Query         gi|254780664|ref|YP_003065077.1| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 536
No_of_seqs    170 out of 2250
Neff          4.9 
Searched_HMMs 23785
Date          Tue May 31 17:17:17 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780664.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1g8m_A Aicar transformylase-IM 100.0       0       0 1607.8  44.5  509   14-536     3-593 (593)
  2 1zcz_A Bifunctional purine bio 100.0       0       0 1488.7  40.2  458   10-536     7-464 (464)
  3 2yvq_A Carbamoyl-phosphate syn  99.1 7.5E-10 3.2E-14   90.6   9.4  123   11-171    19-143 (143)
  4 1a9x_A Carbamoyl phosphate syn  98.7 2.1E-07 8.9E-12   72.8  11.6  183  107-300   350-610 (1073)
  5 1vmd_A MGS, methylglyoxal synt  98.1 5.6E-05 2.4E-09   55.2  10.9  119   16-174    28-150 (178)
  6 1wo8_A Methylglyoxal synthase;  98.1   1E-05 4.4E-10   60.5   7.0  117   16-172     1-122 (126)
  7 1b93_A Protein (methylglyoxal   97.7 0.00028 1.2E-08   50.1   9.6  116   18-173    14-133 (152)
  8 2pju_A Propionate catabolism o  94.7   0.078 3.3E-06   32.3   6.3  134   18-158    38-179 (225)
  9 2hvw_A Deoxycytidylate deamina  94.6    0.29 1.2E-05   28.2   9.7  104  418-528    46-173 (184)
 10 2q5c_A NTRC family transcripti  91.8    0.13 5.3E-06   30.8   3.6  130   30-167    42-177 (196)
 11 1iuk_A Hypothetical protein TT  86.9    0.62 2.6E-05   25.8   4.1   40  488-529    83-123 (140)
 12 3ff4_A Uncharacterized protein  86.4    0.98 4.1E-05   24.3   4.8   38  489-528    72-110 (122)
 13 1y81_A Conserved hypothetical   85.2    0.86 3.6E-05   24.7   4.1   36  490-527    84-120 (138)
 14 2d59_A Hypothetical protein PH  84.8    0.97 4.1E-05   24.4   4.2   38  489-528    91-129 (144)
 15 2v82_A 2-dehydro-3-deoxy-6-pho  82.4     1.7 7.3E-05   22.5   4.7   84  266-360    17-100 (212)
 16 1wa3_A 2-keto-3-deoxy-6-phosph  81.9     1.5 6.4E-05   23.0   4.2   39  321-359    64-102 (205)
 17 1vhc_A Putative KHG/KDPG aldol  81.9     1.2 5.2E-05   23.6   3.8   89  260-360    21-109 (224)
 18 1mxs_A KDPG aldolase; 2-keto-3  81.1    0.94   4E-05   24.5   3.0   92  257-360    27-118 (225)
 19 2yw3_A 4-hydroxy-2-oxoglutarat  80.8     1.3 5.6E-05   23.4   3.6   86  261-360    18-103 (207)
 20 1wbh_A KHG/KDPG aldolase; lyas  78.8     1.5 6.3E-05   23.0   3.4   94  255-360    15-108 (214)
 21 3d8t_A Uroporphyrinogen-III sy  75.6     4.2 0.00017   19.8   6.1   17  155-171    88-104 (286)
 22 2b3j_A TRNA adenosine deaminas  75.5     3.4 0.00014   20.4   4.4   66  434-504    32-102 (159)
 23 2ioj_A Hypothetical protein AF  73.9     1.7 7.3E-05   22.5   2.6   45  490-534    64-109 (139)
 24 3lab_A Putative KDPG (2-keto-3  73.0     1.5 6.3E-05   23.0   2.1   89  260-360    17-105 (217)
 25 3iaa_A CALG2; glycosyltransfer  71.5     5.1 0.00022   19.1   5.1  114    5-120     9-130 (416)
 26 3ia7_A CALG4; glycosysltransfe  68.4     5.9 0.00025   18.7   7.2  106   15-121     3-115 (402)
 27 2duw_A Putative COA-binding pr  68.3     5.4 0.00023   18.9   4.1   37  490-527    85-121 (145)
 28 1zmt_A Haloalcohol dehalogenas  66.9     3.1 0.00013   20.7   2.6   39   16-54      1-39  (254)
 29 2isb_A Fumarase, FUM-1; NP_069  66.4     4.9 0.00021   19.2   3.6   30  329-358   100-130 (192)
 30 1o8b_A Ribose 5-phosphate isom  64.8       2 8.5E-05   22.0   1.4   31  133-163    90-122 (219)
 31 2w4l_A DCMP deaminse, deoxycyt  60.5     8.2 0.00034   17.6   6.7   53  474-527    94-150 (178)
 32 1wkq_A Guanine deaminase; doma  55.1      10 0.00042   17.0   9.2   85  416-505    17-108 (164)
 33 2b3z_A Riboflavin biosynthesis  53.6      10 0.00044   16.8   7.2   33  493-525   265-297 (373)
 34 2pjm_A Ribose-5-phosphate isom  53.4      11 0.00044   16.8   3.5   30  134-163    94-125 (226)
 35 3kwm_A Ribose-5-phosphate isom  53.2     9.7 0.00041   17.1   3.2   61   95-163    60-128 (224)
 36 1z3a_A TRNA-specific adenosine  52.6      11 0.00046   16.7   6.1   27  319-345    78-105 (168)
 37 2g6v_A Riboflavin biosynthesis  52.0      11 0.00047   16.7   6.3   38  482-523   302-339 (402)
 38 2pb2_A Acetylornithine/succiny  51.5     8.5 0.00036   17.5   2.7   18  504-521   393-410 (420)
 39 3iv4_A Putative oxidoreductase  51.2       7  0.0003   18.1   2.2   33  283-317    25-57  (112)
 40 1p6o_A Cytosine deaminase; hyd  51.1      11 0.00048   16.6   5.8   68  432-505    38-111 (161)
 41 3p9z_A Uroporphyrinogen III co  50.7      12 0.00049   16.5   5.1   30  493-524   197-226 (229)
 42 3kd8_A 2,3-bisphosphoglycerate  49.1     5.1 0.00022   19.1   1.3   11   15-25      3-13  (399)
 43 2nx8_A TRNA-specific adenosine  47.8      13 0.00054   16.2   6.3   66  434-504    41-111 (179)
 44 2gzx_A Putative TATD related D  47.7      13 0.00054   16.2   3.2   29  144-172    23-52  (265)
 45 2hxv_A Diaminohydroxyphosphori  46.7      13 0.00056   16.1   8.5   17  492-508   279-295 (360)
 46 1jr2_A Uroporphyrinogen-III sy  46.7      13 0.00056   16.1   4.7   58   98-173    41-98  (286)
 47 1vef_A Acetylornithine/acetyl-  46.0      10 0.00043   17.0   2.4   17  504-520   372-388 (395)
 48 2vld_A NUCS, UPF0286 protein p  45.6      11 0.00046   16.7   2.5   29  341-370   204-232 (251)
 49 1yxm_A Pecra, peroxisomal tran  45.1      14 0.00059   15.9   3.8   97    6-117     8-109 (303)
 50 1m0s_A Ribose-5-phosphate isom  45.0      14 0.00059   15.9   7.1   64   94-163    53-122 (219)
 51 1mkz_A Molybdenum cofactor bio  44.9      14 0.00059   15.9   5.1   16   14-29      9-24  (172)
 52 1z7d_A Ornithine aminotransfer  44.6      14  0.0006   15.9   3.7   17  504-520   404-420 (433)
 53 2x4l_A Ferric-siderophore rece  43.3     5.1 0.00021   19.1   0.5   92   21-121    29-123 (325)
 54 1wwr_A TRNA adenosine deaminas  41.4      16 0.00067   15.6   6.6   84  416-505    29-119 (171)
 55 3e2v_A 3'-5'-exonuclease; stru  40.7      15 0.00063   15.7   2.6   47  321-367   250-300 (401)
 56 1y8a_A Hypothetical protein AF  40.4      15 0.00064   15.7   2.6   27  139-165   107-133 (332)
 57 1yo6_A Putative carbonyl reduc  39.4      17 0.00071   15.3   2.8   79   17-117     4-90  (250)
 58 2ip4_A PURD, phosphoribosylami  39.3      17 0.00071   15.3   4.2   19  252-270   181-199 (417)
 59 1qb7_A APRT, adenine phosphori  38.8     7.7 0.00033   17.8   0.9   26  284-313   140-165 (236)
 60 3ipw_A Hydrolase TATD family p  38.5      17 0.00072   15.3   2.6   30  143-172    58-88  (325)
 61 3civ_A Endo-beta-1,4-mannanase  38.1      18 0.00074   15.2   5.2   19   96-114    57-75  (343)
 62 1kid_A Groel (HSP60 class); ch  38.0      13 0.00055   16.2   1.9   98  343-462    75-183 (203)
 63 2pjk_A 178AA long hypothetical  37.8      18 0.00075   15.2   3.9   54    5-64      5-60  (178)
 64 2rbg_A Putative uncharacterize  37.7      18 0.00075   15.2   3.4   61   97-172    24-84  (126)
 65 2yw2_A Phosphoribosylamine--gl  36.6      19 0.00078   15.0   5.3   62   97-170   106-169 (424)
 66 1p3d_A UDP-N-acetylmuramate--a  36.5      19 0.00079   15.0   5.8   50   13-62     15-68  (475)
 67 1rh9_A Endo-beta-mannanase; en  36.3      19 0.00079   15.0   4.6   19   94-112    44-62  (373)
 68 1ve4_A ATP phosphoribosyltrans  35.9      10 0.00044   16.9   1.1   55   48-115    18-72  (206)
 69 2b82_A APHA, class B acid phos  35.6      16 0.00067   15.6   2.0   21  350-370    90-112 (211)
 70 3fuy_A HFX_CASS1, putative int  35.2     7.1  0.0003   18.1   0.2   60  430-491   105-173 (179)
 71 2f46_A Hypothetical protein; 7  34.9      20 0.00083   14.9   4.9   21  343-364    24-44  (156)
 72 1srv_A Protein (groel (HSP60 c  34.9      16 0.00065   15.6   1.9   28  343-370    57-87  (145)
 73 2vc7_A Aryldialkylphosphatase;  34.9      20 0.00083   14.9   4.4   10  409-418   295-304 (314)
 74 2xio_A Putative deoxyribonucle  32.9      11 0.00047   16.6   0.9   29  144-172    34-63  (301)
 75 3gxh_A Putative phosphatase (D  32.5      21  0.0009   14.6   5.1   78   79-175    17-97  (157)
 76 1zpv_A ACT domain protein; str  32.2      22 0.00091   14.6   5.2   30   18-47      5-37  (91)
 77 1wcw_A Uroporphyrinogen III sy  31.9      22 0.00092   14.5   8.0   70   87-173    12-81  (261)
 78 1vff_A Beta-glucosidase; glyco  31.9      14  0.0006   15.9   1.3   20  420-440   308-327 (423)
 79 1uqt_A Alpha, alpha-trehalose-  31.8      22 0.00092   14.5   3.1   39  320-359   332-374 (482)
 80 3ke8_A 4-hydroxy-3-methylbut-2  31.7      12 0.00049   16.5   0.8   31   72-110    38-68  (326)
 81 1u83_A Phosphosulfolactate syn  31.1      23 0.00095   14.4   4.7   33  287-320    68-100 (276)
 82 2g0w_A LMO2234 protein; putati  30.9      23 0.00096   14.4   2.7   67    4-70     13-94  (296)
 83 3jyv_I 40S ribosomal protein S  30.6      23 0.00097   14.4   2.4   21  444-464    65-85  (138)
 84 1o63_A ATP phosphoribosyltrans  30.4      12 0.00052   16.3   0.8   27  344-370   105-132 (219)
 85 1hxh_A 3BETA/17BETA-hydroxyste  30.0      14 0.00059   15.9   1.0   85   12-117     2-89  (253)
 86 3eag_A UDP-N-acetylmuramate:L-  29.8      24   0.001   14.3   6.6   47   15-61      3-54  (326)
 87 3dmy_A Protein FDRA; predicted  29.6      24   0.001   14.3   2.9   10  493-502   442-451 (480)
 88 1ydh_A AT5G11950; structural g  29.3      24   0.001   14.2   5.4   55    9-63      2-71  (216)
 89 1g2q_A Adenine phosphoribosylt  28.9      21 0.00088   14.7   1.7   22  150-171    26-48  (187)
 90 3hhe_A Ribose-5-phosphate isom  28.7      25   0.001   14.2   3.6   15  146-160   128-142 (255)
 91 2iya_A OLEI, oleandomycin glyc  28.5      25   0.001   14.1   6.1  102   17-119    13-120 (424)
 92 1j5w_A Glycyl-tRNA synthetase   28.3      18 0.00074   15.2   1.3   20  221-240    69-88  (298)
 93 3ju2_A Uncharacterized protein  27.8      26  0.0011   14.0   5.2   22   24-45     16-37  (284)
 94 3kg2_A Glutamate receptor 2; I  27.8      26  0.0011   14.0   6.5   88   19-118    39-133 (823)
 95 1k77_A EC1530, hypothetical pr  27.6      26  0.0011   14.0   5.2   17  262-278   153-169 (260)
 96 1ujp_A Tryptophan synthase alp  27.4      26  0.0011   14.0   4.3   18  267-286   190-207 (271)
 97 3dnf_A ISPH, LYTB, 4-hydroxy-3  27.3      16 0.00066   15.6   0.9   30   73-110    30-59  (297)
 98 2xij_A Methylmalonyl-COA mutas  27.3      26  0.0011   14.0   3.4  110  426-536   600-754 (762)
 99 2ji4_A Phosphoribosyl pyrophos  27.0      23 0.00099   14.3   1.7   64  426-506   268-331 (379)
100 1i60_A IOLI protein; beta barr  26.9      26  0.0011   13.9   3.2   22   23-44     10-31  (278)
101 3eoo_A Methylisocitrate lyase;  26.6      21  0.0009   14.6   1.4   22  272-293   102-123 (298)
102 3grp_A 3-oxoacyl-(acyl carrier  26.5      27  0.0011   13.9   2.6   84   13-118    24-111 (266)
103 1lk5_A D-ribose-5-phosphate is  26.4      27  0.0011   13.9   3.4   83   30-163    37-126 (229)
104 2zkq_i 40S ribosomal protein S  26.2      17 0.00072   15.3   0.9   22  444-465    73-94  (146)
105 1s2w_A Phosphoenolpyruvate pho  26.2      18 0.00075   15.2   1.0   34   32-65     11-47  (295)
106 1rd5_A Tryptophan synthase alp  26.1      27  0.0011   13.8   4.3   19  260-278    72-90  (262)
107 3dh1_A TRNA-specific adenosine  26.1      27  0.0011   13.8   5.7   70  434-504    51-127 (189)
108 1uj6_A Ribose 5-phosphate isom  25.8      28  0.0012   13.8   7.2   31  133-163    95-127 (227)
109 3ipc_A ABC transporter, substr  25.6      28  0.0012   13.8   6.9   16   29-44     58-73  (356)
110 2vqe_I 30S ribosomal protein S  25.5      18 0.00075   15.2   0.9   22  444-465    66-87  (128)
111 1tz9_A Mannonate dehydratase;   24.8      29  0.0012   13.7   2.1   69   75-150    38-107 (367)
112 3ofo_I 30S ribosomal protein S  24.8      19 0.00079   15.0   0.9   21  444-464    65-85  (127)
113 1z7m_E ATP phosphoribosyltrans  24.6      18 0.00077   15.1   0.8   15   48-62     14-28  (208)
114 1j6o_A TATD-related deoxyribon  24.4      24   0.001   14.2   1.4   52  102-170     7-61  (268)
115 3nav_A Tryptophan synthase alp  24.3      29  0.0012   13.6   5.1   99  268-368    34-156 (271)
116 3l49_A ABC sugar (ribose) tran  24.1      30  0.0012   13.6   3.9   15   98-115    28-42  (291)
117 1y5e_A Molybdenum cofactor bio  24.0      30  0.0012   13.6   4.5   16   12-27     10-25  (169)
118 2aee_A OPRT, oprtase, orotate   24.0      30  0.0013   13.6   2.4   25  284-312   119-143 (211)
119 2hmt_A YUAA protein; RCK, KTN,  23.9      30  0.0013   13.5   4.2   95   49-171    21-117 (144)
120 2iyf_A OLED, oleandomycin glyc  23.3      31  0.0013   13.5   6.2  101   17-120     9-116 (430)
121 2f8m_A Ribose 5-phosphate isom  22.8      26  0.0011   14.0   1.3   27   40-66     57-84  (244)
122 1q1g_A Uridine phosphorylase p  22.7      31  0.0013   13.4   5.2   50  418-467   189-244 (276)
123 3g40_A Na-K-CL cotransporter;   22.6      32  0.0013   13.4   1.9   33  338-370    81-119 (294)
124 3eme_A Rhodanese-like domain p  22.1      32  0.0014   13.3   2.5   18  353-370     9-26  (103)
125 1l1q_A Adenine phosphoribosylt  21.5      18 0.00074   15.2   0.2   15  487-501   159-173 (186)
126 1rrv_A Glycosyltransferase GTF  21.2      33  0.0014   13.2   5.4   47   18-64      2-54  (416)
127 1nh8_A ATP phosphoribosyltrans  21.0      24   0.001   14.3   0.8   14   48-61     35-48  (304)
128 3ngf_A AP endonuclease, family  20.6      34  0.0014   13.1   4.3   10   98-107    54-63  (269)
129 2yv2_A Succinyl-COA synthetase  20.3      35  0.0015   13.0   3.1   16  143-158    88-103 (297)
130 3guy_A Short-chain dehydrogena  20.2      35  0.0015   13.0   5.0   80   16-117     1-81  (230)
131 3h7a_A Short chain dehydrogena  20.1      35  0.0015   13.0   5.2   76   17-117     8-92  (252)
132 1t35_A Hypothetical protein YV  20.1      35  0.0015   13.0   3.9   36   29-64     22-64  (191)
133 3n0w_A ABC branched chain amin  20.1      35  0.0015   13.0   4.0   34   30-63     62-103 (379)

