HHsearch alignment for GI: 254780664 and conserved domain: pfam06506

>pfam06506 PrpR_N Propionate catabolism activator. This domain is found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate.
Probab=92.78  E-value=0.66  Score=27.15  Aligned_cols=126  Identities=21%  Similarity=0.349  Sum_probs=64.4

Q ss_pred             EEEEEECCC--CHHHHHHHHHHCCCE-EEEEHHHHHHHHHC-CCCEEEHHHHCCCCHHCC--CCCCCCCCHHHHHHHHCC
Q ss_conf             899875456--869999999987999-99942768999988-995179465348816519--855323715553553308
Q gi|254780664|r   19 ALISVHNKT--GVVEFASRLLSRGIK-IISTGGTCQLLEEE-GIPVTSVFDITKFPEIMG--GRVKTLHPKIYGGILSIR   92 (536)
Q Consensus        19 ALiSV~dKt--gl~~la~~L~~~g~~-iisTgGTa~~l~~~-gi~v~~Vs~~TgfpEil~--GRVKTLHP~I~ggIL~~r   92 (536)
T Consensus         9 ~~i~v~~~~l~~av~~a~~~~~~g~dvIIsRGgta~~ir~~~~iPVv~I~-~s~~D-il~al~~a~~~~~ki--avvg~~   84 (169)
T pfam06506         9 ADVEVVDGGLEDAVEVARALVAEGVDVIISRGGTAAYLRDRLSVPVVEIK-VSGFD-LLRALARARRYGGRI--GLVGYE   84 (169)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCEEEEE-CCHHH-HHHHHHHHHHHCCCE--EEEECC
T ss_conf             72799977789999999999977995999896589999985899889982-78869-999999999758979--999276


Q ss_pred             CCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCH-HHHHHCCCCCCHHHHHHHHCCC
Q ss_conf             8989999999779984149999488889973176531-1232002334346999874015
Q gi|254780664|r   93 DNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDY-YTMVENIDIGGPSMIRAAAKNH  151 (536)
Q Consensus        93 ~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~-~~~IEnIDIGGpsmiRAAAKN~  151 (536)
T Consensus        85 ~~~~~~~~~~~i--l~~~i~~~~~~~~~e~~~~i~~l~~~G~-~vvVG~~~~~~~A~~~G  141 (169)
T pfam06506        85 NIIPGLKALSEL--LGLDIVQRAYQSEEEARAAVKELKAQGI-KVIVGDGLVCDLAEQAG  141 (169)
T ss_pred             CCCHHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHHCCC-EEEECCCHHHHHHHHCC
T ss_conf             303689999999--6993599996688999999999998699-59985828999999839