Query gi|254780664|ref|YP_003065077.1| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 536 No_of_seqs 170 out of 2250 Neff 4.9 Searched_HMMs 23785 Date Tue May 31 17:17:17 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780664.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1g8m_A Aicar transformylase-IM 100.0 0 0 1607.8 44.5 509 14-536 3-593 (593) 2 1zcz_A Bifunctional purine bio 100.0 0 0 1488.7 40.2 458 10-536 7-464 (464) 3 2yvq_A Carbamoyl-phosphate syn 99.1 7.5E-10 3.2E-14 90.6 9.4 123 11-171 19-143 (143) 4 1a9x_A Carbamoyl phosphate syn 98.7 2.1E-07 8.9E-12 72.8 11.6 183 107-300 350-610 (1073) 5 1vmd_A MGS, methylglyoxal synt 98.1 5.6E-05 2.4E-09 55.2 10.9 119 16-174 28-150 (178) 6 1wo8_A Methylglyoxal synthase; 98.1 1E-05 4.4E-10 60.5 7.0 117 16-172 1-122 (126) 7 1b93_A Protein (methylglyoxal 97.7 0.00028 1.2E-08 50.1 9.6 116 18-173 14-133 (152) 8 2pju_A Propionate catabolism o 94.7 0.078 3.3E-06 32.3 6.3 134 18-158 38-179 (225) 9 2hvw_A Deoxycytidylate deamina 94.6 0.29 1.2E-05 28.2 9.7 104 418-528 46-173 (184) 10 2q5c_A NTRC family transcripti 91.8 0.13 5.3E-06 30.8 3.6 130 30-167 42-177 (196) 11 1iuk_A Hypothetical protein TT 86.9 0.62 2.6E-05 25.8 4.1 40 488-529 83-123 (140) 12 3ff4_A Uncharacterized protein 86.4 0.98 4.1E-05 24.3 4.8 38 489-528 72-110 (122) 13 1y81_A Conserved hypothetical 85.2 0.86 3.6E-05 24.7 4.1 36 490-527 84-120 (138) 14 2d59_A Hypothetical protein PH 84.8 0.97 4.1E-05 24.4 4.2 38 489-528 91-129 (144) 15 2v82_A 2-dehydro-3-deoxy-6-pho 82.4 1.7 7.3E-05 22.5 4.7 84 266-360 17-100 (212) 16 1wa3_A 2-keto-3-deoxy-6-phosph 81.9 1.5 6.4E-05 23.0 4.2 39 321-359 64-102 (205) 17 1vhc_A Putative KHG/KDPG aldol 81.9 1.2 5.2E-05 23.6 3.8 89 260-360 21-109 (224) 18 1mxs_A KDPG aldolase; 2-keto-3 81.1 0.94 4E-05 24.5 3.0 92 257-360 27-118 (225) 19 2yw3_A 4-hydroxy-2-oxoglutarat 80.8 1.3 5.6E-05 23.4 3.6 86 261-360 18-103 (207) 20 1wbh_A KHG/KDPG aldolase; lyas 78.8 1.5 6.3E-05 23.0 3.4 94 255-360 15-108 (214) 21 3d8t_A Uroporphyrinogen-III sy 75.6 4.2 0.00017 19.8 6.1 17 155-171 88-104 (286) 22 2b3j_A TRNA adenosine deaminas 75.5 3.4 0.00014 20.4 4.4 66 434-504 32-102 (159) 23 2ioj_A Hypothetical protein AF 73.9 1.7 7.3E-05 22.5 2.6 45 490-534 64-109 (139) 24 3lab_A Putative KDPG (2-keto-3 73.0 1.5 6.3E-05 23.0 2.1 89 260-360 17-105 (217) 25 3iaa_A CALG2; glycosyltransfer 71.5 5.1 0.00022 19.1 5.1 114 5-120 9-130 (416) 26 3ia7_A CALG4; glycosysltransfe 68.4 5.9 0.00025 18.7 7.2 106 15-121 3-115 (402) 27 2duw_A Putative COA-binding pr 68.3 5.4 0.00023 18.9 4.1 37 490-527 85-121 (145) 28 1zmt_A Haloalcohol dehalogenas 66.9 3.1 0.00013 20.7 2.6 39 16-54 1-39 (254) 29 2isb_A Fumarase, FUM-1; NP_069 66.4 4.9 0.00021 19.2 3.6 30 329-358 100-130 (192) 30 1o8b_A Ribose 5-phosphate isom 64.8 2 8.5E-05 22.0 1.4 31 133-163 90-122 (219) 31 2w4l_A DCMP deaminse, deoxycyt 60.5 8.2 0.00034 17.6 6.7 53 474-527 94-150 (178) 32 1wkq_A Guanine deaminase; doma 55.1 10 0.00042 17.0 9.2 85 416-505 17-108 (164) 33 2b3z_A Riboflavin biosynthesis 53.6 10 0.00044 16.8 7.2 33 493-525 265-297 (373) 34 2pjm_A Ribose-5-phosphate isom 53.4 11 0.00044 16.8 3.5 30 134-163 94-125 (226) 35 3kwm_A Ribose-5-phosphate isom 53.2 9.7 0.00041 17.1 3.2 61 95-163 60-128 (224) 36 1z3a_A TRNA-specific adenosine 52.6 11 0.00046 16.7 6.1 27 319-345 78-105 (168) 37 2g6v_A Riboflavin biosynthesis 52.0 11 0.00047 16.7 6.3 38 482-523 302-339 (402) 38 2pb2_A Acetylornithine/succiny 51.5 8.5 0.00036 17.5 2.7 18 504-521 393-410 (420) 39 3iv4_A Putative oxidoreductase 51.2 7 0.0003 18.1 2.2 33 283-317 25-57 (112) 40 1p6o_A Cytosine deaminase; hyd 51.1 11 0.00048 16.6 5.8 68 432-505 38-111 (161) 41 3p9z_A Uroporphyrinogen III co 50.7 12 0.00049 16.5 5.1 30 493-524 197-226 (229) 42 3kd8_A 2,3-bisphosphoglycerate 49.1 5.1 0.00022 19.1 1.3 11 15-25 3-13 (399) 43 2nx8_A TRNA-specific adenosine 47.8 13 0.00054 16.2 6.3 66 434-504 41-111 (179) 44 2gzx_A Putative TATD related D 47.7 13 0.00054 16.2 3.2 29 144-172 23-52 (265) 45 2hxv_A Diaminohydroxyphosphori 46.7 13 0.00056 16.1 8.5 17 492-508 279-295 (360) 46 1jr2_A Uroporphyrinogen-III sy 46.7 13 0.00056 16.1 4.7 58 98-173 41-98 (286) 47 1vef_A Acetylornithine/acetyl- 46.0 10 0.00043 17.0 2.4 17 504-520 372-388 (395) 48 2vld_A NUCS, UPF0286 protein p 45.6 11 0.00046 16.7 2.5 29 341-370 204-232 (251) 49 1yxm_A Pecra, peroxisomal tran 45.1 14 0.00059 15.9 3.8 97 6-117 8-109 (303) 50 1m0s_A Ribose-5-phosphate isom 45.0 14 0.00059 15.9 7.1 64 94-163 53-122 (219) 51 1mkz_A Molybdenum cofactor bio 44.9 14 0.00059 15.9 5.1 16 14-29 9-24 (172) 52 1z7d_A Ornithine aminotransfer 44.6 14 0.0006 15.9 3.7 17 504-520 404-420 (433) 53 2x4l_A Ferric-siderophore rece 43.3 5.1 0.00021 19.1 0.5 92 21-121 29-123 (325) 54 1wwr_A TRNA adenosine deaminas 41.4 16 0.00067 15.6 6.6 84 416-505 29-119 (171) 55 3e2v_A 3'-5'-exonuclease; stru 40.7 15 0.00063 15.7 2.6 47 321-367 250-300 (401) 56 1y8a_A Hypothetical protein AF 40.4 15 0.00064 15.7 2.6 27 139-165 107-133 (332) 57 1yo6_A Putative carbonyl reduc 39.4 17 0.00071 15.3 2.8 79 17-117 4-90 (250) 58 2ip4_A PURD, phosphoribosylami 39.3 17 0.00071 15.3 4.2 19 252-270 181-199 (417) 59 1qb7_A APRT, adenine phosphori 38.8 7.7 0.00033 17.8 0.9 26 284-313 140-165 (236) 60 3ipw_A Hydrolase TATD family p 38.5 17 0.00072 15.3 2.6 30 143-172 58-88 (325) 61 3civ_A Endo-beta-1,4-mannanase 38.1 18 0.00074 15.2 5.2 19 96-114 57-75 (343) 62 1kid_A Groel (HSP60 class); ch 38.0 13 0.00055 16.2 1.9 98 343-462 75-183 (203) 63 2pjk_A 178AA long hypothetical 37.8 18 0.00075 15.2 3.9 54 5-64 5-60 (178) 64 2rbg_A Putative uncharacterize 37.7 18 0.00075 15.2 3.4 61 97-172 24-84 (126) 65 2yw2_A Phosphoribosylamine--gl 36.6 19 0.00078 15.0 5.3 62 97-170 106-169 (424) 66 1p3d_A UDP-N-acetylmuramate--a 36.5 19 0.00079 15.0 5.8 50 13-62 15-68 (475) 67 1rh9_A Endo-beta-mannanase; en 36.3 19 0.00079 15.0 4.6 19 94-112 44-62 (373) 68 1ve4_A ATP phosphoribosyltrans 35.9 10 0.00044 16.9 1.1 55 48-115 18-72 (206) 69 2b82_A APHA, class B acid phos 35.6 16 0.00067 15.6 2.0 21 350-370 90-112 (211) 70 3fuy_A HFX_CASS1, putative int 35.2 7.1 0.0003 18.1 0.2 60 430-491 105-173 (179) 71 2f46_A Hypothetical protein; 7 34.9 20 0.00083 14.9 4.9 21 343-364 24-44 (156) 72 1srv_A Protein (groel (HSP60 c 34.9 16 0.00065 15.6 1.9 28 343-370 57-87 (145) 73 2vc7_A Aryldialkylphosphatase; 34.9 20 0.00083 14.9 4.4 10 409-418 295-304 (314) 74 2xio_A Putative deoxyribonucle 32.9 11 0.00047 16.6 0.9 29 144-172 34-63 (301) 75 3gxh_A Putative phosphatase (D 32.5 21 0.0009 14.6 5.1 78 79-175 17-97 (157) 76 1zpv_A ACT domain protein; str 32.2 22 0.00091 14.6 5.2 30 18-47 5-37 (91) 77 1wcw_A Uroporphyrinogen III sy 31.9 22 0.00092 14.5 8.0 70 87-173 12-81 (261) 78 1vff_A Beta-glucosidase; glyco 31.9 14 0.0006 15.9 1.3 20 420-440 308-327 (423) 79 1uqt_A Alpha, alpha-trehalose- 31.8 22 0.00092 14.5 3.1 39 320-359 332-374 (482) 80 3ke8_A 4-hydroxy-3-methylbut-2 31.7 12 0.00049 16.5 0.8 31 72-110 38-68 (326) 81 1u83_A Phosphosulfolactate syn 31.1 23 0.00095 14.4 4.7 33 287-320 68-100 (276) 82 2g0w_A LMO2234 protein; putati 30.9 23 0.00096 14.4 2.7 67 4-70 13-94 (296) 83 3jyv_I 40S ribosomal protein S 30.6 23 0.00097 14.4 2.4 21 444-464 65-85 (138) 84 1o63_A ATP phosphoribosyltrans 30.4 12 0.00052 16.3 0.8 27 344-370 105-132 (219) 85 1hxh_A 3BETA/17BETA-hydroxyste 30.0 14 0.00059 15.9 1.0 85 12-117 2-89 (253) 86 3eag_A UDP-N-acetylmuramate:L- 29.8 24 0.001 14.3 6.6 47 15-61 3-54 (326) 87 3dmy_A Protein FDRA; predicted 29.6 24 0.001 14.3 2.9 10 493-502 442-451 (480) 88 1ydh_A AT5G11950; structural g 29.3 24 0.001 14.2 5.4 55 9-63 2-71 (216) 89 1g2q_A Adenine phosphoribosylt 28.9 21 0.00088 14.7 1.7 22 150-171 26-48 (187) 90 3hhe_A Ribose-5-phosphate isom 28.7 25 0.001 14.2 3.6 15 146-160 128-142 (255) 91 2iya_A OLEI, oleandomycin glyc 28.5 25 0.001 14.1 6.1 102 17-119 13-120 (424) 92 1j5w_A Glycyl-tRNA synthetase 28.3 18 0.00074 15.2 1.3 20 221-240 69-88 (298) 93 3ju2_A Uncharacterized protein 27.8 26 0.0011 14.0 5.2 22 24-45 16-37 (284) 94 3kg2_A Glutamate receptor 2; I 27.8 26 0.0011 14.0 6.5 88 19-118 39-133 (823) 95 1k77_A EC1530, hypothetical pr 27.6 26 0.0011 14.0 5.2 17 262-278 153-169 (260) 96 1ujp_A Tryptophan synthase alp 27.4 26 0.0011 14.0 4.3 18 267-286 190-207 (271) 97 3dnf_A ISPH, LYTB, 4-hydroxy-3 27.3 16 0.00066 15.6 0.9 30 73-110 30-59 (297) 98 2xij_A Methylmalonyl-COA mutas 27.3 26 0.0011 14.0 3.4 110 426-536 600-754 (762) 99 2ji4_A Phosphoribosyl pyrophos 27.0 23 0.00099 14.3 1.7 64 426-506 268-331 (379) 100 1i60_A IOLI protein; beta barr 26.9 26 0.0011 13.9 3.2 22 23-44 10-31 (278) 101 3eoo_A Methylisocitrate lyase; 26.6 21 0.0009 14.6 1.4 22 272-293 102-123 (298) 102 3grp_A 3-oxoacyl-(acyl carrier 26.5 27 0.0011 13.9 2.6 84 13-118 24-111 (266) 103 1lk5_A D-ribose-5-phosphate is 26.4 27 0.0011 13.9 3.4 83 30-163 37-126 (229) 104 2zkq_i 40S ribosomal protein S 26.2 17 0.00072 15.3 0.9 22 444-465 73-94 (146) 105 1s2w_A Phosphoenolpyruvate pho 26.2 18 0.00075 15.2 1.0 34 32-65 11-47 (295) 106 1rd5_A Tryptophan synthase alp 26.1 27 0.0011 13.8 4.3 19 260-278 72-90 (262) 107 3dh1_A TRNA-specific adenosine 26.1 27 0.0011 13.8 5.7 70 434-504 51-127 (189) 108 1uj6_A Ribose 5-phosphate isom 25.8 28 0.0012 13.8 7.2 31 133-163 95-127 (227) 109 3ipc_A ABC transporter, substr 25.6 28 0.0012 13.8 6.9 16 29-44 58-73 (356) 110 2vqe_I 30S ribosomal protein S 25.5 18 0.00075 15.2 0.9 22 444-465 66-87 (128) 111 1tz9_A Mannonate dehydratase; 24.8 29 0.0012 13.7 2.1 69 75-150 38-107 (367) 112 3ofo_I 30S ribosomal protein S 24.8 19 0.00079 15.0 0.9 21 444-464 65-85 (127) 113 1z7m_E ATP phosphoribosyltrans 24.6 18 0.00077 15.1 0.8 15 48-62 14-28 (208) 114 1j6o_A TATD-related deoxyribon 24.4 24 0.001 14.2 1.4 52 102-170 7-61 (268) 115 3nav_A Tryptophan synthase alp 24.3 29 0.0012 13.6 5.1 99 268-368 34-156 (271) 116 3l49_A ABC sugar (ribose) tran 24.1 30 0.0012 13.6 3.9 15 98-115 28-42 (291) 117 1y5e_A Molybdenum cofactor bio 24.0 30 0.0012 13.6 4.5 16 12-27 10-25 (169) 118 2aee_A OPRT, oprtase, orotate 24.0 30 0.0013 13.6 2.4 25 284-312 119-143 (211) 119 2hmt_A YUAA protein; RCK, KTN, 23.9 30 0.0013 13.5 4.2 95 49-171 21-117 (144) 120 2iyf_A OLED, oleandomycin glyc 23.3 31 0.0013 13.5 6.2 101 17-120 9-116 (430) 121 2f8m_A Ribose 5-phosphate isom 22.8 26 0.0011 14.0 1.3 27 40-66 57-84 (244) 122 1q1g_A Uridine phosphorylase p 22.7 31 0.0013 13.4 5.2 50 418-467 189-244 (276) 123 3g40_A Na-K-CL cotransporter; 22.6 32 0.0013 13.4 1.9 33 338-370 81-119 (294) 124 3eme_A Rhodanese-like domain p 22.1 32 0.0014 13.3 2.5 18 353-370 9-26 (103) 125 1l1q_A Adenine phosphoribosylt 21.5 18 0.00074 15.2 0.2 15 487-501 159-173 (186) 126 1rrv_A Glycosyltransferase GTF 21.2 33 0.0014 13.2 5.4 47 18-64 2-54 (416) 127 1nh8_A ATP phosphoribosyltrans 21.0 24 0.001 14.3 0.8 14 48-61 35-48 (304) 128 3ngf_A AP endonuclease, family 20.6 34 0.0014 13.1 4.3 10 98-107 54-63 (269) 129 2yv2_A Succinyl-COA synthetase 20.3 35 0.0015 13.0 3.1 16 143-158 88-103 (297) 130 3guy_A Short-chain dehydrogena 20.2 35 0.0015 13.0 5.0 80 16-117 1-81 (230) 131 3h7a_A Short chain dehydrogena 20.1 35 0.0015 13.0 5.2 76 17-117 8-92 (252) 132 1t35_A Hypothetical protein YV 20.1 35 0.0015 13.0 3.9 36 29-64 22-64 (191) 133 3n0w_A ABC branched chain amin 20.1 35 0.0015 13.0 4.0 34 30-63 62-103 (379) No 1 >1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2 functional domains, IMPCH domain = alpha/beta/alpha; HET: G; 1.75A {Gallus gallus} SCOP: c.24.1.3 c.97.1.4 PDB: 1thz_A* 2b1g_A* 2b1i_A* 2iu0_A* 2iu3_A* 1m9n_A* 1oz0_A* 1pkx_A* 1p4r_A* 1pl0_A* Probab=100.00 E-value=0 Score=1607.82 Aligned_cols=509 Identities=35% Similarity=0.573 Sum_probs=470.2 Q ss_pred CCEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCC Q ss_conf 61369899875456869999999987999999427689999889951794653488165198553237155535533088 Q gi|254780664|r 14 IAVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRD 93 (536) Q Consensus 14 ~~ikrALiSV~dKtgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~ 93 (536) .++|+|||||||||||++||+.|+++||||||||||+++|+++||||++|||+||||||||||||||||+||||||+| + T Consensus 3 ~~~k~ALiSVsDKtgl~~la~~L~~~g~eiiSTGGTa~~L~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~IhgGILar-~ 81 (593) T 1g8m_A 3 ARQQLALLSVSEKAGLVEFARSLNALGLGLIASGGTATALRDAGLPVRDVSDLTGFPEMLGGRVKTLHPAVHAGILAR-N 81 (593) T ss_dssp -CCCEEEEEESCCTTHHHHHHHHHHTTCEEEECHHHHHHHHHTTCCCEEHHHHHSCCCBGGGTBSSCSHHHHHHHHCC-S T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHCCCEEEECCHHHHHHHHCCCCEEEHHHCCCCHHHHCCCCCCCCCHHHHHHHCC-C T ss_conf 656569999745469899999999889889977079999998799668877504981650980555883540777059-9 Q ss_pred CHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCC-CHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHC Q ss_conf 9899999997799841499994888899731765-311232002334346999874015631353089998988987530 Q gi|254780664|r 94 NPAHMKFMQDHELESIDLVVVNLYPFEESFCRED-DYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDV 172 (536) Q Consensus 94 ~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~-~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~el~~ 172 (536) +++|++++++|||++|||||||||||++|+++++ +++++|||||||||||||||||||++|+|||||+||+.++++|+. T Consensus 82 ~~~~~~~l~~~~I~~IDlVvVNLYPF~~tv~~~~~~~~~~IEnIDIGGptmiRAAAKN~~~V~Vi~dp~dY~~vi~~l~~ 161 (593) T 1g8m_A 82 IPEDNADMNKQDFSLVRVVVCNLYPFVKTVSSPGVTVPEAVEKIDIGGVALLRAAAKNHARVTVVCDPADYSSVAKEMAA 161 (593) T ss_dssp SHHHHHHHHHTTCCCEEEEEEECCCHHHHHTSTTCCHHHHHTTCCSHHHHHHHHHHHTTTTCEEECCGGGHHHHHHHHHT T ss_pred CHHHHHHHHHCCCCCCCEEEEECCCHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHH T ss_conf 87889999985999825799818885999736899989997751567888889987368875698133278999999987 Q ss_pred C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCH Q ss_conf 2-345666788999999999874228999987533101211344321012333343678810065057604776682101 Q gi|254780664|r 173 N-NGKIPYNFRKKMARQAFSRTASYDTAICRWLANAESENFPDYLNITAVKKQEMRYGENPHQKAALYSTPEKKSGIAHA 251 (536) Q Consensus 173 ~-~g~~~~~~R~~lA~kAF~~ta~YD~~Ia~~l~~~~~~~~p~~~~~~~~~~~~LRYGENPHQ~Aa~Y~~~~~~~~~~~~ 251 (536) + +|++++++|++||.|||+|||+||++|++||.+.... ..+.++|||||||||+|++|.......+ + T Consensus 162 ~~~g~~s~~~R~~lA~kAF~~Ta~YD~~Ia~~~~~~~~~---------~~~~~~LRYGENPHQ~Aa~y~~~~~~~~---~ 229 (593) T 1g8m_A 162 SKDKDTSVETRRHLALKAFTHTAQYDAAISDYFRKEYSK---------GVSQLPLRYGMNPHQSPAQLYTTRPKLP---L 229 (593) T ss_dssp STTSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCB---------TTTEEEESCSSSTTSCCEEEECSSSSCS---E T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------CCCCCCCCCCCCHHHHHHHHCCCCCCHH---H T ss_conf 268998899999999999999877389998510131036---------6655666378884455365215686427---8 Q ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHCCC-CCCCEEEEECCCCCCCCCCCC--------------------HHHHHHHHHH Q ss_conf 2105898883122212001167764245-567279996156865654520--------------------1689999998 Q gi|254780664|r 252 VLVQGKPLSYNNINDLDAAFELVSEFRS-QDCAACVIVKHMNPCGVATAD--------------------TLVEAYRRAL 310 (536) Q Consensus 252 ~ql~GKeLSYNNllD~daA~~lv~ef~~-~~~Pa~vIvKH~NPCGvA~~~--------------------~~~~Ay~~A~ 310 (536) ++++||+ |||||+|+|+||+||+||.+ ...||||||||+||||||+|. ++..||++|+ T Consensus 230 ~~~~g~~-SYNN~lD~daA~~lv~ef~~~~~~Pa~vIvKH~NPCGvAig~~l~E~~~~~~~~~~~~~~~~~l~~Ay~~A~ 308 (593) T 1g8m_A 230 TVVNGSP-GFINLCDALNAWQLVKELKQALGIPAAASFKHVSPAGAAVGIPLSEEEAQVCMVHDLHKTLTPLASAYARSR 308 (593) T ss_dssp EEEESCC-CHHHHHHHHHHHHHHHHHHHHHCSCEEEEEETTEEEEEEECCCCCHHHHHHTTCTTTGGGCCHHHHHHHHHH T ss_pred HHHHCCC-CCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHH T ss_conf 8863256-632356679999999976760599716773578872032064310333201101121124561999999987 Q ss_pred HHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCEECCCCHHHHH Q ss_conf 53321320045554275421457878865431111268798999885124553156316766777666402032102231 Q gi|254780664|r 311 SCDPISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDFHGEEIVLKTVSGGILV 390 (536) Q Consensus 311 ~~DP~SAFGGIIa~N~~vd~~~A~~I~~~F~EvIiAP~f~~eAleiL~~KKnlRil~~~~~~~~~~~~~~~rsi~GG~Lv 390 (536) +|||+||||||||||++||.++|+.|.+.|+||||||+|++|||+||++|||+|++++.....+.+..+++|++.||+|+ T Consensus 309 ~~DP~SAFGGIIA~N~~vd~~~A~~i~~~F~EvIIAP~f~~eALeiL~~KKNlR~l~~~~~~~~~~~~~~irsv~GG~Lv 388 (593) T 1g8m_A 309 GADRMSSFGDFIALSDICDVPTAKIISREVSDGVVAPGYEEEALKILSKKKNGGYCVLQMDPNYEPDDNEIRTLYGLQLM 388 (593) T ss_dssp HSCTTTTTTEEEEESSCBCHHHHHHHHTSCEEEEEESCBCHHHHHHHHHGGGGTCEEEEECTTCCCCSEEEEEETTEEEE T ss_pred CCCCCHHCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCEEEEEEEEEE T ss_conf 05960001778998231037888875210110002678898999987514553213330475567776736898651567 Q ss_pred CCCCCC-CCCCCCC--CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 012334-5310001--2467778688988899999986005667799996893899729688889999999999876420 Q gi|254780664|r 391 QTRDNV-VDNKELT--VVTKRSPTDQELRDMKFAFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISA 467 (536) Q Consensus 391 Q~~D~~-~~~~~~~--vVT~~~pt~~e~~dL~FA~kv~K~vkSNAIv~ak~~~tiGiGaGQ~sRVda~~iA~~KA~~~~~ 467 (536) |++|.. ++..+|+ ++|+++|+++|++||+|||+|||||||||||++||++|||||+||||||||++||++||++++. T Consensus 389 Q~~d~~~~~~~~~~~vv~~~~~p~~~e~~DL~FAw~vvK~vKSNAIv~ak~~~tvGIGaGQ~sRVdsv~iA~~KA~~~~~ 468 (593) T 1g8m_A 389 QKRNNAVIDRSLFKNIVTKNKTLPESAVRDLIVASIAVKYTQSNSVCYAKDGQVIGIGAGQQSRIHCTRLAGDKANSWWL 468 (593) T ss_dssp EECCCCCCSGGGGCCBCSSSCCCCHHHHHHHHHHHHHHHTSCSSCEEEEETTEEEEEECSCSCHHHHHHHHHHHHHHHHH T ss_pred EECCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHH T ss_conf 51455447978864222146898477899999999972547775799986997897678876657899999999755665 Q ss_pred CCCC--------------------------------------------------------CCCCCCEEEEECCCCCCCCH Q ss_conf 0122--------------------------------------------------------22348709997366868555 Q gi|254780664|r 468 QADV--------------------------------------------------------KSMTNGSVIASEAFYPFPDG 491 (536) Q Consensus 468 ~~~~--------------------------------------------------------~~~~~g~vlaSDAFFPF~D~ 491 (536) +.++ ..+++|+||||||||||+|| T Consensus 469 ~~~~~~l~~~~~~~~~r~~~~nai~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~g~vlASDAFFPF~D~ 548 (593) T 1g8m_A 469 RHHPRVLSMKFKAGVKRAEVSNAIDQYVTGTIGEDEDLVKWQAMFEEVPAQLTEAEKKQWIAKLTAVSLSSDAFFPFRDN 548 (593) T ss_dssp TTCHHHHTCEECTTCCHHHHHHHHHHHHHTCSCSTHHHHHHHTTEEECCCCCCHHHHHHHHTTCCCEEEEESSCCSSTHH T ss_pred HCCCHHHCCCHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCHH T ss_conf 30602320110012003444334565411443310244555543013543100788876650358838982158787658 Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCC Q ss_conf 899997199599938987798899999987597799747854479 Q gi|254780664|r 492 IVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFTGIRHFRH 536 (536) Q Consensus 492 ie~aa~~Gi~aIiqPGGSirD~evI~aan~~gi~m~fTg~RhF~H 536 (536) ||.|+++||++||||||||||+|||++|||+||+|+|||.||||| T Consensus 549 ie~a~~~GV~aIiQPGGSirD~evI~aan~~giaMvfTg~RhF~H 593 (593) T 1g8m_A 549 VDRAKRIGVQFIVAPSGSAADEVVIEACNELGITLIHTNLRLFHH 593 (593) T ss_dssp HHHHHTTTEEEEEEECCCTTHHHHHHHHHHHTCEEEEESCCCCCC T ss_pred HHHHHHCCCEEEECCCCCCCCHHHHHHHHHHCCEEEECCCCCCCC T ss_conf 999998399199879864360999999997398899868766388 No 2 >1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4 Probab=100.00 E-value=0 Score=1488.74 Aligned_cols=458 Identities=38% Similarity=0.590 Sum_probs=425.9 Q ss_pred CCCCCCEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHH Q ss_conf 86776136989987545686999999998799999942768999988995179465348816519855323715553553 Q gi|254780664|r 10 DHGEIAVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGIL 89 (536) Q Consensus 10 ~~~~~~ikrALiSV~dKtgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL 89 (536) ..++.|||||||||||||||++||+.|+++||||+|||||+++|+++||||++|||+||||||||||||||||+|||||| T Consensus 7 ~~~~~~ikrALiSVsdK~gl~~~a~~L~~~g~eiisTGGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~IhggiL 86 (464) T 1zcz_A 7 HHHHHHMKRILVSLYEKEKYLDILRELHEKGWEIWASSGTAKFLKSNGIEANDVSTITGFENLLGGLVKTLHPEIFAGIL 86 (464) T ss_dssp ------CCEEEEECSSTGGGHHHHHHHHHTTCEEEECHHHHHHHHHTTCCCEEGGGGSCCCCGGGGTTTTCCHHHHHHHH T ss_pred CCCHHHCCEEEEEEECCCCHHHHHHHHHHCCCEEEECCHHHHHHHHCCCCEEEHHHCCCCCHHHCCCCCCCCCHHHHHHC T ss_conf 21222326799999757598999999998898999872689999977996688886149717748832547805537651 Q ss_pred HCCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHH Q ss_conf 30889899999997799841499994888899731765311232002334346999874015631353089998988987 Q gi|254780664|r 90 SIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAE 169 (536) Q Consensus 90 ~~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~e 169 (536) +||+ .