No 1  
>1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2 functional domains, IMPCH domain = alpha/beta/alpha; HET: G; 1.75A {Gallus gallus} SCOP: c.24.1.3 c.97.1.4 PDB: 1thz_A* 2b1g_A* 2b1i_A* 2iu0_A* 2iu3_A* 1m9n_A* 1oz0_A* 1pkx_A* 1p4r_A* 1pl0_A*
Probab=100.00  E-value=0  Score=1607.82  Aligned_cols=509  Identities=35%  Similarity=0.573  Sum_probs=470.2

Q ss_pred             CCEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             61369899875456869999999987999999427689999889951794653488165198553237155535533088
Q gi|254780664|r   14 IAVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRD   93 (536)
Q Consensus        14 ~~ikrALiSV~dKtgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~   93 (536)
                      .++|+|||||||||||++||+.|+++||||||||||+++|+++||||++|||+||||||||||||||||+||||||+| +
T Consensus         3 ~~~k~ALiSVsDKtgl~~la~~L~~~g~eiiSTGGTa~~L~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~IhgGILar-~   81 (593)
T 1g8m_A            3 ARQQLALLSVSEKAGLVEFARSLNALGLGLIASGGTATALRDAGLPVRDVSDLTGFPEMLGGRVKTLHPAVHAGILAR-N   81 (593)
T ss_dssp             -CCCEEEEEESCCTTHHHHHHHHHHTTCEEEECHHHHHHHHHTTCCCEEHHHHHSCCCBGGGTBSSCSHHHHHHHHCC-S
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHCCCEEEECCHHHHHHHHCCCCEEEHHHCCCCHHHHCCCCCCCCCHHHHHHHCC-C
T ss_conf             656569999745469899999999889889977079999998799668877504981650980555883540777059-9


Q ss_pred             CHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCC-CHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHC
Q ss_conf             9899999997799841499994888899731765-311232002334346999874015631353089998988987530
Q gi|254780664|r   94 NPAHMKFMQDHELESIDLVVVNLYPFEESFCRED-DYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDV  172 (536)
Q Consensus        94 ~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~-~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~el~~  172 (536)
                      +++|++++++|||++|||||||||||++|+++++ +++++|||||||||||||||||||++|+|||||+||+.++++|+.
T Consensus        82 ~~~~~~~l~~~~I~~IDlVvVNLYPF~~tv~~~~~~~~~~IEnIDIGGptmiRAAAKN~~~V~Vi~dp~dY~~vi~~l~~  161 (593)
T 1g8m_A           82 IPEDNADMNKQDFSLVRVVVCNLYPFVKTVSSPGVTVPEAVEKIDIGGVALLRAAAKNHARVTVVCDPADYSSVAKEMAA  161 (593)
T ss_dssp             SHHHHHHHHHTTCCCEEEEEEECCCHHHHHTSTTCCHHHHHTTCCSHHHHHHHHHHHTTTTCEEECCGGGHHHHHHHHHT
T ss_pred             CHHHHHHHHHCCCCCCCEEEEECCCHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHH
T ss_conf             87889999985999825799818885999736899989997751567888889987368875698133278999999987


Q ss_pred             C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCH
Q ss_conf             2-345666788999999999874228999987533101211344321012333343678810065057604776682101
Q gi|254780664|r  173 N-NGKIPYNFRKKMARQAFSRTASYDTAICRWLANAESENFPDYLNITAVKKQEMRYGENPHQKAALYSTPEKKSGIAHA  251 (536)
Q Consensus       173 ~-~g~~~~~~R~~lA~kAF~~ta~YD~~Ia~~l~~~~~~~~p~~~~~~~~~~~~LRYGENPHQ~Aa~Y~~~~~~~~~~~~  251 (536)
                      + +|++++++|++||.|||+|||+||++|++||.+....         ..+.++|||||||||+|++|.......+   +
T Consensus       162 ~~~g~~s~~~R~~lA~kAF~~Ta~YD~~Ia~~~~~~~~~---------~~~~~~LRYGENPHQ~Aa~y~~~~~~~~---~  229 (593)
T 1g8m_A          162 SKDKDTSVETRRHLALKAFTHTAQYDAAISDYFRKEYSK---------GVSQLPLRYGMNPHQSPAQLYTTRPKLP---L  229 (593)
T ss_dssp             STTSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCB---------TTTEEEESCSSSTTSCCEEEECSSSSCS---E
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------CCCCCCCCCCCCHHHHHHHHCCCCCCHH---H
T ss_conf             268998899999999999999877389998510131036---------6655666378884455365215686427---8


Q ss_pred             HHCCCCCCCCCCCCCCCHHHHHHHHCCC-CCCCEEEEECCCCCCCCCCCC--------------------HHHHHHHHHH
Q ss_conf             2105898883122212001167764245-567279996156865654520--------------------1689999998
Q gi|254780664|r  252 VLVQGKPLSYNNINDLDAAFELVSEFRS-QDCAACVIVKHMNPCGVATAD--------------------TLVEAYRRAL  310 (536)
Q Consensus       252 ~ql~GKeLSYNNllD~daA~~lv~ef~~-~~~Pa~vIvKH~NPCGvA~~~--------------------~~~~Ay~~A~  310 (536)
                      ++++||+ |||||+|+|+||+||+||.+ ...||||||||+||||||+|.                    ++..||++|+
T Consensus       230 ~~~~g~~-SYNN~lD~daA~~lv~ef~~~~~~Pa~vIvKH~NPCGvAig~~l~E~~~~~~~~~~~~~~~~~l~~Ay~~A~  308 (593)
T 1g8m_A          230 TVVNGSP-GFINLCDALNAWQLVKELKQALGIPAAASFKHVSPAGAAVGIPLSEEEAQVCMVHDLHKTLTPLASAYARSR  308 (593)
T ss_dssp             EEEESCC-CHHHHHHHHHHHHHHHHHHHHHCSCEEEEEETTEEEEEEECCCCCHHHHHHTTCTTTGGGCCHHHHHHHHHH
T ss_pred             HHHHCCC-CCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf             8863256-632356679999999976760599716773578872032064310333201101121124561999999987


Q ss_pred             HHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCEECCCCHHHHH
Q ss_conf             53321320045554275421457878865431111268798999885124553156316766777666402032102231
Q gi|254780664|r  311 SCDPISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDFHGEEIVLKTVSGGILV  390 (536)
Q Consensus       311 ~~DP~SAFGGIIa~N~~vd~~~A~~I~~~F~EvIiAP~f~~eAleiL~~KKnlRil~~~~~~~~~~~~~~~rsi~GG~Lv  390 (536)
                      +|||+||||||||||++||.++|+.|.+.|+||||||+|++|||+||++|||+|++++.....+.+..+++|++.||+|+
T Consensus       309 ~~DP~SAFGGIIA~N~~vd~~~A~~i~~~F~EvIIAP~f~~eALeiL~~KKNlR~l~~~~~~~~~~~~~~irsv~GG~Lv  388 (593)
T 1g8m_A          309 GADRMSSFGDFIALSDICDVPTAKIISREVSDGVVAPGYEEEALKILSKKKNGGYCVLQMDPNYEPDDNEIRTLYGLQLM  388 (593)
T ss_dssp             HSCTTTTTTEEEEESSCBCHHHHHHHHTSCEEEEEESCBCHHHHHHHHHGGGGTCEEEEECTTCCCCSEEEEEETTEEEE
T ss_pred             CCCCCHHCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCEEEEEEEEEE
T ss_conf             05960001778998231037888875210110002678898999987514553213330475567776736898651567


Q ss_pred             CCCCCC-CCCCCCC--CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             012334-5310001--2467778688988899999986005667799996893899729688889999999999876420
Q gi|254780664|r  391 QTRDNV-VDNKELT--VVTKRSPTDQELRDMKFAFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISA  467 (536)
Q Consensus       391 Q~~D~~-~~~~~~~--vVT~~~pt~~e~~dL~FA~kv~K~vkSNAIv~ak~~~tiGiGaGQ~sRVda~~iA~~KA~~~~~  467 (536)
                      |++|.. ++..+|+  ++|+++|+++|++||+|||+|||||||||||++||++|||||+||||||||++||++||++++.
T Consensus       389 Q~~d~~~~~~~~~~~vv~~~~~p~~~e~~DL~FAw~vvK~vKSNAIv~ak~~~tvGIGaGQ~sRVdsv~iA~~KA~~~~~  468 (593)
T 1g8m_A          389 QKRNNAVIDRSLFKNIVTKNKTLPESAVRDLIVASIAVKYTQSNSVCYAKDGQVIGIGAGQQSRIHCTRLAGDKANSWWL  468 (593)
T ss_dssp             EECCCCCCSGGGGCCBCSSSCCCCHHHHHHHHHHHHHHHTSCSSCEEEEETTEEEEEECSCSCHHHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             51455447978864222146898477899999999972547775799986997897678876657899999999755665


Q ss_pred             CCCC--------------------------------------------------------CCCCCCEEEEECCCCCCCCH
Q ss_conf             0122--------------------------------------------------------22348709997366868555
Q gi|254780664|r  468 QADV--------------------------------------------------------KSMTNGSVIASEAFYPFPDG  491 (536)
Q Consensus       468 ~~~~--------------------------------------------------------~~~~~g~vlaSDAFFPF~D~  491 (536)
                      +.++                                                        ..+++|+||||||||||+||
T Consensus       469 ~~~~~~l~~~~~~~~~r~~~~nai~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~g~vlASDAFFPF~D~  548 (593)
T 1g8m_A          469 RHHPRVLSMKFKAGVKRAEVSNAIDQYVTGTIGEDEDLVKWQAMFEEVPAQLTEAEKKQWIAKLTAVSLSSDAFFPFRDN  548 (593)
T ss_dssp             TTCHHHHTCEECTTCCHHHHHHHHHHHHHTCSCSTHHHHHHHTTEEECCCCCCHHHHHHHHTTCCCEEEEESSCCSSTHH
T ss_pred             HCCCHHHCCCHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCHH
T ss_conf             30602320110012003444334565411443310244555543013543100788876650358838982158787658


Q ss_pred             HHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCC
Q ss_conf             899997199599938987798899999987597799747854479
Q gi|254780664|r  492 IVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFTGIRHFRH  536 (536)
Q Consensus       492 ie~aa~~Gi~aIiqPGGSirD~evI~aan~~gi~m~fTg~RhF~H  536 (536)
                      ||.|+++||++||||||||||+|||++|||+||+|+|||.|||||
T Consensus       549 ie~a~~~GV~aIiQPGGSirD~evI~aan~~giaMvfTg~RhF~H  593 (593)
T 1g8m_A          549 VDRAKRIGVQFIVAPSGSAADEVVIEACNELGITLIHTNLRLFHH  593 (593)
T ss_dssp             HHHHHTTTEEEEEEECCCTTHHHHHHHHHHHTCEEEEESCCCCCC
T ss_pred             HHHHHHCCCEEEECCCCCCCCHHHHHHHHHHCCEEEECCCCCCCC
T ss_conf             999998399199879864360999999997398899868766388


No 2  
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4
Probab=100.00  E-value=0  Score=1488.74  Aligned_cols=458  Identities=38%  Similarity=0.590  Sum_probs=425.9

Q ss_pred             CCCCCCEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHH
Q ss_conf             86776136989987545686999999998799999942768999988995179465348816519855323715553553
Q gi|254780664|r   10 DHGEIAVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGIL   89 (536)
Q Consensus        10 ~~~~~~ikrALiSV~dKtgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL   89 (536)
                      ..++.|||||||||||||||++||+.|+++||||+|||||+++|+++||||++|||+||||||||||||||||+||||||
T Consensus         7 ~~~~~~ikrALiSVsdK~gl~~~a~~L~~~g~eiisTGGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~IhggiL   86 (464)
T 1zcz_A            7 HHHHHHMKRILVSLYEKEKYLDILRELHEKGWEIWASSGTAKFLKSNGIEANDVSTITGFENLLGGLVKTLHPEIFAGIL   86 (464)
T ss_dssp             ------CCEEEEECSSTGGGHHHHHHHHHTTCEEEECHHHHHHHHHTTCCCEEGGGGSCCCCGGGGTTTTCCHHHHHHHH
T ss_pred             CCCHHHCCEEEEEEECCCCHHHHHHHHHHCCCEEEECCHHHHHHHHCCCCEEEHHHCCCCCHHHCCCCCCCCCHHHHHHC
T ss_conf             21222326799999757598999999998898999872689999977996688886149717748832547805537651


Q ss_pred             HCCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHH
Q ss_conf             30889899999997799841499994888899731765311232002334346999874015631353089998988987
Q gi|254780664|r   90 SIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAE  169 (536)
Q Consensus        90 ~~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~e  169 (536)
                      +||+              .|||||||||||              ||||||||||||||||||++|+|+|||+||+.++++
T Consensus        87 ~~~~--------------~iDlVvvNLYPf--------------EnIDIGGpsmiRAAAKN~~~Vtvi~dp~~y~~~~~~  138 (464)
T 1zcz_A           87 GPEP--------------RWDVVFVDLYPP--------------PDIDIGGVALLRAAAKNWKKVKPAFDMETLKLAIEI  138 (464)
T ss_dssp             SSSC--------------SCSEEEECCCCT--------------TCCCSHHHHHHHHHHHTTTTCEEECSHHHHHHHHHC
T ss_pred             CCCC--------------CCCEEEECCCCC--------------CCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf             7888--------------878799817884--------------247977289999998737574346769999998852


