticus str. psy62]
         (207 letters)



>d1i6pa_ c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia coli
           [TaxId: 562]}
          Length = 214

 Score =  167 bits (424), Expect = 6e-43
 Identities = 55/198 (27%), Positives = 97/198 (48%), Gaps = 9/198 (4%)

Query: 8   LLERHREFIQDQY--DKKLFQELANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNV 65
           L+  +  + +     D   F++LA  QKP+ + I C DSRV  E +   +PGELFV RNV
Sbjct: 6   LISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNV 65

Query: 66  ANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFI 125
           AN+V   + +       + +++AV  L VEHI++ GH  CGG+QA +++        +++
Sbjct: 66  ANLVIHTDLN-----CLSVVQYAVDVLEVEHIIICGHYGCGGVQAAVENPELGLIN-NWL 119

Query: 126 GKWMDIVRPIAQKIVANNPTEKQTILEQLSIRNSLKNIRNFPFV-NKLEKEHMLQIHGAW 184
               DI    +  +       +   L +L++   + N+ +   + +  ++   + IHG  
Sbjct: 120 LHIRDIWFKHSSLLGEMPQERRLDTLCELNVMEQVYNLGHSTIMQSAWKRGQKVTIHGWA 179

Query: 185 FDISSGKLWILDPTSNEF 202
           + I  G L  LD T+   
Sbjct: 180 YGIHDGLLRDLDVTATNR 197


>d1ddza2 c.53.2.1 (A:326-564) beta-carbonic anhydrase {Red alga
           (Porphyridium purpureum) [TaxId: 35688]}
          Length = 239

 Score =  167 bits (423), Expect = 8e-43
 Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 8/200 (4%)

Query: 6   NTLLERHREFIQDQY--DKKLFQELANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVR 63
           N +   +  + Q     D + F  LA+ Q P+I+ I C DSRV    I N   GE+FV R
Sbjct: 41  NRVFVNNENWRQKMLKQDPQFFSNLAHTQTPEILWIGCADSRVPANQIINLPAGEVFVHR 100

Query: 64  NVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGD 123
           N+AN     +      +  + +++AVQ L V+ +VV GH  CGG  A L  +        
Sbjct: 101 NIANQCIHSD-----MSFLSVLQYAVQYLKVKRVVVCGHYACGGCAAALGDSRLGLIDNW 155

Query: 124 FIGKWMDIVRPIAQKIVANNPTEKQTILEQLSIRNSLKNIRNFPFV-NKLEKEHMLQIHG 182
                       A+     +P +    L ++++   + N+     V +  +    L++ G
Sbjct: 156 LRHIRDVRRHNQAELSRITDPKDSLNRLIEINVLEQMHNVCATSIVQDAWDAGQELEVQG 215

Query: 183 AWFDISSGKLWILDPTSNEF 202
             + +  GKL  +   +   
Sbjct: 216 VVYGVGDGKLRDMGVVAKAN 235


>d1ekja_ c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum sativum)
           [TaxId: 3888]}
          Length = 210

 Score =  162 bits (410), Expect = 3e-41
 Identities = 71/202 (35%), Positives = 105/202 (51%), Gaps = 7/202 (3%)

Query: 8   LLERHREFIQDQY--DKKLFQELANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNV 65
           +      F +++Y  +  L+ ELA  Q P  M+ +C DSRV P  + + +PGE FVVRNV
Sbjct: 6   IKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNV 65

Query: 66  ANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFI 125
           AN+VPPY+   ++  T AAIE+AV  L V +IVV+GH  CGGI+ +L      T   DFI
Sbjct: 66  ANLVPPYD-QAKYAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYSTDFI 124

Query: 126 GKWMDIVRPIAQKIVAN----NPTEKQTILEQLSIRNSLKNIRNFPFVNKLEKEHMLQIH 181
            +W+ I  P   K+ A        E  T  E+ ++  SL N+  +PFV +      L + 
Sbjct: 125 EEWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVNASLGNLLTYPFVREGLVNKTLALK 184

Query: 182 GAWFDISSGKLWILDPTSNEFT 203
           G ++D   G   +        +
Sbjct: 185 GGYYDFVKGSFELWGLEFGLSS 206


>d1ddza1 c.53.2.1 (A:84-325) beta-carbonic anhydrase {Red alga
           (Porphyridium purpureum) [TaxId: 35688]}
          Length = 242

 Score =  159 bits (404), Expect = 1e-40
 Identities = 49/200 (24%), Positives = 83/200 (41%), Gaps = 8/200 (4%)

Query: 6   NTLLERHREFIQDQY--DKKLFQELANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVR 63
           + +   +  + Q+    D + F  LAN Q P+ + I C DSRV    + +   GE+FV R
Sbjct: 29  SNIFANNEAWRQEMLKQDPEFFNRLANGQSPEYLWIGCADSRVPANQLLDLPAGEVFVHR 88