||||||||||| ||||||||||||||||||++|+|+|||+||+.++++ T Consensus 87 ~~~~--------------~iDlVvvNLYPf--------------EnIDIGGpsmiRAAAKN~~~Vtvi~dp~~y~~~~~~ 138 (464) T 1zcz_A 87 GPEP--------------RWDVVFVDLYPP--------------PDIDIGGVALLRAAAKNWKKVKPAFDMETLKLAIEI 138 (464) T ss_dssp SSSC--------------SCSEEEECCCCT--------------TCCCSHHHHHHHHHHHTTTTCEEECSHHHHHHHHHC T ss_pred CCCC--------------CCCEEEECCCCC--------------CCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHH T ss_conf 7888--------------878799817884--------------247977289999998737574346769999998852 Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC Q ss_conf 53023456667889999999998742289999875331012113443210123333436788100650576047766821 Q gi|254780664|r 170 MDVNNGKIPYNFRKKMARQAFSRTASYDTAICRWLANAESENFPDYLNITAVKKQEMRYGENPHQKAALYSTPEKKSGIA 249 (536) Q Consensus 170 l~~~~g~~~~~~R~~lA~kAF~~ta~YD~~Ia~~l~~~~~~~~p~~~~~~~~~~~~LRYGENPHQ~Aa~Y~~~~~~~~~~ 249 (536) ++++||++||.|||.|||+||++|++||.+.....+ ..+.++|||||||||+|++|..+. T Consensus 139 -------~~~~~R~~LA~kAF~~TA~YD~~Is~~f~~~~~~~~-------~~~~~~LRYGENPHQ~Aa~Y~~~~------ 198 (464) T 1zcz_A 139 -------DDEETRKYLAGMTFAFTSVYDSIRANQFVEGISLAF-------KREDLQLRYGENPHEKAFVYGKPA------ 198 (464) T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-------EEECCCCSCSSSTTSCEEEESCCS------ T ss_pred -------CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH-------HHCCCCCCCCCCHHHCCEEECCCC------ T ss_conf -------169999999999877654424525302011121134-------422467768999333180755431------ Q ss_pred CHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCC Q ss_conf 01210589888312221200116776424556727999615686565452016899999985332132004555427542 Q gi|254780664|r 250 HAVLVQGKPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVD 329 (536) Q Consensus 250 ~~~ql~GKeLSYNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd 329 (536) ...++|||+||||||+|+|+||+||+||.+ |+||||||+||||||+++++.+||++|++|||+||||||||||++|| T Consensus 199 ~~~~~qGKeLSYNNllDadaA~~lv~ef~~---pa~aIiKH~NPCGvA~~~~~~~Ay~~A~~~Dp~SAFGGIVA~N~~vd 275 (464) T 1zcz_A 199 FEILHEGKTISFNNILDAENAWFMAKNLPR---MGAVVVKHQSPCGAAIGEDKVEIVKKAIEADDESSFGGILAVNFEMD 275 (464) T ss_dssp EEEECSSSCCCHHHHHHHHHHHHHHHTCSS---SEEEEEETTEEEEEEECSCHHHHHHHHHHHTTTTTTTEEEEESSCBC T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHCCCC---CCEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCHH T ss_conf 877526888771536628999864331367---72488625776545323440167840500699554460899777126 Q ss_pred HHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCEECCCCHHHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 14578788654311112687989998851245531563167667776664020321022310123345310001246777 Q gi|254780664|r 330 QEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDFHGEEIVLKTVSGGILVQTRDNVVDNKELTVVTKRS 409 (536) Q Consensus 330 ~~~A~~I~~~F~EvIiAP~f~~eAleiL~~KKnlRil~~~~~~~~~~~~~~~rsi~GG~LvQ~~D~~~~~~~~~vVT~~~ 409 (536) .++|++|++ |+||||||+|++|||++|++||++|+... . ...++.+++.||+|+|++|. +..+|++||+++ T Consensus 276 ~~~A~~I~~-F~EvIIAP~f~~eALeiL~kKk~~~l~~~-~-----~~~~~~~~~~gg~l~q~~d~--~~~~~~~vt~~~ 346 (464) T 1zcz_A 276 EEVAKSLKK-YLEVIVAPSFTQEAIEVLSKKKVRLLKPG-D-----YASWAGKMAFGSLVLSERKY--PEGNFELVVGEP 346 (464) T ss_dssp HHHHHHCCS-CEEEEECSCBCHHHHHHHTTSSCEEEEEC-C-----CCCEEEEEETTEEEEEECCC--CCSCCEEEESCC T ss_pred HHHHHHHHH-CEEEEECCCCCHHHHHHHHHCCCHHHCCC-C-----CCCHHHEECCCEEEECCCCC--CCCCCCEEECCC T ss_conf 899999764-34999828989899999860172010235-5-----43310021145133002234--544331010578 Q ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCC Q ss_conf 86889888999999860056677999968938997296888899999999998764200122223487099973668685 Q gi|254780664|r 410 PTDQELRDMKFAFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQADVKSMTNGSVIASEAFYPFP 489 (536) Q Consensus 410 pt~~e~~dL~FA~kv~K~vkSNAIv~ak~~~tiGiGaGQ~sRVda~~iA~~KA~~~~~~~~~~~~~~g~vlaSDAFFPF~ 489 (536) |+++|++||+|||+|||||||||||++||++|||||+||||||||++||++||++ +++|+||||||||||+ T Consensus 347 pt~~e~~dL~FAwkv~K~vkSNAIv~akn~~tiGIGaGQ~sRvds~~iA~~kA~~---------~~~g~v~aSDAFFPF~ 417 (464) T 1zcz_A 347 LSEKELEDLEFAYRVVEGAKSNAVLIAKDGVTVGIGSGQPSRKRAAWIATVMAGE---------KAKGAVAASDAFFPFP 417 (464) T ss_dssp CCHHHHHHHHHHHHHHHHSCSSCEEEEETTEEEEEECSCSSHHHHHHHHHHHHGG---------GGTTCEEEESSCCSSH T ss_pred CCHHHHCCCCHHHHHHCCCCCCCEEEEECCEEEEECCCCCCHHHHHHHHHHHHCC---------CCCCEEEEECCCCCCC T ss_conf 8833314500588664535426489960986997588865779999999998353---------0278699956688875 Q ss_pred CHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCC Q ss_conf 55899997199599938987798899999987597799747854479 Q gi|254780664|r 490 DGIVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFTGIRHFRH 536 (536) Q Consensus 490 D~ie~aa~~Gi~aIiqPGGSirD~evI~aan~~gi~m~fTg~RhF~H 536 (536) ||||.|+++||++|||||||+||+|||++|||+||+|+|||.||||| T Consensus 418 D~i~~aa~~Gv~~IiqPGGSirD~evI~aane~gi~m~fTg~RhF~H 464 (464) T 1zcz_A 418 DSLEILAQAGVKAVVAPLGSIRDEEVIEKARELGITFYKAPSRVFRH 464 (464) T ss_dssp HHHHHHHHTTCCEEEECCCCTTHHHHHHHHHHHTCEEEECSSCCCCC T ss_pred HHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHCCEEEECCCCCCCC T ss_conf 48999998399499879874251999999997497899868766178 No 3 >2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens} Probab=99.07 E-value=7.5e-10 Score=90.58 Aligned_cols=123 Identities=27% Similarity=0.336 Sum_probs=84.2 Q ss_pred CCCCCEEEEEEEE--ECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHH Q ss_conf 6776136989987--54568699999999879999994276899998899517946534881651985532371555355 Q gi|254780664|r 11 HGEIAVKTALISV--HNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGI 88 (536) Q Consensus 11 ~~~~~ikrALiSV--~dKtgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggI 88 (536) .-++|-|..|||| +||..+.++|+.|.++||+|++|+||+++|+++||+|+.|..... +|| ++-.| T Consensus 19 g~~lP~kgvliSv~d~dK~~~~~~a~~L~~lGf~i~AT~GTa~~L~~~gi~~~~V~~~~~-----~~~-~~~~~------ 86 (143) T 2yvq_A 19 GFKIPQKGILIGIQQSFRPRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQ-----EGQ-NPSLS------ 86 (143) T ss_dssp SCCCCCSEEEEECCGGGHHHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGG-----C------CB------ T ss_pred CCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCEEEEEEECC-----CCC-CCCCC------ T ss_conf 998899888999867637789999999997496789735899999975985189985213-----676-66743------ Q ss_pred HHCCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHH Q ss_conf 33088989999999779984149999488889973176531123200233434699987401563135308999898898 Q gi|254780664|r 89 LSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLA 168 (536) Q Consensus 89 L~~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~ 168 (536) |..++-+. ..|||| +|...- +. ..+. | | -+||-+|-.| +|.++|+++--..+++ T Consensus 87 --------~i~~~i~~--g~i~lV-INtp~~------~~---~~~~--d--g-~~IRR~Av~~-~Ip~~T~i~~A~~~v~ 140 (143) T 2yvq_A 87 --------SIRKLIRD--GSIDLV-INLPNN------NT---KFVH--D--N-YVIRRTAVDS-GIPLLTNFQVTKLFAE 140 (143) T ss_dssp --------CHHHHHHT--TSCCEE-EECCCC------CG---GGHH--H--H-HHHHHHHHHT-TCCEECSHHHHHHHHH T ss_pred --------CHHHHHHC--CCEEEE-EECCCC------CC---CCCC--C--H-HHHHHHHHHC-CCCEEECHHHHHHHHH T ss_conf --------39999875--975999-986789------97---6566--5--7-9999999975-9998868999999999 Q ss_pred HHH Q ss_conf 753 Q gi|254780664|r 169 EMD 171 (536) Q Consensus 169 el~ 171 (536) .|+ T Consensus 141 ale 143 (143) T 2yvq_A 141 AVQ 143 (143) T ss_dssp TCC T ss_pred HHC T ss_conf 859 No 4 >1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Probab=98.72 E-value=2.1e-07 Score=72.78 Aligned_cols=183 Identities=23% Similarity=0.241 Sum_probs=81.3 Q ss_pred CCEEEEEE--ECCCHHHHHCCCC----CHHHHHHCCCCCC------HHHHHHHHCCCCCC---EEEECHHHHHHHHHHHH Q ss_conf 84149999--4888899731765----3112320023343------46999874015631---35308999898898753 Q gi|254780664|r 107 ESIDLVVV--NLYPFEESFCRED----DYYTMVENIDIGG------PSMIRAAAKNHDYV---TILTNPQDYPLFLAEMD 171 (536) Q Consensus 107 ~~IDlVvv--NLYPF~~~v~~~~----~~~~~IEnIDIGG------psmiRAAAKN~~~V---~Vi~dp~dY~~~~~el~ 171 (536) +.+|-|+| --.||++...... .....=|-|=||- --++||.--+.... ....+..+...++++|. T Consensus 350 P~~dyv~vk~P~~~f~kf~~~~~~Lg~~mkS~Gevm~iGrtfeeA~~Ka~rsl~~~~~~~~~~~~~~~~~~~~~l~~~L~ 429 (1073) T 1a9x_A 350 PSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELK 429 (1073) T ss_dssp CBCSSEEEEEEECCGGGCTTSCCBCCSSCCCCEEEEEEESSHHHHHHHHHHHSSSSCSSSCCSSCTTCTTHHHHHHHHHH T ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHC T ss_conf 85884852578775656788776646510121014665488999999999865047567776555564000999999854 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHCC--------------CCHH-------------H----- Q ss_conf 0234566678899999999987422899-----9987533101--------------2113-------------4----- Q gi|254780664|r 172 VNNGKIPYNFRKKMARQAFSRTASYDTA-----ICRWLANAES--------------ENFP-------------D----- 214 (536) Q Consensus 172 ~~~g~~~~~~R~~lA~kAF~~ta~YD~~-----Ia~~l~~~~~--------------~~~p-------------~----- 214 (536) .- ...|-..-..||..-..+|.. |..||-.+.. ..++ + T Consensus 430 ~p-----~~~ri~~i~eAlr~G~s~~ei~~~T~Id~wFl~~i~~iv~~e~~~~~~~~~~~~~~~l~~aK~~GFsD~~ia~ 504 (1073) T 1a9x_A 430 DA-----GADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNADFLRQLKRKGFADARLAK 504 (1073) T ss_dssp TC-----BTTHHHHHHHHHHTTBCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHTGGGCCHHHHHHHHHTTCCHHHHHH T ss_pred CC-----CCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHH T ss_conf 89-----9358999999998699788888887869999999999999998652058666999999999881999899998 Q ss_pred ----------------HHHHCCCCCCCCCCCCCCCCCCEEEECCCCCC---CC---CCHHHCCCCCCCCCCCCCC----C Q ss_conf ----------------43210123333436788100650576047766---82---1012105898883122212----0 Q gi|254780664|r 215 ----------------YLNITAVKKQEMRYGENPHQKAALYSTPEKKS---GI---AHAVLVQGKPLSYNNINDL----D 268 (536) Q Consensus 215 ----------------~~~~~~~~~~~LRYGENPHQ~Aa~Y~~~~~~~---~~---~~~~ql~GKeLSYNNllD~----d 268 (536) .+...+ +.-+--=||=|-....+|+.-+... +. ...-+|.+.+ |-+-.. . T Consensus 505 l~~~~~~~vr~~R~~~~i~p~y-k~VDtcAgEf~a~t~y~Ysty~~e~e~~~~~~~~kvivlGsGp---~RIGqgiEFDy 580 (1073) T 1a9x_A 505 LAGVREAEIRKLRDQYDLHPVY-KRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLGGGP---NRIGQGIEFDY 580 (1073) T ss_dssp HTTSCHHHHHHHHHHTTCCCEE-EECCSBTTSSCCCCEEEEEESCSCCCCCCCSSSCEEEEECCCS---CBTTBCHHHHH T ss_pred HHCCCHHHHHHHHHHCCCCCEE-EECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCC---CCCCCCCCCCH T ss_conf 7099899999999974997158-8514434433677647999668887667555788889988864---40466645355 Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCCCCCCCC Q ss_conf 01167764245567279996156865654520 Q gi|254780664|r 269 AAFELVSEFRSQDCAACVIVKHMNPCGVATAD 300 (536) Q Consensus 269 aA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~ 300 (536) .+..++..|.+.+.. +|+=-+||--|++.- T Consensus 581 ~~v~a~~~l~~~g~~--~imiN~NPeTVStd~ 610 (1073) T 1a9x_A 581 CCVHASLALREDGYE--TIMVNCNPETVSTDY 610 (1073) T ss_dssp HHHHHHHHHHHTTCE--EEEECCCTTSSTTST T ss_pred HHHHHHHHHHHCCCE--EEEECCCCCCCCCCC T ss_conf 999999999977975--899427832111582 No 5 >1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 2.06A {Thermotoga maritima} SCOP: c.24.1.2 Probab=98.06 E-value=5.6e-05 Score=55.16 Aligned_cols=119 Identities=23% Similarity=0.320 Sum_probs=81.7 Q ss_pred EEEEEEE-EECCCCHHHHHHHHHHC--CCEEEEEHHHHHHHHHC-CCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHC Q ss_conf 3698998-75456869999999987--99999942768999988-99517946534881651985532371555355330 Q gi|254780664|r 16 VKTALIS-VHNKTGVVEFASRLLSR--GIKIISTGGTCQLLEEE-GIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSI 91 (536) Q Consensus 16 ikrALiS-V~dKtgl~~la~~L~~~--g~~iisTgGTa~~l~~~-gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~ 91 (536) .+-|||. =.||..+++||+.+.++ ||+|++|+||+++|+++ |++|+.+-. ...|| T Consensus 28 ~~iAlIAhD~dK~~lv~~ak~~~~lL~Gf~LvAT~GTa~~L~e~ggl~v~~v~~-----------------~~~gg---- 86 (178) T 1vmd_A 28 KRIALIAHDRRKRDLLEWVSFNLGTLSKHELYATGTTGALLQEKLGLKVHRLKS-----------------GPLGG---- 86 (178) T ss_dssp CEEEEEECGGGHHHHHHHHHHSHHHHTTSEEEECHHHHHHHHHHHCCCCEECSC-----------------GGGTH---- T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCEEEEEEE-----------------CCCCC---- T ss_conf 337898532774999999999999964974997053899998735974898640-----------------37888---- Q ss_pred CCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHHH Q ss_conf 88989999999779984149999488889973176531123200233434699987401563135308999898898753 Q gi|254780664|r 92 RDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMD 171 (536) Q Consensus 92 r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~el~ 171 (536) ..++.++-.. ..||+||.=.-|... +. .. -| |-.|.|+|-. .+|.++|+.+-=..++..+. T Consensus 87 ---~p~I~d~I~~--geI~lVINt~d~~~~---~~-~~------~D--~~~IRR~av~--~~IP~~Ttl~tA~a~i~ai~ 147 (178) T 1vmd_A 87 ---DQQIGAMIAE--GKIDVLIFFWDPLEP---QA-HD------VD--VKALIRIATV--YNIPVAITRSTADFLISSPL 147 (178) T ss_dssp ---HHHHHHHHHT--TSCCEEEEECCSSSC---CT-TS------CC--HHHHHHHHHH--TTCCEESSHHHHHHHHHSGG T ss_pred ---CCCHHHHHHC--CCCCEEEECCCCCCC---CC-CH------HH--HHHHHHHHHH--HCCCEEECHHHHHHHHHHHH T ss_conf ---8529999986--982189981699777---76-60------26--9999999998--49723546999999999897 Q ss_pred CCC Q ss_conf 023 Q gi|254780664|r 172 VNN 174 (536) Q Consensus 172 ~~~ 174 (536) .+. T Consensus 148 ~~~ 150 (178) T 1vmd_A 148 MND 150 (178) T ss_dssp GGS T ss_pred HCC T ss_conf 467 No 6 >1wo8_A Methylglyoxal synthase; structural genomics, riken structural genomics/proteomics initiative, RSGI, lyase; 1.70A {Thermus thermophilus HB8} SCOP: c.24.1.2 Probab=98.06 E-value=1e-05 Score=60.48 Aligned_cols=117 Identities=21% Similarity=0.221 Sum_probs=80.4 Q ss_pred EE-EEEEE-EECCCCHHHHHHHHHHC--CCEEEEEHHHHHHHHHC-CCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHH Q ss_conf 36-98998-75456869999999987--99999942768999988-9951794653488165198553237155535533 Q gi|254780664|r 16 VK-TALIS-VHNKTGVVEFASRLLSR--GIKIISTGGTCQLLEEE-GIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILS 90 (536) Q Consensus 16 ik-rALiS-V~dKtgl~~la~~L~~~--g~~iisTgGTa~~l~~~-gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~ 90 (536) || -|||. =+||..+++|++.+.+. ||+|++|+||+++|+++ |++|+.|.... | || T Consensus 1 ~k~ialiAhD~dK~~l~~~a~~~~~ll~gf~i~AT~GTa~~L~~~~gi~v~~v~k~~---~--------------gg--- 60 (126) T 1wo8_A 1 MKALALIAHDAKKDEMVAFCLRHKDVLARYPLLATGTTGARIQEATGLAVERVLSGP---L--------------GG--- 60 (126) T ss_dssp CCEEEEEECGGGHHHHHHHHHHTHHHHTTSCEEECHHHHHHHHHHHCCCCEECCCTT---T--------------TH--- T ss_pred CCEEEEEEHHCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCEEEEEEECC---C--------------CC--- T ss_conf 954899830067699999999999997497599603299999983496489997458---8--------------99--- Q ss_pred CCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHH Q ss_conf 08898999999977998414999948888997317653112320023343469998740156313530899989889875 Q gi|254780664|r 91 IRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEM 170 (536) Q Consensus 91 ~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~el 170 (536) ..++.++-.. ..|||||.=-=|.. +.+. +--|-.|.|+|..+ +|.++|+++-=..+++.| T Consensus 61 ----~p~i~d~I~~--g~I~lVIn~~~~~~-----~~~~-------~~D~~~IRR~a~~~--~IP~~T~~~~A~a~v~al 120 (126) T 1wo8_A 61 ----DLQIGARVAE--GKVLAVVFLQDPLT-----AKPH-------EPDVQALMRVCNVH--GVPLATNLVAAEALIAWI 120 (126) T ss_dssp ----HHHHHHHHHT--TCEEEEEEECCTTS-----CCTT-------HHHHHHHHHHHHHT--TCCEECSHHHHHHHHHHH T ss_pred ----CCCHHHHHHC--CCCCEEEEECCCCC-----CCCC-------CHHHHHHHHHHHHC--CCCEEECHHHHHHHHHHH T ss_conf ----9899999985--99778998069888-----8645-------00089999999973--998897899999999999 Q ss_pred HC Q ss_conf 30 Q gi|254780664|r 171 DV 172 (536) Q Consensus 171 ~~ 172 (536) ++ T Consensus 121 ~~ 122 (126) T 1wo8_A 121 RK 122 (126) T ss_dssp HH T ss_pred HH T ss_conf 82 No 7 >1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A Probab=97.72 E-value=0.00028 Score=50.10 Aligned_cols=116 Identities=18% Similarity=0.212 Sum_probs=74.6 Q ss_pred EEEEE-EECCCCHHHHHHHHHHC--CCEEEEEHHHHHHHHHCCCC-EEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCC Q ss_conf 98998-75456869999999987--99999942768999988995-1794653488165198553237155535533088 Q gi|254780664|r 18 TALIS-VHNKTGVVEFASRLLSR--GIKIISTGGTCQLLEEEGIP-VTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRD 93 (536) Q Consensus 18 rALiS-V~dKtgl~~la~~L~~~--g~~iisTgGTa~~l~~~gi~-v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~ 93 (536) -|||. =.||..+++||+.+.++ ||+|++|+||+++|+++|+. ++.+- +.-.|| T Consensus 14 I~LiahD~~K~~lv~~a~~~~~ll~Gf~L~AT~GTa~~L~~~g~~~~~~~~-----------------~~~~gg------ 70 (152) T 1b93_A 14 IALVAHDHCKQMLMSWVERHQPLLEQHVLYATGTTGNLISRATGMNVNAML-----------------SGPMGG------ 70 (152) T ss_dssp EEEEECGGGHHHHHHHHHHTHHHHTTSEEEEETTHHHHHHHHHCCCCEEEC-----------------CGGGTH------ T ss_pred EEEEEECCCHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCEEEEEE-----------------ECCCCC------ T ss_conf 999974177499999999999997497299742599999970796488876-----------------458787------ Q ss_pred CHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHCC Q ss_conf 98999999977998414999948888997317653112320023343469998740156313530899989889875302 Q gi|254780664|r 94 NPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVN 173 (536) Q Consensus 94 ~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~el~~~ 173 (536) ..++.++=.. ..|||||-=.=|-. ...... | |-.|.|+|.. .+|.++|+++-=..+++.+... T Consensus 71 -~p~i~d~I~~--g~IdlVIn~~~p~~----~~~~~~------D--~~~IRR~av~--~~IP~~T~~~tA~a~i~ai~~~ 133 (152) T 1b93_A 71 -DQQVGALISE--GKIDVLIFFWDPLN----AVPHDP------D--VKALLRLATV--WNIPVATNVATADFIIQSPHFN 133 (152) T ss_dssp -HHHHHHHHHT--TCCCEEEEECCTTS----CCTTHH------H--HHHHHHHHHH--TTCCEESSHHHHHHHHTSGGGG T ss_pred -HHHHHHHHHC--CCCCEEEEECCCCC----CCCCCC------H--HHHHHHHHHH--CCCCEEECHHHHHHHHHHHHHC T ss_conf -1239999985--99648998168988----754532------0--8999999998--1973675699999999979856 No 8 >2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1 Probab=94.68 E-value=0.078 Score=32.31 Aligned_cols=134 Identities=14% Similarity=0.164 Sum_probs=76.7 Q ss_pred EEEEEEECC---CCHHHHHHHHHHCCC-EEEEEHHHHHHHHHC-CCCEEEHHHHCCCCHHCC--CCCCCCCCHHHHHHHH Q ss_conf 989987545---686999999998799-999942768999988-995179465348816519--8553237155535533 Q gi|254780664|r 18 TALISVHNK---TGVVEFASRLLSRGI-KIISTGGTCQLLEEE-GIPVTSVFDITKFPEIMG--GRVKTLHPKIYGGILS 90 (536) Q Consensus 18 rALiSV~dK---tgl~~la~~L~~~g~-~iisTgGTa~~l~~~-gi~v~~Vs~~TgfpEil~--GRVKTLHP~I~ggIL~ 90 (536) +|=|.|++. +++.+..+.+...++ =|||.|||+.+|+++ .+||.+|. +|+|. ||. -+.|..+++| |+.. T Consensus 38 ~a~i~v~~~~~edav~~~~~~~~~~~~DviISRG~ta~~Ir~~~~iPVVeI~-vs~~D-il~aL~~a~~~~~kI--avVg 113 (225) T 2pju_A 38 LANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRLSVPVILIK-PSGYD-VLQFLAKAGKLTSSI--GVVT 113 (225) T ss_dssp TCEEEEECCCHHHHHHHHHHHTTTSCCSEEEEEHHHHHHHHTTCSSCEEEEC-CCHHH-HHHHHHHTTCTTSCE--EEEE T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCEEEEE-CCHHH-HHHHHHHHHHHCCCE--EEEE T ss_conf 7569998274789999999998649986999685689999985899889970-78768-999999999758988--9993 Q ss_pred CCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCC-CHHHHHHCCCCCCHHHHHHHHCCCCCCEEEE Q ss_conf 0889899999997799841499994888899731765-3112320023343469998740156313530 Q gi|254780664|r 91 IRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCRED-DYYTMVENIDIGGPSMIRAAAKNHDYVTILT 158 (536) Q Consensus 91 ~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~-~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~ 158 (536) -.+.....+.+.++ -.+++...-+.--++.-..=. -.++-++-| |||....+.|.+.--.-..