Q ss_pred             HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf             53023456667889999999998742289999875331012113443210123333436788100650576047766821
Q gi|254780664|r  170 MDVNNGKIPYNFRKKMARQAFSRTASYDTAICRWLANAESENFPDYLNITAVKKQEMRYGENPHQKAALYSTPEKKSGIA  249 (536)
Q Consensus       170 l~~~~g~~~~~~R~~lA~kAF~~ta~YD~~Ia~~l~~~~~~~~p~~~~~~~~~~~~LRYGENPHQ~Aa~Y~~~~~~~~~~  249 (536)
                             ++++||++||.|||.|||+||++|++||.+.....+       ..+.++|||||||||+|++|..+.      
T Consensus       139 -------~~~~~R~~LA~kAF~~TA~YD~~Is~~f~~~~~~~~-------~~~~~~LRYGENPHQ~Aa~Y~~~~------  198 (464)
T 1zcz_A          139 -------DDEETRKYLAGMTFAFTSVYDSIRANQFVEGISLAF-------KREDLQLRYGENPHEKAFVYGKPA------  198 (464)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-------EEECCCCSCSSSTTSCEEEESCCS------
T ss_pred             -------CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH-------HHCCCCCCCCCCHHHCCEEECCCC------
T ss_conf             -------169999999999877654424525302011121134-------422467768999333180755431------


Q ss_pred             CHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCC
Q ss_conf             01210589888312221200116776424556727999615686565452016899999985332132004555427542
Q gi|254780664|r  250 HAVLVQGKPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVD  329 (536)
Q Consensus       250 ~~~ql~GKeLSYNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd  329 (536)
                      ...++|||+||||||+|+|+||+||+||.+   |+||||||+||||||+++++.+||++|++|||+||||||||||++||
T Consensus       199 ~~~~~qGKeLSYNNllDadaA~~lv~ef~~---pa~aIiKH~NPCGvA~~~~~~~Ay~~A~~~Dp~SAFGGIVA~N~~vd  275 (464)
T 1zcz_A          199 FEILHEGKTISFNNILDAENAWFMAKNLPR---MGAVVVKHQSPCGAAIGEDKVEIVKKAIEADDESSFGGILAVNFEMD  275 (464)
T ss_dssp             EEEECSSSCCCHHHHHHHHHHHHHHHTCSS---SEEEEEETTEEEEEEECSCHHHHHHHHHHHTTTTTTTEEEEESSCBC
T ss_pred             HHHHCCCCCCCCCCHHHHHHHHHHHHCCCC---CCEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCHH
T ss_conf             877526888771536628999864331367---72488625776545323440167840500699554460899777126


Q ss_pred             HHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCEECCCCHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             14578788654311112687989998851245531563167667776664020321022310123345310001246777
Q gi|254780664|r  330 QEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDFHGEEIVLKTVSGGILVQTRDNVVDNKELTVVTKRS  409 (536)
Q Consensus       330 ~~~A~~I~~~F~EvIiAP~f~~eAleiL~~KKnlRil~~~~~~~~~~~~~~~rsi~GG~LvQ~~D~~~~~~~~~vVT~~~  409 (536)
                      .++|++|++ |+||||||+|++|||++|++||++|+... .     ...++.+++.||+|+|++|.  +..+|++||+++
T Consensus       276 ~~~A~~I~~-F~EvIIAP~f~~eALeiL~kKk~~~l~~~-~-----~~~~~~~~~~gg~l~q~~d~--~~~~~~~vt~~~  346 (464)
T 1zcz_A          276 EEVAKSLKK-YLEVIVAPSFTQEAIEVLSKKKVRLLKPG-D-----YASWAGKMAFGSLVLSERKY--PEGNFELVVGEP  346 (464)
T ss_dssp             HHHHHHCCS-CEEEEECSCBCHHHHHHHTTSSCEEEEEC-C-----CCCEEEEEETTEEEEEECCC--CCSCCEEEESCC
T ss_pred             HHHHHHHHH-CEEEEECCCCCHHHHHHHHHCCCHHHCCC-C-----CCCHHHEECCCEEEECCCCC--CCCCCCEEECCC
T ss_conf             899999764-34999828989899999860172010235-5-----43310021145133002234--544331010578


Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCC
Q ss_conf             86889888999999860056677999968938997296888899999999998764200122223487099973668685
Q gi|254780664|r  410 PTDQELRDMKFAFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQADVKSMTNGSVIASEAFYPFP  489 (536)
Q Consensus       410 pt~~e~~dL~FA~kv~K~vkSNAIv~ak~~~tiGiGaGQ~sRVda~~iA~~KA~~~~~~~~~~~~~~g~vlaSDAFFPF~  489 (536)
                      |+++|++||+|||+|||||||||||++||++|||||+||||||||++||++||++         +++|+||||||||||+
T Consensus       347 pt~~e~~dL~FAwkv~K~vkSNAIv~akn~~tiGIGaGQ~sRvds~~iA~~kA~~---------~~~g~v~aSDAFFPF~  417 (464)
T 1zcz_A          347 LSEKELEDLEFAYRVVEGAKSNAVLIAKDGVTVGIGSGQPSRKRAAWIATVMAGE---------KAKGAVAASDAFFPFP  417 (464)
T ss_dssp             CCHHHHHHHHHHHHHHHHSCSSCEEEEETTEEEEEECSCSSHHHHHHHHHHHHGG---------GGTTCEEEESSCCSSH
T ss_pred             CCHHHHCCCCHHHHHHCCCCCCCEEEEECCEEEEECCCCCCHHHHHHHHHHHHCC---------CCCCEEEEECCCCCCC
T ss_conf             8833314500588664535426489960986997588865779999999998353---------0278699956688875


Q ss_pred             CHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCC
Q ss_conf             55899997199599938987798899999987597799747854479
Q gi|254780664|r  490 DGIVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFTGIRHFRH  536 (536)
Q Consensus       490 D~ie~aa~~Gi~aIiqPGGSirD~evI~aan~~gi~m~fTg~RhF~H  536 (536)
                      ||||.|+++||++|||||||+||+|||++|||+||+|+|||.|||||
T Consensus       418 D~i~~aa~~Gv~~IiqPGGSirD~evI~aane~gi~m~fTg~RhF~H  464 (464)
T 1zcz_A          418 DSLEILAQAGVKAVVAPLGSIRDEEVIEKARELGITFYKAPSRVFRH  464 (464)
T ss_dssp             HHHHHHHHTTCCEEEECCCCTTHHHHHHHHHHHTCEEEECSSCCCCC
T ss_pred             HHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHCCEEEECCCCCCCC
T ss_conf             48999998399499879874251999999997497899868766178


No 3  
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=99.07  E-value=7.5e-10  Score=90.58  Aligned_cols=123  Identities=27%  Similarity=0.336  Sum_probs=84.2

Q ss_pred             CCCCCEEEEEEEE--ECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHH
Q ss_conf             6776136989987--54568699999999879999994276899998899517946534881651985532371555355
Q gi|254780664|r   11 HGEIAVKTALISV--HNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGI   88 (536)
Q Consensus        11 ~~~~~ikrALiSV--~dKtgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggI   88 (536)
                      .-++|-|..||||  +||..+.++|+.|.++||+|++|+||+++|+++||+|+.|.....     +|| ++-.|      
T Consensus        19 g~~lP~kgvliSv~d~dK~~~~~~a~~L~~lGf~i~AT~GTa~~L~~~gi~~~~V~~~~~-----~~~-~~~~~------   86 (143)
T 2yvq_A           19 GFKIPQKGILIGIQQSFRPRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQ-----EGQ-NPSLS------   86 (143)
T ss_dssp             SCCCCCSEEEEECCGGGHHHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGG-----C------CB------
T ss_pred             CCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCEEEEEEECC-----CCC-CCCCC------
T ss_conf             998899888999867637789999999997496789735899999975985189985213-----676-66743------


Q ss_pred             HHCCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHH
Q ss_conf             33088989999999779984149999488889973176531123200233434699987401563135308999898898
Q gi|254780664|r   89 LSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLA  168 (536)
Q Consensus        89 L~~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~  168 (536)
                              |..++-+.  ..|||| +|...-      +.   ..+.  |  | -+||-+|-.| +|.++|+++--..+++
T Consensus        87 --------~i~~~i~~--g~i~lV-INtp~~------~~---~~~~--d--g-~~IRR~Av~~-~Ip~~T~i~~A~~~v~  140 (143)
T 2yvq_A           87 --------SIRKLIRD--GSIDLV-INLPNN------NT---KFVH--D--N-YVIRRTAVDS-GIPLLTNFQVTKLFAE  140 (143)
T ss_dssp             --------CHHHHHHT--TSCCEE-EECCCC------CG---GGHH--H--H-HHHHHHHHHT-TCCEECSHHHHHHHHH
T ss_pred             --------CHHHHHHC--CCEEEE-EECCCC------CC---CCCC--C--H-HHHHHHHHHC-CCCEEECHHHHHHHHH
T ss_conf             --------39999875--975999-986789------97---6566--5--7-9999999975-9998868999999999


Q ss_pred             HHH
Q ss_conf             753
Q gi|254780664|r  169 EMD  171 (536)
Q Consensus       169 el~  171 (536)
                      .|+
T Consensus       141 ale  143 (143)
T 2yvq_A          141 AVQ  143 (143)
T ss_dssp             TCC
T ss_pred             HHC
T ss_conf             859


No 4  
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=98.72  E-value=2.1e-07  Score=72.78  Aligned_cols=183  Identities=23%  Similarity=0.241  Sum_probs=81.3

Q ss_pred             CCEEEEEE--ECCCHHHHHCCCC----CHHHHHHCCCCCC------HHHHHHHHCCCCCC---EEEECHHHHHHHHHHHH
Q ss_conf             84149999--4888899731765----3112320023343------46999874015631---35308999898898753
Q gi|254780664|r  107 ESIDLVVV--NLYPFEESFCRED----DYYTMVENIDIGG------PSMIRAAAKNHDYV---TILTNPQDYPLFLAEMD  171 (536)
Q Consensus       107 ~~IDlVvv--NLYPF~~~v~~~~----~~~~~IEnIDIGG------psmiRAAAKN~~~V---~Vi~dp~dY~~~~~el~  171 (536)
                      +.+|-|+|  --.||++......    .....=|-|=||-      --++||.--+....   ....+..+...++++|.
T Consensus       350 P~~dyv~vk~P~~~f~kf~~~~~~Lg~~mkS~Gevm~iGrtfeeA~~Ka~rsl~~~~~~~~~~~~~~~~~~~~~l~~~L~  429 (1073)
T 1a9x_A          350 PSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELK  429 (1073)
T ss_dssp             CBCSSEEEEEEECCGGGCTTSCCBCCSSCCCCEEEEEEESSHHHHHHHHHHHSSSSCSSSCCSSCTTCTTHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf             85884852578775656788776646510121014665488999999999865047567776555564000999999854


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHCC--------------CCHH-------------H-----
Q ss_conf             0234566678899999999987422899-----9987533101--------------2113-------------4-----
Q gi|254780664|r  172 VNNGKIPYNFRKKMARQAFSRTASYDTA-----ICRWLANAES--------------ENFP-------------D-----  214 (536)
Q Consensus       172 ~~~g~~~~~~R~~lA~kAF~~ta~YD~~-----Ia~~l~~~~~--------------~~~p-------------~-----  214 (536)
                      .-     ...|-..-..||..-..+|..     |..||-.+..              ..++             +     
T Consensus       430 ~p-----~~~ri~~i~eAlr~G~s~~ei~~~T~Id~wFl~~i~~iv~~e~~~~~~~~~~~~~~~l~~aK~~GFsD~~ia~  504 (1073)
T 1a9x_A          430 DA-----GADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNADFLRQLKRKGFADARLAK  504 (1073)
T ss_dssp             TC-----BTTHHHHHHHHHHTTBCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHTGGGCCHHHHHHHHHTTCCHHHHHH
T ss_pred             CC-----CCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHH
T ss_conf             89-----9358999999998699788888887869999999999999998652058666999999999881999899998


Q ss_pred             ----------------HHHHCCCCCCCCCCCCCCCCCCEEEECCCCCC---CC---CCHHHCCCCCCCCCCCCCC----C
Q ss_conf             ----------------43210123333436788100650576047766---82---1012105898883122212----0
Q gi|254780664|r  215 ----------------YLNITAVKKQEMRYGENPHQKAALYSTPEKKS---GI---AHAVLVQGKPLSYNNINDL----D  268 (536)
Q Consensus       215 ----------------~~~~~~~~~~~LRYGENPHQ~Aa~Y~~~~~~~---~~---~~~~ql~GKeLSYNNllD~----d  268 (536)
                                      .+...+ +.-+--=||=|-....+|+.-+...   +.   ...-+|.+.+   |-+-..    .
T Consensus       505 l~~~~~~~vr~~R~~~~i~p~y-k~VDtcAgEf~a~t~y~Ysty~~e~e~~~~~~~~kvivlGsGp---~RIGqgiEFDy  580 (1073)
T 1a9x_A          505 LAGVREAEIRKLRDQYDLHPVY-KRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLGGGP---NRIGQGIEFDY  580 (1073)
T ss_dssp             HTTSCHHHHHHHHHHTTCCCEE-EECCSBTTSSCCCCEEEEEESCSCCCCCCCSSSCEEEEECCCS---CBTTBCHHHHH
T ss_pred             HHCCCHHHHHHHHHHCCCCCEE-EECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCC---CCCCCCCCCCH
T ss_conf             7099899999999974997158-8514434433677647999668887667555788889988864---40466645355


Q ss_pred             HHHHHHHHCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf             01167764245567279996156865654520
Q gi|254780664|r  269 AAFELVSEFRSQDCAACVIVKHMNPCGVATAD  300 (536)
Q Consensus       269 aA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~  300 (536)
                      .+..++..|.+.+..  +|+=-+||--|++.-
T Consensus       581 ~~v~a~~~l~~~g~~--~imiN~NPeTVStd~  610 (1073)
T 1a9x_A          581 CCVHASLALREDGYE--TIMVNCNPETVSTDY  610 (1073)
T ss_dssp             HHHHHHHHHHHTTCE--EEEECCCTTSSTTST
T ss_pred             HHHHHHHHHHHCCCE--EEEECCCCCCCCCCC
T ss_conf             999999999977975--899427832111582


No 5  
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=98.06  E-value=5.6e-05  Score=55.16  Aligned_cols=119  Identities=23%  Similarity=0.320  Sum_probs=81.7

Q ss_pred             EEEEEEE-EECCCCHHHHHHHHHHC--CCEEEEEHHHHHHHHHC-CCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHC
Q ss_conf             3698998-75456869999999987--99999942768999988-99517946534881651985532371555355330
Q gi|254780664|r   16 VKTALIS-VHNKTGVVEFASRLLSR--GIKIISTGGTCQLLEEE-GIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSI   91 (536)
Q Consensus        16 ikrALiS-V~dKtgl~~la~~L~~~--g~~iisTgGTa~~l~~~-gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~   91 (536)
                      .+-|||. =.||..+++||+.+.++  ||+|++|+||+++|+++ |++|+.+-.                 ...||    
T Consensus        28 ~~iAlIAhD~dK~~lv~~ak~~~~lL~Gf~LvAT~GTa~~L~e~ggl~v~~v~~-----------------~~~gg----   86 (178)
T 1vmd_A           28 KRIALIAHDRRKRDLLEWVSFNLGTLSKHELYATGTTGALLQEKLGLKVHRLKS-----------------GPLGG----   86 (178)
T ss_dssp             CEEEEEECGGGHHHHHHHHHHSHHHHTTSEEEECHHHHHHHHHHHCCCCEECSC-----------------GGGTH----
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCEEEEEEE-----------------CCCCC----
T ss_conf             337898532774999999999999964974997053899998735974898640-----------------37888----