Query: 64  NVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGD 123
           N+AN     +      +  + +++AVQ L V+HI+V GH  CGG +A L  +        
Sbjct: 89  NIANQCIHSD-----ISFLSVLQYAVQYLKVKHILVCGHYGCGGAKAALGDSRLGLIDNW 143

Query: 124 FIGKWMDIVRPIAQKIVANNPTEKQTILEQLSIRNSLKNIRNFPFV-NKLEKEHMLQIHG 182
                              +  E+   L +L++   + N+     V +  +    L + G
Sbjct: 144 LRHIRDVRRMNAKYLDKCKDGDEELNRLIELNVLEQVHNVCATSIVQDAWDAGQELTVQG 203

Query: 183 AWFDISSGKLWILDPTSNEF 202
             + +  GKL  L    N  
Sbjct: 204 VVYGVGDGKLRDLGVVVNSS 223


>d1g5ca_ c.53.2.1 (A:) beta-carbonic anhydrase {Archaeon
           Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 169

 Score =  128 bits (322), Expect = 4e-31
 Identities = 40/193 (20%), Positives = 79/193 (40%), Gaps = 35/193 (18%)

Query: 8   LLERHREFIQDQYDKKLFQELAN-QQKPKIMIISCCDSRVAP--ETIFNAKPGELFVVRN 64
           +L  +++F         F++L++ +  PK+ II+C DSR+    E       G+  V++N
Sbjct: 5   ILRENQDFR--------FRDLSDLKHSPKLCIITCMDSRLIDLLERALGIGRGDAKVIKN 56

Query: 65  VANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDF 124
             NIV              +   A+  L    I+++GH  CG  +             D 
Sbjct: 57  AGNIV--------DDGVIRSAAVAIYALGDNEIIIVGHTDCGMARL----------DEDL 98

Query: 125 IGKWMDIVRPIAQKIVANNPTEKQTI-LEQLSIRNSLKNIRNFPFVNKLEKEHMLQIHGA 183
           I   M  +    + I   +      +  E+ ++   +K +++ P + +      + +HG 
Sbjct: 99  IVSRMRELGVEEEVIENFSIDVLNPVGDEEENVIEGVKRLKSSPLIPE-----SIGVHGL 153

Query: 184 WFDISSGKLWILD 196
             DI++G+L  L 
Sbjct: 154 IIDINTGRLKPLY 166


>d1zo0a1 d.108.1.7 (A:94-219) Ornithine decarboxylase antizyme {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 126

 Score = 27.0 bits (60), Expect = 1.0
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 10/84 (11%)

Query: 21  DKKL--FQELANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPY--EPDG 76
           D++L   +E  +  K +++        +                     I  P    P+G
Sbjct: 5   DERLNVTEEPTSNDKTRVL---SIQCTLTEAKQVTW---RAVWNGGGLYIELPAGPLPEG 58

Query: 77  QHHATSAAIEFAVQGLNVEHIVVM 100
              + +A +EFA + L  +H+ + 
Sbjct: 59  SKDSFAALLEFAEEQLRADHVFIC 82


>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 84

 Score = 26.4 bits (58), Expect = 1.7
 Identities = 9/45 (20%), Positives = 19/45 (42%)

Query: 74  PDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSS 118
           PDG       + +       V  +V MG  +    +A ++++N+ 
Sbjct: 13  PDGVPEEVMESAQPVANEEIVAQLVSMGFSQLHCQKAAINTSNAG 57


>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens
           [TaxId: 358]}
          Length = 295

 Score = 26.2 bits (56), Expect = 2.5
 Identities = 7/20 (35%), Positives = 9/20 (45%)

Query: 184 WFDISSGKLWILDPTSNEFT 203
           WF+I   +L  L   S   T
Sbjct: 34  WFNILERELHELHLASGRKT 53


>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella
           typhimurium [TaxId: 90371]}
          Length = 390

 Score = 26.0 bits (56), Expect = 2.7
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 6/39 (15%)

Query: 68  IVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVM---GHG 103
           I+P  E     HA + A++   +    E ++V+   G G
Sbjct: 344 IIPALESS---HALAHALKMMREQPEKEQLLVVNLSGRG 379


>d1dkia_ d.3.1.1 (A:) Streptococcal pyrogenic exotoxin B
           {Streptococcus pyogenes [TaxId: 1314]}
          Length = 335

 Score = 24.6 bits (53), Expect = 6.6
 Identities = 11/65 (16%), Positives = 23/65 (35%)

Query: 96  HIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPTEKQTILEQLS 155
            ++V G  R   I     S +   +  + I  +M+      ++    + T   T   +  
Sbjct: 25  FVIVSGDKRSPEILGYSTSGSFDVNGKENIASFMESYVEQIKENKKLDSTYAGTAEIKQP 84

Query: 156 IRNSL 160
           +  SL
Sbjct: 85  VVKSL 89


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0418    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 787,342
Number of extensions: 34695
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 11
Length of query: 207
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,295,466
Effective search space: 163228716
Effective search space used: 163228716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.2 bits)