+. T Consensus 114 f~~~~~~~~~~~~l--l~~~i~~~~~~~~~e~~~~v~~l~~~G~~vV-VG~~~~~~~A~~~Gl~~vli~ 179 (225) T 2pju_A 114 YQETIPALVAFQKT--FNLRLDQRSYITEEDARGQINELKANGTEAV-VGAGLITDLAEEAGMTGIFIY 179 (225) T ss_dssp ESSCCHHHHHHHHH--HTCCEEEEEESSHHHHHHHHHHHHHTTCCEE-EESHHHHHHHHHTTSEEEESS T ss_pred CCCCCHHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHHCCCCEE-ECCHHHHHHHHHCCCCEEEEC T ss_conf 76403699999999--6994499996688999999999998699799-988589999998499789975 No 9 >2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A* Probab=94.61 E-value=0.29 Score=28.18 Aligned_cols=104 Identities=19% Similarity=0.182 Sum_probs=72.4 Q ss_pred HHHHHHHHHCCCC----CEEEEEECCEEEEECC-----CCCC---------------HHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 9999998600566----7799996893899729-----6888---------------89999999999876420012222 Q gi|254780664|r 418 MKFAFKVVKHVKS----NAVVYAKDGRTVGIGS-----GQTS---------------RVDSTRFAAIKAHNISAQADVKS 473 (536) Q Consensus 418 L~FA~kv~K~vkS----NAIv~ak~~~tiGiGa-----GQ~s---------------RVda~~iA~~KA~~~~~~~~~~~ 473 (536) |..|..+.+..+- -.=||++++..|+.|- |..+ -+.|-..|+.+|...+. T Consensus 46 M~lA~~~A~rS~~p~~~VGAVIV~~~~IIs~GyN~~~~g~~~~~~~~~~~~~~~~~~~iHAE~nAi~~a~~~~~------ 119 (184) T 2hvw_A 46 MANAELISKRSTCNRAYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKEGI------ 119 (184) T ss_dssp HHHHHHHGGGCCCTTCCCEEEEEETTEEEEEEECEESTTSCCHHHHCCCEETTEECSEECHHHHHHHHHHHHTC------ T ss_pred HHHHHHHHHHCCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHC------ T ss_conf 99999999746999998889999899699986378888788733215510012245534789988999976330------ Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEE Q ss_conf 3487099973668685558999971995999389877988999999875977997 Q gi|254780664|r 474 MTNGSVIASEAFYPFPDGIVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVF 528 (536) Q Consensus 474 ~~~g~vlaSDAFFPF~D~ie~aa~~Gi~aIiqPGGSirD~evI~aan~~gi~m~f 528 (536) .++|+.|..- .+|-+.+...+..+||+-||-.-.--.|+..++...++||..+- T Consensus 120 ~~~gatLYvT-~ePC~~Ca~~Ii~aGIkrVVy~~~y~~~~~~~~~l~~~gIev~~ 173 (184) T 2hvw_A 120 SANNTEIYVT-HFPCINCTKALLQAGVKKITYNTAYRIHPFAIELMTQKEVEYVQ 173 (184) T ss_dssp CCTTEEEEEE-ECCCHHHHHHHHHHTEEEEEEEECCSCCHHHHHHHHHHTCEEEE T ss_pred CCCCCEEEEC-CCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEE T ss_conf 3466227987-89859999999981989899770668980999999987998997 No 10 >2q5c_A NTRC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824} Probab=91.78 E-value=0.13 Score=30.80 Aligned_cols=130 Identities=15% Similarity=0.176 Sum_probs=63.9 Q ss_pred HHHHHHHHHCCCE-EEEEHHHHHHHHHC-CCCEEEHHHHCCCCHHCC--CCCCCCCCHHHHHHHHCCCCHHHHHHHHHCC Q ss_conf 9999999987999-99942768999988-995179465348816519--8553237155535533088989999999779 Q gi|254780664|r 30 VEFASRLLSRGIK-IISTGGTCQLLEEE-GIPVTSVFDITKFPEIMG--GRVKTLHPKIYGGILSIRDNPAHMKFMQDHE 105 (536) Q Consensus 30 ~~la~~L~~~g~~-iisTgGTa~~l~~~-gi~v~~Vs~~TgfpEil~--GRVKTLHP~I~ggIL~~r~~~~~~~~l~~~~ 105 (536) .++|+.|.+ |++ |||-||||++|+++ .+||.++. +|+|. ||. -+.|-.+++| |+..-.+.....+.+.++ T Consensus 42 ~~iA~~l~~-~~DVIISRGgTa~~Ir~~~~iPVVeI~-vs~~D-il~al~~a~~~~~ki--avvgf~~~~~~~~~i~~l- 115 (196) T 2q5c_A 42 SKIAFGLQD-EVDAIISRGATSDYIKKSVSIPSISIK-VTRFD-TMRAVYNAKRFGNEL--ALIAYKHSIVDKHEIEAM- 115 (196) T ss_dssp HHHHHHHTT-TCSEEEEEHHHHHHHHTTCSSCEEEEC-CCHHH-HHHHHHHHGGGCSEE--EEEEESSCSSCHHHHHHH- T ss_pred HHHHHHHHC-CCCEEEECCHHHHHHHHHCCCCEEEEC-CCHHH-HHHHHHHHHHHCCCE--EEEECCCCCHHHHHHHHH- T ss_conf 999997543-987999896589999982899779980-78879-999999999758978--999678501589999998- Q ss_pred CCCEEEEEEECCCHHHHHCCCC-CHHHHHHCCCCCCHHHHHHHHCCCC-CCEEEECHHHHHHHH Q ss_conf 9841499994888899731765-3112320023343469998740156-313530899989889 Q gi|254780664|r 106 LESIDLVVVNLYPFEESFCRED-DYYTMVENIDIGGPSMIRAAAKNHD-YVTILTNPQDYPLFL 167 (536) Q Consensus 106 i~~IDlVvvNLYPF~~~v~~~~-~~~~~IEnIDIGGpsmiRAAAKN~~-~V~Vi~dp~dY~~~~ 167 (536) -.+++...-+..-++.-..=. -.++-++-| |||....+.|.|.-- .+.+-+.++--...+ T Consensus 116 -l~~~i~~~~~~~~~e~~~~i~~l~~~G~~vv-VG~~~~~~~A~~~Gl~~ili~Sg~eSI~~Al 177 (196) T 2q5c_A 116 -LGVKIKEFLFSSEDEITTLISKVKTENIKIV-VSGKTVTDEAIKQGLYGETINSGEESLRRAI 177 (196) T ss_dssp -HTCEEEEEEECSGGGHHHHHHHHHHTTCCEE-EECHHHHHHHHHTTCEEEECCCCHHHHHHHH T ss_pred -HCCCEEEEEECCHHHHHHHHHHHHHCCCCEE-ECCHHHHHHHHHCCCCEEEEECCHHHHHHHH T ss_conf -5995599996688999999999998699899-9987999999985997899965499999999 No 11 >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A Probab=86.93 E-value=0.62 Score=25.77 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=29.6 Q ss_pred CCCHHHHHHHCCCCE-EEECCCCCCHHHHHHHHHHCCCEEEEC Q ss_conf 855589999719959-993898779889999998759779974 Q gi|254780664|r 488 FPDGIVEAIKAGVTA-VIQPGGSVRDSEAITVADQHGIAMVFT 529 (536) Q Consensus 488 F~D~ie~aa~~Gi~a-IiqPGGSirD~evI~aan~~gi~m~fT 529 (536) -++-++.+.+.|+++ ++||| .+++|..+.|.++||..+.- T Consensus 83 v~~~v~e~~~~g~~~v~~q~G--~~~~e~~~~a~~~Gi~vI~~ 123 (140) T 1iuk_A 83 LMDHLPEVLALRPGLVWLQSG--IRHPEFEKALKEAGIPVVAD 123 (140) T ss_dssp HTTTHHHHHHHCCSCEEECTT--CCCHHHHHHHHHTTCCEEES T ss_pred HHHHHHHHHHCCCCEEEECCC--CCCHHHHHHHHHCCCEEECC T ss_conf 999999999629898998989--68999999999959979928 No 12 >3ff4_A Uncharacterized protein; structural genomics, PSI- 2, protein structure initiative, midwest center for structural genomics; 2.10A {Cytophaga hutchinsonii atcc 33406} Probab=86.36 E-value=0.98 Score=24.33 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=29.9 Q ss_pred CCHHHHHHHCCCCE-EEECCCCCCHHHHHHHHHHCCCEEEE Q ss_conf 55589999719959-99389877988999999875977997 Q gi|254780664|r 489 PDGIVEAIKAGVTA-VIQPGGSVRDSEAITVADQHGIAMVF 528 (536) Q Consensus 489 ~D~ie~aa~~Gi~a-IiqPGGSirD~evI~aan~~gi~m~f 528 (536) ++-++.+.+.|+++ ++|||+ -|+|..+.|.++||.++. T Consensus 72 ~~~v~e~~~~g~k~vw~q~G~--~~e~~~~~a~~~Gi~vi~ 110 (122) T 3ff4_A 72 LSEYNYILSLKPKRVIFNPGT--ENEELEEILSENGIEPVI 110 (122) T ss_dssp GGGHHHHHHHCCSEEEECTTC--CCHHHHHHHHHTTCEEEE T ss_pred HHHHHHHHHCCCCEEEEECCC--CCHHHHHHHHHCCCEEEC T ss_conf 999999985399999993698--799999999996997995 No 13 >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 Probab=85.19 E-value=0.86 Score=24.73 Aligned_cols=36 Identities=25% Similarity=0.406 Sum_probs=25.1 Q ss_pred CHHHHHHHCCCCEEE-ECCCCCCHHHHHHHHHHCCCEEE Q ss_conf 558999971995999-38987798899999987597799 Q gi|254780664|r 490 DGIVEAIKAGVTAVI-QPGGSVRDSEAITVADQHGIAMV 527 (536) Q Consensus 490 D~ie~aa~~Gi~aIi-qPGGSirD~evI~aan~~gi~m~ 527 (536) |-++.+.+.|++.++ |||+ .++|..+.|.++||.++ T Consensus 84 ~il~e~~~~g~k~v~~q~G~--~~~e~~~~a~~~Gi~vi 120 (138) T 1y81_A 84 QVAKEAVEAGFKKLWFQPGA--ESEEIRRFLEKAGVEYS 120 (138) T ss_dssp HHHHHHHHTTCCEEEECTTS--CCHHHHHHHHHHTCEEE T ss_pred HHHHHHHHCCCCEEEEECCH--HHHHHHHHHHHCCCEEE T ss_conf 99999975699978960764--41999999998499899 No 14 >2d59_A Hypothetical protein PH1109; COA binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.65A {Pyrococcus horikoshii OT3} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* Probab=84.82 E-value=0.97 Score=24.38 Aligned_cols=38 Identities=29% Similarity=0.313 Sum_probs=29.4 Q ss_pred CCHHHHHHHCCCCE-EEECCCCCCHHHHHHHHHHCCCEEEE Q ss_conf 55589999719959-99389877988999999875977997 Q gi|254780664|r 489 PDGIVEAIKAGVTA-VIQPGGSVRDSEAITVADQHGIAMVF 528 (536) Q Consensus 489 ~D~ie~aa~~Gi~a-IiqPGGSirD~evI~aan~~gi~m~f 528 (536) ++-++.+.+.|+++ ++||||. ++|..+.|.++||.++- T Consensus 91 ~~il~~~~~~g~k~v~~~~g~~--~ee~~~~a~~~gi~~v~ 129 (144) T 2d59_A 91 MEYVEQAIKKGAKVVWFQYNTY--NREASKKADEAGLIIVA 129 (144) T ss_dssp HHHHHHHHHHTCSEEEECTTCC--CHHHHHHHHHTTCEEEE T ss_pred HHHHHHHHHCCCCEEEEECCCC--CHHHHHHHHHCCCEEEC T ss_conf 9999999975999999824644--99999999996995790 No 15 >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* Probab=82.44 E-value=1.7 Score=22.52 Aligned_cols=84 Identities=14% Similarity=0.136 Sum_probs=43.1 Q ss_pred CCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHE Q ss_conf 12001167764245567279996156865654520168999999853321320045554275421457878865431111 Q gi|254780664|r 266 DLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAKEVIKVFTEAII 345 (536) Q Consensus 266 D~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~I~~~F~EvIi 345 (536) |.+-+..++..+-+.+.+ ++=|-=++|+. ....++..+.+.-+ -+|+.-..+|.+.++...+-=.+-++ T Consensus 17 ~~~~a~~~a~al~~~Gi~-~iEitl~tp~a----~~~i~~l~~~~~~~------~~vGaGTV~~~~~~~~a~~aGA~Fiv 85 (212) T 2v82_A 17 TPDEALAHVGAVIDAGFD-AVEIPLNSPQW----EQSIPAIVDAYGDK------ALIGAGTVLKPEQVDALARMGCQLIV 85 (212) T ss_dssp CHHHHHHHHHHHHHHTCC-EEEEETTSTTH----HHHHHHHHHHHTTT------SEEEEECCCSHHHHHHHHHTTCCEEE T ss_pred CHHHHHHHHHHHHHCCCC-EEEEECCCCCH----HHHHHHHHHHCCCC------CEEEEECCCCHHHHHHHHHCCCCEEE T ss_conf 999999999999986999-89995799349----99999999966875------07853022247889999854897898 Q ss_pred ECCCCHHHHHHHHCC Q ss_conf 268798999885124 Q gi|254780664|r 346 APTLSEEAADVLAKK 360 (536) Q Consensus 346 AP~f~~eAleiL~~K 360 (536) .|+++++-++..++. T Consensus 86 sP~~~~~v~~~a~~~ 100 (212) T 2v82_A 86 TPNIHSEVIRRAVGY 100 (212) T ss_dssp CSSCCHHHHHHHHHT T ss_pred CCCCCHHHHHHHHHC T ss_conf 998998999999975 No 16 >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A Probab=81.93 E-value=1.5 Score=22.95 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=21.9 Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHC Q ss_conf 555427542145787886543111126879899988512 Q gi|254780664|r 321 IIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAK 359 (536) Q Consensus 321 IIa~N~~vd~~~A~~I~~~F~EvIiAP~f~~eAleiL~~ 359 (536) +|..-.-+|.+.++...+.=.+-++.|+++++-++...+ T Consensus 64 ~vGaGTV~~~~~~~~a~~aGa~fivsP~~~~~v~~~~~~ 102 (205) T 1wa3_A 64 IIGAGTVTSVEQCRKAVESGAEFIVSPHLDEEISQFCKE 102 (205) T ss_dssp EEEEESCCSHHHHHHHHHHTCSEEECSSCCHHHHHHHHH T ss_pred EEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHH T ss_conf 896300012788999986487488679999999999998 No 17 >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 Probab=81.92 E-value=1.2 Score=23.63 Aligned_cols=89 Identities=11% Similarity=0.128 Sum_probs=55.2 Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHH Q ss_conf 83122212001167764245567279996156865654520168999999853321320045554275421457878865 Q gi|254780664|r 260 SYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAKEVIKV 339 (536) Q Consensus 260 SYNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~I~~~ 339 (536) .-....|.+.+..++.-+.+.+.+. +=|--++|+. .++.+...+--| .-+|..-.-+|.+.++...+. T Consensus 21 pvlr~~~~~~~~~~~~al~~~Gi~~-iEITl~t~~a-------~~~i~~l~~~~p----~~~vGaGTVl~~~~~~~a~~a 88 (224) T 1vhc_A 21 PVIALDNADDILPLADTLAKNGLSV-AEITFRSEAA-------ADAIRLLRANRP----DFLIAAGTVLTAEQVVLAKSS 88 (224) T ss_dssp EEECCSSGGGHHHHHHHHHHTTCCE-EEEETTSTTH-------HHHHHHHHHHCT----TCEEEEESCCSHHHHHHHHHH T ss_pred EEEECCCHHHHHHHHHHHHHCCCCE-EEEECCCCHH-------HHHHHHHHHHCC----CEEEEEECCCCHHHHHHHHHH T ss_conf 9996899999999999999879988-9996898039-------999999998689----918962020457999999983 Q ss_pred HHHHHEECCCCHHHHHHHHCC Q ss_conf 431111268798999885124 Q gi|254780664|r 340 FTEAIIAPTLSEEAADVLAKK 360 (536) Q Consensus 340 F~EvIiAP~f~~eAleiL~~K 360 (536) =.+-++.|+++++-++...+. T Consensus 89 GA~FivSP~~~~~v~~~a~~~ 109 (224) T 1vhc_A 89 GADFVVTPGLNPKIVKLCQDL 109 (224) T ss_dssp TCSEEECSSCCHHHHHHHHHT T ss_pred CCCEEECCCCCHHHHHHHHHC T ss_conf 799897278999999999856 No 18 >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta- barrel, lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 Probab=81.13 E-value=0.94 Score=24.45 Aligned_cols=92 Identities=11% Similarity=0.094 Sum_probs=51.5 Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHH Q ss_conf 98883122212001167764245567279996156865654520168999999853321320045554275421457878 Q gi|254780664|r 257 KPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAKEV 336 (536) Q Consensus 257 KeLSYNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~I 336 (536) |-+.-..+.|.+-+..++.-+-+.+.+ ++=|--++|. -.++.+...+--| .=+|..-.-+|.+.++.. T Consensus 27 ~iipvi~~~~~~~a~~~a~al~~~Gi~-~iEitl~tp~-------a~e~i~~l~~~~p----~~~iGaGTV~~~~~~~~a 94 (225) T 1mxs_A 27 RILPVITIAREEDILPLADALAAGGIR-TLEVTLRSQH-------GLKAIQVLREQRP----ELCVGAGTVLDRSMFAAV 94 (225) T ss_dssp SEEEEECCSCGGGHHHHHHHHHHTTCC-EEEEESSSTH-------HHHHHHHHHHHCT----TSEEEEECCCSHHHHHHH T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCC-EEEEECCCCH-------HHHHHHHHHHHCC----CCEEEEEECCCHHHHHHH T ss_conf 878999759999999999999987998-8999589940-------9999999997499----707865303679999999 Q ss_pred HHHHHHHHEECCCCHHHHHHHHCC Q ss_conf 865431111268798999885124 Q gi|254780664|r 337 IKVFTEAIIAPTLSEEAADVLAKK 360 (536) Q Consensus 337 ~~~F~EvIiAP~f~~eAleiL~~K 360 (536) .+-=.+-++.|+|+++-++.-+++ T Consensus 95 ~~aGa~FivsP~~~~~v~~~a~~~ 118 (225) T 1mxs_A 95 EAAGAQFVVTPGITEDILEAGVDS 118 (225) T ss_dssp HHHTCSSEECSSCCHHHHHHHHHC T ss_pred HHCCCCEEECCCCCHHHHHHHHHC T ss_conf 977998998898959999999865 No 19 >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus HB8} PDB: 2yw4_A Probab=80.81 E-value=1.3 Score=23.37 Aligned_cols=86 Identities=12% Similarity=0.139 Sum_probs=56.2 Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHH Q ss_conf 31222120011677642455672799961568656545201689999998533213200455542754214578788654 Q gi|254780664|r 261 YNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAKEVIKVF 340 (536) Q Consensus 261 YNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~I~~~F 340 (536) -....|.+.+..++.-+.+.+.+ +.=|--++|+ -.++.++... | +=+|..-.-+|.+.++...+-= T Consensus 18 vlr~~~~~~a~~~~~al~~~Gi~-~iEitl~tp~-------a~~~i~~l~~--~----~~~iGaGTV~~~~~~~~a~~aG 83 (207) T 2yw3_A 18 LLTVRGGEDLLGLARVLEEEGVG-ALEITLRTEK-------GLEALKALRK--S----GLLLGAGTVRSPKEAEAALEAG 83 (207) T ss_dssp EECCCSCCCHHHHHHHHHHTTCC-EEEEECSSTH-------HHHHHHHHTT--S----SCEEEEESCCSHHHHHHHHHHT T ss_pred EEECCCHHHHHHHHHHHHHCCCC-EEEEECCCCH-------HHHHHHHHCC--C----CCEEEEHHCCCHHHHHHHHHCC T ss_conf 99689999999999999987998-8999689922-------9999998545--7----8589311205778999999809 Q ss_pred HHHHEECCCCHHHHHHHHCC Q ss_conf 31111268798999885124 Q gi|254780664|r 341 TEAIIAPTLSEEAADVLAKK 360 (536) Q Consensus 341 ~EvIiAP~f~~eAleiL~~K 360 (536) .+-++.|+++++-++..+++ T Consensus 84 a~FivSP~~~~~v~~~a~~~ 103 (207) T 2yw3_A 84 AAFLVSPGLLEEVAALAQAR 103 (207) T ss_dssp CSEEEESSCCHHHHHHHHHH T ss_pred CCEEECCCCCHHHHHHHHHC T ss_conf 99898588869999999962 No 20 >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* Probab=78.85 E-value=1.5 Score=22.99 Aligned_cols=94 Identities=17% Similarity=0.219 Sum_probs=61.4 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHH Q ss_conf 58988831222120011677642455672799961568656545201689999998533213200455542754214578 Q gi|254780664|r 255 QGKPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAK 334 (536) Q Consensus 255 ~GKeLSYNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~ 334 (536) +++-+---...|.+.|..++.-+.+.+.+ ++=|--++|.. .++.+...+.-|- =+|..-.-+|.+.++ T Consensus 15 ~~~iipvir~~~~~~a~~i~~al~~~Gi~-~iEItl~tp~a-------~~~i~~l~~~~p~----~~iGaGTV~~~e~~~ 82 (214) T 1wbh_A 15 TGPVVPVIVVKKLEHAVPMAKALVAGGVR-VLNVTLRTECA-------VDAIRAIAKEVPE----AIVGAGTVLNPQQLA 82 (214) T ss_dssp SCSEEEEECCSSGGGHHHHHHHHHHTTCC-EEEEESCSTTH-------HHHHHHHHHHCTT----SEEEEESCCSHHHHH T ss_pred HCCEEEEEECCCHHHHHHHHHHHHHCCCC-EEEEECCCHHH-------HHHHHHHHHHCCC----CEEEECCCCCHHHHH T ss_conf 49989999789999999999999987998-89993798679-------9999999987899----679524545368999 Q ss_pred HHHHHHHHHHEECCCCHHHHHHHHCC Q ss_conf 78865431111268798999885124 Q gi|254780664|r 335 EVIKVFTEAIIAPTLSEEAADVLAKK 360 (536) Q Consensus 335 ~I~~~F~EvIiAP~f~~eAleiL~~K 360 (536) ...+.=.+-++.|+|+++-++..+++ T Consensus 83 ~a~~aGa~FivsP~~~~~v~~~a~~~ 108 (214) T 1wbh_A 83 EVTEAGAQFAISPGLTEPLLKAATEG 108 (214) T ss_dssp HHHHHTCSCEEESSCCHHHHHHHHHS T ss_pred HHHHCCCCEEECCCCCHHHHHHHHHC T ss_conf 99981998998589999999999854 No 21 >3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A Probab=75.56 E-value=4.2 Score=19.77 Aligned_cols=17 Identities=12% Similarity=-0.068 Sum_probs=8.8 Q ss_pred EEEECHHHHHHHHHHHH Q ss_conf 35308999898898753 Q gi|254780664|r 155 TILTNPQDYPLFLAEMD 171 (536) Q Consensus 155 ~Vi~dp~dY~~~~~el~ 171 (536) .|.|+++--..+++.+. T Consensus 88 ivFTS~ngV~~f~~~l~ 104 (286) T 3d8t_A 88 FLATTGVGVRDLLEAGK 104 (286) T ss_dssp EEECCHHHHHHHHHHHH T ss_pred EEEECHHHHHHHHHHHH T ss_conf 99968689999999999 No 22 >2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrolase/RNA complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2 Probab=75.46 E-value=3.4 Score=20.43 Aligned_cols=66 Identities=11% Similarity=0.138 Sum_probs=24.6 Q ss_pred EEEECCEEEEECCCCCC-----HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCEEE Q ss_conf 99968938997296888-----899999999998764200122223487099973668685558999971995999 Q gi|254780664|r 434 VYAKDGRTVGIGSGQTS-----RVDSTRFAAIKAHNISAQADVKSMTNGSVIASEAFYPFPDGIVEAIKAGVTAVI 504 (536) Q Consensus 434 v~ak~~~tiGiGaGQ~s-----RVda~~iA~~KA~~~~~~~~~~~~~~g~vlaSDAFFPF~D~ie~aa~~Gi~aIi 504 (536) |++++++.|+.|..|.+ ...|...|+.+|...... ..+.|+.+.+ -.-|-+=+...+..+||+-|| T Consensus 32 ViV~~~~ii~~g~~~~~~~~~~~~HAE~~ai~~a~~~~~~----~~l~~~tly~-t~EPC~mC~~ai~~agI~~Vv 102 (159) T 2b3j_A 32 IITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGS----WRLEGCTLYV-TLEPCVMCAGTIVMSRIPRVV 102 (159) T ss_dssp EEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTS----SCCTTEEEEE-EECCCHHHHHHHHHTTCSEEE T ss_pred EEEECCEEEEEEECCEECCCCHHHHHHHHHHHHHHHHHCC----CCCCCCEEEE-CCCCCHHHHHHHHHHCCCEEE T ss_conf 9986993898762310058863358999999999998388----7778855740-379968999999996999899 No 23 >2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2 Probab=73.87 E-value=1.7 Score=22.54 Aligned_cols=45 Identities=22% Similarity=0.369 Sum_probs=32.5 Q ss_pred CHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCC Q ss_conf 5589999719-95999389877988999999875977997478544 Q gi|254780664|r 490 DGIVEAIKAG-VTAVIQPGGSVRDSEAITVADQHGIAMVFTGIRHF 534 (536) Q Consensus 490 D~ie~aa~~G-i~aIiqPGGSirD~evI~aan~~gi~m~fTg~RhF 534 (536) |.+..|.+.| +.+||=.||.-=+++|++.|.+.|++++-|..-.| T Consensus 64 di~l~al~~~~~a~lIlTg~~~p~~~vl~la~~~gipvi~t~~dT~ 109 (139) T 2ioj_A 64 DLLLTALEMPNVRCLILTGNLEPVQLVLTKAEERGVPVILTGHDTL 109 (139) T ss_dssp HHHHHHTTCTTEEEEEEETTCCCCHHHHHHHHHHTCCEEECSSCHH T ss_pred HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCHH T ss_conf 8999998578963999939999789999999876994899478799 No 24 >3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} Probab=73.05 E-value=1.5 Score=22.99 Aligned_cols=89 Identities=16% Similarity=0.167 Sum_probs=56.8 Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHH Q ss_conf 83122212001167764245567279996156865654520168999999853321320045554275421457878865 Q gi|254780664|r 260 SYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAKEVIKV 339 (536) Q Consensus 260 SYNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~I~~~ 339 (536) .-....|.+.+..++.-+.+.+.+. +=|--++|-. .++.+...+--| .-+|..-.-+|.+.++...+. T Consensus 17 pvir~~~~~~~~~i~~aL~~~Gi~~-iEitl~~~~a-------~~~i~~l~~~~p----~~~vGaGTV~~~~~~~~a~~a 84 (217) T 3lab_A 17 PVIVIDDLVHAIPMAKALVAGGVHL-LEVTLRTEAG-------LAAISAIKKAVP----EAIVGAGTVCTADDFQKAIDA 84 (217) T ss_dssp EEECCSCGGGHHHHHHHHHHTTCCE-EEEETTSTTH-------HHHHHHHHHHCT----TSEEEEECCCSHHHHHHHHHH T ss_pred EEEECCCHHHHHHHHHHHHHCCCCE-EEEECCCCHH-------HHHHHHHHHHCC----CCEEEEEECCCHHHHHHHHHH T ss_conf 9996899999999999999879988-9996899069-------999999998689----975999962427999999972 Q ss_pred HHHHHEECCCCHHHHHHHHCC Q ss_conf 431111268798999885124 Q gi|254780664|r 340 FTEAIIAPTLSEEAADVLAKK 360 (536) Q Consensus 340 F~EvIiAP~f~~eAleiL~~K 360 (536) =.+-++.|.++++-++..++. T Consensus 85 GA~FivsP~~~~~v~~~a~~~ 105 (217) T 3lab_A 85 GAQFIVSPGLTPELIEKAKQV 105 (217) T ss_dssp TCSEEEESSCCHHHHHHHHHH T ss_pred CCCEEECCCCCHHHHHHHHHC T ss_conf 788877688999999999984 No 25 >3iaa_A CALG2; glycosyltransferase, calicheamicin, TDP, enediyne, TR; HET: TYD; 2.50A {Micromonospora echinospora} Probab=71.51 E-value=5.1 Score=19.11 Aligned_cols=114 Identities=17% Similarity=0.187 Sum_probs=63.7 Q ss_pred CCCCCCCCCCCEEEEEEEEECCCC----HHHHHHHHHHCCCEE--EEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCC Q ss_conf 157788677613698998754568----699999999879999--99427689999889951794653488165198553 Q gi|254780664|r 5 HRKDGDHGEIAVKTALISVHNKTG----VVEFASRLLSRGIKI--ISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVK 78 (536) Q Consensus 5 ~~~~~~~~~~~ikrALiSV~dKtg----l~~la~~L~~~g~~i--isTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVK 78 (536) |.+.|..-...|++.|+-.+---| ...+|+.|.+.|.++ ++++.-...+.+.|+++..+.+. .++.-..