Q ss_pred             CCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHHH
Q ss_conf             88989999999779984149999488889973176531123200233434699987401563135308999898898753
Q gi|254780664|r   92 RDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMD  171 (536)
Q Consensus        92 r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~el~  171 (536)
                         ..++.++-..  ..||+||.=.-|...   +. ..      -|  |-.|.|+|-.  .+|.++|+.+-=..++..+.
T Consensus        87 ---~p~I~d~I~~--geI~lVINt~d~~~~---~~-~~------~D--~~~IRR~av~--~~IP~~Ttl~tA~a~i~ai~  147 (178)
T 1vmd_A           87 ---DQQIGAMIAE--GKIDVLIFFWDPLEP---QA-HD------VD--VKALIRIATV--YNIPVAITRSTADFLISSPL  147 (178)
T ss_dssp             ---HHHHHHHHHT--TSCCEEEEECCSSSC---CT-TS------CC--HHHHHHHHHH--TTCCEESSHHHHHHHHHSGG
T ss_pred             ---CCCHHHHHHC--CCCCEEEECCCCCCC---CC-CH------HH--HHHHHHHHHH--HCCCEEECHHHHHHHHHHHH
T ss_conf             ---8529999986--982189981699777---76-60------26--9999999998--49723546999999999897


Q ss_pred             CCC
Q ss_conf             023
Q gi|254780664|r  172 VNN  174 (536)
Q Consensus       172 ~~~  174 (536)
                      .+.
T Consensus       148 ~~~  150 (178)
T 1vmd_A          148 MND  150 (178)
T ss_dssp             GGS
T ss_pred             HCC
T ss_conf             467


No 6  
>1wo8_A Methylglyoxal synthase; structural genomics, riken structural genomics/proteomics initiative, RSGI, lyase; 1.70A {Thermus thermophilus HB8} SCOP: c.24.1.2
Probab=98.06  E-value=1e-05  Score=60.48  Aligned_cols=117  Identities=21%  Similarity=0.221  Sum_probs=80.4

Q ss_pred             EE-EEEEE-EECCCCHHHHHHHHHHC--CCEEEEEHHHHHHHHHC-CCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHH
Q ss_conf             36-98998-75456869999999987--99999942768999988-9951794653488165198553237155535533
Q gi|254780664|r   16 VK-TALIS-VHNKTGVVEFASRLLSR--GIKIISTGGTCQLLEEE-GIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILS   90 (536)
Q Consensus        16 ik-rALiS-V~dKtgl~~la~~L~~~--g~~iisTgGTa~~l~~~-gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~   90 (536)
                      || -|||. =+||..+++|++.+.+.  ||+|++|+||+++|+++ |++|+.|....   |              ||   
T Consensus         1 ~k~ialiAhD~dK~~l~~~a~~~~~ll~gf~i~AT~GTa~~L~~~~gi~v~~v~k~~---~--------------gg---   60 (126)
T 1wo8_A            1 MKALALIAHDAKKDEMVAFCLRHKDVLARYPLLATGTTGARIQEATGLAVERVLSGP---L--------------GG---   60 (126)
T ss_dssp             CCEEEEEECGGGHHHHHHHHHHTHHHHTTSCEEECHHHHHHHHHHHCCCCEECCCTT---T--------------TH---
T ss_pred             CCEEEEEEHHCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCEEEEEEECC---C--------------CC---
T ss_conf             954899830067699999999999997497599603299999983496489997458---8--------------99---


Q ss_pred             CCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHH
Q ss_conf             08898999999977998414999948888997317653112320023343469998740156313530899989889875
Q gi|254780664|r   91 IRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEM  170 (536)
Q Consensus        91 ~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~el  170 (536)
                          ..++.++-..  ..|||||.=-=|..     +.+.       +--|-.|.|+|..+  +|.++|+++-=..+++.|
T Consensus        61 ----~p~i~d~I~~--g~I~lVIn~~~~~~-----~~~~-------~~D~~~IRR~a~~~--~IP~~T~~~~A~a~v~al  120 (126)
T 1wo8_A           61 ----DLQIGARVAE--GKVLAVVFLQDPLT-----AKPH-------EPDVQALMRVCNVH--GVPLATNLVAAEALIAWI  120 (126)
T ss_dssp             ----HHHHHHHHHT--TCEEEEEEECCTTS-----CCTT-------HHHHHHHHHHHHHT--TCCEECSHHHHHHHHHHH
T ss_pred             ----CCCHHHHHHC--CCCCEEEEECCCCC-----CCCC-------CHHHHHHHHHHHHC--CCCEEECHHHHHHHHHHH
T ss_conf             ----9899999985--99778998069888-----8645-------00089999999973--998897899999999999


Q ss_pred             HC
Q ss_conf             30
Q gi|254780664|r  171 DV  172 (536)
Q Consensus       171 ~~  172 (536)
                      ++
T Consensus       121 ~~  122 (126)
T 1wo8_A          121 RK  122 (126)
T ss_dssp             HH
T ss_pred             HH
T ss_conf             82


No 7  
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=97.72  E-value=0.00028  Score=50.10  Aligned_cols=116  Identities=18%  Similarity=0.212  Sum_probs=74.6

Q ss_pred             EEEEE-EECCCCHHHHHHHHHHC--CCEEEEEHHHHHHHHHCCCC-EEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             98998-75456869999999987--99999942768999988995-1794653488165198553237155535533088
Q gi|254780664|r   18 TALIS-VHNKTGVVEFASRLLSR--GIKIISTGGTCQLLEEEGIP-VTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRD   93 (536)
Q Consensus        18 rALiS-V~dKtgl~~la~~L~~~--g~~iisTgGTa~~l~~~gi~-v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~   93 (536)
                      -|||. =.||..+++||+.+.++  ||+|++|+||+++|+++|+. ++.+-                 +.-.||      
T Consensus        14 I~LiahD~~K~~lv~~a~~~~~ll~Gf~L~AT~GTa~~L~~~g~~~~~~~~-----------------~~~~gg------   70 (152)
T 1b93_A           14 IALVAHDHCKQMLMSWVERHQPLLEQHVLYATGTTGNLISRATGMNVNAML-----------------SGPMGG------   70 (152)
T ss_dssp             EEEEECGGGHHHHHHHHHHTHHHHTTSEEEEETTHHHHHHHHHCCCCEEEC-----------------CGGGTH------
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCEEEEEE-----------------ECCCCC------
T ss_conf             999974177499999999999997497299742599999970796488876-----------------458787------


Q ss_pred             CHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHCC
Q ss_conf             98999999977998414999948888997317653112320023343469998740156313530899989889875302
Q gi|254780664|r   94 NPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVN  173 (536)
Q Consensus        94 ~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~el~~~  173 (536)
                       ..++.++=..  ..|||||-=.=|-.    ......      |  |-.|.|+|..  .+|.++|+++-=..+++.+...
T Consensus        71 -~p~i~d~I~~--g~IdlVIn~~~p~~----~~~~~~------D--~~~IRR~av~--~~IP~~T~~~tA~a~i~ai~~~  133 (152)
T 1b93_A           71 -DQQVGALISE--GKIDVLIFFWDPLN----AVPHDP------D--VKALLRLATV--WNIPVATNVATADFIIQSPHFN  133 (152)
T ss_dssp             -HHHHHHHHHT--TCCCEEEEECCTTS----CCTTHH------H--HHHHHHHHHH--TTCCEESSHHHHHHHHTSGGGG
T ss_pred             -HHHHHHHHHC--CCCCEEEEECCCCC----CCCCCC------H--HHHHHHHHHH--CCCCEEECHHHHHHHHHHHHHC
T ss_conf             -1239999985--99648998168988----754532------0--8999999998--1973675699999999979856


No 8  
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=94.68  E-value=0.078  Score=32.31  Aligned_cols=134  Identities=14%  Similarity=0.164  Sum_probs=76.7

Q ss_pred             EEEEEEECC---CCHHHHHHHHHHCCC-EEEEEHHHHHHHHHC-CCCEEEHHHHCCCCHHCC--CCCCCCCCHHHHHHHH
Q ss_conf             989987545---686999999998799-999942768999988-995179465348816519--8553237155535533
Q gi|254780664|r   18 TALISVHNK---TGVVEFASRLLSRGI-KIISTGGTCQLLEEE-GIPVTSVFDITKFPEIMG--GRVKTLHPKIYGGILS   90 (536)
Q Consensus        18 rALiSV~dK---tgl~~la~~L~~~g~-~iisTgGTa~~l~~~-gi~v~~Vs~~TgfpEil~--GRVKTLHP~I~ggIL~   90 (536)
                      +|=|.|++.   +++.+..+.+...++ =|||.|||+.+|+++ .+||.+|. +|+|. ||.  -+.|..+++|  |+..
T Consensus        38 ~a~i~v~~~~~edav~~~~~~~~~~~~DviISRG~ta~~Ir~~~~iPVVeI~-vs~~D-il~aL~~a~~~~~kI--avVg  113 (225)
T 2pju_A           38 LANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRLSVPVILIK-PSGYD-VLQFLAKAGKLTSSI--GVVT  113 (225)
T ss_dssp             TCEEEEECCCHHHHHHHHHHHTTTSCCSEEEEEHHHHHHHHTTCSSCEEEEC-CCHHH-HHHHHHHTTCTTSCE--EEEE
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCEEEEE-CCHHH-HHHHHHHHHHHCCCE--EEEE
T ss_conf             7569998274789999999998649986999685689999985899889970-78768-999999999758988--9993


Q ss_pred             CCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCC-CHHHHHHCCCCCCHHHHHHHHCCCCCCEEEE
Q ss_conf             0889899999997799841499994888899731765-3112320023343469998740156313530
Q gi|254780664|r   91 IRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCRED-DYYTMVENIDIGGPSMIRAAAKNHDYVTILT  158 (536)
Q Consensus        91 ~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~-~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~  158 (536)
                      -.+.....+.+.++  -.+++...-+.--++.-..=. -.++-++-| |||....+.|.+.--.-..+.
T Consensus       114 f~~~~~~~~~~~~l--l~~~i~~~~~~~~~e~~~~v~~l~~~G~~vV-VG~~~~~~~A~~~Gl~~vli~  179 (225)
T 2pju_A          114 YQETIPALVAFQKT--FNLRLDQRSYITEEDARGQINELKANGTEAV-VGAGLITDLAEEAGMTGIFIY  179 (225)
T ss_dssp             ESSCCHHHHHHHHH--HTCCEEEEEESSHHHHHHHHHHHHHTTCCEE-EESHHHHHHHHHTTSEEEESS
T ss_pred             CCCCCHHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHHCCCCEE-ECCHHHHHHHHHCCCCEEEEC
T ss_conf             76403699999999--6994499996688999999999998699799-988589999998499789975


No 9  
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=94.61  E-value=0.29  Score=28.18  Aligned_cols=104  Identities=19%  Similarity=0.182  Sum_probs=72.4

Q ss_pred             HHHHHHHHHCCCC----CEEEEEECCEEEEECC-----CCCC---------------HHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             9999998600566----7799996893899729-----6888---------------89999999999876420012222
Q gi|254780664|r  418 MKFAFKVVKHVKS----NAVVYAKDGRTVGIGS-----GQTS---------------RVDSTRFAAIKAHNISAQADVKS  473 (536)
Q Consensus       418 L~FA~kv~K~vkS----NAIv~ak~~~tiGiGa-----GQ~s---------------RVda~~iA~~KA~~~~~~~~~~~  473 (536)
                      |..|..+.+..+-    -.=||++++..|+.|-     |..+               -+.|-..|+.+|...+.      
T Consensus        46 M~lA~~~A~rS~~p~~~VGAVIV~~~~IIs~GyN~~~~g~~~~~~~~~~~~~~~~~~~iHAE~nAi~~a~~~~~------  119 (184)
T 2hvw_A           46 MANAELISKRSTCNRAYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKEGI------  119 (184)
T ss_dssp             HHHHHHHGGGCCCTTCCCEEEEEETTEEEEEEECEESTTSCCHHHHCCCEETTEECSEECHHHHHHHHHHHHTC------
T ss_pred             HHHHHHHHHHCCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHC------
T ss_conf             99999999746999998889999899699986378888788733215510012245534789988999976330------


Q ss_pred             CCCCEEEEECCCCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEE
Q ss_conf             3487099973668685558999971995999389877988999999875977997
Q gi|254780664|r  474 MTNGSVIASEAFYPFPDGIVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVF  528 (536)
Q Consensus       474 ~~~g~vlaSDAFFPF~D~ie~aa~~Gi~aIiqPGGSirD~evI~aan~~gi~m~f  528 (536)
                      .++|+.|..- .+|-+.+...+..+||+-||-.-.--.|+..++...++||..+-
T Consensus       120 ~~~gatLYvT-~ePC~~Ca~~Ii~aGIkrVVy~~~y~~~~~~~~~l~~~gIev~~  173 (184)
T 2hvw_A          120 SANNTEIYVT-HFPCINCTKALLQAGVKKITYNTAYRIHPFAIELMTQKEVEYVQ  173 (184)
T ss_dssp             CCTTEEEEEE-ECCCHHHHHHHHHHTEEEEEEEECCSCCHHHHHHHHHHTCEEEE
T ss_pred             CCCCCEEEEC-CCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEE
T ss_conf             3466227987-89859999999981989899770668980999999987998997


No 10 
>2q5c_A NTRC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=91.78  E-value=0.13  Score=30.80  Aligned_cols=130  Identities=15%  Similarity=0.176  Sum_probs=63.9

Q ss_pred             HHHHHHHHHCCCE-EEEEHHHHHHHHHC-CCCEEEHHHHCCCCHHCC--CCCCCCCCHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf             9999999987999-99942768999988-995179465348816519--8553237155535533088989999999779
Q gi|254780664|r   30 VEFASRLLSRGIK-IISTGGTCQLLEEE-GIPVTSVFDITKFPEIMG--GRVKTLHPKIYGGILSIRDNPAHMKFMQDHE  105 (536)
Q Consensus        30 ~~la~~L~~~g~~-iisTgGTa~~l~~~-gi~v~~Vs~~TgfpEil~--GRVKTLHP~I~ggIL~~r~~~~~~~~l~~~~  105 (536)
                      .++|+.|.+ |++ |||-||||++|+++ .+||.++. +|+|. ||.  -+.|-.+++|  |+..-.+.....+.+.++ 
T Consensus        42 ~~iA~~l~~-~~DVIISRGgTa~~Ir~~~~iPVVeI~-vs~~D-il~al~~a~~~~~ki--avvgf~~~~~~~~~i~~l-  115 (196)
T 2q5c_A           42 SKIAFGLQD-EVDAIISRGATSDYIKKSVSIPSISIK-VTRFD-TMRAVYNAKRFGNEL--ALIAYKHSIVDKHEIEAM-  115 (196)
T ss_dssp             HHHHHHHTT-TCSEEEEEHHHHHHHHTTCSSCEEEEC-CCHHH-HHHHHHHHGGGCSEE--EEEEESSCSSCHHHHHHH-
T ss_pred             HHHHHHHHC-CCCEEEECCHHHHHHHHHCCCCEEEEC-CCHHH-HHHHHHHHHHHCCCE--EEEECCCCCHHHHHHHHH-
T ss_conf             999997543-987999896589999982899779980-78879-999999999758978--999678501589999998-


