HHsearch alignment for GI: 254780664 and conserved domain: cd01423

>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=98.63  E-value=1.1e-07  Score=76.29  Aligned_cols=112  Identities=35%  Similarity=0.497  Sum_probs=73.5

Q ss_pred             EEEEEEEEC--CCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             698998754--568699999999879999994276899998899517946534881651985532371555355330889
Q gi|254780664|r   17 KTALISVHN--KTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDN   94 (536)
Q Consensus        17 krALiSV~d--Ktgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~~   94 (536)
T Consensus         1 KnVliSv~d~dK~~~l~~a~~l~~lGf~l~AT~GTa~~l~~~Gi~~~~v~k~~e~~--~~~~-----p~i----------   63 (116)
T cd01423           1 KGILISIGSYSKPELLPTAQKLSKLGYKLYATEGTADFLLENGIPVTPVAWPSEEP--QNDK-----PSL----------   63 (116)
T ss_pred             CEEEEEEEHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCEEEEEECCCC--CCCC-----CCH----------
T ss_conf             92999940203899999999999879999984189999998699657987862467--8999-----669----------


Q ss_pred             HHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHH
Q ss_conf             899999997799841499994888899731765311232002334346999874015631353089998988
Q gi|254780664|r   95 PAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLF  166 (536)
Q Consensus        95 ~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~  166 (536)
T Consensus        64 ---~d~i~~---g~i~lVI-Ntp~-----~~~~~------~~~-~g-~~iRr~Av~-~~Ip~~T~~~~A~~~  114 (116)
T cd01423          64 ---RELLAE---GKIDLVI-NLPS-----NRGKR------VLD-ND-YVMRRAADD-FAVPLITNPKCAKLF  114 (116)
T ss_pred             ---HHHHHC---CCEEEEE-ECCC-----CCCCC------CCC-CC-HHHHHHHHH-CCCCEEECHHHHHHH
T ss_conf             ---999976---9868999-8889-----99864------335-45-899999997-599989779999987