+.. T Consensus 9 ~~~~~~~~~~~m~~il~~~~~~~GH~~p~l~la~~L~~rGH~V~v~t~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~ 86 (416) T 3iaa_A 9 HHSSGHIEGRHMAHLLIVNVASHGLILPTLTVVTELVRRGHRVSYVTAGGFAEPVRAAGATVVPYQSE--IIDADAAEVF 86 (416) T ss_dssp -----------CCEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCEEEECCCS--GGGCCHHHHH T ss_pred CCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCEEEECCCC--CCCCCCHHCC T ss_conf 45677865369980899779956379999999999997889899996823677898679879972776--5653301103 Q ss_pred CCCCHHHHHHH--HCCCCHHHHHHHHHCCCCCEEEEEEECCCHH Q ss_conf 23715553553--3088989999999779984149999488889 Q gi|254780664|r 79 TLHPKIYGGIL--SIRDNPAHMKFMQDHELESIDLVVVNLYPFE 120 (536) Q Consensus 79 TLHP~I~ggIL--~~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~ 120 (536) ..+...-...+ .+..........+...-...|+|++..+++. T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pDvv~~~~~~~~ 130 (416) T 3iaa_A 87 GSDDLGVRPHLMYLRENVSVLRATAEALDGDVPDLVLYDDFPFI 130 (416) T ss_dssp HSCSSCHHHHHHHHHHHHHHHHHHHHHHTTSCCSEEEEESTTHH T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCH T ss_conf 65431134689999999999999999972689818998264302 No 26 >3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} Probab=68.40 E-value=5.9 Score=18.65 Aligned_cols=106 Identities=20% Similarity=0.201 Sum_probs=56.2 Q ss_pred CEEEEEEEEECCCC----HHHHHHHHHHCCCEE--EEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHH Q ss_conf 13698998754568----699999999879999--994276899998899517946534881651985532371555355 Q gi|254780664|r 15 AVKTALISVHNKTG----VVEFASRLLSRGIKI--ISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGI 88 (536) Q Consensus 15 ~ikrALiSV~dKtg----l~~la~~L~~~g~~i--isTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggI 88 (536) +-++-|+.-+--.| ...+|+.|.+.|.++ ++++.....++..|+++..+........+.++ .+.......... T Consensus 3 ~~~~il~~~~~g~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 81 (402) T 3ia7_A 3 RQRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKAAGAEVVLYKSEFDTFHVPEV-VKQEDAETQLHL 81 (402) T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHTTCEEEECCCGGGTSSSSSS-SCCTTHHHHHHH T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCEEEECCCCCCCCCCCCC-CCCCCCHHHHHH T ss_conf 9998999899846479999999999998889899997810666888669868973776442345432-233442156789 Q ss_pred HHCCCCHHHHHH-HHHCCCCCEEEEEEECCCHHH Q ss_conf 330889899999-997799841499994888899 Q gi|254780664|r 89 LSIRDNPAHMKF-MQDHELESIDLVVVNLYPFEE 121 (536) Q Consensus 89 L~~r~~~~~~~~-l~~~~i~~IDlVvvNLYPF~~ 121 (536) ...+....-... .+.+.-...|+|+.+.+|+.- T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~~~~ 115 (402) T 3ia7_A 82 VYVRENVAILRAAEEALGDNPPDLVVYDVFPFIA 115 (402) T ss_dssp HHHHHHHHHHHHHHHHHTTCCCSEEEEESTTHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHH T ss_conf 9999999999999998743498689626740027 No 27 >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} Probab=68.33 E-value=5.4 Score=18.92 Aligned_cols=37 Identities=24% Similarity=0.305 Sum_probs=18.6 Q ss_pred CHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEE Q ss_conf 55899997199599938987798899999987597799 Q gi|254780664|r 490 DGIVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMV 527 (536) Q Consensus 490 D~ie~aa~~Gi~aIiqPGGSirD~evI~aan~~gi~m~ 527 (536) +-++.+.+.|++.+.--+|+ .++++.+.|.++||..+ T Consensus 85 ~~~~~~~~~g~k~v~~q~g~-~~~~~~~~a~~~Gi~vi 121 (145) T 2duw_A 85 GVAQEAIAIGAKTLWLQLGV-INEQAAVLAREAGLSVV 121 (145) T ss_dssp HHHHHHHHHTCCEEECCTTC-CCHHHHHHHHTTTCEEE T ss_pred HHHHHHHHCCCCEEEECCCH-HHHHHHHHHHHCCCEEE T ss_conf 99999997499878732516-64999999999599899 No 28 >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* Probab=66.94 E-value=3.1 Score=20.71 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=28.5 Q ss_pred EEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHH Q ss_conf 369899875456869999999987999999427689999 Q gi|254780664|r 16 VKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLE 54 (536) Q Consensus 16 ikrALiSV~dKtgl~~la~~L~~~g~~iisTgGTa~~l~ 54 (536) |++|||.=.-+--=...|+.|.+.|+.++-++-+.+.+. T Consensus 1 M~tAlVTGas~GiG~aiA~~la~~Ga~V~i~~~~~~~~~ 39 (254) T 1zmt_A 1 MSTAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKD 39 (254) T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHH T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH T ss_conf 998999668878899999999986998999969878899 No 29 >2isb_A Fumarase, FUM-1; NP_069927.1, fumarase of FUM-1, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Archaeoglobus fulgidus} SCOP: c.8.9.1 Probab=66.40 E-value=4.9 Score=19.24 Aligned_cols=30 Identities=27% Similarity=0.256 Sum_probs=11.7 Q ss_pred CHHHHHHHHHHHHHHHEECC-CCHHHHHHHH Q ss_conf 21457878865431111268-7989998851 Q gi|254780664|r 329 DQEVAKEVIKVFTEAIIAPT-LSEEAADVLA 358 (536) Q Consensus 329 d~~~A~~I~~~F~EvIiAP~-f~~eAleiL~ 358 (536) |.-+.+.|.+.=+-++|..+ -+++..+-++ T Consensus 100 d~y~~~~l~~~Gv~~~IGKG~~s~~~~~a~k 130 (192) T 2isb_A 100 NPFTPKILEKVECMGIIGKGGMSEEVVEAMR 130 (192) T ss_dssp TTTHHHHHHHCSCEEEEEBSCCCHHHHHHHT T ss_pred HHHHHHHHHHCCEEEEEEECCCCHHHHHHHH T ss_conf 6779999985281899986158877899985 No 30 >1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein structure initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A* Probab=64.76 E-value=2 Score=22.03 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=21.1 Q ss_pred HHCCCCCCHHHHHH--HHCCCCCCEEEECHHHH Q ss_conf 20023343469998--74015631353089998 Q gi|254780664|r 133 VENIDIGGPSMIRA--AAKNHDYVTILTNPQDY 163 (536) Q Consensus 133 IEnIDIGGpsmiRA--AAKN~~~V~Vi~dp~dY 163 (536) .-.|--||-+|+|- -|.+-+...+|+|..-+ T Consensus 90 l~liKGgGgal~rEKiva~~a~~~iiI~D~sK~ 122 (219) T 1o8b_A 90 MQMIKGGGAALTREKIIASVAEKFICIADASKQ 122 (219) T ss_dssp SCEECCCCC-HHHHHHHHHHEEEEEEEEEGGGB T ss_pred HHHHHCCHHHHHHHHHHHHHCCCEEEEECCCHH T ss_conf 435642689999888999835256999742134 No 31 >2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} Probab=60.46 E-value=8.2 Score=17.63 Aligned_cols=53 Identities=21% Similarity=0.271 Sum_probs=34.3 Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHCCCCEEEECCCCCCHH----HHHHHHHHCCCEEE Q ss_conf 3487099973668685558999971995999389877988----99999987597799 Q gi|254780664|r 474 MTNGSVIASEAFYPFPDGIVEAIKAGVTAVIQPGGSVRDS----EAITVADQHGIAMV 527 (536) Q Consensus 474 ~~~g~vlaSDAFFPF~D~ie~aa~~Gi~aIiqPGGSirD~----evI~aan~~gi~m~ 527 (536) ..+|+.|-.-. +|-+.+...+..+||+-|+-....-+|. ...+..++.||... T Consensus 94 ~~~~~tlYvT~-ePC~~Ca~~I~~~GIk~Vvy~~~~~~~~~~~~~~~~~l~~aGI~v~ 150 (178) T 2w4l_A 94 DVKGCSMYVAL-FPCNECAKLIIQAGIKEVIFMSDKYHDSDEATAARLLFNMAGVTFR 150 (178) T ss_dssp CCTTCEEEEEE-CCCHHHHHHHHHTTCCEEEEEECTTTTSHHHHHHHHHHHHHTCEEE T ss_pred CCCCCEEEECC-CCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEE T ss_conf 87798688718-9879999999994989899964678980777999999998899999 No 32 >1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A Probab=55.06 E-value=10 Score=17.01 Aligned_cols=85 Identities=19% Similarity=0.173 Sum_probs=52.1 Q ss_pred HHHHHHHHHHHCCCCC--EEEEEECCEEEEECCCCCCHH-----HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCC Q ss_conf 8899999986005667--799996893899729688889-----999999999876420012222348709997366868 Q gi|254780664|r 416 RDMKFAFKVVKHVKSN--AVVYAKDGRTVGIGSGQTSRV-----DSTRFAAIKAHNISAQADVKSMTNGSVIASEAFYPF 488 (536) Q Consensus 416 ~dL~FA~kv~K~vkSN--AIv~ak~~~tiGiGaGQ~sRV-----da~~iA~~KA~~~~~~~~~~~~~~g~vlaSDAFFPF 488 (536) ..+..|++.....+-+ +-||++++.+|+.|..+..+- .+.-.|+.+|..... ..++.|+.|-+- -.|= T Consensus 17 ~Ai~~A~~~~~~g~~~PvGaVIv~~g~ii~~~~n~~~~~~~~~~HAE~~ai~~a~~~~~----~~~l~g~tlYvT-~EPC 91 (164) T 1wkq_A 17 RAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLG----AYQLDDCILYTS-CEPC 91 (164) T ss_dssp HHHHHHHHHHHTTSSSSCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHT----SSSCTTEEEEEE-ECCC T ss_pred HHHHHHHHHHHCCCCCCEEEEEEECCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCC----CCCCCCCEEEEE-CCCH T ss_conf 99999998855799998899999799899997001002577650189999999987438----877589889986-6843 Q ss_pred CCHHHHHHHCCCCEEEE Q ss_conf 55589999719959993 Q gi|254780664|r 489 PDGIVEAIKAGVTAVIQ 505 (536) Q Consensus 489 ~D~ie~aa~~Gi~aIiq 505 (536) +=+...+..+||+-|+- T Consensus 92 ~mC~~ai~~agI~~Vvy 108 (164) T 1wkq_A 92 PMCLGAIYWARPKAVFY 108 (164) T ss_dssp HHHHHHHHHHCCSEEEE T ss_pred HHHHHHHHHHCCCEEEE T ss_conf 99999999856898999 No 33 >2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A* Probab=53.57 E-value=10 Score=16.85 Aligned_cols=33 Identities=12% Similarity=0.189 Sum_probs=14.6 Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCE Q ss_conf 999971995999389877988999999875977 Q gi|254780664|r 493 VEAIKAGVTAVIQPGGSVRDSEAITVADQHGIA 525 (536) Q Consensus 493 e~aa~~Gi~aIiqPGGSirD~evI~aan~~gi~ 525 (536) +.....|+..+..+.+.+.-.++.+...+.|+. T Consensus 265 ~~l~~~~~~vi~~~~~~l~l~~il~~L~~~Gi~ 297 (373) T 2b3z_A 265 KRLSAFGVNIFTLETERIQIPDVLKILAEEGIM 297 (373) T ss_dssp HHHHTTTCEEEECSSSSCCHHHHHHHHHHTTCC T ss_pred HHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCC T ss_conf 988861871443100134579999998775988 No 34 >2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A* Probab=53.42 E-value=11 Score=16.83 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=19.2 Q ss_pred HCCCCCCHHHHHH--HHCCCCCCEEEECHHHH Q ss_conf 0023343469998--74015631353089998 Q gi|254780664|r 134 ENIDIGGPSMIRA--AAKNHDYVTILTNPQDY 163 (536) Q Consensus 134 EnIDIGGpsmiRA--AAKN~~~V~Vi~dp~dY 163 (536) -.|-=||.+|+|- -|.+-+...+|+|..-+ T Consensus 94 ~lIKGgGgal~rEKiva~~a~~~i~I~D~sK~ 125 (226) T 2pjm_A 94 FLIKGGGGCHTQEKIVDYNANEFVVLVDESKL 125 (226) T ss_dssp CEECCTTSCHHHHHHHHHHSSEEEEEEEGGGE T ss_pred EEEECCCHHHHHHHHHHHHHCCEEEEECCCCC T ss_conf 59974734689899999743349999862100 No 35 >3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structural genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp} Probab=53.23 E-value=9.7 Score=17.08 Aligned_cols=61 Identities=10% Similarity=0.117 Sum_probs=30.6 Q ss_pred HHHHHHHHHCCCCCEEEEEEECCCHHHHHC-----CCC-CHHHHHHCCCCCCHHHHHH--HHCCCCCCEEEECHHHH Q ss_conf 899999997799841499994888899731-----765-3112320023343469998--74015631353089998 Q gi|254780664|r 95 PAHMKFMQDHELESIDLVVVNLYPFEESFC-----RED-DYYTMVENIDIGGPSMIRA--AAKNHDYVTILTNPQDY 163 (536) Q Consensus 95 ~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~-----~~~-~~~~~IEnIDIGGpsmiRA--AAKN~~~V~Vi~dp~dY 163 (536) ..-...++++||+-++ +++.-. .++ ..+.-.-.|-=||-+|+|- -|.+-+...+++|...+ T Consensus 60 ~~t~~~~~~~Gi~l~~--------l~~~~~iDl~iDGADeVd~~l~lIKGGGgallrEKiva~~a~~~iii~DesK~ 128 (224) T 3kwm_A 60 EDSTRKLKALGFDVVD--------LNYAGEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICIIDESKK 128 (224) T ss_dssp HHHHHHHHHTTCCBCC--------HHHHCSEEEEEECCSEECTTSCEECCSSSCHHHHHHHHHTEEEEEEEEEGGGB T ss_pred HHHHHHHHHCCCCCCC--------CCCCCEEEEEEECCHHHCCCCCEEECCCHHHHHHHHHHHHHHCEEEEECCCCE T ss_conf 9999999862897536--------13388669999770322877558831617899989999962137999662313 No 36 >1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 Probab=52.56 E-value=11 Score=16.74 Aligned_cols=27 Identities=11% Similarity=0.047 Sum_probs=9.3 Q ss_pred CEEEEECCCCCHHHHHHHH-HHHHHHHE Q ss_conf 0455542754214578788-65431111 Q gi|254780664|r 319 GGIIAFNREVDQEVAKEVI-KVFTEAII 345 (536) Q Consensus 319 GGIIa~N~~vd~~~A~~I~-~~F~EvIi 345 (536) |..+-.+.+=-..++..|. ..+-.||+ T Consensus 78 ~~~ly~t~ePC~mC~~ai~~agI~rVvy 105 (168) T 1z3a_A 78 DATLYVTLEPCVMCAGAMIHSRIGRVVF 105 (168) T ss_dssp TCEEEEEECCCHHHHHHHHHHTCSEEEE T ss_pred CCEECCCCCCCCCHHHHHHHCCCCEEEE T ss_conf 7402216999733898995368878999 No 37 >2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomics in europe, spine, hydrolase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A* Probab=52.00 E-value=11 Score=16.68 Aligned_cols=38 Identities=11% Similarity=0.067 Sum_probs=24.6 Q ss_pred ECCCCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCC Q ss_conf 736686855589999719959993898779889999998759 Q gi|254780664|r 482 SEAFYPFPDGIVEAIKAGVTAVIQPGGSVRDSEAITVADQHG 523 (536) Q Consensus 482 SDAFFPF~D~ie~aa~~Gi~aIiqPGGSirD~evI~aan~~g 523 (536) .+..+.+.+-++.+++.||..|.-=|| ..++..-=+.| T Consensus 302 ~~~~ldl~~iL~~L~~~Gi~~LLVEGG----~~L~~sfL~~~ 339 (402) T 2g6v_A 302 HKGHLDLVVLMMQLGKQQINSIWVEAG----PTLAGALLQAG 339 (402) T ss_dssp ETTEECHHHHHHHHHHTTCCEEEECCC----HHHHHHHHHHT T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEEEH----HHHHHHHHHCC T ss_conf 477404999999998769999999427----99999998769 No 38 >2pb2_A Acetylornithine/succinyldiaminopimelate aminotransferase; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis; HET: PLP; 1.91A {Salmonella typhimurium LT2} PDB: 2pb0_A* Probab=51.51 E-value=8.5 Score=17.51 Aligned_cols=18 Identities=11% Similarity=0.169 Sum_probs=9.2 Q ss_pred EECCCCCCHHHHHHHHHH Q ss_conf 938987798899999987 Q gi|254780664|r 504 IQPGGSVRDSEAITVADQ 521 (536) Q Consensus 504 iqPGGSirD~evI~aan~ 521 (536) +.|-=.+.++|+-++.+. T Consensus 393 ~~PpL~it~~eId~~l~~ 410 (420) T 2pb2_A 393 FAPSLVVEEADIHEGMQR 410 (420) T ss_dssp ECCCTTCCHHHHHHHHHH T ss_pred EECCCCCCHHHHHHHHHH T ss_conf 928977899999999999 No 39 >3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, thioredoxin fold, structural genomics, PSI- 2; HET: MSE; 1.50A {Staphylococcus aureus subsp} Probab=51.21 E-value=7 Score=18.11 Aligned_cols=33 Identities=12% Similarity=0.337 Sum_probs=19.4 Q ss_pred CEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCC Q ss_conf 27999615686565452016899999985332132 Q gi|254780664|r 283 AACVIVKHMNPCGVATADTLVEAYRRALSCDPISA 317 (536) Q Consensus 283 Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SA 317 (536) +.++|+||..-||++.. ...-|++-+....+.. T Consensus 25 ~~vlIFKHSt~C~IS~~--a~~~~e~~~~~~~~~~ 57 (112) T 3iv4_A 25 KYVFVLKHSETCPISAN--AYDQFNKFLYERDMDG 57 (112) T ss_dssp SEEEEEEECTTCHHHHH--HHHHHHHHHHHHTCCE T ss_pred CCEEEEEECCCCHHHHH--HHHHHHHHCCCCCCCE T ss_conf 97899970898850599--9999986321367876 No 40 >1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A Probab=51.08 E-value=11 Score=16.58 Aligned_cols=68 Identities=12% Similarity=0.168 Sum_probs=32.5 Q ss_pred EEEEE-ECCEEEEECCCCCCH-----HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCEEEE Q ss_conf 79999-689389972968888-----999999999987642001222234870999736686855589999719959993 Q gi|254780664|r 432 AVVYA-KDGRTVGIGSGQTSR-----VDSTRFAAIKAHNISAQADVKSMTNGSVIASEAFYPFPDGIVEAIKAGVTAVIQ 505 (536) Q Consensus 432 AIv~a-k~~~tiGiGaGQ~sR-----Vda~~iA~~KA~~~~~~~~~~~~~~g~vlaSDAFFPF~D~ie~aa~~Gi~aIiq 505 (536) |+++. +++++|+.|--++.. .+|--.|+.+|.... ...++|+.|.+- .-|=+.+...+..+||+-|+- T Consensus 38 aviV~~~~g~Ii~~g~N~~~~~~d~t~HAE~~Ai~~a~~~~-----~~~l~~~tlyvT-lEPC~mC~~ai~~~gI~rVv~ 111 (161) T 1p6o_A 38 GCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRLE-----GKVYKDTTLYTT-LSPCDMCTGAIIMYGIPRCVV 111 (161) T ss_dssp EEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHHHCSCC-----HHHHTTEEEEEE-ECCCHHHHHHHHHHTCCEEEE T ss_pred EEEEECCCCEEEEEEECEEECCCCCCCCHHHHHHHHHHHCC-----CCCCCCCEEEEC-CCCCHHHHHHHHHHCCCEEEE T ss_conf 99998599969998613000479997579899998764128-----976778368852-688799999999969398999 No 41 >3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori} Probab=50.66 E-value=12 Score=16.54 Aligned_cols=30 Identities=13% Similarity=0.091 Sum_probs=14.2 Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHCCC Q ss_conf 99997199599938987798899999987597 Q gi|254780664|r 493 VEAIKAGVTAVIQPGGSVRDSEAITVADQHGI 524 (536) Q Consensus 493 e~aa~~Gi~aIiqPGGSirD~evI~aan~~gi 524 (536) +.+.+.|++.+|.|.- .+++.|+.+-+..| T Consensus 197 ~~l~~~g~~~~v~~~p--s~~~li~~a~~l~~ 226 (229) T 3p9z_A 197 LYLQEQGIPSYIAKKP--SLEACLELALSLRI 226 (229) T ss_dssp HHHHHTTCCEEECSSS--SHHHHHHHHHHTC- T ss_pred HHHHHCCCCEEECCCC--CHHHHHHHHHHHHH T ss_conf 9999769956984999--98999999999754 No 42 >3kd8_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; structural genomics, PSI-2, protein genomics, MCSG, glycolysis isomerase; 2.60A {Thermoplasma acidophilum} PDB: 3idd_A Probab=49.05 E-value=5.1 Score=19.10 Aligned_cols=11 Identities=27% Similarity=0.468 Sum_probs=7.2 Q ss_pred CEEEEEEEEEC Q ss_conf 13698998754 Q gi|254780664|r 15 AVKTALISVHN 25 (536) Q Consensus 15 ~ikrALiSV~d 25 (536) .|||.++=|-| T Consensus 3 ~MkrviliVlD 13 (399) T 3kd8_A 3 AMKSIILIVLD 13 (399) T ss_dssp -CCEEEEEEEE T ss_pred CCCEEEEEEEC T ss_conf 88869999857 No 43 >2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} Probab=47.76 E-value=13 Score=16.23 Aligned_cols=66 Identities=18% Similarity=0.108 Sum_probs=26.8 Q ss_pred EEEECCEEEEECCCCCC-----HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCEEE Q ss_conf 99968938997296888-----899999999998764200122223487099973668685558999971995999 Q gi|254780664|r 434 VYAKDGRTVGIGSGQTS-----RVDSTRFAAIKAHNISAQADVKSMTNGSVIASEAFYPFPDGIVEAIKAGVTAVI 504 (536) Q Consensus 434 v~ak~~~tiGiGaGQ~s-----RVda~~iA~~KA~~~~~~~~~~~~~~g~vlaSDAFFPF~D~ie~aa~~Gi~aIi 504 (536) |+++|+++||.|.-|.. -.+|.-.|+.+|..... ...++|+.+-+-- -|=+-+...+..+||+-|+ T Consensus 41 VIV~~g~IIa~g~N~~~~~~~~~~HAe~~ai~~a~~~~~----~~~l~~~~lyvTl-EPC~mC~~ai~~a~I~rVv 111 (179) T 2nx8_A 41 VIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEG----NWRLLDTTLFVTI-EPCVMCSGAIGLARIPHVI 111 (179) T ss_dssp EEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHT----SSCCTTEEEEEEE-CCBHHHHHHHHHTTCCEEE T ss_pred EEEECCEEEEEECCEEECCCCCCHHHHHHHHHHHHHHHC----CCCCCCCEEECCC-CCCHHHHHHHHHHCCCEEE T ss_conf 999899999986151305899723299988999998608----8737676244576-8667999999982868499 No 44 >2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural genomics, PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp} Probab=47.68 E-value=13 Score=16.22 Aligned_cols=29 Identities=17% Similarity=0.071 Sum_probs=17.6 Q ss_pred HHHHHCCCCC-CEEEECHHHHHHHHHHHHC Q ss_conf 9987401563-1353089998988987530 Q gi|254780664|r 144 IRAAAKNHDY-VTILTNPQDYPLFLAEMDV 172 (536) Q Consensus 144 iRAAAKN~~~-V~Vi~dp~dY~~~~~el~~ 172 (536) -||.+.+-.. ++|-++|.++...++-.+. T Consensus 23 ~~a~~~gv~~ii~~~~~~~~~~~~~~l~~~ 52 (265) T 2gzx_A 23 TRAREAGVDRMFVVGFNKSTIERAMKLIDE 52 (265) T ss_dssp HHHHHTTCCEEEEEECSHHHHHHHHHHHHH T ss_pred HHHHHCCCCEEEEECCCHHHHHHHHHHHHH T ss_conf 999987998899925899999999999965 No 45 >2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil...; TM1828, structural genomics, PSI-2; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2 Probab=46.70 E-value=13 Score=16.11 Aligned_cols=17 Identities=18% Similarity=0.434 Sum_probs=5.9 Q ss_pred HHHHHHCCCCEEEECCC Q ss_conf 89999719959993898 Q gi|254780664|r 492 IVEAIKAGVTAVIQPGG 508 (536) Q Consensus 492 ie~aa~~Gi~aIiqPGG 508 (536) ++.+.+.||..|.-=|| T Consensus 279 L~~L~~~Gi~slLVEGG 295 (360) T 2hxv_A 279 LRNLYERDIDSVLVEGG 295 (360) T ss_dssp HHHHHHTTCCEEEECCC T ss_pred HHHHHHCCCCEEEEEEH T ss_conf 99998679989999236 No 46 >1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1 Probab=46.66 E-value=13 Score=16.11 Aligned_cols=58 Identities=12% Similarity=0.096 Sum_probs=30.7 Q ss_pred HHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHCC Q ss_conf 9999977998414999948888997317653112320023343469998740156313530899989889875302 Q gi|254780664|r 98 MKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVN 173 (536) Q Consensus 98 ~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~el~~~ 173 (536) .+.|+++|..++-+=+...=|.. ...+.+.+.++| +|. -.|.|+++--..+.+.|+.. T Consensus 41 ~~~L~~~G~~~~~~Pli~i~~~~-----~~~l~~~~~~l~------------~y~-~iIFTS~naV~~f~~~l~~~ 98 (286) T 1jr2_A 41 IRELGLYGLEATLIPVLSFEFLS-----LPSFSEKLSHPE------------DYG-GLIFTSPRAVEAAELCLEQN 98 (286) T ss_dssp HHHHHTTTCEEEEEECEEEEECC-----HHHHHHHHTCGG------------GCS-EEEECCHHHHHHHHHHHHHT T ss_pred HHHHHHCCCCEEEECCEEEEECC-----HHHHHHHHHCHH------------HCC-EEEEECHHHHHHHHHHHHHH T ss_conf 99999889978998998888387-----589999872831------------157-89997869999999999873 No 47 >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Probab=46.01 E-value=10 Score=16.96 Aligned_cols=17 Identities=12% Similarity=0.178 Sum_probs=8.9 Q ss_pred EECCCCCCHHHHHHHHH Q ss_conf 93898779889999998 Q gi|254780664|r 504 IQPGGSVRDSEAITVAD 520 (536) Q Consensus 504 iqPGGSirD~evI~aan 520 (536) +.|-=-+.|+|+-++.+ T Consensus 372 ~~Ppl~it~~eid~~l~ 388 (395) T 1vef_A 372 FLPPLVIEKEDLERVVE 388 (395) T ss_dssp ECCCTTCCHHHHHHHHH T ss_pred EECCCCCCHHHHHHHHH T ss_conf 97984599999999999 No 48 >2vld_A NUCS, UPF0286 protein pyrab01260; endonuclease, hydrolase; 2.60A {Pyrococcus abyssi} Probab=45.58 E-value=11 Score=16.70 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=21.9 Q ss_pred HHHHEECCCCHHHHHHHHCCCCCEEEECCC Q ss_conf 311112687989998851245531563167 Q gi|254780664|r 341 TEAIIAPTLSEEAADVLAKKPSMRFLKTSS 370 (536) Q Consensus 341 ~EvIiAP~f~~eAleiL~~KKnlRil~~~~ 370 (536) .