Q ss_pred             CCCEEEEEEECCCHHHHHCCCC-CHHHHHHCCCCCCHHHHHHHHCCCC-CCEEEECHHHHHHHH
Q ss_conf             9841499994888899731765-3112320023343469998740156-313530899989889
Q gi|254780664|r  106 LESIDLVVVNLYPFEESFCRED-DYYTMVENIDIGGPSMIRAAAKNHD-YVTILTNPQDYPLFL  167 (536)
Q Consensus       106 i~~IDlVvvNLYPF~~~v~~~~-~~~~~IEnIDIGGpsmiRAAAKN~~-~V~Vi~dp~dY~~~~  167 (536)
                       -.+++...-+..-++.-..=. -.++-++-| |||....+.|.|.-- .+.+-+.++--...+
T Consensus       116 -l~~~i~~~~~~~~~e~~~~i~~l~~~G~~vv-VG~~~~~~~A~~~Gl~~ili~Sg~eSI~~Al  177 (196)
T 2q5c_A          116 -LGVKIKEFLFSSEDEITTLISKVKTENIKIV-VSGKTVTDEAIKQGLYGETINSGEESLRRAI  177 (196)
T ss_dssp             -HTCEEEEEEECSGGGHHHHHHHHHHTTCCEE-EECHHHHHHHHHTTCEEEECCCCHHHHHHHH
T ss_pred             -HCCCEEEEEECCHHHHHHHHHHHHHCCCCEE-ECCHHHHHHHHHCCCCEEEEECCHHHHHHHH
T ss_conf             -5995599996688999999999998699899-9987999999985997899965499999999


No 11 
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=86.93  E-value=0.62  Score=25.77  Aligned_cols=40  Identities=23%  Similarity=0.292  Sum_probs=29.6

Q ss_pred             CCCHHHHHHHCCCCE-EEECCCCCCHHHHHHHHHHCCCEEEEC
Q ss_conf             855589999719959-993898779889999998759779974
Q gi|254780664|r  488 FPDGIVEAIKAGVTA-VIQPGGSVRDSEAITVADQHGIAMVFT  529 (536)
Q Consensus       488 F~D~ie~aa~~Gi~a-IiqPGGSirD~evI~aan~~gi~m~fT  529 (536)
                      -++-++.+.+.|+++ ++|||  .+++|..+.|.++||..+.-
T Consensus        83 v~~~v~e~~~~g~~~v~~q~G--~~~~e~~~~a~~~Gi~vI~~  123 (140)
T 1iuk_A           83 LMDHLPEVLALRPGLVWLQSG--IRHPEFEKALKEAGIPVVAD  123 (140)
T ss_dssp             HTTTHHHHHHHCCSCEEECTT--CCCHHHHHHHHHTTCCEEES
T ss_pred             HHHHHHHHHHCCCCEEEECCC--CCCHHHHHHHHHCCCEEECC
T ss_conf             999999999629898998989--68999999999959979928


No 12 
>3ff4_A Uncharacterized protein; structural genomics, PSI- 2, protein structure initiative, midwest center for structural genomics; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=86.36  E-value=0.98  Score=24.33  Aligned_cols=38  Identities=16%  Similarity=0.243  Sum_probs=29.9

Q ss_pred             CCHHHHHHHCCCCE-EEECCCCCCHHHHHHHHHHCCCEEEE
Q ss_conf             55589999719959-99389877988999999875977997
Q gi|254780664|r  489 PDGIVEAIKAGVTA-VIQPGGSVRDSEAITVADQHGIAMVF  528 (536)
Q Consensus       489 ~D~ie~aa~~Gi~a-IiqPGGSirD~evI~aan~~gi~m~f  528 (536)
                      ++-++.+.+.|+++ ++|||+  -|+|..+.|.++||.++.
T Consensus        72 ~~~v~e~~~~g~k~vw~q~G~--~~e~~~~~a~~~Gi~vi~  110 (122)
T 3ff4_A           72 LSEYNYILSLKPKRVIFNPGT--ENEELEEILSENGIEPVI  110 (122)
T ss_dssp             GGGHHHHHHHCCSEEEECTTC--CCHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHCCCCEEEEECCC--CCHHHHHHHHHCCCEEEC
T ss_conf             999999985399999993698--799999999996997995


No 13 
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=85.19  E-value=0.86  Score=24.73  Aligned_cols=36  Identities=25%  Similarity=0.406  Sum_probs=25.1

Q ss_pred             CHHHHHHHCCCCEEE-ECCCCCCHHHHHHHHHHCCCEEE
Q ss_conf             558999971995999-38987798899999987597799
Q gi|254780664|r  490 DGIVEAIKAGVTAVI-QPGGSVRDSEAITVADQHGIAMV  527 (536)
Q Consensus       490 D~ie~aa~~Gi~aIi-qPGGSirD~evI~aan~~gi~m~  527 (536)
                      |-++.+.+.|++.++ |||+  .++|..+.|.++||.++
T Consensus        84 ~il~e~~~~g~k~v~~q~G~--~~~e~~~~a~~~Gi~vi  120 (138)
T 1y81_A           84 QVAKEAVEAGFKKLWFQPGA--ESEEIRRFLEKAGVEYS  120 (138)
T ss_dssp             HHHHHHHHTTCCEEEECTTS--CCHHHHHHHHHHTCEEE
T ss_pred             HHHHHHHHCCCCEEEEECCH--HHHHHHHHHHHCCCEEE
T ss_conf             99999975699978960764--41999999998499899


No 14 
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.65A {Pyrococcus horikoshii OT3} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X*
Probab=84.82  E-value=0.97  Score=24.38  Aligned_cols=38  Identities=29%  Similarity=0.313  Sum_probs=29.4

Q ss_pred             CCHHHHHHHCCCCE-EEECCCCCCHHHHHHHHHHCCCEEEE
Q ss_conf             55589999719959-99389877988999999875977997
Q gi|254780664|r  489 PDGIVEAIKAGVTA-VIQPGGSVRDSEAITVADQHGIAMVF  528 (536)
Q Consensus       489 ~D~ie~aa~~Gi~a-IiqPGGSirD~evI~aan~~gi~m~f  528 (536)
                      ++-++.+.+.|+++ ++||||.  ++|..+.|.++||.++-
T Consensus        91 ~~il~~~~~~g~k~v~~~~g~~--~ee~~~~a~~~gi~~v~  129 (144)
T 2d59_A           91 MEYVEQAIKKGAKVVWFQYNTY--NREASKKADEAGLIIVA  129 (144)
T ss_dssp             HHHHHHHHHHTCSEEEECTTCC--CHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHCCCCEEEEECCCC--CHHHHHHHHHCCCEEEC
T ss_conf             9999999975999999824644--99999999996995790


No 15 
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=82.44  E-value=1.7  Score=22.52  Aligned_cols=84  Identities=14%  Similarity=0.136  Sum_probs=43.1

Q ss_pred             CCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHE
Q ss_conf             12001167764245567279996156865654520168999999853321320045554275421457878865431111
Q gi|254780664|r  266 DLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAKEVIKVFTEAII  345 (536)
Q Consensus       266 D~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~I~~~F~EvIi  345 (536)
                      |.+-+..++..+-+.+.+ ++=|-=++|+.    ....++..+.+.-+      -+|+.-..+|.+.++...+-=.+-++
T Consensus        17 ~~~~a~~~a~al~~~Gi~-~iEitl~tp~a----~~~i~~l~~~~~~~------~~vGaGTV~~~~~~~~a~~aGA~Fiv   85 (212)
T 2v82_A           17 TPDEALAHVGAVIDAGFD-AVEIPLNSPQW----EQSIPAIVDAYGDK------ALIGAGTVLKPEQVDALARMGCQLIV   85 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCC-EEEEETTSTTH----HHHHHHHHHHHTTT------SEEEEECCCSHHHHHHHHHTTCCEEE
T ss_pred             CHHHHHHHHHHHHHCCCC-EEEEECCCCCH----HHHHHHHHHHCCCC------CEEEEECCCCHHHHHHHHHCCCCEEE
T ss_conf             999999999999986999-89995799349----99999999966875------07853022247889999854897898


Q ss_pred             ECCCCHHHHHHHHCC
Q ss_conf             268798999885124
Q gi|254780664|r  346 APTLSEEAADVLAKK  360 (536)
Q Consensus       346 AP~f~~eAleiL~~K  360 (536)
                      .|+++++-++..++.
T Consensus        86 sP~~~~~v~~~a~~~  100 (212)
T 2v82_A           86 TPNIHSEVIRRAVGY  100 (212)
T ss_dssp             CSSCCHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHC
T ss_conf             998998999999975


No 16 
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=81.93  E-value=1.5  Score=22.95  Aligned_cols=39  Identities=23%  Similarity=0.325  Sum_probs=21.9

Q ss_pred             EEEECCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHC
Q ss_conf             555427542145787886543111126879899988512
Q gi|254780664|r  321 IIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAK  359 (536)
Q Consensus       321 IIa~N~~vd~~~A~~I~~~F~EvIiAP~f~~eAleiL~~  359 (536)
                      +|..-.-+|.+.++...+.=.+-++.|+++++-++...+
T Consensus        64 ~vGaGTV~~~~~~~~a~~aGa~fivsP~~~~~v~~~~~~  102 (205)
T 1wa3_A           64 IIGAGTVTSVEQCRKAVESGAEFIVSPHLDEEISQFCKE  102 (205)
T ss_dssp             EEEEESCCSHHHHHHHHHHTCSEEECSSCCHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHH
T ss_conf             896300012788999986487488679999999999998


No 17 
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=81.92  E-value=1.2  Score=23.63  Aligned_cols=89  Identities=11%  Similarity=0.128  Sum_probs=55.2

Q ss_pred             CCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf             83122212001167764245567279996156865654520168999999853321320045554275421457878865
Q gi|254780664|r  260 SYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAKEVIKV  339 (536)
Q Consensus       260 SYNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~I~~~  339 (536)
                      .-....|.+.+..++.-+.+.+.+. +=|--++|+.       .++.+...+--|    .-+|..-.-+|.+.++...+.
T Consensus        21 pvlr~~~~~~~~~~~~al~~~Gi~~-iEITl~t~~a-------~~~i~~l~~~~p----~~~vGaGTVl~~~~~~~a~~a   88 (224)
T 1vhc_A           21 PVIALDNADDILPLADTLAKNGLSV-AEITFRSEAA-------ADAIRLLRANRP----DFLIAAGTVLTAEQVVLAKSS   88 (224)
T ss_dssp             EEECCSSGGGHHHHHHHHHHTTCCE-EEEETTSTTH-------HHHHHHHHHHCT----TCEEEEESCCSHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHCCCCE-EEEECCCCHH-------HHHHHHHHHHCC----CEEEEEECCCCHHHHHHHHHH
T ss_conf             9996899999999999999879988-9996898039-------999999998689----918962020457999999983


Q ss_pred             HHHHHEECCCCHHHHHHHHCC
Q ss_conf             431111268798999885124
Q gi|254780664|r  340 FTEAIIAPTLSEEAADVLAKK  360 (536)
Q Consensus       340 F~EvIiAP~f~~eAleiL~~K  360 (536)
                      =.+-++.|+++++-++...+.
T Consensus        89 GA~FivSP~~~~~v~~~a~~~  109 (224)
T 1vhc_A           89 GADFVVTPGLNPKIVKLCQDL  109 (224)
T ss_dssp             TCSEEECSSCCHHHHHHHHHT
T ss_pred             CCCEEECCCCCHHHHHHHHHC
T ss_conf             799897278999999999856


No 18 
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta- barrel, lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=81.13  E-value=0.94  Score=24.45  Aligned_cols=92  Identities=11%  Similarity=0.094  Sum_probs=51.5

Q ss_pred             CCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHH
Q ss_conf             98883122212001167764245567279996156865654520168999999853321320045554275421457878
Q gi|254780664|r  257 KPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAKEV  336 (536)
Q Consensus       257 KeLSYNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~I  336 (536)
                      |-+.-..+.|.+-+..++.-+-+.+.+ ++=|--++|.       -.++.+...+--|    .=+|..-.-+|.+.++..
T Consensus        27 ~iipvi~~~~~~~a~~~a~al~~~Gi~-~iEitl~tp~-------a~e~i~~l~~~~p----~~~iGaGTV~~~~~~~~a   94 (225)
T 1mxs_A           27 RILPVITIAREEDILPLADALAAGGIR-TLEVTLRSQH-------GLKAIQVLREQRP----ELCVGAGTVLDRSMFAAV   94 (225)
T ss_dssp             SEEEEECCSCGGGHHHHHHHHHHTTCC-EEEEESSSTH-------HHHHHHHHHHHCT----TSEEEEECCCSHHHHHHH
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCC-EEEEECCCCH-------HHHHHHHHHHHCC----CCEEEEEECCCHHHHHHH
T ss_conf             878999759999999999999987998-8999589940-------9999999997499----707865303679999999


Q ss_pred             HHHHHHHHEECCCCHHHHHHHHCC
Q ss_conf             865431111268798999885124
Q gi|254780664|r  337 IKVFTEAIIAPTLSEEAADVLAKK  360 (536)
Q Consensus       337 ~~~F~EvIiAP~f~~eAleiL~~K  360 (536)
                      .+-=.+-++.|+|+++-++.-+++
T Consensus        95 ~~aGa~FivsP~~~~~v~~~a~~~  118 (225)
T 1mxs_A           95 EAAGAQFVVTPGITEDILEAGVDS  118 (225)
T ss_dssp             HHHTCSSEECSSCCHHHHHHHHHC
T ss_pred             HHCCCCEEECCCCCHHHHHHHHHC
T ss_conf             977998998898959999999865


No 19 
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus HB8} PDB: 2yw4_A
Probab=80.81  E-value=1.3  Score=23.37  Aligned_cols=86  Identities=12%  Similarity=0.139  Sum_probs=56.2

Q ss_pred             CCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf             31222120011677642455672799961568656545201689999998533213200455542754214578788654
Q gi|254780664|r  261 YNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAKEVIKVF  340 (536)
Q Consensus       261 YNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~I~~~F  340 (536)
                      -....|.+.+..++.-+.+.+.+ +.=|--++|+       -.++.++...  |    +=+|..-.-+|.+.++...+-=
T Consensus        18 vlr~~~~~~a~~~~~al~~~Gi~-~iEitl~tp~-------a~~~i~~l~~--~----~~~iGaGTV~~~~~~~~a~~aG   83 (207)
T 2yw3_A           18 LLTVRGGEDLLGLARVLEEEGVG-ALEITLRTEK-------GLEALKALRK--S----GLLLGAGTVRSPKEAEAALEAG   83 (207)
T ss_dssp             EECCCSCCCHHHHHHHHHHTTCC-EEEEECSSTH-------HHHHHHHHTT--S----SCEEEEESCCSHHHHHHHHHHT
T ss_pred             EEECCCHHHHHHHHHHHHHCCCC-EEEEECCCCH-------HHHHHHHHCC--C----CCEEEEHHCCCHHHHHHHHHCC
T ss_conf             99689999999999999987998-8999689922-------9999998545--7----8589311205778999999809


Q ss_pred             HHHHEECCCCHHHHHHHHCC
Q ss_conf             31111268798999885124
Q gi|254780664|r  341 TEAIIAPTLSEEAADVLAKK  360 (536)
Q Consensus       341 ~EvIiAP~f~~eAleiL~~K  360 (536)
                      .+-++.|+++++-++..+++
T Consensus        84 a~FivSP~~~~~v~~~a~~~  103 (207)
T 2yw3_A           84 AAFLVSPGLLEEVAALAQAR  103 (207)
T ss_dssp             CSEEEESSCCHHHHHHHHHH
T ss_pred             CCEEECCCCCHHHHHHHHHC
T ss_conf             99898588869999999962


No 20 
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=78.85  E-value=1.5  Score=22.99  Aligned_cols=94  Identities=17%  Similarity=0.219  Sum_probs=61.4

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHH
Q ss_conf             58988831222120011677642455672799961568656545201689999998533213200455542754214578
Q gi|254780664|r  255 QGKPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAK  334 (536)
Q Consensus       255 ~GKeLSYNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~  334 (536)
                      +++-+---...|.+.|..++.-+.+.+.+ ++=|--++|..       .++.+...+.-|-    =+|..-.-+|.+.++
T Consensus        15 ~~~iipvir~~~~~~a~~i~~al~~~Gi~-~iEItl~tp~a-------~~~i~~l~~~~p~----~~iGaGTV~~~e~~~   82 (214)
T 1wbh_A           15 TGPVVPVIVVKKLEHAVPMAKALVAGGVR-VLNVTLRTECA-------VDAIRAIAKEVPE----AIVGAGTVLNPQQLA   82 (214)
T ss_dssp             SCSEEEEECCSSGGGHHHHHHHHHHTTCC-EEEEESCSTTH-------HHHHHHHHHHCTT----SEEEEESCCSHHHHH
T ss_pred             HCCEEEEEECCCHHHHHHHHHHHHHCCCC-EEEEECCCHHH-------HHHHHHHHHHCCC----CEEEECCCCCHHHHH
T ss_conf             49989999789999999999999987998-89993798679-------9999999987899----679524545368999


Q ss_pred             HHHHHHHHHHEECCCCHHHHHHHHCC
Q ss_conf             78865431111268798999885124
Q gi|254780664|r  335 EVIKVFTEAIIAPTLSEEAADVLAKK  360 (536)
Q Consensus       335 ~I~~~F~EvIiAP~f~~eAleiL~~K  360 (536)
                      ...+.=.+-++.|+|+++-++..+++
T Consensus        83 ~a~~aGa~FivsP~~~~~v~~~a~~~  108 (214)
T 1wbh_A           83 EVTEAGAQFAISPGLTEPLLKAATEG  108 (214)
T ss_dssp             HHHHHTCSCEEESSCCHHHHHHHHHS
T ss_pred             HHHHCCCCEEECCCCCHHHHHHHHHC
T ss_conf             99981998998589999999999854


No 21 
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=75.56  E-value=4.2  Score=19.77  Aligned_cols=17  Identities=12%  Similarity=-0.068  Sum_probs=8.8

Q ss_pred             EEEECHHHHHHHHHHHH
Q ss_conf             35308999898898753
Q gi|254780664|r  155 TILTNPQDYPLFLAEMD  171 (536)
Q Consensus       155 ~Vi~dp~dY~~~~~el~  171 (536)
                      .|.|+++--..+++.+.
T Consensus        88 ivFTS~ngV~~f~~~l~  104 (286)
T 3d8t_A           88 FLATTGVGVRDLLEAGK  104 (286)
T ss_dssp             EEECCHHHHHHHHHHHH
T ss_pred             EEEECHHHHHHHHHHHH
T ss_conf             99968689999999999


No 22 
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrolase/RNA complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=75.46  E-value=3.4  Score=20.43  Aligned_cols=66  Identities=11%  Similarity=0.138  Sum_probs=24.6

Q ss_pred             EEEECCEEEEECCCCCC-----HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCEEE
Q ss_conf             99968938997296888-----899999999998764200122223487099973668685558999971995999
Q gi|254780664|r  434 VYAKDGRTVGIGSGQTS-----RVDSTRFAAIKAHNISAQADVKSMTNGSVIASEAFYPFPDGIVEAIKAGVTAVI  504 (536)
Q Consensus       434 v~ak~~~tiGiGaGQ~s-----RVda~~iA~~KA~~~~~~~~~~~~~~g~vlaSDAFFPF~D~ie~aa~~Gi~aIi  504 (536)
                      |++++++.|+.|..|.+     ...|...|+.+|......    ..+.|+.+.+ -.-|-+=+...+..+||+-||
T Consensus        32 ViV~~~~ii~~g~~~~~~~~~~~~HAE~~ai~~a~~~~~~----~~l~~~tly~-t~EPC~mC~~ai~~agI~~Vv  102 (159)
T 2b3j_A           32 IITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGS----WRLEGCTLYV-TLEPCVMCAGTIVMSRIPRVV  102 (159)
T ss_dssp             EEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTS----SCCTTEEEEE-EECCCHHHHHHHHHTTCSEEE
T ss_pred             EEEECCEEEEEEECCEECCCCHHHHHHHHHHHHHHHHHCC----CCCCCCEEEE-CCCCCHHHHHHHHHHCCCEEE
T ss_conf             9986993898762310058863358999999999998388----7778855740-379968999999996999899


No 23 
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=73.87  E-value=1.7  Score=22.54  Aligned_cols=45  Identities=22%  Similarity=0.369  Sum_probs=32.5

Q ss_pred             CHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCC
Q ss_conf             5589999719-95999389877988999999875977997478544
Q gi|254780664|r  490 DGIVEAIKAG-VTAVIQPGGSVRDSEAITVADQHGIAMVFTGIRHF  534 (536)
Q Consensus       490 D~ie~aa~~G-i~aIiqPGGSirD~evI~aan~~gi~m~fTg~RhF  534 (536)
                      |.+..|.+.| +.+||=.||.-=+++|++.|.+.|++++-|..-.|
T Consensus        64 di~l~al~~~~~a~lIlTg~~~p~~~vl~la~~~gipvi~t~~dT~  109 (139)
T 2ioj_A           64 DLLLTALEMPNVRCLILTGNLEPVQLVLTKAEERGVPVILTGHDTL  109 (139)
T ss_dssp             HHHHHHTTCTTEEEEEEETTCCCCHHHHHHHHHHTCCEEECSSCHH
T ss_pred             HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCHH
T ss_conf             8999998578963999939999789999999876994899478799


No 24 
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica}
Probab=73.05  E-value=1.5  Score=22.99  Aligned_cols=89  Identities=16%  Similarity=0.167  Sum_probs=56.8

Q ss_pred             CCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf             83122212001167764245567279996156865654520168999999853321320045554275421457878865
Q gi|254780664|r  260 SYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAKEVIKV  339 (536)
Q Consensus       260 SYNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~I~~~  339 (536)
                      .-....|.+.+..++.-+.+.+.+. +=|--++|-.       .++.+...+--|    .-+|..-.-+|.+.++...+.
T Consensus        17 pvir~~~~~~~~~i~~aL~~~Gi~~-iEitl~~~~a-------~~~i~~l~~~~p----~~~vGaGTV~~~~~~~~a~~a   84 (217)
T 3lab_A           17 PVIVIDDLVHAIPMAKALVAGGVHL-LEVTLRTEAG-------LAAISAIKKAVP----EAIVGAGTVCTADDFQKAIDA   84 (217)
T ss_dssp             EEECCSCGGGHHHHHHHHHHTTCCE-EEEETTSTTH-------HHHHHHHHHHCT----TSEEEEECCCSHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHCCCCE-EEEECCCCHH-------HHHHHHHHHHCC----CCEEEEEECCCHHHHHHHHHH
T ss_conf             9996899999999999999879988-9996899069-------999999998689----975999962427999999972


Q ss_pred             HHHHHEECCCCHHHHHHHHCC
Q ss_conf             431111268798999885124
Q gi|254780664|r  340 FTEAIIAPTLSEEAADVLAKK  360 (536)
Q Consensus       340 F~EvIiAP~f~~eAleiL~~K  360 (536)
                      =.+-++.|.++++-++..++.
T Consensus        85 GA~FivsP~~~~~v~~~a~~~  105 (217)
T 3lab_A           85 GAQFIVSPGLTPELIEKAKQV  105 (217)
T ss_dssp             TCSEEEESSCCHHHHHHHHHH
T ss_pred             CCCEEECCCCCHHHHHHHHHC
T ss_conf             788877688999999999984


No 25 
>3iaa_A CALG2; glycosyltransferase, calicheamicin, TDP, enediyne, TR; HET: TYD; 2.50A {Micromonospora echinospora}
Probab=71.51  E-value=5.1  Score=19.11  Aligned_cols=114  Identities=17%  Similarity=0.187  Sum_probs=63.7

Q ss_pred             CCCCCCCCCCCEEEEEEEEECCCC----HHHHHHHHHHCCCEE--EEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCC
Q ss_conf             157788677613698998754568----699999999879999--99427689999889951794653488165198553
Q gi|254780664|r    5 HRKDGDHGEIAVKTALISVHNKTG----VVEFASRLLSRGIKI--ISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVK   78 (536)
Q Consensus         5 ~~~~~~~~~~~ikrALiSV~dKtg----l~~la~~L~~~g~~i--isTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVK   78 (536)
                      |.+.|..-...|++.|+-.+---|    ...+|+.|.+.|.++  ++++.-...+.+.|+++..+.+.  .++.-..+..
T Consensus         9 ~~~~~~~~~~~m~~il~~~~~~~GH~~p~l~la~~L~~rGH~V~v~t~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~   86 (416)
T 3iaa_A            9 HHSSGHIEGRHMAHLLIVNVASHGLILPTLTVVTELVRRGHRVSYVTAGGFAEPVRAAGATVVPYQSE--IIDADAAEVF   86 (416)
T ss_dssp             -----------CCEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCEEEECCCS--GGGCCHHHHH
T ss_pred             CCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCEEEECCCC--CCCCCCHHCC
T ss_conf             45677865369980899779956379999999999997889899996823677898679879972776--5653301103


Q ss_pred             CCCCHHHHHHH--HCCCCHHHHHHHHHCCCCCEEEEEEECCCHH
Q ss_conf             23715553553--3088989999999779984149999488889
Q gi|254780664|r   79 TLHPKIYGGIL--SIRDNPAHMKFMQDHELESIDLVVVNLYPFE  120 (536)
Q Consensus        79 TLHP~I~ggIL--~~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~  120 (536)
                      ..+...-...+  .+..........+...-...|+|++..+++.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pDvv~~~~~~~~  130 (416)
T 3iaa_A           87 GSDDLGVRPHLMYLRENVSVLRATAEALDGDVPDLVLYDDFPFI  130 (416)
T ss_dssp             HSCSSCHHHHHHHHHHHHHHHHHHHHHHTTSCCSEEEEESTTHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCH
T ss_conf             65431134689999999999999999972689818998264302


No 26 
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=68.40  E-value=5.9  Score=18.65  Aligned_cols=106  Identities=20%  Similarity=0.201  Sum_probs=56.2

Q ss_pred             CEEEEEEEEECCCC----HHHHHHHHHHCCCEE--EEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHH
Q ss_conf             13698998754568----699999999879999--994276899998899517946534881651985532371555355
Q gi|254780664|r   15 AVKTALISVHNKTG----VVEFASRLLSRGIKI--ISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGI   88 (536)
Q Consensus        15 ~ikrALiSV~dKtg----l~~la~~L~~~g~~i--isTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggI   88 (536)
                      +-++-|+.-+--.|    ...+|+.|.+.|.++  ++++.....++..|+++..+........+.++ .+..........
T Consensus         3 ~~~~il~~~~~g~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   81 (402)
T 3ia7_A            3 RQRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKAAGAEVVLYKSEFDTFHVPEV-VKQEDAETQLHL   81 (402)
T ss_dssp             CCCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHTTCEEEECCCGGGTSSSSSS-SCCTTHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCEEEECCCCCCCCCCCCC-CCCCCCHHHHHH
T ss_conf             9998999899846479999999999998889899997810666888669868973776442345432-233442156789


Q ss_pred             HHCCCCHHHHHH-HHHCCCCCEEEEEEECCCHHH
Q ss_conf             330889899999-997799841499994888899
Q gi|254780664|r   89 LSIRDNPAHMKF-MQDHELESIDLVVVNLYPFEE  121 (536)
Q Consensus        89 L~~r~~~~~~~~-l~~~~i~~IDlVvvNLYPF~~  121 (536)
                      ...+....-... .+.+.-...|+|+.+.+|+.-
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~~~~  115 (402)
T 3ia7_A           82 VYVRENVAILRAAEEALGDNPPDLVVYDVFPFIA  115 (402)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCSEEEEESTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHH
T ss_conf             9999999999999998743498689626740027


No 27 
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=68.33  E-value=5.4  Score=18.92  Aligned_cols=37  Identities=24%  Similarity=0.305  Sum_probs=18.6

Q ss_pred             CHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEE
Q ss_conf             55899997199599938987798899999987597799
Q gi|254780664|r  490 DGIVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMV  527 (536)
Q Consensus       490 D~ie~aa~~Gi~aIiqPGGSirD~evI~aan~~gi~m~  527 (536)
                      +-++.+.+.|++.+.--+|+ .++++.+.|.++||..+
T Consensus        85 ~~~~~~~~~g~k~v~~q~g~-~~~~~~~~a~~~Gi~vi  121 (145)
T 2duw_A           85 GVAQEAIAIGAKTLWLQLGV-INEQAAVLAREAGLSVV  121 (145)
T ss_dssp             HHHHHHHHHTCCEEECCTTC-CCHHHHHHHHTTTCEEE
T ss_pred             HHHHHHHHCCCCEEEECCCH-HHHHHHHHHHHCCCEEE
T ss_conf             99999997499878732516-64999999999599899


No 28 
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*
Probab=66.94  E-value=3.1  Score=20.71  Aligned_cols=39  Identities=18%  Similarity=0.206  Sum_probs=28.5

Q ss_pred             EEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHH
Q ss_conf             369899875456869999999987999999427689999
Q gi|254780664|r   16 VKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLE   54 (536)
Q Consensus        16 ikrALiSV~dKtgl~~la~~L~~~g~~iisTgGTa~~l~   54 (536)
                      |++|||.=.-+--=...|+.|.+.|+.++-++-+.+.+.
T Consensus         1 M~tAlVTGas~GiG~aiA~~la~~Ga~V~i~~~~~~~~~   39 (254)
T 1zmt_A            1 MSTAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKD   39 (254)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf             998999668878899999999986998999969878899


No 29 
>2isb_A Fumarase, FUM-1; NP_069927.1, fumarase of FUM-1, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Archaeoglobus fulgidus} SCOP: c.8.9.1
Probab=66.40  E-value=4.9  Score=19.24  Aligned_cols=30  Identities=27%  Similarity=0.256  Sum_probs=11.7

Q ss_pred             CHHHHHHHHHHHHHHHEECC-CCHHHHHHHH
Q ss_conf             21457878865431111268-7989998851
Q gi|254780664|r  329 DQEVAKEVIKVFTEAIIAPT-LSEEAADVLA  358 (536)
Q Consensus       329 d~~~A~~I~~~F~EvIiAP~-f~~eAleiL~  358 (536)
                      |.-+.+.|.+.=+-++|..+ -+++..+-++
T Consensus       100 d~y~~~~l~~~Gv~~~IGKG~~s~~~~~a~k  130 (192)
T 2isb_A          100 NPFTPKILEKVECMGIIGKGGMSEEVVEAMR  130 (192)
T ss_dssp             TTTHHHHHHHCSCEEEEEBSCCCHHHHHHHT
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCHHHHHHHH
T ss_conf             6779999985281899986158877899985


No 30 
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein structure initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Probab=64.76  E-value=2  Score=22.03  Aligned_cols=31  Identities=16%  Similarity=0.273  Sum_probs=21.1

Q ss_pred             HHCCCCCCHHHHHH--HHCCCCCCEEEECHHHH
Q ss_conf             20023343469998--74015631353089998
Q gi|254780664|r  133 VENIDIGGPSMIRA--AAKNHDYVTILTNPQDY  163 (536)
Q Consensus       133 IEnIDIGGpsmiRA--AAKN~~~V~Vi~dp~dY  163 (536)
                      .-.|--||-+|+|-  -|.+-+...+|+|..-+
T Consensus        90 l~liKGgGgal~rEKiva~~a~~~iiI~D~sK~  122 (219)
T 1o8b_A           90 MQMIKGGGAALTREKIIASVAEKFICIADASKQ  122 (219)
T ss_dssp             SCEECCCCC-HHHHHHHHHHEEEEEEEEEGGGB
T ss_pred             HHHHHCCHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf             435642689999888999835256999742134