-+++||++++.|.+.+.. .+++.+.+.. T Consensus 204 rGIlvA~~it~~a~~ll~~-~Gie~~~~~p 232 (251) T 2vld_A 204 RGILVAPSLTEGAKKLLEK-EGLEFRKLEP 232 (251) T ss_dssp EEEEEESCBCHHHHHHHHH-HTCEEEECCC T ss_pred EEEEECCCCCHHHHHHHHH-CCCEEEEECC T ss_conf 6999868699899999997-8977999683 No 49 >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 Probab=45.12 E-value=14 Score=15.95 Aligned_cols=97 Identities=16% Similarity=0.235 Sum_probs=60.9 Q ss_pred CCCCCCCCCCEEEEEEEEECCCCH-HHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHC-CCCHHCCCCCCCCCCH Q ss_conf 577886776136989987545686-99999999879999994276899998899517946534-8816519855323715 Q gi|254780664|r 6 RKDGDHGEIAVKTALISVHNKTGV-VEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDIT-KFPEIMGGRVKTLHPK 83 (536) Q Consensus 6 ~~~~~~~~~~ikrALiSV~dKtgl-~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~T-gfpEil~GRVKTLHP~ 83 (536) |+-...|+++=|.|||.=.-+ || ..+|+.|.+.|..++-++-....+.+. ++++. .+++..+++|.+++-- T Consensus 8 ~~~~~~g~L~gKvalITGgs~-GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~------~~el~~~~~~~~~~~~~~~~~D 80 (303) T 1yxm_A 8 RSYLAPGLLQGQVAIVTGGAT-GIGKAIVKELLELGSNVVIASRKLERLKSA------ADELQANLPPTKQARVIPIQCN 80 (303) T ss_dssp CCSBCTTTTTTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHH------HHHHHHTSCTTCCCCEEEEECC T ss_pred CCCCCCCCCCCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHH------HHHHHHHHCCCCCCEEEEEECC T ss_conf 888899877979899938986-899999999998799899997988999999------9999843042569659999745 Q ss_pred HHHHHHHCCCCHHHHHHHHH---CCCCCEEEEEEECC Q ss_conf 55355330889899999997---79984149999488 Q gi|254780664|r 84 IYGGILSIRDNPAHMKFMQD---HELESIDLVVVNLY 117 (536) Q Consensus 84 I~ggIL~~r~~~~~~~~l~~---~~i~~IDlVvvNLY 117 (536) + .++++.+.+-+ .....||++|.|=. T Consensus 81 v--------t~~~~v~~~v~~~~~~~G~iDiLVnnAg 109 (303) T 1yxm_A 81 I--------RNEEEVNNLVKSTLDTFGKINFLVNNGG 109 (303) T ss_dssp T--------TCHHHHHHHHHHHHHHHSCCCEEEECCC T ss_pred C--------CCHHHHHHHHHHHHHHCCCCCEEEECCC T ss_conf 8--------9999999999999997399989998998 No 50 >1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1 Probab=45.00 E-value=14 Score=15.93 Aligned_cols=64 Identities=11% Similarity=0.194 Sum_probs=30.3 Q ss_pred CHHHHHHHHHCCCCCEEEEE---EECCCHHHHHCCCC-CHHHHHHCCCCCCHHHHHH--HHCCCCCCEEEECHHHH Q ss_conf 98999999977998414999---94888899731765-3112320023343469998--74015631353089998 Q gi|254780664|r 94 NPAHMKFMQDHELESIDLVV---VNLYPFEESFCRED-DYYTMVENIDIGGPSMIRA--AAKNHDYVTILTNPQDY 163 (536) Q Consensus 94 ~~~~~~~l~~~~i~~IDlVv---vNLYPF~~~v~~~~-~~~~~IEnIDIGGpsmiRA--AAKN~~~V~Vi~dp~dY 163 (536) .......++++||+.+++-- .++| + .++ ..+.-.-.|-=||=+|+|- .|.+-+...+|+|..-+ T Consensus 53 S~~t~~~~~~~Gi~~~~l~~~~~iDia-----i-DGaDevd~~l~lIKGgGgallrEKiva~~a~~~i~I~DesKl 122 (219) T 1m0s_A 53 SKESEELLRKQGIEVFNANDVSSLDIY-----V-DGADEINPQKMMIKGGGAALTREKIVAALAKKFICIVDSSKQ 122 (219) T ss_dssp SHHHHHHHHHTTCCBCCGGGCSCEEEE-----E-ECCSEECTTSCEECCTTSCHHHHHHHHHHEEEEEEEEEGGGB T ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCEE-----C-CCHHHCCCCCCCHHCCCHHHHHHHHHHHHHHCEEEEECCCHH T ss_conf 689999999879973344435654532-----3-645530847586215838888989999850027999524401 No 51 >1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B Probab=44.92 E-value=14 Score=15.93 Aligned_cols=16 Identities=31% Similarity=0.627 Sum_probs=9.6 Q ss_pred CCEEEEEEEEECCCCH Q ss_conf 6136989987545686 Q gi|254780664|r 14 IAVKTALISVHNKTGV 29 (536) Q Consensus 14 ~~ikrALiSV~dKtgl 29 (536) .|+|-|.|+|||..|. T Consensus 9 ~p~rvavitvsD~rg~ 24 (172) T 1mkz_A 9 IPTRIAILTVSNRRGE 24 (172) T ss_dssp CCCEEEEEEECSSCCG T ss_pred CCCEEEEEEEECCCCC T ss_conf 6868999998489886 No 52 >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 Probab=44.61 E-value=14 Score=15.89 Aligned_cols=17 Identities=6% Similarity=0.159 Sum_probs=8.1 Q ss_pred EECCCCCCHHHHHHHHH Q ss_conf 93898779889999998 Q gi|254780664|r 504 IQPGGSVRDSEAITVAD 520 (536) Q Consensus 504 iqPGGSirD~evI~aan 520 (536) +.|-=.+-|+|+=+..+ T Consensus 404 ~~Ppl~it~e~id~~~~ 420 (433) T 1z7d_A 404 LTPPLCITKEQLDECTE 420 (433) T ss_dssp ECCCTTCCHHHHHHHHH T ss_pred EECCCCCCHHHHHHHHH T ss_conf 97996889999999999 No 53 >2x4l_A Ferric-siderophore receptor protein; transport; 1.50A {Streptomyces coelicolor} Probab=43.27 E-value=5.1 Score=19.13 Aligned_cols=92 Identities=14% Similarity=0.170 Sum_probs=49.8 Q ss_pred EEEECCCCH-HHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHH--HHHCCCCHHH Q ss_conf 987545686-9999999987999999427689999889951794653488165198553237155535--5330889899 Q gi|254780664|r 21 ISVHNKTGV-VEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGG--ILSIRDNPAH 97 (536) Q Consensus 21 iSV~dKtgl-~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~gg--IL~~r~~~~~ 97 (536) ++|.|-.|- +.|-+ .==+|++.++++..|-+.|+++.-|...+..+....- .+...+.+ .+ .+..+..+-+ T Consensus 29 ~titD~~G~~Vt~~~----~P~RVV~~~~~~~~l~~lg~~~vgv~~~~~~~~~~~~-~~~~~~~~-~~~~~vg~~~~~~n 102 (325) T 2x4l_A 29 WSFKDDRGTTVKLDK----VPANIVAFTGVAAALFDYGVEVKGVFGPTTTKDGKPD-VQAGDLDV-DKVTVLGNEWGKLN 102 (325) T ss_dssp EEEECTTSCEEEESS----CCSSEEEEHHHHHHHHHTTCCCSEEESSCBCTTSCBC-GGGTTCCT-TTSEEEESSTTCCC T ss_pred EEEEECCCCEEECCC----CCCEEEECCCHHHHHHHCCCCEEEEECCCCCCCCCCH-HHHCCCCC-CCCCEECCCCCCCC T ss_conf 889979999868789----9988998896299999869966999714657776620-33302220-24852067889989 Q ss_pred HHHHHHCCCCCEEEEEEECCCHHH Q ss_conf 999997799841499994888899 Q gi|254780664|r 98 MKFMQDHELESIDLVVVNLYPFEE 121 (536) Q Consensus 98 ~~~l~~~~i~~IDlVvvNLYPF~~ 121 (536) .+.+-.+ . =|||++.-|-+.. T Consensus 103 ~E~I~al--~-PDLIi~~~~~~~~ 123 (325) T 2x4l_A 103 VEKYASL--A-PEVLITTTFDTAG 123 (325) T ss_dssp HHHHHHT--C-CSEEEEEECSTTC T ss_pred HHHHHHC--C-CCEEEEECCCCCC T ss_conf 9999852--9-9989993556766 No 54 >1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2 Probab=41.37 E-value=16 Score=15.55 Aligned_cols=84 Identities=12% Similarity=0.100 Sum_probs=54.8 Q ss_pred HHHHHHHHHHHC--CCCCEEEEEECCEEEEECCCCCCH-----HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCC Q ss_conf 889999998600--566779999689389972968888-----9999999999876420012222348709997366868 Q gi|254780664|r 416 RDMKFAFKVVKH--VKSNAVVYAKDGRTVGIGSGQTSR-----VDSTRFAAIKAHNISAQADVKSMTNGSVIASEAFYPF 488 (536) Q Consensus 416 ~dL~FA~kv~K~--vkSNAIv~ak~~~tiGiGaGQ~sR-----Vda~~iA~~KA~~~~~~~~~~~~~~g~vlaSDAFFPF 488 (536) ..|..||+.... +. =+-|+++++.+|+.|..+..+ ..|--.|+.+|..... ...++|+.|-+-- .|= T Consensus 29 ~Al~~A~~a~~~g~~P-VGaVIV~~~~ii~~g~n~~~~~~~~~~HAE~~ai~~a~~~~~----~~~l~~~tlY~Tl-EPC 102 (171) T 1wwr_A 29 VALREAKRAFEKGEVP-VGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLN----TKYLEGCELYVTL-EPC 102 (171) T ss_dssp HHHHHHHHHHHTTSCC-CEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHT----CSCCTTEEEEESS-CCB T ss_pred HHHHHHHHHHHCCCCC-EEEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC----CCCCCCCEEECCC-CCC T ss_conf 9999999861369998-999999899698653366446999731499999999997608----6556786885315-878 Q ss_pred CCHHHHHHHCCCCEEEE Q ss_conf 55589999719959993 Q gi|254780664|r 489 PDGIVEAIKAGVTAVIQ 505 (536) Q Consensus 489 ~D~ie~aa~~Gi~aIiq 505 (536) +-+...+..+||+-||- T Consensus 103 ~mC~~ai~~sgI~rVvy 119 (171) T 1wwr_A 103 IMCSYALVLSRIEKVIF 119 (171) T ss_dssp HHHHHHHHHTTCSEEEE T ss_pred HHHHHHHHHHCCCEEEE T ss_conf 88999999858885999 No 55 >3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.50A {Saccharomyces cerevisiae YJM789} Probab=40.70 E-value=15 Score=15.72 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=21.9 Q ss_pred EEEECCCCCHHHHHHHHHH----HHHHHEECCCCHHHHHHHHCCCCCEEEE Q ss_conf 5554275421457878865----4311112687989998851245531563 Q gi|254780664|r 321 IIAFNREVDQEVAKEVIKV----FTEAIIAPTLSEEAADVLAKKPSMRFLK 367 (536) Q Consensus 321 IIa~N~~vd~~~A~~I~~~----F~EvIiAP~f~~eAleiL~~KKnlRil~ 367 (536) +|.=...=+.+.|+.+.+. ++=+.+.--.+++..++++.=+-=|||. T Consensus 250 ~v~H~FsG~~~~a~~~l~lg~~~~~s~~~~~~~~~~~~~~vk~iPldrlLl 300 (401) T 3e2v_A 250 LVVHSFTGSAIDLQKLLNLSPNIFIGVNGCSLRTEENLAVVKQIPTERLLL 300 (401) T ss_dssp EEECSCCCCHHHHHHHHHHCTTEEEEECGGGGSSHHHHHHHHTSCGGGEEE T ss_pred EEEEECCCCHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHHHCCHHHEEE T ss_conf 699805796788777750587499987665434567999998699467798 No 56 >1y8a_A Hypothetical protein AF1437; structural genomics, protein structure initiative, PSI, midwest center for structural genomics, MCSG; 1.40A {Archaeoglobus fulgidus dsm 4304} SCOP: c.108.1.24 Probab=40.42 E-value=15 Score=15.66 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=12.6 Q ss_pred CCHHHHHHHHCCCCCCEEEECHHHHHH Q ss_conf 434699987401563135308999898 Q gi|254780664|r 139 GGPSMIRAAAKNHDYVTILTNPQDYPL 165 (536) Q Consensus 139 GGpsmiRAAAKN~~~V~Vi~dp~dY~~ 165 (536) |-..+++..-+++....+-++..+|.. T Consensus 107 g~~~li~~lk~~~~~~iisg~~~~~~~ 133 (332) T 1y8a_A 107 DAEKAMATLQERWTPVVISTSYTQYLR 133 (332) T ss_dssp THHHHHHHHHTTCEEEEEEEEEHHHHH T ss_pred CHHHHHHHHHHCCCEEEEECCCHHHHH T ss_conf 499999999862977898178289999 No 57 >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 Probab=39.45 E-value=17 Score=15.35 Aligned_cols=79 Identities=16% Similarity=0.236 Sum_probs=44.1 Q ss_pred EEEEEEEECCCCH-HHHHHHHHHCC--CEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCC Q ss_conf 6989987545686-99999999879--99999427689999889951794653488165198553237155535533088 Q gi|254780664|r 17 KTALISVHNKTGV-VEFASRLLSRG--IKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRD 93 (536) Q Consensus 17 krALiSV~dKtgl-~~la~~L~~~g--~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~ 93 (536) |++||.=..+ || .++|+.|.+.| +.++.++-+...+.+ ..+..++|+..+. .+-. T Consensus 4 K~ilITGas~-GIG~a~a~~La~~G~~~~Vi~~~R~~~~~~~-------------l~~~~~~~~~~~~--------~D~s 61 (250) T 1yo6_A 4 GSVVVTGANR-GIGLGLVQQLVKDKNIRHIIATARDVEKATE-------------LKSIKDSRVHVLP--------LTVT 61 (250) T ss_dssp SEEEESSCSS-HHHHHHHHHHHTCTTCCEEEEEESSGGGCHH-------------HHTCCCTTEEEEE--------CCTT T ss_pred CEEEEECCCC-HHHHHHHHHHHHCCCCCEEEEEECCHHHHHH-------------HHHHHCCCEEEEE--------EECC T ss_conf 9999948887-9999999999977998789999699999999-------------9872189659999--------8558 Q ss_pred CHHHHHHH-----HHCCCCCEEEEEEECC Q ss_conf 98999999-----9779984149999488 Q gi|254780664|r 94 NPAHMKFM-----QDHELESIDLVVVNLY 117 (536) Q Consensus 94 ~~~~~~~l-----~~~~i~~IDlVvvNLY 117 (536) +++..+++ +.++-..||++|.|=- T Consensus 62 ~~~~v~~~~~~~~~~~g~~~iDilinNAG 90 (250) T 1yo6_A 62 CDKSLDTFVSKVGEIVGSDGLSLLINNAG 90 (250) T ss_dssp CHHHHHHHHHHHHHHHGGGCCCEEEECCC T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 99999999999999848998589997885 No 58 >2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotide, structural genomics, NPPSFA; 2.80A {Thermus thermophilus HB8} Probab=39.27 E-value=17 Score=15.33 Aligned_cols=19 Identities=11% Similarity=0.193 Sum_probs=9.9 Q ss_pred HHCCCCCCCCCCCCCCCHH Q ss_conf 2105898883122212001 Q gi|254780664|r 252 VLVQGKPLSYNNINDLDAA 270 (536) Q Consensus 252 ~ql~GKeLSYNNllD~daA 270 (536) +-|.|+|+|+-=+.|-... T Consensus 181 E~l~G~E~s~~~~~dg~~~ 199 (417) T 2ip4_A 181 EYLEGEEATVLALTDGETI 199 (417) T ss_dssp ECCCSCEEEEEEEESSSCE T ss_pred HHHCCCCCEEEEEECCCCC T ss_conf 5635455258999637853 No 59 >1qb7_A APRT, adenine phosphoribosyltransferase; dinucleotide binding fold; HET: ADE CIT; 1.50A {Leishmania donovani} SCOP: c.61.1.1 PDB: 1qb8_A* 1qcc_A* 1qcd_A 1mzv_A* Probab=38.79 E-value=7.7 Score=17.81 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=13.3 Q ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHC Q ss_conf 799961568656545201689999998533 Q gi|254780664|r 284 ACVIVKHMNPCGVATADTLVEAYRRALSCD 313 (536) Q Consensus 284 a~vIvKH~NPCGvA~~~~~~~Ay~~A~~~D 313 (536) -++||--. +++|.++..+.+...++. T Consensus 140 rVlIVDDv----iaTGgT~~a~~~ll~~~G 165 (236) T 1qb7_A 140 RVVLIDDV----LATGGTALSGLQLVEASD 165 (236) T ss_dssp EEEEEEEE----ESSCHHHHHHHHHHHHTT T ss_pred EEEEEEEE----ECCCHHHHHHHHHHHHCC T ss_conf 79999601----635669999999999879 No 60 >3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infectious disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1} Probab=38.51 E-value=17 Score=15.32 Aligned_cols=30 Identities=10% Similarity=0.093 Sum_probs=17.0 Q ss_pred HHHHHHCCCCCCE-EEECHHHHHHHHHHHHC Q ss_conf 9998740156313-53089998988987530 Q gi|254780664|r 143 MIRAAAKNHDYVT-ILTNPQDYPLFLAEMDV 172 (536) Q Consensus 143 miRAAAKN~~~V~-Vi~dp~dY~~~~~el~~ 172 (536) +-||.+.|-..+. +-+++++....++-.+. T Consensus 58 l~rA~~~gV~~ii~~g~~~~~~~~a~~La~~ 88 (325) T 3ipw_A 58 LQRAERNGLSHIIITSGCLNDFKKAIEIINK 88 (325) T ss_dssp HHHHHHTTEEEEEECCCSHHHHHHHHHHHHH T ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHHHHH T ss_conf 9999986999899923999999999999986 No 61 >3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A {Alicyclobacillus acidocaldarius} Probab=38.07 E-value=18 Score=15.20 Aligned_cols=19 Identities=16% Similarity=0.350 Sum_probs=10.0 Q ss_pred HHHHHHHHCCCCCEEEEEE Q ss_conf 9999999779984149999 Q gi|254780664|r 96 AHMKFMQDHELESIDLVVV 114 (536) Q Consensus 96 ~~~~~l~~~~i~~IDlVvv 114 (536) .+++.|+++|+..|-|++- T Consensus 57 ~~l~~m~~~G~N~Vrl~~~ 75 (343) T 3civ_A 57 ASMRALAEQPFNWVTLAFA 75 (343) T ss_dssp HHHHHHHHSSCSEEEEEEE T ss_pred HHHHHHHHCCCCEEEEEEE T ss_conf 9999999859988999610 No 62 >1kid_A Groel (HSP60 class); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Escherichia coli} SCOP: c.8.5.1 PDB: 1fya_A 1fy9_A 1la1_A 1jon_A 1dk7_A 1dkd_A Probab=37.98 E-value=13 Score=16.18 Aligned_cols=98 Identities=26% Similarity=0.285 Sum_probs=49.6 Q ss_pred HHEECCCCHHHHHHH---HCCCCCEEEECCCCCCCCCCC----CEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHH Q ss_conf 111268798999885---124553156316766777666----4020321022310123345310001246777868898 Q gi|254780664|r 343 AIIAPTLSEEAADVL---AKKPSMRFLKTSSLLDFHGEE----IVLKTVSGGILVQTRDNVVDNKELTVVTKRSPTDQEL 415 (536) Q Consensus 343 vIiAP~f~~eAleiL---~~KKnlRil~~~~~~~~~~~~----~~~rsi~GG~LvQ~~D~~~~~~~~~vVT~~~pt~~e~ 415 (536) +|||.+|+++||..| +.|.++++..++.. .+.... .++--+.||.++-+. ... +++.++ . T Consensus 75 lIIA~di~~eaL~~Lv~N~~kg~l~v~aVkaP-gfG~~r~~~LeDLAilTGa~vi~~~-~g~---~l~~~~-----~--- 141 (203) T 1kid_A 75 LIIAEDVEGEALATLVVNTMRGIVKVAAVKAP-GFGDRRKAMLQDIATLTGGTVISEE-IGM---ELEKAT-----L--- 141 (203) T ss_dssp EEEESEECHHHHHHHHHHHHTTSCCEEEEECC-SCHHHHHHHHHHHHHHHTCCCBCGG-GTC---CGGGCC-----G--- T ss_pred EEEECCCCHHHHHHHHHHHCCCCCCEEEECCC-CCCHHHHHHHHHHHHHHCCEEECHH-CCC---CCCCCC-----H--- T ss_conf 99954106889999998640587532464388-8776789999999998399986510-277---624399-----8--- Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCEEEEECCCCCC----HHHHHHHHHHHH Q ss_conf 88999999860056677999968938997296888----899999999998 Q gi|254780664|r 416 RDMKFAFKVVKHVKSNAVVYAKDGRTVGIGSGQTS----RVDSTRFAAIKA 462 (536) Q Consensus 416 ~dL~FA~kv~K~vkSNAIv~ak~~~tiGiGaGQ~s----RVda~~iA~~KA 462 (536) .+ .-+-.-|++.++..++=-|.|... ||+.++-.++++ T Consensus 142 ~~---------LGsa~kv~itk~~T~ii~g~g~~~~I~~Ri~~Lk~~l~~~ 183 (203) T 1kid_A 142 ED---------LGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEA 183 (203) T ss_dssp GG---------CEEEEEEEECSSCEEEEEECCCHHHHHHHHHHHHHHHHHC T ss_pred HH---------CCCCCEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHC T ss_conf 68---------8975589987987089758999899999999999999986 No 63 >2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A* Probab=37.82 E-value=18 Score=15.17 Aligned_cols=54 Identities=22% Similarity=0.353 Sum_probs=26.1 Q ss_pred CCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHH--HHHHHHCCCCEEEHH Q ss_conf 157788677613698998754568699999999879999994276--899998899517946 Q gi|254780664|r 5 HRKDGDHGEIAVKTALISVHNKTGVVEFASRLLSRGIKIISTGGT--CQLLEEEGIPVTSVF 64 (536) Q Consensus 5 ~~~~~~~~~~~ikrALiSV~dKtgl~~la~~L~~~g~~iisTgGT--a~~l~~~gi~v~~Vs 64 (536) |.....+.+-++|-|+|+|+|. ....+...| +|.=|.|- ++.|++.|+.|.... T Consensus 5 ~~~~~~~~~~~~r~~Iitvgd~-----~~~~~~~~g-~i~D~ng~~L~~~L~~~G~~v~~~~ 60 (178) T 2pjk_A 5 HKKHKENAPKSLNFYVITISTS-----RYEKLLKKE-PIVDESGDIIKQLLIENGHKIIGYS 60 (178) T ss_dssp --------CCCCEEEEEEECHH-----HHHHHHTTC-CCCCHHHHHHHHHHHHTTCEEEEEE T ss_pred HHHHHHCCCCCCEEEEEEECCC-----CCCCCCCCC-CCCCCHHHHHHHHHHHCCCEEEEEE T ss_conf 0436743898878999998478-----876654679-8755569999999998899898987 No 64 >2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii} Probab=37.72 E-value=18 Score=15.16 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=37.2 Q ss_pred HHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHC Q ss_conf 9999997799841499994888899731765311232002334346999874015631353089998988987530 Q gi|254780664|r 97 HMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDV 172 (536) Q Consensus 97 ~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~el~~ 172 (536) -..+.+..|....=+=++---||.+.++ .--|.+++|||||-- .-+--|++-+..++.+.+ T Consensus 24 ~~kD~R~~GskK~iIN~is~i~~~e~v~--~aREAlLdNIDlG~e-------------ly~WK~eeVd~m~~k~~~ 84 (126) T 2rbg_A 24 IFLDVRSSGSKKTTINVFTEIQYQELVT--LIREALLENIDIGYE-------------LFLWKKNEVDIFLKNLEK 84 (126) T ss_dssp HHHHHHHHTCSEEEEEEECSSCHHHHHH--HTHHHHHHTTTSEEE-------------EEEECGGGHHHHHHHHTT T ss_pred HHHHHHHCCCCEEEEEEECCCCHHHHHH--HHHHHHHHCCCCCEE-------------EEEECHHHHHHHHHHHHH T ss_conf 9999985588528999854686799999--999998843454528-------------998678999999999998 No 65 >2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding, purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A Probab=36.58 E-value=19 Score=15.04 Aligned_cols=62 Identities=15% Similarity=0.221 Sum_probs=25.9 Q ss_pred HHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCC-CCCCHHHHHHHHC-CCCCCEEEECHHHHHHHHHHH Q ss_conf 9999997799841499994888899731765311232002-3343469998740-156313530899989889875 Q gi|254780664|r 97 HMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENI-DIGGPSMIRAAAK-NHDYVTILTNPQDYPLFLAEM 170 (536) Q Consensus 97 ~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnI-DIGGpsmiRAAAK-N~~~V~Vi~dp~dY~~~~~el 170 (536) -.+-++++||+.-.--++. +.+++.+.+ .||-|-+|+++.= --+.|.|+.++++....+++. T Consensus 106 ~k~~~~~~gipt~~~~~~~------------~~~ea~~~~~~~g~P~VIKp~~~~gGkGv~v~~~~~e~~~al~~~ 169 (424) T 2yw2_A 106 AKTFMKKYGIPTARYEVFT------------DFEKAKEYVEKVGAPIVVKADGLAAGKGAVVCETVEKAIETLDRF 169 (424) T ss_dssp HHHHHHHTTCCBCCEEEES------------CHHHHHHHHHHHCSSEEEEESSCCTTCSEEEESSHHHHHHHHHHH T ss_pred HHHHHHHCCCCCCCCCCCC------------CHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEHHHHHHHHHHH T ss_conf 9999998498963444556------------199999999864997899857876777738885026689999997 No 66 >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* Probab=36.47 E-value=19 Score=15.03 Aligned_cols=50 Identities=20% Similarity=0.177 Sum_probs=40.4 Q ss_pred CCCEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEH----HHHHHHHHCCCCEEE Q ss_conf 76136989987545686999999998799999942----768999988995179 Q gi|254780664|r 13 EIAVKTALISVHNKTGVVEFASRLLSRGIKIISTG----GTCQLLEEEGIPVTS 62 (536) Q Consensus 13 ~~~ikrALiSV~dKtgl~~la~~L~~~g~~iisTg----GTa~~l~~~gi~v~~ 62 (536) +-++||.++==--++|+--+|+.|.++|+++..+. -+.+.|++.||++.. T Consensus 15 ~~~~k~i~~iGiggsG~s~lA~~l~~~G~~V~~~D~~~~~~~~~L~~~gi~~~~ 68 (475) T 1p3d_A 15 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYI 68 (475) T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEE T ss_pred HHCCCEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCEEEC T ss_conf 514777999984699999999999968894999908999799999978799987 No 67 >1rh9_A Endo-beta-mannanase; endo-beta-mannase, retaining, glycoside hydrolase family 5; 1.50A {Solanum lycopersicum} SCOP: c.1.8.3 Probab=36.34 E-value=19 Score=15.02 Aligned_cols=19 Identities=0% Similarity=-0.094 Sum_probs=14.0 Q ss_pred CHHHHHHHHHCCCCCEEEE Q ss_conf 9899999997799841499 Q gi|254780664|r 94 NPAHMKFMQDHELESIDLV 112 (536) Q Consensus 94 ~~~~~~~l~~~~i~~IDlV 112 (536) .+.+.+.++++|+..|-+= T Consensus 44 ~~~~l~~~~~~G~N~vR~~ 62 (373) T 1rh9_A 44 VTNTFQQASKYKMNVARTW 62 (373) T ss_dssp HHHHHHHHHHTTCCEEEEE T ss_pred HHHHHHHHHHCCCCEEEEC T ss_conf 9999999997799399978 No 68 >1ve4_A ATP phosphoribosyltransferase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.20A {Thermus thermophilus} SCOP: c.94.1.1 Probab=35.89 E-value=10 Score=16.89 Aligned_cols=55 Identities=13% Similarity=0.199 Sum_probs=24.6 Q ss_pred HHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEE Q ss_conf 76899998899517946534881651985532371555355330889899999997799841499994 Q gi|254780664|r 48 GTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVN 115 (536) Q Consensus 48 GTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~~~~~~~~l~~~~i~~IDlVvvN 115 (536) .