No 31 
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=60.46  E-value=8.2  Score=17.63  Aligned_cols=53  Identities=21%  Similarity=0.271  Sum_probs=34.3

Q ss_pred             CCCCEEEEECCCCCCCCHHHHHHHCCCCEEEECCCCCCHH----HHHHHHHHCCCEEE
Q ss_conf             3487099973668685558999971995999389877988----99999987597799
Q gi|254780664|r  474 MTNGSVIASEAFYPFPDGIVEAIKAGVTAVIQPGGSVRDS----EAITVADQHGIAMV  527 (536)
Q Consensus       474 ~~~g~vlaSDAFFPF~D~ie~aa~~Gi~aIiqPGGSirD~----evI~aan~~gi~m~  527 (536)
                      ..+|+.|-.-. +|-+.+...+..+||+-|+-....-+|.    ...+..++.||...
T Consensus        94 ~~~~~tlYvT~-ePC~~Ca~~I~~~GIk~Vvy~~~~~~~~~~~~~~~~~l~~aGI~v~  150 (178)
T 2w4l_A           94 DVKGCSMYVAL-FPCNECAKLIIQAGIKEVIFMSDKYHDSDEATAARLLFNMAGVTFR  150 (178)
T ss_dssp             CCTTCEEEEEE-CCCHHHHHHHHHTTCCEEEEEECTTTTSHHHHHHHHHHHHHTCEEE
T ss_pred             CCCCCEEEECC-CCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf             87798688718-9879999999994989899964678980777999999998899999


No 32 
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=55.06  E-value=10  Score=17.01  Aligned_cols=85  Identities=19%  Similarity=0.173  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHCCCCC--EEEEEECCEEEEECCCCCCHH-----HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCC
Q ss_conf             8899999986005667--799996893899729688889-----999999999876420012222348709997366868
Q gi|254780664|r  416 RDMKFAFKVVKHVKSN--AVVYAKDGRTVGIGSGQTSRV-----DSTRFAAIKAHNISAQADVKSMTNGSVIASEAFYPF  488 (536)
Q Consensus       416 ~dL~FA~kv~K~vkSN--AIv~ak~~~tiGiGaGQ~sRV-----da~~iA~~KA~~~~~~~~~~~~~~g~vlaSDAFFPF  488 (536)
                      ..+..|++.....+-+  +-||++++.+|+.|..+..+-     .+.-.|+.+|.....    ..++.|+.|-+- -.|=
T Consensus        17 ~Ai~~A~~~~~~g~~~PvGaVIv~~g~ii~~~~n~~~~~~~~~~HAE~~ai~~a~~~~~----~~~l~g~tlYvT-~EPC   91 (164)
T 1wkq_A           17 RAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLG----AYQLDDCILYTS-CEPC   91 (164)
T ss_dssp             HHHHHHHHHHHTTSSSSCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHT----SSSCTTEEEEEE-ECCC
T ss_pred             HHHHHHHHHHHCCCCCCEEEEEEECCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCC----CCCCCCCEEEEE-CCCH
T ss_conf             99999998855799998899999799899997001002577650189999999987438----877589889986-6843


Q ss_pred             CCHHHHHHHCCCCEEEE
Q ss_conf             55589999719959993
Q gi|254780664|r  489 PDGIVEAIKAGVTAVIQ  505 (536)
Q Consensus       489 ~D~ie~aa~~Gi~aIiq  505 (536)
                      +=+...+..+||+-|+-
T Consensus        92 ~mC~~ai~~agI~~Vvy  108 (164)
T 1wkq_A           92 PMCLGAIYWARPKAVFY  108 (164)
T ss_dssp             HHHHHHHHHHCCSEEEE
T ss_pred             HHHHHHHHHHCCCEEEE
T ss_conf             99999999856898999


No 33 
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=53.57  E-value=10  Score=16.85  Aligned_cols=33  Identities=12%  Similarity=0.189  Sum_probs=14.6

Q ss_pred             HHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCE
Q ss_conf             999971995999389877988999999875977
Q gi|254780664|r  493 VEAIKAGVTAVIQPGGSVRDSEAITVADQHGIA  525 (536)
Q Consensus       493 e~aa~~Gi~aIiqPGGSirD~evI~aan~~gi~  525 (536)
                      +.....|+..+..+.+.+.-.++.+...+.|+.
T Consensus       265 ~~l~~~~~~vi~~~~~~l~l~~il~~L~~~Gi~  297 (373)
T 2b3z_A          265 KRLSAFGVNIFTLETERIQIPDVLKILAEEGIM  297 (373)
T ss_dssp             HHHHTTTCEEEECSSSSCCHHHHHHHHHHTTCC
T ss_pred             HHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf             988861871443100134579999998775988


No 34 
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=53.42  E-value=11  Score=16.83  Aligned_cols=30  Identities=17%  Similarity=0.160  Sum_probs=19.2

Q ss_pred             HCCCCCCHHHHHH--HHCCCCCCEEEECHHHH
Q ss_conf             0023343469998--74015631353089998
Q gi|254780664|r  134 ENIDIGGPSMIRA--AAKNHDYVTILTNPQDY  163 (536)
Q Consensus       134 EnIDIGGpsmiRA--AAKN~~~V~Vi~dp~dY  163 (536)
                      -.|-=||.+|+|-  -|.+-+...+|+|..-+
T Consensus        94 ~lIKGgGgal~rEKiva~~a~~~i~I~D~sK~  125 (226)
T 2pjm_A           94 FLIKGGGGCHTQEKIVDYNANEFVVLVDESKL  125 (226)
T ss_dssp             CEECCTTSCHHHHHHHHHHSSEEEEEEEGGGE
T ss_pred             EEEECCCHHHHHHHHHHHHHCCEEEEECCCCC
T ss_conf             59974734689899999743349999862100


No 35 
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structural genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=53.23  E-value=9.7  Score=17.08  Aligned_cols=61  Identities=10%  Similarity=0.117  Sum_probs=30.6

Q ss_pred             HHHHHHHHHCCCCCEEEEEEECCCHHHHHC-----CCC-CHHHHHHCCCCCCHHHHHH--HHCCCCCCEEEECHHHH
Q ss_conf             899999997799841499994888899731-----765-3112320023343469998--74015631353089998
Q gi|254780664|r   95 PAHMKFMQDHELESIDLVVVNLYPFEESFC-----RED-DYYTMVENIDIGGPSMIRA--AAKNHDYVTILTNPQDY  163 (536)
Q Consensus        95 ~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~-----~~~-~~~~~IEnIDIGGpsmiRA--AAKN~~~V~Vi~dp~dY  163 (536)
                      ..-...++++||+-++        +++.-.     .++ ..+.-.-.|-=||-+|+|-  -|.+-+...+++|...+
T Consensus        60 ~~t~~~~~~~Gi~l~~--------l~~~~~iDl~iDGADeVd~~l~lIKGGGgallrEKiva~~a~~~iii~DesK~  128 (224)
T 3kwm_A           60 EDSTRKLKALGFDVVD--------LNYAGEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICIIDESKK  128 (224)
T ss_dssp             HHHHHHHHHTTCCBCC--------HHHHCSEEEEEECCSEECTTSCEECCSSSCHHHHHHHHHTEEEEEEEEEGGGB
T ss_pred             HHHHHHHHHCCCCCCC--------CCCCCEEEEEEECCHHHCCCCCEEECCCHHHHHHHHHHHHHHCEEEEECCCCE
T ss_conf             9999999862897536--------13388669999770322877558831617899989999962137999662313


No 36 
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2
Probab=52.56  E-value=11  Score=16.74  Aligned_cols=27  Identities=11%  Similarity=0.047  Sum_probs=9.3

Q ss_pred             CEEEEECCCCCHHHHHHHH-HHHHHHHE
Q ss_conf             0455542754214578788-65431111
Q gi|254780664|r  319 GGIIAFNREVDQEVAKEVI-KVFTEAII  345 (536)
Q Consensus       319 GGIIa~N~~vd~~~A~~I~-~~F~EvIi  345 (536)
                      |..+-.+.+=-..++..|. ..+-.||+
T Consensus        78 ~~~ly~t~ePC~mC~~ai~~agI~rVvy  105 (168)
T 1z3a_A           78 DATLYVTLEPCVMCAGAMIHSRIGRVVF  105 (168)
T ss_dssp             TCEEEEEECCCHHHHHHHHHHTCSEEEE
T ss_pred             CCEECCCCCCCCCHHHHHHHCCCCEEEE
T ss_conf             7402216999733898995368878999


No 37 
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomics in europe, spine, hydrolase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=52.00  E-value=11  Score=16.68  Aligned_cols=38  Identities=11%  Similarity=0.067  Sum_probs=24.6

Q ss_pred             ECCCCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCC
Q ss_conf             736686855589999719959993898779889999998759
Q gi|254780664|r  482 SEAFYPFPDGIVEAIKAGVTAVIQPGGSVRDSEAITVADQHG  523 (536)
Q Consensus       482 SDAFFPF~D~ie~aa~~Gi~aIiqPGGSirD~evI~aan~~g  523 (536)
                      .+..+.+.+-++.+++.||..|.-=||    ..++..-=+.|
T Consensus       302 ~~~~ldl~~iL~~L~~~Gi~~LLVEGG----~~L~~sfL~~~  339 (402)
T 2g6v_A          302 HKGHLDLVVLMMQLGKQQINSIWVEAG----PTLAGALLQAG  339 (402)
T ss_dssp             ETTEECHHHHHHHHHHTTCCEEEECCC----HHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHCCCCEEEEEEH----HHHHHHHHHCC
T ss_conf             477404999999998769999999427----99999998769


No 38 
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotransferase; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis; HET: PLP; 1.91A {Salmonella typhimurium LT2} PDB: 2pb0_A*
Probab=51.51  E-value=8.5  Score=17.51  Aligned_cols=18  Identities=11%  Similarity=0.169  Sum_probs=9.2

Q ss_pred             EECCCCCCHHHHHHHHHH
Q ss_conf             938987798899999987
Q gi|254780664|r  504 IQPGGSVRDSEAITVADQ  521 (536)
Q Consensus       504 iqPGGSirD~evI~aan~  521 (536)
                      +.|-=.+.++|+-++.+.
T Consensus       393 ~~PpL~it~~eId~~l~~  410 (420)
T 2pb2_A          393 FAPSLVVEEADIHEGMQR  410 (420)
T ss_dssp             ECCCTTCCHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
T ss_conf             928977899999999999


No 39 
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, thioredoxin fold, structural genomics, PSI- 2; HET: MSE; 1.50A {Staphylococcus aureus subsp}
Probab=51.21  E-value=7  Score=18.11  Aligned_cols=33  Identities=12%  Similarity=0.337  Sum_probs=19.4

Q ss_pred             CEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             27999615686565452016899999985332132
Q gi|254780664|r  283 AACVIVKHMNPCGVATADTLVEAYRRALSCDPISA  317 (536)
Q Consensus       283 Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SA  317 (536)
                      +.++|+||..-||++..  ...-|++-+....+..
T Consensus        25 ~~vlIFKHSt~C~IS~~--a~~~~e~~~~~~~~~~   57 (112)
T 3iv4_A           25 KYVFVLKHSETCPISAN--AYDQFNKFLYERDMDG   57 (112)
T ss_dssp             SEEEEEEECTTCHHHHH--HHHHHHHHHHHHTCCE
T ss_pred             CCEEEEEECCCCHHHHH--HHHHHHHHCCCCCCCE
T ss_conf             97899970898850599--9999986321367876


No 40 
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=51.08  E-value=11  Score=16.58  Aligned_cols=68  Identities=12%  Similarity=0.168  Sum_probs=32.5

Q ss_pred             EEEEE-ECCEEEEECCCCCCH-----HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCEEEE
Q ss_conf             79999-689389972968888-----999999999987642001222234870999736686855589999719959993
Q gi|254780664|r  432 AVVYA-KDGRTVGIGSGQTSR-----VDSTRFAAIKAHNISAQADVKSMTNGSVIASEAFYPFPDGIVEAIKAGVTAVIQ  505 (536)
Q Consensus       432 AIv~a-k~~~tiGiGaGQ~sR-----Vda~~iA~~KA~~~~~~~~~~~~~~g~vlaSDAFFPF~D~ie~aa~~Gi~aIiq  505 (536)
                      |+++. +++++|+.|--++..     .+|--.|+.+|....     ...++|+.|.+- .-|=+.+...+..+||+-|+-
T Consensus        38 aviV~~~~g~Ii~~g~N~~~~~~d~t~HAE~~Ai~~a~~~~-----~~~l~~~tlyvT-lEPC~mC~~ai~~~gI~rVv~  111 (161)
T 1p6o_A           38 GCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRLE-----GKVYKDTTLYTT-LSPCDMCTGAIIMYGIPRCVV  111 (161)
T ss_dssp             EEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHHHCSCC-----HHHHTTEEEEEE-ECCCHHHHHHHHHHTCCEEEE
T ss_pred             EEEEECCCCEEEEEEECEEECCCCCCCCHHHHHHHHHHHCC-----CCCCCCCEEEEC-CCCCHHHHHHHHHHCCCEEEE
T ss_conf             99998599969998613000479997579899998764128-----976778368852-688799999999969398999


No 41 
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=50.66  E-value=12  Score=16.54  Aligned_cols=30  Identities=13%  Similarity=0.091  Sum_probs=14.2

Q ss_pred             HHHHHCCCCEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf             99997199599938987798899999987597
Q gi|254780664|r  493 VEAIKAGVTAVIQPGGSVRDSEAITVADQHGI  524 (536)
Q Consensus       493 e~aa~~Gi~aIiqPGGSirD~evI~aan~~gi  524 (536)
                      +.+.+.|++.+|.|.-  .+++.|+.+-+..|
T Consensus       197 ~~l~~~g~~~~v~~~p--s~~~li~~a~~l~~  226 (229)
T 3p9z_A          197 LYLQEQGIPSYIAKKP--SLEACLELALSLRI  226 (229)
T ss_dssp             HHHHHTTCCEEECSSS--SHHHHHHHHHHTC-
T ss_pred             HHHHHCCCCEEECCCC--CHHHHHHHHHHHHH
T ss_conf             9999769956984999--98999999999754


No 42 
>3kd8_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; structural genomics, PSI-2, protein genomics, MCSG, glycolysis isomerase; 2.60A {Thermoplasma acidophilum} PDB: 3idd_A
Probab=49.05  E-value=5.1  Score=19.10  Aligned_cols=11  Identities=27%  Similarity=0.468  Sum_probs=7.2

Q ss_pred             CEEEEEEEEEC
Q ss_conf             13698998754
Q gi|254780664|r   15 AVKTALISVHN   25 (536)
Q Consensus        15 ~ikrALiSV~d   25 (536)
                      .|||.++=|-|
T Consensus         3 ~MkrviliVlD   13 (399)
T 3kd8_A            3 AMKSIILIVLD   13 (399)
T ss_dssp             -CCEEEEEEEE
T ss_pred             CCCEEEEEEEC
T ss_conf             88869999857


No 43 
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=47.76  E-value=13  Score=16.23  Aligned_cols=66  Identities=18%  Similarity=0.108  Sum_probs=26.8