|.++|+++|+.+.+..+-.-++..- .|.|- ++.- ++.|+...-++|.- |+=||- T Consensus 18 ~~~~ll~~~g~~~~~~~~r~~~~~~~-------~~~i~--~~~~--r~~DIp~~V~~G~~--DlGI~G 72 (206) T 1ve4_A 18 EAYEVLKRAGLDLPEVEGERTLLHGK-------EGGVA--LLEL--RNKDVPIYVDLGIA--EIGVVG 72 (206) T ss_dssp HHHHHHHHTTCCCCCC-----CEECC-------TTSEE--EEEE--CGGGHHHHHHTTSS--SEEEEE T ss_pred HHHHHHHHCCCCCCCCCCCEEEECCC-------CCCEE--EEEE--CHHHHHHHHHCCCC--CEEECC T ss_conf 99999998799986688850573168-------89879--9997--74769999984987--520021 No 69 >2b82_A APHA, class B acid phosphatase; DDDD acid phosphatase, metallo- enzyme, AMP, hydrolase; HET: ADN; 1.25A {Escherichia coli} SCOP: c.108.1.12 PDB: 2b8j_A* 2hf7_A 1rmt_A* 1n9k_A 1rmq_A 1n8n_A* 1rmy_A* 2g1a_A* 3cz4_A 2heg_A* 1z5g_A 1z5u_A* 1z88_A 2aut_A Probab=35.64 E-value=16 Score=15.55 Aligned_cols=21 Identities=10% Similarity=0.123 Sum_probs=10.5 Q ss_pred CHHHHHHHHC--CCCCEEEECCC Q ss_conf 9899988512--45531563167 Q gi|254780664|r 350 SEEAADVLAK--KPSMRFLKTSS 370 (536) Q Consensus 350 ~~eAleiL~~--KKnlRil~~~~ 370 (536) -+.|+++|.. ++...|.-+.+ T Consensus 90 ipga~efl~~~~~~Gv~IfyITn 112 (211) T 2b82_A 90 KEVARQLIDMHVRRGDAIFFVTG 112 (211) T ss_dssp CHHHHHHHHHHHHHTCEEEEEEC T ss_pred CCCHHHHHHHHHHCCCEEEEEEC T ss_conf 62099999999976985999808 No 70 >3fuy_A HFX_CASS1, putative integron gene cassette protein; integron cassette protein, mobIle metagenome, structural genomics, PSI-2; 2.00A {Uncultured bacterium} Probab=35.16 E-value=7.1 Score=18.08 Aligned_cols=60 Identities=23% Similarity=0.328 Sum_probs=40.5 Q ss_pred CCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHC---------CCCCCCCCCEEEEECCCCCCCCH Q ss_conf 677999968938997296888899999999998764200---------12222348709997366868555 Q gi|254780664|r 430 SNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQ---------ADVKSMTNGSVIASEAFYPFPDG 491 (536) Q Consensus 430 SNAIv~ak~~~tiGiGaGQ~sRVda~~iA~~KA~~~~~~---------~~~~~~~~g~vlaSDAFFPF~D~ 491 (536) -||.|++. -+||-|+...-|--+-++|-+|....-.- ...+-+++.-.+.||.|-|=.|- T Consensus 105 ynamvyvd--livgtgaseveretaeelakeklraalqvdiadehscvtqfemklreellssdsfhpdkde 173 (179) T 3fuy_A 105 YNAMVYVD--LIVGTGASEVERETAEELAKEKLRAALQVDIADEHSCVTQFEMKLREELLSSDSFHPDKDE 173 (179) T ss_dssp CEEEEEEE--EEEETTCCHHHHHHHHHHHHHHHHHHTTBTSBCTTSCEEEEEEEEEEECTTCTTCCTTCGG T ss_pred EEEEEEEE--EEEECCHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHH T ss_conf 11589999--9860681377588799999999988752160443017889999999997415676887467 No 71 >2f46_A Hypothetical protein; 7380613, DUF442, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.41A {Neisseria meningitidis Z2491} Probab=34.93 E-value=20 Score=14.86 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=9.8 Q ss_pred HHEECCCCHHHHHHHHCCCCCE Q ss_conf 1112687989998851245531 Q gi|254780664|r 343 AIIAPTLSEEAADVLAKKPSMR 364 (536) Q Consensus 343 vIiAP~f~~eAleiL~~KKnlR 364 (536) +-+++-.+++-++.|+.. ++| T Consensus 24 l~~s~qp~~~~~~~L~~~-Gik 44 (156) T 2f46_A 24 LYISPQLTKADAEQIAQL-GIK 44 (156) T ss_dssp EEEESCCCGGGHHHHHHH-TCC T ss_pred EEECCCCCHHHHHHHHHC-CCC T ss_conf 267189899999999986-997 No 72 >1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Probab=34.91 E-value=16 Score=15.61 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=21.9 Q ss_pred HHEECCCCHHHHHHHH---CCCCCEEEECCC Q ss_conf 1112687989998851---245531563167 Q gi|254780664|r 343 AIIAPTLSEEAADVLA---KKPSMRFLKTSS 370 (536) Q Consensus 343 vIiAP~f~~eAleiL~---~KKnlRil~~~~ 370 (536) +|||.+++++||..|- .|.++++..++. T Consensus 57 lIIAedi~~eaL~~Lv~N~~~g~l~v~aVka 87 (145) T 1srv_A 57 LIIAEDVEGEALATLVVNKLRGTLSVAAVKA 87 (145) T ss_dssp EEEESEECHHHHHHHHHHHHTTSCCEEEEEC T ss_pred EEEECCCCHHHHHHHHHHHHHCCCEEEEEEC T ss_conf 9995766789999999998608817999939 No 73 >2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities, enzyme evolution, hyperthermophilic, lactonase, hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus solfataricus} PDB: 2vc5_A* Probab=34.90 E-value=20 Score=14.86 Aligned_cols=10 Identities=0% Similarity=0.212 Sum_probs=4.4 Q ss_pred CCCHHHHHHH Q ss_conf 7868898889 Q gi|254780664|r 409 SPTDQELRDM 418 (536) Q Consensus 409 ~pt~~e~~dL 418 (536) ..+++++..+ T Consensus 295 Gis~e~i~~i 304 (314) T 2vc7_A 295 GVNEEVIATI 304 (314) T ss_dssp TCCHHHHHHH T ss_pred CCCHHHHHHH T ss_conf 9999999999 No 74 >2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens} Probab=32.87 E-value=11 Score=16.62 Aligned_cols=29 Identities=24% Similarity=-0.007 Sum_probs=18.1 Q ss_pred HHHHHCCCCCCEEE-ECHHHHHHHHHHHHC Q ss_conf 99874015631353-089998988987530 Q gi|254780664|r 144 IRAAAKNHDYVTIL-TNPQDYPLFLAEMDV 172 (536) Q Consensus 144 iRAAAKN~~~V~Vi-~dp~dY~~~~~el~~ 172 (536) -||-..+-.++.++ +||+++..+++-.+. T Consensus 34 ~rA~~~GV~~ii~~g~~~~~~~~~~~la~~ 63 (301) T 2xio_A 34 GRAVEIGVKKFMITGGNLQDSKDALHLAQT 63 (301) T ss_dssp HHHHHHTEEEEEECCCSHHHHHHHHHHHTT T ss_pred HHHHHCCCCEEEEECCCHHHHHHHHHHHHH T ss_conf 999984998899964899999999999842 No 75 >3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* Probab=32.50 E-value=21 Score=14.59 Aligned_cols=78 Identities=19% Similarity=0.323 Sum_probs=41.6 Q ss_pred CCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEE-- Q ss_conf 237155535533088989999999779984149999488889973176531123200233434699987401563135-- Q gi|254780664|r 79 TLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTI-- 156 (536) Q Consensus 79 TLHP~I~ggIL~~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~V-- 156 (536) .+.|.++.+ ..-.++|...|+++||.. ||||=|..+.-... ++.+. +++.-=+|-++.| T Consensus 17 ~~~p~l~~s---gqP~~~dl~~L~~~Gikt----VInLr~~~e~~~~~-~e~~~-----------~~~~Gi~~~~iPv~~ 77 (157) T 3gxh_A 17 QQAPQLLSS---GLPNEQQFSLLKQAGVDV----VINLMPDSSKDAHP-DEGKL-----------VTQAGMDYVYIPVDW 77 (157) T ss_dssp EEETTEEEE---BCCCHHHHHHHHHTTCCE----EEECSCTTSTTSCT-THHHH-----------HHHTTCEEEECCCCT T ss_pred HHCCCCEEC---CCCCHHHHHHHHHCCCCE----EEECCCCCCCCCCC-CHHHH-----------HHHCCCCEEECCCCC T ss_conf 728442125---898999999999869989----99898766456652-58899-----------997297047578866 Q ss_pred -EECHHHHHHHHHHHHCCCC Q ss_conf -3089998988987530234 Q gi|254780664|r 157 -LTNPQDYPLFLAEMDVNNG 175 (536) Q Consensus 157 -i~dp~dY~~~~~el~~~~g 175 (536) -..+++...++..+....| T Consensus 78 ~~p~~e~v~~~~~~i~~~~~ 97 (157) T 3gxh_A 78 QNPKVEDVEAFFAAMDQHKG 97 (157) T ss_dssp TSCCHHHHHHHHHHHHHTTT T ss_pred CCCCHHHHHHHHHHHHHCCC T ss_conf 79599999999999986369 No 76 >1zpv_A ACT domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Streptococcus pneumoniae TIGR4} SCOP: d.58.18.7 Probab=32.16 E-value=22 Score=14.55 Aligned_cols=30 Identities=27% Similarity=0.512 Sum_probs=23.4 Q ss_pred EEEEEEE--CCCCHH-HHHHHHHHCCCEEEEEH Q ss_conf 9899875--456869-99999998799999942 Q gi|254780664|r 18 TALISVH--NKTGVV-EFASRLLSRGIKIISTG 47 (536) Q Consensus 18 rALiSV~--dKtgl~-~la~~L~~~g~~iisTg 47 (536) |+.|+|+ ||.||+ .+++.|.+.|..|.... T Consensus 5 k~vitv~g~DrpGIva~vt~~L~~~g~NI~d~~ 37 (91) T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDIS 37 (91) T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEE T ss_pred EEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEE T ss_conf 899999908978789999999998799499845 No 77 >1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porphyria, structural genomics, riken structural genomics/proteomics initiative; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A Probab=31.92 E-value=22 Score=14.53 Aligned_cols=70 Identities=13% Similarity=0.028 Sum_probs=42.9 Q ss_pred HHHHCCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHH Q ss_conf 55330889899999997799841499994888899731765311232002334346999874015631353089998988 Q gi|254780664|r 87 GILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLF 166 (536) Q Consensus 87 gIL~~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~ 166 (536) +|++-|..++-...++++|..+|-+=+.-.-| -+. ++. ..-+++....|.| .|.|+++--..+ T Consensus 12 ~~~~~r~~e~~~~lle~~G~~pi~~P~i~i~~------~p~--~~~--------~~~~~~~~~~~D~-vifTS~n~V~~~ 74 (261) T 1wcw_A 12 AYAGLRRKEAFKALAEKLGFTPLLFPVQATEK------VPV--PEY--------RDQVRALAQGVDL-FLATTGVGVRDL 74 (261) T ss_dssp EECCSTTHHHHHHHHHHTTCEEEECCCEEEEE------CCG--GGG--------HHHHHHHHTCCSE-EEECCHHHHHHH T ss_pred EECCHHHHHHHHHHHHHCCCEEEECCHHHEEC------CCC--HHH--------HHHHHHHCCCCCE-EEEECHHHHHHH T ss_conf 86132328999999997799499805466265------892--145--------7899973279999-999798999999 Q ss_pred HHHHHCC Q ss_conf 9875302 Q gi|254780664|r 167 LAEMDVN 173 (536) Q Consensus 167 ~~el~~~ 173 (536) ++.+..- T Consensus 75 ~~~l~~~ 81 (261) T 1wcw_A 75 LEAGKAL 81 (261) T ss_dssp HHHHHHT T ss_pred HHHHHHC T ss_conf 9999873 No 78 >1vff_A Beta-glucosidase; glycosyl hydrolase, membrane-bound enzyme, thermostability, TIM barrel, alkylglucosides; 2.50A {Pyrococcus horikoshii} SCOP: c.1.8.4 Probab=31.86 E-value=14 Score=15.88 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=10.5 Q ss_pred HHHHHHHCCCCCEEEEEECCE Q ss_conf 999986005667799996893 Q gi|254780664|r 420 FAFKVVKHVKSNAVVYAKDGR 440 (536) Q Consensus 420 FA~kv~K~vkSNAIv~ak~~~ 440 (536) .+++....- -+-|.+.-||. T Consensus 308 ~~~~~~~~y-~~Pi~ITENG~ 327 (423) T 1vff_A 308 MALKKASRY-GRPLYITENGI 327 (423) T ss_dssp HHHHHHGGG-CSCEEEEECCC T ss_pred HHHHHHCCC-CCCEEEECCCC T ss_conf 443111136-88558854887 No 79 >1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A* Probab=31.80 E-value=22 Score=14.51 Aligned_cols=39 Identities=13% Similarity=0.296 Sum_probs=15.6 Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHEECCCCH----HHHHHHHC Q ss_conf 45554275421457878865431111268798----99988512 Q gi|254780664|r 320 GIIAFNREVDQEVAKEVIKVFTEAIIAPTLSE----EAADVLAK 359 (536) Q Consensus 320 GIIa~N~~vd~~~A~~I~~~F~EvIiAP~f~~----eAleiL~~ 359 (536) .++-+...++.+....+-.. .+|.+-|+..+ -++|-+.. T Consensus 332 ~~v~~~~~~~~~~l~~ly~~-aDv~v~~S~~Eg~~Lv~~Eama~ 374 (482) T 1uqt_A 332 PLYYLNQHFDRKLLMKIFRY-SDVGLVTPLRDGMNLVAKEYVAA 374 (482) T ss_dssp SEEEECSCCCHHHHHHHHHH-CSEEEECCSSBSCCHHHHHHHHH T ss_pred CEEECCCCCCHHHHHHHCCC-CEEEEECCCCCCCCCHHHHHHHC T ss_conf 53521588888898764060-45999577425788589999982 No 80 >3ke8_A 4-hydroxy-3-methylbut-2-ENYL diphosphate reductase; induced FIT mechanism, FS4-iron-sulfure-cluster, 3Fe-4S, iron, iron-sulfur; HET: EIP; 1.70A {Escherichia coli} PDB: 3ke9_A* 3kef_A* 3kel_A 3kem_A* 3f7t_A Probab=31.74 E-value=12 Score=16.51 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=25.7 Q ss_pred HCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEE Q ss_conf 519855323715553553308898999999977998414 Q gi|254780664|r 72 IMGGRVKTLHPKIYGGILSIRDNPAHMKFMQDHELESID 110 (536) Q Consensus 72 il~GRVKTLHP~I~ggIL~~r~~~~~~~~l~~~~i~~ID 110 (536) -.|.+|-||||-|| |+.-++.|++.|+..++ T Consensus 38 ~~~~~vy~lG~iVH--------N~~vv~~L~~~Gv~~v~ 68 (326) T 3ke8_A 38 IYGAPIYVRHEVVH--------NRYVVDSLRERGAIFIE 68 (326) T ss_dssp HHCSCEEEESCSSS--------CHHHHHHHHHHTEEEES T ss_pred HHCCCEEECCCCCC--------CHHHHHHHHHCCCEECC T ss_conf 71997877785755--------98999999988799805 No 81 >1u83_A Phosphosulfolactate synthase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, lyase; 2.20A {Bacillus subtilis} SCOP: c.1.27.1 Probab=31.10 E-value=23 Score=14.43 Aligned_cols=33 Identities=24% Similarity=0.126 Sum_probs=13.2 Q ss_pred EECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCE Q ss_conf 9615686565452016899999985332132004 Q gi|254780664|r 287 IVKHMNPCGVATADTLVEAYRRALSCDPISAFGG 320 (536) Q Consensus 287 IvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGG 320 (536) ++|=+-++ .+.-+.+.+=...+...|=.-.+|| T Consensus 68 ~vKfg~GT-s~l~~~L~eKI~l~~~~~V~v~~GG 100 (276) T 1u83_A 68 FVKFGWGT-SLLTKDLEEKISTLKEHDITFFFGG 100 (276) T ss_dssp EEEECTTG-GGGCTTHHHHHHHHHHTTCEEEECH T ss_pred EEEECCCE-ECCCHHHHHHHHHHHHCCCEEECCC T ss_conf 88854853-3126899999999998699697896 No 82 >2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4 Probab=30.91 E-value=23 Score=14.41 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=46.5 Q ss_pred CCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHH---------------HHHHHHHCCCCEEEHHHHCC Q ss_conf 015778867761369899875456869999999987999999427---------------68999988995179465348 Q gi|254780664|r 4 FHRKDGDHGEIAVKTALISVHNKTGVVEFASRLLSRGIKIISTGG---------------TCQLLEEEGIPVTSVFDITK 68 (536) Q Consensus 4 ~~~~~~~~~~~~ikrALiSV~dKtgl~~la~~L~~~g~~iisTgG---------------Ta~~l~~~gi~v~~Vs~~Tg 68 (536) .|+..|+..++||--+.-|+.+...+++..+...+.||+=|--.+ -.+.|.+.||.+..++-..+ T Consensus 13 ~t~~~~~~~~~~i~~~~~tl~~~~~lee~l~~aae~GfdgVEl~~~~~~~~~~~~~~~~~l~~~l~~~GL~i~~i~~~~~ 92 (296) T 2g0w_A 13 MTNANGNLKKCPITISSYTLGTEVSFPKRVKVAAENGFDGIGLRAENYVDALAAGLTDEDMLRILDEHNMKVTEVEYITQ 92 (296) T ss_dssp ---------CCCEEECGGGGTTTSCHHHHHHHHHHTTCSEEEEEHHHHHHHHHTTCCHHHHHHHHHHTTCEEEEEECBCC T ss_pred HHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCC T ss_conf 32466874778847888887899999999999999697999974532300044689999999999971997999865545 Q ss_pred CC Q ss_conf 81 Q gi|254780664|r 69 FP 70 (536) Q Consensus 69 fp 70 (536) +. T Consensus 93 ~~ 94 (296) T 2g0w_A 93 WG 94 (296) T ss_dssp CS T ss_pred CC T ss_conf 57 No 83 >3jyv_I 40S ribosomal protein S16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_I Probab=30.55 E-value=23 Score=14.37 Aligned_cols=21 Identities=33% Similarity=0.343 Sum_probs=18.3 Q ss_pred ECCCCCCHHHHHHHHHHHHHH Q ss_conf 729688889999999999876 Q gi|254780664|r 444 IGSGQTSRVDSTRFAAIKAHN 464 (536) Q Consensus 444 iGaGQ~sRVda~~iA~~KA~~ 464 (536) -|.|.++..+|+++|+.||-. T Consensus 65 ~GGG~sgQa~AirlaiaRaLv 85 (138) T 3jyv_I 65 TGGGHVSQVYAIRQAIAKGLV 85 (138) T ss_dssp ESCCTTTHHHHHHHHHHHTTT T ss_pred ECCCHHHHHHHHHHHHHHHHH T ss_conf 657564898699999999999 No 84 >1o63_A ATP phosphoribosyltransferase; structural genomics; 2.00A {Thermotoga maritima} SCOP: c.94.1.1 PDB: 1o64_A 1usy_E* 1usy_H* Probab=30.45 E-value=12 Score=16.31 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=14.0 Q ss_pred HEECCCCHHHHHHHHCC-CCCEEEECCC Q ss_conf 11268798999885124-5531563167 Q gi|254780664|r 344 IIAPTLSEEAADVLAKK-PSMRFLKTSS 370 (536) Q Consensus 344 IiAP~f~~eAleiL~~K-KnlRil~~~~ 370 (536) -||-.|-.-+-+.|.++ -+.+++.+.. T Consensus 105 rIATkYpnit~~ff~~~gi~~~ii~l~G 132 (219) T 1o63_A 105 RIATKFPNVTQRYCESKGWHCRIIPLKG 132 (219) T ss_dssp EEEESCHHHHHHHHHHHTCCEEEEECSS T ss_pred EEEEHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 6532214499999998399348997569 No 85 >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 Probab=30.00 E-value=14 Score=15.92 Aligned_cols=85 Identities=16% Similarity=0.146 Sum_probs=50.1 Q ss_pred CCCCEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHC Q ss_conf 77613698998754568699999999879999994276899998899517946534881651985532371555355330 Q gi|254780664|r 12 GEIAVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSI 91 (536) Q Consensus 12 ~~~~ikrALiSV~dKtgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~ 91 (536) ++++=|.|||.=.-+-==..+|+.|.+.|++++-++-....+++. +++ +++++..++ ++ T Consensus 2 nrL~gKvalITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~------~~~-------l~~~~~~~~--------~D 60 (253) T 1hxh_A 2 NRLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQL------AAE-------LGERSMFVR--------HD 60 (253) T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH------HHH-------HCTTEEEEC--------CC T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH------HHH-------HCCCEEEEE--------EC T ss_conf 988998899948887899999999998799999997999999999------998-------389659998--------01 Q ss_pred CCCHHHHHHHHH---CCCCCEEEEEEECC Q ss_conf 889899999997---79984149999488 Q gi|254780664|r 92 RDNPAHMKFMQD---HELESIDLVVVNLY 117 (536) Q Consensus 92 r~~~~~~~~l~~---~~i~~IDlVvvNLY 117 (536) -.++++.+.+-+ ....+||++|.|-. T Consensus 61 vt~~~~~~~~~~~~~~~~g~iDilVnnag 89 (253) T 1hxh_A 61 VSSEADWTLVMAAVQRRLGTLNVLVNNAG 89 (253) T ss_dssp TTCHHHHHHHHHHHHHHHCSCCEEEECCC T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEECCC T ss_conf 79999999999999998199788998885 No 86 >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- MESO-diaminopimelate ligase; structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis MC58} Probab=29.75 E-value=24 Score=14.28 Aligned_cols=47 Identities=23% Similarity=0.138 Sum_probs=33.5 Q ss_pred CEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHH-----HHHHHHHCCCCEE Q ss_conf 1369899875456869999999987999999427-----6899998899517 Q gi|254780664|r 15 AVKTALISVHNKTGVVEFASRLLSRGIKIISTGG-----TCQLLEEEGIPVT 61 (536) Q Consensus 15 ~ikrALiSV~dKtgl~~la~~L~~~g~~iisTgG-----Ta~~l~~~gi~v~ 61 (536) +||+..+-=--.+|+--+|+.|.++|+++..+.. +.+.|++.|+++. T Consensus 3 ~~k~ih~iGigg~Gms~lA~~L~~~G~~V~gsD~~~~~~~~~~L~~~Gi~v~ 54 (326) T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVY 54 (326) T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEE T ss_pred CCCEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCEEE T ss_conf 7778999985888999999999978992999979999678999997889998 No 87 >3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.07A {Escherichia coli K12} Probab=29.56 E-value=24 Score=14.25 Aligned_cols=10 Identities=20% Similarity=0.126 Sum_probs=4.4 Q ss_pred HHHHHCCCCE Q ss_conf 9999719959 Q gi|254780664|r 493 VEAIKAGVTA 502 (536) Q Consensus 493 e~aa~~Gi~a 502 (536) |.+.++|+.. T Consensus 442 ~~~~~~~~~~ 451 (480) T 3dmy_A 442 LELQSASKPV 451 (480) T ss_dssp HHHHHTTCCE T ss_pred HHHHHHCCCE T ss_conf 9999829986 No 88 >1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A Probab=29.35 E-value=24 Score=14.23 Aligned_cols=55 Identities=20% Similarity=0.408 Sum_probs=39.5 Q ss_pred CCCCCCCEEEEEE--EEECCCC------HHHHHHHHHHCCCEEEEEHHH-------HHHHHHCCCCEEEH Q ss_conf 8867761369899--8754568------699999999879999994276-------89999889951794 Q gi|254780664|r 9 GDHGEIAVKTALI--SVHNKTG------VVEFASRLLSRGIKIISTGGT-------CQLLEEEGIPVTSV 63 (536) Q Consensus 9 ~~~~~~~ikrALi--SV~dKtg------l~~la~~L~~~g~~iisTgGT-------a~~l~~~gi~v~~V 63 (536) .++.+.|||+.-| |-+.+.+ -.+|++.|.+.|++++-.||. ++-..++|=.|+-| T Consensus 2 ~~~~~~k~k~V~VF~gS~~~~~~~~~~~a~~lG~~La~~g~~lV~GGG~~GlMgava~ga~~~gG~viGV 71 (216) T 1ydh_A 2 EDNQRSRFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGGLHVLGI 71 (216) T ss_dssp ---CCCSCSEEEEECCSCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCSSHHHHHHHHHHHHTTCCEEEE T ss_pred CCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEE T ss_conf 6430056853999875789969389999999999999879949989981899999998787479955763 No 89 >1g2q_A Adenine phosphoribosyltransferase 1; dimer, single domain, catalytic loop; 1.50A {Saccharomyces cerevisiae} SCOP: c.61.1.1 PDB: 1g2p_A Probab=28.88 E-value=21 Score=14.67 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=14.5 Q ss_pred CCCCC-EEEECHHHHHHHHHHHH Q ss_conf 15631-35308999898898753 Q gi|254780664|r 150 NHDYV-TILTNPQDYPLFLAEMD 171 (536) Q Consensus 150 N~~~V-~Vi~dp~dY~~~~~el~ 171 (536) +|+++ .++.||.-+..+++.|. T Consensus 26 ~f~Dit~ll~dp~~~~~i~~~la 48 (187) T 1g2q_A 26 LFEDFLPIFRNPGLFQKLIDAFK 48 (187) T ss_dssp CEEECHHHHHSHHHHHHHHHHHH T ss_pred EEEECCHHHCCHHHHHHHHHHHH T ss_conf 17708246549999999999999 No 90 >3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, structural genomics; HET: 5RP; 2.30A {Bartonella henselae str} Probab=28.71 E-value=25 Score=14.15 Aligned_cols=15 Identities=7% Similarity=0.144 Sum_probs=5.9 Q ss_pred HHHCCCCCCEEEECH Q ss_conf 874015631353089 Q gi|254780664|r 146 AAAKNHDYVTILTNP 160 (536) Q Consensus 146 AAAKN~~~V~Vi~dp 160 (536) ..|.+-+.+.+|+|. T Consensus 128 ~~a~~A~~~IviaD~ 142 (255) T 3hhe_A 128 IVASASRAMFVIADE 142 (255) T ss_dssp HHHHTBSCEEEEEEG T ss_pred HHHHHCCCEEEEECH T ss_conf 999735113687332 No 91 >2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} Probab=28.53 E-value=25 Score=14.13 Aligned_cols=102 Identities=11% Similarity=0.083 Sum_probs=51.6 Q ss_pred EEEEE-EEECC---CCHHHHHHHHHHCCCEE--EEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHH Q ss_conf 69899-87545---68699999999879999--99427689999889951794653488165198553237155535533 Q gi|254780664|r 17 KTALI-SVHNK---TGVVEFASRLLSRGIKI--ISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILS 90 (536) Q Consensus 17 krALi-SV~dK---tgl~~la~~L~~~g~~i--isTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~ 90 (536) +|.|+ +..-. .-...+|+.|.+.|.++ ++++.-...++..|+++..+...........+.....-.......+. T Consensus 13 ~~ilf~~~p~~GHv~p~l~la~~L~~rGH~V~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (424) T 2iya_A 13 RHISFFNIPGHGHVNPSLGIVQELVARGHRVSYAITDEFAAQVKAAGATPVVYDSILPKESNPEESWPEDQESAMGLFLD 92 (424) T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCEEEECCCCSCCTTCTTCCCCSSHHHHHHHHHH T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 84999778716379999999999998889899996841677787669825740776652223211251457899999999 Q ss_pred CCCCHHHHHHHHHCCCCCEEEEEEECCCH Q ss_conf 08898999999977998414999948888 Q gi|254780664|r 91 IRDNPAHMKFMQDHELESIDLVVVNLYPF 119 (536) Q Consensus 91 ~r~~~~~~~~l~~~~i~~IDlVvvNLYPF 119 (536) +-...-....+.+.=...|+|+++.+.. T Consensus 93 -~~~~~~~~~~~~~~~~~pDvvi~~~~~~ 120 (424) T 2iya_A 93 -EAVRVLPQLEDAYADDRPDLIVYDIASW 120 (424) T ss_dssp -HHHHHHHHHHHHTTTSCCSEEEEETTCT T ss_pred -HHHHHHHHHHHHHHCCCCCEEEECCCCH T ss_conf -9999999999998355996898255455 No 92 >1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1 Probab=28.28 E-value=18 Score=15.20 Aligned_cols=20 Identities=30% Similarity=0.642 Sum_probs=13.8 Q ss_pred CCCCCCCCCCCCCCCCEEEE Q ss_conf 23333436788100650576 Q gi|254780664|r 221 VKKQEMRYGENPHQKAALYS 240 (536) Q Consensus 221 ~~~~~LRYGENPHQ~Aa~Y~ 240 (536) .+-.+=||||||.---.+|+ T Consensus 69 rRP~DgRYGeNPNRLq~y~Q 88 (298) T 1j5w_A 69 RRPTDGRYGENPNRLQRYFQ 88 (298) T ss_dssp ECCC-----CCTTCCSEEEE T ss_pred CCCCCCCCCCCCCHHCEEEE T ss_conf 79998876789323110034 No 93 >3ju2_A Uncharacterized protein SMC04130; structural genomics, PSI-2, TIM barrel protein, protein structure initiative, Zn binding domain; 1.80A {Sinorhizobium meliloti} Probab=27.80 E-value=26 Score=14.04 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=12.8 Q ss_pred ECCCCHHHHHHHHHHCCCEEEE Q ss_conf 5456869999999987999999 Q gi|254780664|r 24 HNKTGVVEFASRLLSRGIKIIS 45 (536) Q Consensus 24 ~dKtgl~~la~~L~~~g~~iis 45 (536) .+..++++....+.+.|++=|- T Consensus 16 ~~~~~l~e~l~~~a~~G~~~IE 37 (284) T 3ju2_A 16 REQCGFAEAVDICLKHGITAIA 37 (284) T ss_dssp TTTCCHHHHHHHHHHTTCCEEE T ss_pred CCCCCHHHHHHHHHHHCCCEEE T ss_conf 5899999999999981999899 No 94 >3kg2_A Glutamate receptor 2; ION channel, membrane protein, alternative splicing, cell membrane, glycoprotein, ION transport, membrane; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Probab=27.79 E-value=26 Score=14.04 Aligned_cols=88 Identities=13% Similarity=0.098 Sum_probs=41.0 Q ss_pred EEEEEECCCCHHHHHHHHHHCCCE-EEE--EHHHH----HHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHC Q ss_conf 899875456869999999987999-999--42768----99998899517946534881651985532371555355330 Q gi|254780664|r 19 ALISVHNKTGVVEFASRLLSRGIK-IIS--TGGTC----QLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSI 91 (536) Q Consensus 19 ALiSV~dKtgl~~la~~L~~~g~~-iis--TgGTa----~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~ 91 (536) -.+...|-.....-+..|.+.|+. ||. +.+++ .+..+.+||+...+--+. . ...-+=.+.|-.... T Consensus 39 ~~~~~~d~~~~~~~~~~l~~~gV~aiiGp~~s~~~~~v~~~~~~~~iP~is~s~~~~-~--~~~~~~r~~p~~~~a---- 111 (823) T 3kg2_A 39 DNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTD-G--THPFVIQMRPDLKGA---- 111 (823) T ss_dssp EEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECSCCCS-S--CCSSEEECSCCCHHH---- T ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCC-C--CCCEEEEECCCHHHH---- T ss_conf 997089989999999999866987999899718999999999867981998453789-8--896699958289999---- Q ss_pred CCCHHHHHHHHHCCCCCEEEEEEECCC Q ss_conf 889899999997799841499994888 Q gi|254780664|r 92 RDNPAHMKFMQDHELESIDLVVVNLYP 118 (536) Q Consensus 92 r~~~~~~~~l~~~~i~~IDlVvvNLYP 118 (536) =.+-++.+|+..+-++.-|=|- T Consensus 112 -----i~~ll~~~~W~~vaiiyd~~~g 133 (823) T 3kg2_A 112 -----LLSLIEYYQWDKFAYLYDSDRG 133 (823) T ss_dssp -----HHHHHHHTTCSEEEEEECGGGC T ss_pred -----HHHHHHHCCCCEEEEEEECCHH T ss_conf -----9999998799899999979553 No 95 >1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 1.63A {Escherichia coli} SCOP: c.1.15.5 Probab=27.56 E-value=26 Score=14.01 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=8.1 Q ss_pred CCCCCCCHHHHHHHHCC Q ss_conf 12221200116776424 Q gi|254780664|r 262 NNINDLDAAFELVSEFR 278 (536) Q Consensus 262 NNllD~daA~~lv~ef~ 278 (536) ..+.+.+.+++++.+.. T Consensus 153 ~~~~~~~~~~~l~~~~~ 169 (260) T 1k77_A 153 YLFSSQYQALAIVEEVA 169 (260) T ss_dssp BSCCSHHHHHHHHHHHC T ss_pred CCCCCHHHHHHHHHHCC T ss_conf 24588999999999608 No 96 >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus HB8} SCOP: c.1.2.4 PDB: 1wxj_A* Probab=27.45 E-value=26 Score=14.00 Aligned_cols=18 Identities=6% Similarity=0.028 Sum_probs=7.9 Q ss_pred CCHHHHHHHHCCCCCCCEEE Q ss_conf 20011677642455672799 Q gi|254780664|r 267 LDAAFELVSEFRSQDCAACV 286 (536) Q Consensus 267 ~daA~~lv~ef~~~~~Pa~v 286 (536) +..-++.+++.. +.|-|+ T Consensus 190 ~~~~i~~ik~~t--~~Pv~v 207 (271) T 1ujp_A 190 VKDLVRRIKART--ALPVAV 207 (271) T ss_dssp CHHHHHHHHTTC--CSCEEE T ss_pred HHHHHHHHHCCC--CCCEEE T ss_conf 899998751056--897599 No 97 >3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductase; trilobal strucure, open alpha/beta, 3Fe-4S, iron, iron- sulfur; 1.65A {Aquifex aeolicus} Probab=27.32 E-value=16 Score=15.57 Aligned_cols=30 Identities=27% Similarity=0.363 Sum_probs=24.0 Q ss_pred CCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEE Q ss_conf 19855323715553553308898999999977998414 Q gi|254780664|r 73 MGGRVKTLHPKIYGGILSIRDNPAHMKFMQDHELESID 110 (536) Q Consensus 73 l~GRVKTLHP~I~ggIL~~r~~~~~~~~l~~~~i~~ID 110 (536) -+++|-||||-|| |+.-++.|++.|+..+| T Consensus 30 ~~~~vy~lG~iVH--------N~~vv~~L~~~GV~~~~ 59 (297) T 3dnf_A 30 SQGKVYTLGPIIH--------NPQEVNRLKNLGVFPSQ 59 (297) T ss_dssp CCSCEEESSCSSS--------CHHHHHHHHHHTEEECC T ss_pred CCCCEEEECCCCC--------CHHHHHHHHHCCCEECC T ss_conf 5997898588868--------98999999968998754 No 98 >2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A Probab=27.27 E-value=26 Score=13.98 Aligned_cols=110 Identities=18% Similarity=0.257 Sum_probs=60.9 Q ss_pred HCCCCCEEEEEECCE-------------------EEEECCCCCCHHHHHHHHHHHHHHH----HHCCCC---------CC Q ss_conf 005667799996893-------------------8997296888899999999998764----200122---------22 Q gi|254780664|r 426 KHVKSNAVVYAKDGR-------------------TVGIGSGQTSRVDSTRFAAIKAHNI----SAQADV---------KS 473 (536) Q Consensus 426 K~vkSNAIv~ak~~~-------------------tiGiGaGQ~sRVda~~iA~~KA~~~----~~~~~~---------~~ 473 (536) +.-+-=-|.++|=|+ -|=+|.|.++=-++++.|.+.--.. ..+... .- T Consensus 600 ~~GrrPrillakmG~dgH~~ga~~iA~~F~d~GfeV~~~~~f~TpeE~a~aA~e~~a~vvgics~d~~h~~lvp~l~~~L 679 (762) T 2xij_A 600 REGRRPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDADVHAVGVSTLAAGHKTLVPELIKEL 679 (762) T ss_dssp HHSSCCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHHH T ss_pred HHCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH T ss_conf 82999759996578774410199999999857902852787789999999999769999999268765688999999999 Q ss_pred CCCC---EEEEECCCCCCCCHHHHHHHCCCCEEEECCCCCCHH--HH---HHHHHHC-----CCEEEECCCCCCCC Q ss_conf 3487---099973668685558999971995999389877988--99---9999875-----97799747854479 Q gi|254780664|r 474 MTNG---SVIASEAFYPFPDGIVEAIKAGVTAVIQPGGSVRDS--EA---ITVADQH-----GIAMVFTGIRHFRH 536 (536) Q Consensus 474 ~~~g---~vlaSDAFFPF~D~ie~aa~~Gi~aIiqPGGSirD~--ev---I~aan~~-----gi~m~fTg~RhF~H 536 (536) +..| ..+.=-+-.| ++-.+.+.++||.+|+-||-+|.|. +| |+.+-+. .-++||....|-+| T Consensus 680 k~~g~~~i~VvvgGviP-~~d~~~l~~aGV~~if~pg~~i~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (762) T 2xij_A 680 NSLGRPDILVMCGGVIP-PQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDIEKCLEKKQQSVAENLYFQSHHHHHH 754 (762) T ss_dssp HHTTCTTSEEEEEESCC-GGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHHHHHHHC------------------- T ss_pred HHCCCCCCEEEEECCCC-HHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 96699986799807788-7889999986988783999829999999999999999888988876111220233334 No 99 >2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2; phosphorylation, nucleotide biosynthesis, transferase; 2.55A {Homo sapiens} PDB: 2c4k_A* Probab=26.98 E-value=23 Score=14.31 Aligned_cols=64 Identities=16% Similarity=0.099 Sum_probs=35.5 Q ss_pred HCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCEEEE Q ss_conf 00566779999689389972968888999999999987642001222234870999736686855589999719959993 Q gi|254780664|r 426 KHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQADVKSMTNGSVIASEAFYPFPDGIVEAIKAGVTAVIQ 505 (536) Q Consensus 426 K~vkSNAIv~ak~~~tiGiGaGQ~sRVda~~iA~~KA~~~~~~~~~~~~~~g~vlaSDAFFPF~D~ie~aa~~Gi~aIiq 505 (536) --||---++++.|- |.+|.| .--|++..++.+.. +-.++++-+.|. .|.++.+.+.+|.-|+- T Consensus 268 GDVkGk~vIIVDDi----IdTGgT-----l~~aa~~Lk~~GA~-------~V~~~~THgvfs-~~A~~~l~~s~i~~Iv~ 330 (379) T 2ji4_A 268 GDVGGRIAIIVDDI----IDDVDS-----FLAAAETLKERGAY-------KIFVMATHGLLS-SDAPRRIEESAIDEVVV 330 (379) T ss_dssp SCCTTSEEEEEEEE----ECSCHH-----HHHHHHHHHHTTCC-------EEEEEEEEECCC-TTHHHHHHHSSCCEEEE T ss_pred ECEEEEEEEEECCH----HHHHHH-----HHHHHHHHHHCCCC-------EEEEEEECCCCC-CHHHHHHHHCCCCEEEE T ss_conf 01200389995434----331266-----99999999976998-------379999797688-16999997289998998 Q ss_pred C Q ss_conf 8 Q gi|254780664|r 506 P 506 (536) Q Consensus 506 P 506 (536) - T Consensus 331 T 331 (379) T 2ji4_A 331 T 331 (379) T ss_dssp E T ss_pred C T ss_conf 6 No 100 >1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A Probab=26.88 E-value=26 Score=13.93 Aligned_cols=22 Identities=9% Similarity=-0.037 Sum_probs=13.8 Q ss_pred EECCCCHHHHHHHHHHCCCEEE Q ss_conf 7545686999999998799999 Q gi|254780664|r 23 VHNKTGVVEFASRLLSRGIKII 44 (536) Q Consensus 23 V~dKtgl~~la~~L~~~g~~ii 44 (536) .+.+..|.+-.....+.|++-| T Consensus 10 ~~~~~~l~~~l~~aa~~G~~~i 31 (278) T 1i60_A 10 TLENSNLKLDLELCEKHGYDYI 31 (278) T ss_dssp GTTTCCHHHHHHHHHHTTCSEE T ss_pred HCCCCCHHHHHHHHHHHCCCEE T ss_conf 3799999999999999597999 No 101 >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} Probab=26.59 E-value=21 Score=14.62 Aligned_cols=22 Identities=9% Similarity=0.185 Sum_probs=9.0 Q ss_pred HHHHHCCCCCCCEEEEECCCCC Q ss_conf 6776424556727999615686 Q gi|254780664|r 272 ELVSEFRSQDCAACVIVKHMNP 293 (536) Q Consensus 272 ~lv~ef~~~~~Pa~vIvKH~NP 293 (536) ++|++|.+.+..++.|=-...| T Consensus 102 rtv~~~~~aGvagi~IEDq~~p 123 (298) T 3eoo_A 102 RTIRSFIKAGVGAVHLEDQVGQ 123 (298) T ss_dssp HHHHHHHHTTCSEEEEECBCCC T ss_pred HHHHHHHHCCCCEEEECCCCCC T ss_conf 9999999759967863697765 No 102 >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase; 2.09A {Bartonella henselae str} PDB: 3enn_A 3emk_A Probab=26.45 E-value=27 Score=13.88 Aligned_cols=84 Identities=21% Similarity=0.274 Sum_probs=50.6 Q ss_pred CCCEEEEEEEEECCCCH-HHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHC Q ss_conf 76136989987545686-99999999879999994276899998899517946534881651985532371555355330 Q gi|254780664|r 13 EIAVKTALISVHNKTGV-VEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSI 91 (536) Q Consensus 13 ~~~ikrALiSV~dKtgl-~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~ 91 (536) +++=|.|||.=.-+ || ..+|+.|.+.|+.++-++-....|++. +++ +++++.+.. .+ T Consensus 24 ~L~gK~alVTGas~-GIG~aia~~la~~Ga~V~i~~r~~~~l~~~------~~~-------~g~~~~~~~--------~D 81 (266) T 3grp_A 24 KLTGRKALVTGATG-GIGEAIARCFHAQGAIVGLHGTREDKLKEI------AAD-------LGKDVFVFS--------AN 81 (266) T ss_dssp CCTTCEEEESSTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHH------HHH-------HCSSEEEEE--------CC T ss_pred CCCCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHH------HHH-------HCCCEEEEE--------EC T ss_conf 78999899938786-899999999998799999997999999999------998-------399779999--------01 Q ss_pred CCCHHHHHHHHH---CCCCCEEEEEEECCC Q ss_conf 889899999997---799841499994888 Q gi|254780664|r 92 RDNPAHMKFMQD---HELESIDLVVVNLYP 118 (536) Q Consensus 92 r~~~~~~~~l~~---~~i~~IDlVvvNLYP 118 (536) -.++++.+++-+ .....||++|.|=.- T Consensus 82 v~~~~~v~~~~~~~~~~~g~iDiLVnnAg~ 111 (266) T 3grp_A 82 LSDRKSIKQLAEVAEREMEGIDILVNNAGI 111 (266) T ss_dssp TTSHHHHHHHHHHHHHHHTSCCEEEECCCC T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEECCCC T ss_conf 799999999999999980998399989967 No 103 >1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A* Probab=26.41 E-value=27 Score=13.87 Aligned_cols=83 Identities=17% Similarity=0.165 Sum_probs=44.9 Q ss_pred HHHHHHHHH---CCCEEEEEHH-HHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCC Q ss_conf 999999998---7999999427-689999889951794653488165198553237155535533088989999999779 Q gi|254780664|r 30 VEFASRLLS---RGIKIISTGG-TCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDNPAHMKFMQDHE 105 (536) Q Consensus 30 ~~la~~L~~---~g~~iisTgG-Ta~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~~~~~~~~l~~~~ 105 (536) ..|++.+.+ .++..++|+- |+...++.|||+.+.+++.. T Consensus 37 ~~L~~~~~~~~l~~i~~V~tS~~t~~~a~~~gi~~~~~~~~~~------------------------------------- 79 (229) T 1lk5_A 37 KLLGEKLKRGEISDIVGVPTSYQAKLLAIEHDIPIASLDQVDA------------------------------------- 79 (229) T ss_dssp HHHHHHHHTTSSCSCEEEESSHHHHHHHHHTTCCBCCGGGCSC------------------------------------- T ss_pred HHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCC------------------------------------- T ss_conf 9999987525556507874569999999977994544122564------------------------------------- Q ss_pred CCCEEEEEEECCCHHHHHCCCC-CHHHHHHCCCCCCHHHHHH--HHCCCCCCEEEECHHHH Q ss_conf 9841499994888899731765-3112320023343469998--74015631353089998 Q gi|254780664|r 106 LESIDLVVVNLYPFEESFCRED-DYYTMVENIDIGGPSMIRA--AAKNHDYVTILTNPQDY 163 (536) Q Consensus 106 i~~IDlVvvNLYPF~~~v~~~~-~~~~~IEnIDIGGpsmiRA--AAKN~~~V~Vi~dp~dY 163 (536) ||+.+= ++ ..+.-.-.|-=||.+|+|- -|.+-+...+|+|..-+ T Consensus 80 ---iDv~iD-----------GaDevd~~l~liKGGGGal~rEKivA~~a~~~i~I~D~~K~ 126 (229) T 1lk5_A 80 ---IDVAVD-----------GADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVLVDERKL 126 (229) T ss_dssp ---EEEEEE-----------CCSEECTTCCEECCTTSCHHHHHHHHHTEEEEEEEEEGGGB T ss_pred ---EEEEEC-----------CHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC T ss_conf ---117841-----------62443400576762006788899999853036999742210 No 104 >2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Probab=26.20 E-value=17 Score=15.31 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=19.4 Q ss_pred ECCCCCCHHHHHHHHHHHHHHH Q ss_conf 7296888899999999998764 Q gi|254780664|r 444 IGSGQTSRVDSTRFAAIKAHNI 465 (536) Q Consensus 444 iGaGQ~sRVda~~iA~~KA~~~ 465 (536) -|.|.++..+|+++|+.||-.. T Consensus 73 ~GGG~sgQA~AiRlaIARAL~~ 94 (146) T 2zkq_i 73 KGGGHVAQIYAIRQSISKALVA 94 (146) T ss_dssp ESSCHHHHHHHHHHHHHHHHHH T ss_pred ECCCHHHHHHHHHHHHHHHHHH T ss_conf 5786008871999999999998 No 105 >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomerase; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A Probab=26.17 E-value=18 Score=15.17 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=16.6 Q ss_pred HHHHHHHCCCEEEE---EHHHHHHHHHCCCCEEEHHH Q ss_conf 99999987999999---42768999988995179465 Q gi|254780664|r 32 FASRLLSRGIKIIS---TGGTCQLLEEEGIPVTSVFD 65 (536) Q Consensus 32 la~~L~~~g~~iis---TgGTa~~l~~~gi~v~~Vs~ 65 (536) |-+-|.+.+.-++- .+.+|+.+.++|.++.-+|. T Consensus 11 lr~ll~~~~~~~~~~~~D~~SA~~~e~aGf~ai~~ss 47 (295) T 1s2w_A 11 LKQMLNSKDLEFIMEAHNGLSARIVQEAGFKGIWGSG 47 (295) T ss_dssp HHHHHHSSSCEEEEEECSHHHHHHHHHHTCSCEEECC T ss_pred HHHHHHCCCCEEEECCCCHHHHHHHHHCCCCEEEECH T ss_conf 9999727997896167789999999985999998156 No 106 >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol- phosphate, lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A Probab=26.07 E-value=27 Score=13.83 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=8.4 Q ss_pred CCCCCCCCCHHHHHHHHCC Q ss_conf 8312221200116776424 Q gi|254780664|r 260 SYNNINDLDAAFELVSEFR 278 (536) Q Consensus 260 SYNNllD~daA~~lv~ef~ 278 (536) +.+|-...+..+.++.++. T Consensus 72 Al~~g~~~~~~~~~~~~~~ 90 (262) T 1rd5_A 72 ALASGTTMDAVLEMLREVT 90 (262) T ss_dssp HHTTTCCHHHHHHHHHHHG T ss_pred CCCCCCCHHHHHHHHHHHC T ss_conf 4356700056676654310 No 107 >3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, translation, tRNA processing, hydrolase, structural genomics; 2.80A {Homo sapiens} Probab=26.07 E-value=27 Score=13.83 Aligned_cols=70 Identities=11% Similarity=0.098 Sum_probs=30.1 Q ss_pred EEEECCEEEEECCCCCCHH-----HHHHHHHHHHHHHHHC--CCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCEEE Q ss_conf 9996893899729688889-----9999999998764200--122223487099973668685558999971995999 Q gi|254780664|r 434 VYAKDGRTVGIGSGQTSRV-----DSTRFAAIKAHNISAQ--ADVKSMTNGSVIASEAFYPFPDGIVEAIKAGVTAVI 504 (536) Q Consensus 434 v~ak~~~tiGiGaGQ~sRV-----da~~iA~~KA~~~~~~--~~~~~~~~g~vlaSDAFFPF~D~ie~aa~~Gi~aIi 504 (536) |+++++++|+.|.-++.+- .+--.|+.+|...... ......++|+.|..- -.|-+-+...+..+||+-|+ T Consensus 51 ViV~~g~IIa~g~N~~~~~~d~t~HaEi~ai~~a~~~~~~~~~~~~~~l~~~tlYtT-~EPC~mCa~ai~~agI~rVv 127 (189) T 3dh1_A 51 LMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSPSEVFEHTVLYVT-VEPCIMCAAALRLMKIPLVV 127 (189) T ss_dssp EEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHHHHCCCHHHHHTTEEEEEE-ECCBHHHHHHHHHHTCCEEE T ss_pred EEEECCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC-CCCHHHHHHHHHHHCCCEEE T ss_conf 999899899986144555788776489999999999998741125432578546852-48819999999995998799 No 108 >1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A* Probab=25.77 E-value=28 Score=13.79 Aligned_cols=31 Identities=10% Similarity=0.153 Sum_probs=19.8 Q ss_pred HHCCCCCCHHHHH--HHHCCCCCCEEEECHHHH Q ss_conf 2002334346999--874015631353089998 Q gi|254780664|r 133 VENIDIGGPSMIR--AAAKNHDYVTILTNPQDY 163 (536) Q Consensus 133 IEnIDIGGpsmiR--AAAKN~~~V~Vi~dp~dY 163 (536) .-.|-=||-+|+| .-|.+-+...+|+|..-+ T Consensus 95 l~liKGgGGal~rEKivA~~a~~~i~I~DesK~ 127 (227) T 1uj6_A 95 LALIKGMGGALLREKIVERVAKEFIVIADHTKK 127 (227) T ss_dssp GEEECCTTSCHHHHHHHHHTEEEEEEEEEGGGB T ss_pred CCEEECCCHHHHHHHHHHHHHHCEEEEECHHHH T ss_conf 002423618889999999850117999622240 No 109 >3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A Probab=25.56 E-value=28 Score=13.77 Aligned_cols=16 Identities=19% Similarity=0.578 Sum_probs=6.7 Q ss_pred HHHHHHHHHHCCCEEE Q ss_conf 6999999998799999 Q gi|254780664|r 29 VVEFASRLLSRGIKII 44 (536) Q Consensus 29 l~~la~~L~~~g~~ii 44 (536) -...++.|.+.++.++ T Consensus 58 a~~~~~~L~~~~v~~i 73 (356) T 3ipc_A 58 GISVANKFVADGVKFV 73 (356) T ss_dssp HHHHHHHHHHTTCCEE T ss_pred HHHHHHHHHHCCCEEE T ss_conf 9999999997799099 No 110 >2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.14.1.1 PDB: 1gix_L* 1hnw_I* 1hnx_I* 1hnz_I* 1hr0_I 1i94_I* 1i95_I* 1i96_I* 1i97_I* 1ibk_I* 1ibl_I* 1ibm_I 1j5e_I 1jgo_L* 1jgp_L* 1jgq_L* 1ml5_L* 1n32_I* 1n33_I* 1n34_I ... Probab=25.51 E-value=18 Score=15.17 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=18.8 Q ss_pred ECCCCCCHHHHHHHHHHHHHHH Q ss_conf 7296888899999999998764 Q gi|254780664|r 444 IGSGQTSRVDSTRFAAIKAHNI 465 (536) Q Consensus 444 iGaGQ~sRVda~~iA~~KA~~~ 465 (536) -|.|.++..+|+++|+.||-.. T Consensus 66 ~GGG~sgQa~Air~aiaRaL~~ 87 (128) T 2vqe_I 66 RGGGKSGQIDAIKLGIARALVQ 87 (128) T ss_dssp ESSCHHHHHHHHHHHHHHHHHH T ss_pred ECCCHHHHHHHHHHHHHHHHHH T ss_conf 7886638999999999999999 No 111 >1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.90A {Enterococcus faecalis V583} SCOP: c.1.15.6 Probab=24.81 E-value=29 Score=13.67 Aligned_cols=69 Identities=19% Similarity=0.262 Sum_probs=34.3 Q ss_pred CCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHC-CCCCHHHHHHCCCCCCHHHHHHHHCC Q ss_conf 85532371555355330889899999997799841499994888899731-76531123200233434699987401 Q gi|254780664|r 75 GRVKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFC-REDDYYTMVENIDIGGPSMIRAAAKN 150 (536) Q Consensus 75 GRVKTLHP~I~ggIL~~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~-~~~~~~~~IEnIDIGGpsmiRAAAKN 150 (536) |=|-+||..+-|-+--.-+....++.++++|.. +-||---|..+.+. .....++-|||. ..+||..||. T Consensus 38 giv~~l~~~~~GevW~~~~i~~~k~~ie~~GL~---~~vVEs~pvhe~Ik~g~~~~d~~Ie~~----~~sirnla~~ 107 (367) T 1tz9_A 38 GVVGTLLNKLPGDVWTVAEIQALKQSVEQEGLA---LLGIESVAIHDAIKAGTDQRDHYIDNY----RQTLRNLGKC 107 (367) T ss_dssp EEEECCSSSCTTCCCCHHHHHHHHHHHHHTTCE---EEEECSCCCCHHHHHTCSTHHHHHHHH----HHHHHHHHHT T ss_pred CHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCE---EEEEECCCCHHHHHCCCHHHHHHHHHH----HHHHHHHHHC T ss_conf 277745489999989999999999999976996---998737884798864986699999999----9999999966 No 112 >3ofo_I 30S ribosomal protein S9; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_I* 3iy8_I 2wwl_I 3ofp_I 2qal_I* 1p6g_I 1p87_I 2aw7_I 2avy_I 2i2u_I 2i2p_I* 2qan_I* 2qb9_I* 2qbb_I* 2qbd_I 2qbf_I 2qbh_I* 2qbj_I* 2qou_I* 2qow_I* ... Probab=24.79 E-value=19 Score=15.01 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=17.4 Q ss_pred ECCCCCCHHHHHHHHHHHHHH Q ss_conf 729688889999999999876 Q gi|254780664|r 444 IGSGQTSRVDSTRFAAIKAHN 464 (536) Q Consensus 444 iGaGQ~sRVda~~iA~~KA~~ 464 (536) -|.|.++..+|+++|+.||-. T Consensus 65 ~GGG~sgQa~Air~aiaraL~ 85 (127) T 3ofo_I 65 KGGGISGQAGAIRHGITRALM 85 (127) T ss_dssp ESSCHHHHHHHHHHHHHHHTT T ss_pred ECCCHHHHHHHHHHHHHHHHH T ss_conf 789766899999999999999 No 113 >1z7m_E ATP phosphoribosyltransferase; ATP-PRT, histidine biosynthesis, hiszg, allosteric, evolution; 2.90A {Lactococcus lactis} SCOP: c.94.1.1 PDB: 1z7n_E* Probab=24.59 E-value=18 Score=15.08 Aligned_cols=15 Identities=27% Similarity=0.333 Sum_probs=8.7 Q ss_pred HHHHHHHHCCCCEEE Q ss_conf 768999988995179 Q gi|254780664|r 48 GTCQLLEEEGIPVTS 62 (536) Q Consensus 48 GTa~~l~~~gi~v~~ 62 (536) .|.++|+++|+++.+ T Consensus 14 ~t~~ll~~~Gl~~~~ 28 (208) T 1z7m_E 14 QVTKLLENADYDVEP 28 (208) T ss_dssp HHHHHHHTTTCCCCC T ss_pred HHHHHHHHCCCCCCC T ss_conf 999999987998555 No 114 >1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12 Probab=24.44 E-value=24 Score=14.18 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=25.7 Q ss_pred HHCCCCCEEEEEEEC--CCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCC-EEEECHHHHHHHHHHH Q ss_conf 977998414999948--88899731765311232002334346999874015631-3530899989889875 Q gi|254780664|r 102 QDHELESIDLVVVNL--YPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYV-TILTNPQDYPLFLAEM 170 (536) Q Consensus 102 ~~~~i~~IDlVvvNL--YPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V-~Vi~dp~dY~~~~~el 170 (536) ......-||. =|.| ++|++ +.++++ -||.+.+...+ ++-+||+++...++-. T Consensus 7 ~~~~~~lIDt-H~HL~~~~~~~------d~~~vl----------~~a~~~gv~~ii~~~~~~~~~~~~~~l~ 61 (268) T 1j6o_A 7 HHHHHHMVDT-HAHLHFHQFDD------DRNAVI----------SSFEENNIEFVVNVGVNLEDSKKSLDLS 61 (268) T ss_dssp --CCCCEEEE-EECTTSGGGTT------THHHHH----------HTTTTTTEEEEEEECSSHHHHHHHHHHH T ss_pred CCCCCCEEEE-CCCCCCHHHCC------CHHHHH----------HHHHHCCCCEEEEECCCHHHHHHHHHHH T ss_conf 4367877985-34789724465------999999----------9999889988999059999999999998 No 115 >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} Probab=24.26 E-value=29 Score=13.60 Aligned_cols=99 Identities=12% Similarity=0.165 Sum_probs=44.2 Q ss_pred CHHHHHHHHCCCCCCCEEEE-ECCCCCCCCCCCCHHHHHHHHHHHHCCC--------CCC------CEEEEE---CCCC- Q ss_conf 00116776424556727999-6156865654520168999999853321--------320------045554---2754- Q gi|254780664|r 268 DAAFELVSEFRSQDCAACVI-VKHMNPCGVATADTLVEAYRRALSCDPI--------SAF------GGIIAF---NREV- 328 (536) Q Consensus 268 daA~~lv~ef~~~~~Pa~vI-vKH~NPCGvA~~~~~~~Ay~~A~~~DP~--------SAF------GGIIa~---N~~v- 328 (536) +..++++..+.+.+...+=| |-+.+| +|=|..+-.|..+|++.... ..+ =-++.+ |--. T Consensus 34 e~s~~~l~~l~~~G~D~iEiGiPfSDP--vaDGpvIq~a~~raL~~G~~~~~~~~~~~~~r~~~~~~p~vlM~Y~N~i~~ 111 (271) T 3nav_A 34 EQSLAIMQTLIDAGADALELGMPFSDP--LADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLVYA 111 (271) T ss_dssp HHHHHHHHHHHHTTCSSEEEECCCCCG--GGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEECHHHHHH T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCC--CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHH T ss_conf 899999999997699999978998887--776899999988877648607667667766420267888799975046655 Q ss_pred --CHHHHHHHHHHHHHHHEECCCCHHHHHHHH---CCCCCEEEEC Q ss_conf --214578788654311112687989998851---2455315631 Q gi|254780664|r 329 --DQEVAKEVIKVFTEAIIAPTLSEEAADVLA---KKPSMRFLKT 368 (536) Q Consensus 329 --d~~~A~~I~~~F~EvIiAP~f~~eAleiL~---~KKnlRil~~ 368 (536) -++.++...+..++++|-||--.|..+.+. ++.++.++.+ T Consensus 112 ~G~e~F~~~~~~~Gv~GviipDLp~ee~~~~~~~~~~~gl~~I~l 156 (271) T 3nav_A 112 RGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQPIFI 156 (271) T ss_dssp TCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEEEE T ss_pred CCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEE T ss_conf 289999999987699489945898156599999987679717999 No 116 >3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides} Probab=24.08 E-value=30 Score=13.58 Aligned_cols=15 Identities=0% Similarity=0.025 Sum_probs=7.1 Q ss_pred HHHHHHCCCCCEEEEEEE Q ss_conf 999997799841499994 Q gi|254780664|r 98 MKFMQDHELESIDLVVVN 115 (536) Q Consensus 98 ~~~l~~~~i~~IDlVvvN 115 (536) .++++++|+ +++++| T Consensus 28 ~~~a~~~G~---~~~~~~ 42 (291) T 3l49_A 28 IAEIERLGG---TAIALD 42 (291) T ss_dssp HHHHHHTTC---EEEEEE T ss_pred HHHHHHCCC---EEEEEE T ss_conf 999997499---999993 No 117 >1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1 Probab=24.04 E-value=30 Score=13.57 Aligned_cols=16 Identities=6% Similarity=0.324 Sum_probs=8.3 Q ss_pred CCCCEEEEEEEEECCC Q ss_conf 7761369899875456 Q gi|254780664|r 12 GEIAVKTALISVHNKT 27 (536) Q Consensus 12 ~~~~ikrALiSV~dKt 27 (536) ++.+++-|+|+|||.. T Consensus 10 ~p~~~~~avitvsD~~ 25 (169) T 1y5e_A 10 APKEVRCKIVTISDTR 25 (169) T ss_dssp --CCCEEEEEEECSSC T ss_pred CCCCCEEEEEEECCCC T ss_conf 7878789999981888 No 118 >2aee_A OPRT, oprtase, orotate phosphoribosyltransferase; structural genomics, PSI, protein structure initiative; 1.95A {Streptococcus pyogenes} SCOP: c.61.1.1 Probab=23.96 E-value=30 Score=13.56 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=11.2 Q ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 79996156865654520168999999853 Q gi|254780664|r 284 ACVIVKHMNPCGVATADTLVEAYRRALSC 312 (536) Q Consensus 284 a~vIvKH~NPCGvA~~~~~~~Ay~~A~~~ 312 (536) -|+||--.-- +|.++.+|.+.-.+. T Consensus 119 ~VliVEDViT----TG~S~~~ai~~l~~~ 143 (211) T 2aee_A 119 KMVIIEDLIS----TGGSVLDAAAAASRE 143 (211) T ss_dssp EEEEEEEEES----SCHHHHHHHHHHHHT T ss_pred EEEEEEEEEC----CCCCHHHHHHHHHHC T ss_conf 8999853045----672157654468874 No 119 >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* Probab=23.87 E-value=30 Score=13.55 Aligned_cols=95 Identities=13% Similarity=0.093 Sum_probs=53.0 Q ss_pred HHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCC Q ss_conf 68999988995179465348816519855323715553553308898999999977998414999948888997317653 Q gi|254780664|r 49 TCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDD 128 (536) Q Consensus 49 Ta~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~ 128 (536) -++.|...|++|+-|.. -||.+..--.-..+.++| +..|...|++.+|...|.|++-+=. T Consensus 21 la~~L~~~g~~vvviD~---d~~~~~~~~~~g~~~v~g-------D~td~~~L~~a~i~~a~~vii~~~~---------- 80 (144) T 2hmt_A 21 IVKELHRMGHEVLAVDI---NEEKVNAYASYATHAVIA-------NATEENELLSLGIRNFEYVIVAIGA---------- 80 (144) T ss_dssp HHHHHHHTTCCCEEEES---CHHHHHTTTTTCSEEEEC-------CTTCHHHHHTTTGGGCSEEEECCCS---------- T ss_pred HHHHHHHCCCEEEEEEC---CHHHHHHHHHCCCEEEEE-------CCCCHHHHHHCCCCCCCEEEEEECC---------- T ss_conf 99999988991999979---679999998539749993-------1788888863022349999998188---------- Q ss_pred HHHHHHCCCCCCHHHHHHHHCCCC--CCEEEECHHHHHHHHHHHH Q ss_conf 112320023343469998740156--3135308999898898753 Q gi|254780664|r 129 YYTMVENIDIGGPSMIRAAAKNHD--YVTILTNPQDYPLFLAEMD 171 (536) Q Consensus 129 ~~~~IEnIDIGGpsmiRAAAKN~~--~V~Vi~dp~dY~~~~~el~ 171 (536) |.....++..++|-+. ++.+.++-.++...+.++- T Consensus 81 --------d~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~G 117 (144) T 2hmt_A 81 --------NIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIG 117 (144) T ss_dssp --------CHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHT T ss_pred --------CHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCC T ss_conf --------6899999999998779985999994688899999779 No 120 >2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} Probab=23.32 E-value=31 Score=13.48 Aligned_cols=101 Identities=12% Similarity=0.086 Sum_probs=54.6 Q ss_pred EEEEEEEEC---CCCHHHHHHHHHHCCCE--EEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHH-- Q ss_conf 698998754---56869999999987999--99942768999988995179465348816519855323715553553-- Q gi|254780664|r 17 KTALISVHN---KTGVVEFASRLLSRGIK--IISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGIL-- 89 (536) Q Consensus 17 krALiSV~d---Ktgl~~la~~L~~~g~~--iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL-- 89 (536) .-+++|.-- =.....+|+.|.+.|.+ +++++.-...+++.|+.+..+......++... ..........+. T Consensus 9 hi~~~~~p~~GH~~p~l~la~~L~~~GH~V~~~t~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 85 (430) T 2iyf_A 9 HIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAATGPRPVLYHSTLPGPDADP---EAWGSTLLDNVEPF 85 (430) T ss_dssp EEEEECCSCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHTTSCEEEECCCCSCCTTSCG---GGGCSSHHHHHHHH T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCEEEEECCCCCCCCCCH---HHHHHHHHHHHHHH T ss_conf 899967874507999999999999788989999782167778866987887167787432351---34566789999999 Q ss_pred HCCCCHHHHHHHHHCCCCCEEEEEEECCCHH Q ss_conf 3088989999999779984149999488889 Q gi|254780664|r 90 SIRDNPAHMKFMQDHELESIDLVVVNLYPFE 120 (536) Q Consensus 90 ~~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~ 120 (536) .+.-......-.+.+.-...|+|++..+.+. T Consensus 86 ~~~~~~~l~~l~~~~~~~~pD~vi~~~~~~~ 116 (430) T 2iyf_A 86 LNDAIQALPQLADAYADDIPDLVLHDITSYP 116 (430) T ss_dssp HHHHHHHHHHHHHHHTTSCCSEEEEETTCHH T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCHH T ss_conf 9999999999999986049839997573026 No 121 >2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative; 2.09A {Plasmodium falciparum 3D7} Probab=22.80 E-value=26 Score=14.02 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=12.4 Q ss_pred CCEEEEEH-HHHHHHHHCCCCEEEHHHH Q ss_conf 99999942-7689999889951794653 Q gi|254780664|r 40 GIKIISTG-GTCQLLEEEGIPVTSVFDI 66 (536) Q Consensus 40 g~~iisTg-GTa~~l~~~gi~v~~Vs~~ 66 (536) ++..++|+ -|+..+++.|||+.+.+++ T Consensus 57 ~i~~V~tS~~T~~~a~~~Gi~v~~l~~~ 84 (244) T 2f8m_A 57 DVVCIPTSIDTELKARKLGIPLTTLEKH 84 (244) T ss_dssp SCEEEESSHHHHHHHHHHTCCBCCCCSS T ss_pred CEEEECCCHHHHHHHHHCCCCCCCCHHC T ss_conf 5499748589999998859971170235 No 122 >1q1g_A Uridine phosphorylase putative; transition state complex, transferase; HET: MTI; 2.02A {Plasmodium falciparum 3D7} SCOP: c.56.2.1 PDB: 1nw4_A* 3fow_A* Probab=22.70 E-value=31 Score=13.39 Aligned_cols=50 Identities=6% Similarity=0.032 Sum_probs=24.2 Q ss_pred HHHHHHHHHCCCCCEEEEEECCEEEEE----CCCCC--CHHHHHHHHHHHHHHHHH Q ss_conf 999999860056677999968938997----29688--889999999999876420 Q gi|254780664|r 418 MKFAFKVVKHVKSNAVVYAKDGRTVGI----GSGQT--SRVDSTRFAAIKAHNISA 467 (536) Q Consensus 418 L~FA~kv~K~vkSNAIv~ak~~~tiGi----GaGQ~--sRVda~~iA~~KA~~~~~ 467 (536) .+|+.-....++.=+|..+-+...-|- ...|+ +--...++|++-+..... T Consensus 189 al~~va~~~gv~a~ail~Vsd~~~~~~~~~~~~~~~~~~~~~mi~iALea~~~L~~ 244 (276) T 1q1g_A 189 TLMVIGTLRKVKTGGILIVDGCPFKWDEGDFDNNLVPHQLENMIKIALGACAKLAT 244 (276) T ss_dssp HHHHHHHHHTCEEEEEEEECBCGGGGGGTCBCSSCCHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999998598099999996876776656763256688999999999999999999 No 123 >3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans} Probab=22.55 E-value=32 Score=13.37 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=20.5 Q ss_pred HHHHHHHEECCCCHHHHHHHH------CCCCCEEEECCC Q ss_conf 654311112687989998851------245531563167 Q gi|254780664|r 338 KVFTEAIIAPTLSEEAADVLA------KKPSMRFLKTSS 370 (536) Q Consensus 338 ~~F~EvIiAP~f~~eAleiL~------~KKnlRil~~~~ 370 (536) +-|++|++||+|.+.+..++. -|||.-+|-.+. T Consensus 81 kaF~~vv~a~~~~~G~~~liq~~GlG~l~PNtvllg~~~ 119 (294) T 3g40_A 81 FSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPE 119 (294) T ss_dssp EEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCS T ss_pred EEEEEEEECCCHHHHHHHHHHHCCCCCCCCCEEEECCCC T ss_conf 178999967998999999999739878888878967998 No 124 >3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A Probab=22.05 E-value=32 Score=13.30 Aligned_cols=18 Identities=6% Similarity=0.196 Sum_probs=10.7 Q ss_pred HHHHHHCCCCCEEEECCC Q ss_conf 998851245531563167 Q gi|254780664|r 353 AADVLAKKPSMRFLKTSS 370 (536) Q Consensus 353 AleiL~~KKnlRil~~~~ 370 (536) ..+.|.+.++..+|-+.. T Consensus 9 l~~~l~~~~~~~liDvR~ 26 (103) T 3eme_A 9 LKNKLLESKPVQIVDVRT 26 (103) T ss_dssp HHHGGGSSSCCEEEECSC T ss_pred HHHHHHCCCCEEEEECCC T ss_conf 999986799819998988 No 125 >1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine metabolism, catalytic loop; HET: 9DA; 1.85A {Giardia intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A* Probab=21.48 E-value=18 Score=15.20 Aligned_cols=15 Identities=7% Similarity=-0.144 Sum_probs=5.6 Q ss_pred CCCCHHHHHHHCCCC Q ss_conf 685558999971995 Q gi|254780664|r 487 PFPDGIVEAIKAGVT 501 (536) Q Consensus 487 PF~D~ie~aa~~Gi~ 501 (536) ++-.|-+.+.+.|++ T Consensus 159 ~~~~Gre~l~~~~i~ 173 (186) T 1l1q_A 159 EALKGREKVGQKCTR 173 (186) T ss_dssp GGGCHHHHHTTTCCC T ss_pred CCCCHHHHHHCCCCC T ss_conf 778858885068973 No 126 >1rrv_A Glycosyltransferase GTFD; GT-B, rossmann fold; HET: DVV TYD; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5 Probab=21.23 E-value=33 Score=13.19 Aligned_cols=47 Identities=30% Similarity=0.411 Sum_probs=36.9 Q ss_pred EEEEEEECCCC----HHHHHHHHHHCCCE--EEEEHHHHHHHHHCCCCEEEHH Q ss_conf 98998754568----69999999987999--9994276899998899517946 Q gi|254780664|r 18 TALISVHNKTG----VVEFASRLLSRGIK--IISTGGTCQLLEEEGIPVTSVF 64 (536) Q Consensus 18 rALiSV~dKtg----l~~la~~L~~~g~~--iisTgGTa~~l~~~gi~v~~Vs 64 (536) |-||+..--.| +..+|+.|.+.|.+ ++++++....+++.|+++..+. T Consensus 2 rIl~~~~gt~Ghv~P~l~lA~~L~~rGh~V~~~t~~~~~~~v~~~g~~~~~i~ 54 (416) T 1rrv_A 2 RVLLSVCGTRGDVEIGVALADRLKALGVQTRMCAPPAAEERLAEVGVPHVPVG 54 (416) T ss_dssp EEEEEEESCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEECS T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHCCCEEEECC T ss_conf 49998798667899999999999987998999958567778987798699868 No 127 >1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protein structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A* Probab=20.98 E-value=24 Score=14.25 Aligned_cols=14 Identities=21% Similarity=0.321 Sum_probs=9.6 Q ss_pred HHHHHHHHCCCCEE Q ss_conf 76899998899517 Q gi|254780664|r 48 GTCQLLEEEGIPVT 61 (536) Q Consensus 48 GTa~~l~~~gi~v~ 61 (536) .|.++|+++|+++. T Consensus 35 ~t~~lL~~aGl~~~ 48 (304) T 1nh8_A 35 PATEILAEAGYRRR 48 (304) T ss_dssp HHHHHHHHTTCCCC T ss_pred HHHHHHHHCCCCCC T ss_conf 99999998799755 No 128 >3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Probab=20.62 E-value=34 Score=13.10 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=4.3 Q ss_pred HHHHHHCCCC Q ss_conf 9999977998 Q gi|254780664|r 98 MKFMQDHELE 107 (536) Q Consensus 98 ~~~l~~~~i~ 107 (536) .+.++++|+. T Consensus 54 ~~~l~~~gl~ 63 (269) T 3ngf_A 54 ARELKQHNLT 63 (269) T ss_dssp HHHHHHTTCE T ss_pred HHHHHHCCCC T ss_conf 9999983996 No 129 >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix K1} Probab=20.26 E-value=35 Score=13.05 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=7.1 Q ss_pred HHHHHHCCCCCCEEEE Q ss_conf 9998740156313530 Q gi|254780664|r 143 MIRAAAKNHDYVTILT 158 (536) Q Consensus 143 miRAAAKN~~~V~Vi~ 158 (536) +..+++|.-+.+.+++ T Consensus 88 v~e~~~~Gvk~~viit 103 (297) T 2yv2_A 88 VYEAVDAGIRLVVVIT 103 (297) T ss_dssp HHHHHHTTCSEEEECC T ss_pred HHHHHHCCCCEEEEEC T ss_conf 9999877998899967 No 130 >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Vibrio parahaemolyticus AQ3810} Probab=20.20 E-value=35 Score=13.04 Aligned_cols=80 Identities=14% Similarity=0.021 Sum_probs=44.7 Q ss_pred EEEEEEEEECCCCH-HHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCCC Q ss_conf 36989987545686-99999999879999994276899998899517946534881651985532371555355330889 Q gi|254780664|r 16 VKTALISVHNKTGV-VEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDN 94 (536) Q Consensus 16 ikrALiSV~dKtgl-~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~~ 94 (536) ||.+||.=.-+ || ..+|+.|.+.|+.++-++-....|++. .++ +..++..+ -.+-.+ T Consensus 1 MkiVlITGass-GIG~a~A~~la~~G~~V~l~~R~~~~l~~~------~~~-------~~~~~~~~--------~~Dv~~ 58 (230) T 3guy_A 1 MSLIVITGASS-GLGAELAKLYDAEGKATYLTGRSESKLSTV------TNC-------LSNNVGYR--------ARDLAS 58 (230) T ss_dssp --CEEEESTTS-HHHHHHHHHHHHTTCCEEEEESCHHHHHHH------HHT-------CSSCCCEE--------ECCTTC T ss_pred CCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHH------HHH-------HCCCCCEE--------EEECCC T ss_conf 99999918771-999999999998799899998999999999------998-------54346889--------700699 Q ss_pred HHHHHHHHHCCCCCEEEEEEECC Q ss_conf 89999999779984149999488 Q gi|254780664|r 95 PAHMKFMQDHELESIDLVVVNLY 117 (536) Q Consensus 95 ~~~~~~l~~~~i~~IDlVvvNLY 117 (536) +++..++-+.-...+|++|.|-- T Consensus 59 ~~~v~~~~~~~~~~~d~linnaG 81 (230) T 3guy_A 59 HQEVEQLFEQLDSIPSTVVHSAG 81 (230) T ss_dssp HHHHHHHHHSCSSCCSEEEECCC T ss_pred HHHHHHHHHHHCCCCCEEEECCC T ss_conf 99999999985883879998687 No 131 >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} Probab=20.12 E-value=35 Score=13.03 Aligned_cols=76 Identities=14% Similarity=0.225 Sum_probs=40.6 Q ss_pred EEEEEEEECCCCH-HHHHHHHHHCCCEEEEEHHHH-------HHHHHCCCCEEEHH-HHCCCCHHCCCCCCCCCCHHHHH Q ss_conf 6989987545686-999999998799999942768-------99998899517946-53488165198553237155535 Q gi|254780664|r 17 KTALISVHNKTGV-VEFASRLLSRGIKIISTGGTC-------QLLEEEGIPVTSVF-DITKFPEIMGGRVKTLHPKIYGG 87 (536) Q Consensus 17 krALiSV~dKtgl-~~la~~L~~~g~~iisTgGTa-------~~l~~~gi~v~~Vs-~~TgfpEil~GRVKTLHP~I~gg 87 (536) |++||.=.- +|| ..+|+.|.+.|+.++-++-+. +.|++.|-.+.-+. |+|...++ T Consensus 8 k~vlITGas-~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~i~~~g~~~~~~~~Dvs~~~~v--------------- 71 (252) T 3h7a_A 8 ATVAVIGAG-DYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEV--------------- 71 (252) T ss_dssp CEEEEECCS-SHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHH--------------- T ss_pred CEEEEECCC-HHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHH--------------- T ss_conf 989997585-5899999999998799999998999999999999996398399997776899999--------------- Q ss_pred HHHCCCCHHHHHHHHHCCCCCEEEEEEECC Q ss_conf 533088989999999779984149999488 Q gi|254780664|r 88 ILSIRDNPAHMKFMQDHELESIDLVVVNLY 117 (536) Q Consensus 88 IL~~r~~~~~~~~l~~~~i~~IDlVvvNLY 117 (536) +.-.+.++++ .++|.+|+|-. T Consensus 72 -------~~~~~~i~~~--~~~d~lv~nag 92 (252) T 3h7a_A 72 -------TAFLNAADAH--APLEVTIFNVG 92 (252) T ss_dssp -------HHHHHHHHHH--SCEEEEEECCC T ss_pred -------HHHHHHHHHC--CCEEEEECCCE T ss_conf -------9888777642--75012301432 No 132 >1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1 Probab=20.11 E-value=35 Score=13.03 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=29.2 Q ss_pred HHHHHHHHHHCCCEEEEEHHH-------HHHHHHCCCCEEEHH Q ss_conf 699999999879999994276-------899998899517946 Q gi|254780664|r 29 VVEFASRLLSRGIKIISTGGT-------CQLLEEEGIPVTSVF 64 (536) Q Consensus 29 l~~la~~L~~~g~~iisTgGT-------a~~l~~~gi~v~~Vs 64 (536) -.+|++.|.+.|+.++..||. ++-.+++|-.|+-|. T Consensus 22 a~~lg~~La~~g~~lV~GGG~~GlM~ava~ga~~~gg~v~Gi~ 64 (191) T 1t35_A 22 AAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMENGGTAIGVM 64 (191) T ss_dssp HHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHTTTCCEEEEE T ss_pred HHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEC T ss_conf 9999999998799699899858899999989997599343206 No 133 >3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans} Probab=20.10 E-value=35 Score=13.03 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=16.0 Q ss_pred HHHHHHHH-HCCCEEEE-E--HHH----HHHHHHCCCCEEEH Q ss_conf 99999999-87999999-4--276----89999889951794 Q gi|254780664|r 30 VEFASRLL-SRGIKIIS-T--GGT----CQLLEEEGIPVTSV 63 (536) Q Consensus 30 ~~la~~L~-~~g~~iis-T--gGT----a~~l~~~gi~v~~V 63 (536) ...++.|. +.++..+- . .++ +..++++++|+.-. T Consensus 62 ~~~a~~Lv~~~~V~~viG~~~S~~~~a~~~~~~~~~vp~i~~ 103 (379) T 3n0w_A 62 LSIAREWFDRDGVDAIFDVVNSGTALAINNLVKDKKKLAFIT 103 (379) T ss_dssp HHHHHHHHHHSCCCEEEECCCHHHHHHHHHHHHHHTCEEEEC T ss_pred HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEC T ss_conf 999999997479869996142198999999998724772330 Done!