Q ss_pred             EEEECCEEEEECCCCCC-----HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCEEE
Q ss_conf             99968938997296888-----899999999998764200122223487099973668685558999971995999
Q gi|254780664|r  434 VYAKDGRTVGIGSGQTS-----RVDSTRFAAIKAHNISAQADVKSMTNGSVIASEAFYPFPDGIVEAIKAGVTAVI  504 (536)
Q Consensus       434 v~ak~~~tiGiGaGQ~s-----RVda~~iA~~KA~~~~~~~~~~~~~~g~vlaSDAFFPF~D~ie~aa~~Gi~aIi  504 (536)
                      |+++|+++||.|.-|..     -.+|.-.|+.+|.....    ...++|+.+-+-- -|=+-+...+..+||+-|+
T Consensus        41 VIV~~g~IIa~g~N~~~~~~~~~~HAe~~ai~~a~~~~~----~~~l~~~~lyvTl-EPC~mC~~ai~~a~I~rVv  111 (179)
T 2nx8_A           41 VIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEG----NWRLLDTTLFVTI-EPCVMCSGAIGLARIPHVI  111 (179)
T ss_dssp             EEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHT----SSCCTTEEEEEEE-CCBHHHHHHHHHTTCCEEE
T ss_pred             EEEECCEEEEEECCEEECCCCCCHHHHHHHHHHHHHHHC----CCCCCCCEEECCC-CCCHHHHHHHHHHCCCEEE
T ss_conf             999899999986151305899723299988999998608----8737676244576-8667999999982868499


No 44 
>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural genomics, PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=47.68  E-value=13  Score=16.22  Aligned_cols=29  Identities=17%  Similarity=0.071  Sum_probs=17.6

Q ss_pred             HHHHHCCCCC-CEEEECHHHHHHHHHHHHC
Q ss_conf             9987401563-1353089998988987530
Q gi|254780664|r  144 IRAAAKNHDY-VTILTNPQDYPLFLAEMDV  172 (536)
Q Consensus       144 iRAAAKN~~~-V~Vi~dp~dY~~~~~el~~  172 (536)
                      -||.+.+-.. ++|-++|.++...++-.+.
T Consensus        23 ~~a~~~gv~~ii~~~~~~~~~~~~~~l~~~   52 (265)
T 2gzx_A           23 TRAREAGVDRMFVVGFNKSTIERAMKLIDE   52 (265)
T ss_dssp             HHHHHTTCCEEEEEECSHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf             999987998899925899999999999965


No 45 
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil...; TM1828, structural genomics, PSI-2; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=46.70  E-value=13  Score=16.11  Aligned_cols=17  Identities=18%  Similarity=0.434  Sum_probs=5.9

Q ss_pred             HHHHHHCCCCEEEECCC
Q ss_conf             89999719959993898
Q gi|254780664|r  492 IVEAIKAGVTAVIQPGG  508 (536)
Q Consensus       492 ie~aa~~Gi~aIiqPGG  508 (536)
                      ++.+.+.||..|.-=||
T Consensus       279 L~~L~~~Gi~slLVEGG  295 (360)
T 2hxv_A          279 LRNLYERDIDSVLVEGG  295 (360)
T ss_dssp             HHHHHHTTCCEEEECCC
T ss_pred             HHHHHHCCCCEEEEEEH
T ss_conf             99998679989999236


No 46 
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=46.66  E-value=13  Score=16.11  Aligned_cols=58  Identities=12%  Similarity=0.096  Sum_probs=30.7

Q ss_pred             HHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHCC
Q ss_conf             9999977998414999948888997317653112320023343469998740156313530899989889875302
Q gi|254780664|r   98 MKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVN  173 (536)
Q Consensus        98 ~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~el~~~  173 (536)
                      .+.|+++|..++-+=+...=|..     ...+.+.+.++|            +|. -.|.|+++--..+.+.|+..
T Consensus        41 ~~~L~~~G~~~~~~Pli~i~~~~-----~~~l~~~~~~l~------------~y~-~iIFTS~naV~~f~~~l~~~   98 (286)
T 1jr2_A           41 IRELGLYGLEATLIPVLSFEFLS-----LPSFSEKLSHPE------------DYG-GLIFTSPRAVEAAELCLEQN   98 (286)
T ss_dssp             HHHHHTTTCEEEEEECEEEEECC-----HHHHHHHHTCGG------------GCS-EEEECCHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCCEEEECCEEEEECC-----HHHHHHHHHCHH------------HCC-EEEEECHHHHHHHHHHHHHH
T ss_conf             99999889978998998888387-----589999872831------------157-89997869999999999873


No 47 
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=46.01  E-value=10  Score=16.96  Aligned_cols=17  Identities=12%  Similarity=0.178  Sum_probs=8.9

Q ss_pred             EECCCCCCHHHHHHHHH
Q ss_conf             93898779889999998
Q gi|254780664|r  504 IQPGGSVRDSEAITVAD  520 (536)
Q Consensus       504 iqPGGSirD~evI~aan  520 (536)
                      +.|-=-+.|+|+-++.+
T Consensus       372 ~~Ppl~it~~eid~~l~  388 (395)
T 1vef_A          372 FLPPLVIEKEDLERVVE  388 (395)
T ss_dssp             ECCCTTCCHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHH
T ss_conf             97984599999999999


No 48 
>2vld_A NUCS, UPF0286 protein pyrab01260; endonuclease, hydrolase; 2.60A {Pyrococcus abyssi}
Probab=45.58  E-value=11  Score=16.70  Aligned_cols=29  Identities=31%  Similarity=0.527  Sum_probs=21.9

Q ss_pred             HHHHEECCCCHHHHHHHHCCCCCEEEECCC
Q ss_conf             311112687989998851245531563167
Q gi|254780664|r  341 TEAIIAPTLSEEAADVLAKKPSMRFLKTSS  370 (536)
Q Consensus       341 ~EvIiAP~f~~eAleiL~~KKnlRil~~~~  370 (536)
                      .-+++||++++.|.+.+.. .+++.+.+..
T Consensus       204 rGIlvA~~it~~a~~ll~~-~Gie~~~~~p  232 (251)
T 2vld_A          204 RGILVAPSLTEGAKKLLEK-EGLEFRKLEP  232 (251)
T ss_dssp             EEEEEESCBCHHHHHHHHH-HTCEEEECCC
T ss_pred             EEEEECCCCCHHHHHHHHH-CCCEEEEECC
T ss_conf             6999868699899999997-8977999683


No 49 
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2
Probab=45.12  E-value=14  Score=15.95  Aligned_cols=97  Identities=16%  Similarity=0.235  Sum_probs=60.9

Q ss_pred             CCCCCCCCCCEEEEEEEEECCCCH-HHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHC-CCCHHCCCCCCCCCCH
Q ss_conf             577886776136989987545686-99999999879999994276899998899517946534-8816519855323715
Q gi|254780664|r    6 RKDGDHGEIAVKTALISVHNKTGV-VEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDIT-KFPEIMGGRVKTLHPK   83 (536)
Q Consensus         6 ~~~~~~~~~~ikrALiSV~dKtgl-~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~T-gfpEil~GRVKTLHP~   83 (536)
                      |+-...|+++=|.|||.=.-+ || ..+|+.|.+.|..++-++-....+.+.      ++++. .+++..+++|.+++--
T Consensus         8 ~~~~~~g~L~gKvalITGgs~-GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~------~~el~~~~~~~~~~~~~~~~~D   80 (303)
T 1yxm_A            8 RSYLAPGLLQGQVAIVTGGAT-GIGKAIVKELLELGSNVVIASRKLERLKSA------ADELQANLPPTKQARVIPIQCN   80 (303)
T ss_dssp             CCSBCTTTTTTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHH------HHHHHHTSCTTCCCCEEEEECC
T ss_pred             CCCCCCCCCCCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHH------HHHHHHHHCCCCCCEEEEEECC
T ss_conf             888899877979899938986-899999999998799899997988999999------9999843042569659999745


Q ss_pred             HHHHHHHCCCCHHHHHHHHH---CCCCCEEEEEEECC
Q ss_conf             55355330889899999997---79984149999488
Q gi|254780664|r   84 IYGGILSIRDNPAHMKFMQD---HELESIDLVVVNLY  117 (536)
Q Consensus        84 I~ggIL~~r~~~~~~~~l~~---~~i~~IDlVvvNLY  117 (536)
                      +        .++++.+.+-+   .....||++|.|=.
T Consensus        81 v--------t~~~~v~~~v~~~~~~~G~iDiLVnnAg  109 (303)
T 1yxm_A           81 I--------RNEEEVNNLVKSTLDTFGKINFLVNNGG  109 (303)
T ss_dssp             T--------TCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             C--------CCHHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf             8--------9999999999999997399989998998


No 50 
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1
Probab=45.00  E-value=14  Score=15.93  Aligned_cols=64  Identities=11%  Similarity=0.194  Sum_probs=30.3

Q ss_pred             CHHHHHHHHHCCCCCEEEEE---EECCCHHHHHCCCC-CHHHHHHCCCCCCHHHHHH--HHCCCCCCEEEECHHHH
Q ss_conf             98999999977998414999---94888899731765-3112320023343469998--74015631353089998
Q gi|254780664|r   94 NPAHMKFMQDHELESIDLVV---VNLYPFEESFCRED-DYYTMVENIDIGGPSMIRA--AAKNHDYVTILTNPQDY  163 (536)
Q Consensus        94 ~~~~~~~l~~~~i~~IDlVv---vNLYPF~~~v~~~~-~~~~~IEnIDIGGpsmiRA--AAKN~~~V~Vi~dp~dY  163 (536)
                      .......++++||+.+++--   .++|     + .++ ..+.-.-.|-=||=+|+|-  .|.+-+...+|+|..-+
T Consensus        53 S~~t~~~~~~~Gi~~~~l~~~~~iDia-----i-DGaDevd~~l~lIKGgGgallrEKiva~~a~~~i~I~DesKl  122 (219)
T 1m0s_A           53 SKESEELLRKQGIEVFNANDVSSLDIY-----V-DGADEINPQKMMIKGGGAALTREKIVAALAKKFICIVDSSKQ  122 (219)
T ss_dssp             SHHHHHHHHHTTCCBCCGGGCSCEEEE-----E-ECCSEECTTSCEECCTTSCHHHHHHHHHHEEEEEEEEEGGGB
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCCEE-----C-CCHHHCCCCCCCHHCCCHHHHHHHHHHHHHHCEEEEECCCHH
T ss_conf             689999999879973344435654532-----3-645530847586215838888989999850027999524401


No 51 
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=44.92  E-value=14  Score=15.93  Aligned_cols=16  Identities=31%  Similarity=0.627  Sum_probs=9.6

Q ss_pred             CCEEEEEEEEECCCCH
Q ss_conf             6136989987545686
Q gi|254780664|r   14 IAVKTALISVHNKTGV   29 (536)
Q Consensus        14 ~~ikrALiSV~dKtgl   29 (536)
                      .|+|-|.|+|||..|.
T Consensus         9 ~p~rvavitvsD~rg~   24 (172)
T 1mkz_A            9 IPTRIAILTVSNRRGE   24 (172)
T ss_dssp             CCCEEEEEEECSSCCG
T ss_pred             CCCEEEEEEEECCCCC
T ss_conf             6868999998489886


No 52 
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4
Probab=44.61  E-value=14  Score=15.89  Aligned_cols=17  Identities=6%  Similarity=0.159  Sum_probs=8.1

Q ss_pred             EECCCCCCHHHHHHHHH
Q ss_conf             93898779889999998
Q gi|254780664|r  504 IQPGGSVRDSEAITVAD  520 (536)
Q Consensus       504 iqPGGSirD~evI~aan  520 (536)
                      +.|-=.+-|+|+=+..+
T Consensus       404 ~~Ppl~it~e~id~~~~  420 (433)
T 1z7d_A          404 LTPPLCITKEQLDECTE  420 (433)
T ss_dssp             ECCCTTCCHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHH
T ss_conf             97996889999999999


No 53 
>2x4l_A Ferric-siderophore receptor protein; transport; 1.50A {Streptomyces coelicolor}
Probab=43.27  E-value=5.1  Score=19.13  Aligned_cols=92  Identities=14%  Similarity=0.170  Sum_probs=49.8

Q ss_pred             EEEECCCCH-HHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHH--HHHCCCCHHH
Q ss_conf             987545686-9999999987999999427689999889951794653488165198553237155535--5330889899
Q gi|254780664|r   21 ISVHNKTGV-VEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGG--ILSIRDNPAH   97 (536)
Q Consensus        21 iSV~dKtgl-~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~gg--IL~~r~~~~~   97 (536)
                      ++|.|-.|- +.|-+    .==+|++.++++..|-+.|+++.-|...+..+....- .+...+.+ .+  .+..+..+-+
T Consensus        29 ~titD~~G~~Vt~~~----~P~RVV~~~~~~~~l~~lg~~~vgv~~~~~~~~~~~~-~~~~~~~~-~~~~~vg~~~~~~n  102 (325)
T 2x4l_A           29 WSFKDDRGTTVKLDK----VPANIVAFTGVAAALFDYGVEVKGVFGPTTTKDGKPD-VQAGDLDV-DKVTVLGNEWGKLN  102 (325)
T ss_dssp             EEEECTTSCEEEESS----CCSSEEEEHHHHHHHHHTTCCCSEEESSCBCTTSCBC-GGGTTCCT-TTSEEEESSTTCCC
T ss_pred             EEEEECCCCEEECCC----CCCEEEECCCHHHHHHHCCCCEEEEECCCCCCCCCCH-HHHCCCCC-CCCCEECCCCCCCC
T ss_conf             889979999868789----9988998896299999869966999714657776620-33302220-24852067889989


Q ss_pred             HHHHHHCCCCCEEEEEEECCCHHH
Q ss_conf             999997799841499994888899
Q gi|254780664|r   98 MKFMQDHELESIDLVVVNLYPFEE  121 (536)
Q Consensus        98 ~~~l~~~~i~~IDlVvvNLYPF~~  121 (536)
                      .+.+-.+  . =|||++.-|-+..
T Consensus       103 ~E~I~al--~-PDLIi~~~~~~~~  123 (325)
T 2x4l_A          103 VEKYASL--A-PEVLITTTFDTAG  123 (325)
T ss_dssp             HHHHHHT--C-CSEEEEEECSTTC
T ss_pred             HHHHHHC--C-CCEEEEECCCCCC
T ss_conf             9999852--9-9989993556766


No 54 
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=41.37  E-value=16  Score=15.55  Aligned_cols=84  Identities=12%  Similarity=0.100  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHC--CCCCEEEEEECCEEEEECCCCCCH-----HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCC
Q ss_conf             889999998600--566779999689389972968888-----9999999999876420012222348709997366868
Q gi|254780664|r  416 RDMKFAFKVVKH--VKSNAVVYAKDGRTVGIGSGQTSR-----VDSTRFAAIKAHNISAQADVKSMTNGSVIASEAFYPF  488 (536)
Q Consensus       416 ~dL~FA~kv~K~--vkSNAIv~ak~~~tiGiGaGQ~sR-----Vda~~iA~~KA~~~~~~~~~~~~~~g~vlaSDAFFPF  488 (536)
                      ..|..||+....  +. =+-|+++++.+|+.|..+..+     ..|--.|+.+|.....    ...++|+.|-+-- .|=
T Consensus        29 ~Al~~A~~a~~~g~~P-VGaVIV~~~~ii~~g~n~~~~~~~~~~HAE~~ai~~a~~~~~----~~~l~~~tlY~Tl-EPC  102 (171)
T 1wwr_A           29 VALREAKRAFEKGEVP-VGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLN----TKYLEGCELYVTL-EPC  102 (171)
T ss_dssp             HHHHHHHHHHHTTSCC-CEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHT----CSCCTTEEEEESS-CCB
T ss_pred             HHHHHHHHHHHCCCCC-EEEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC----CCCCCCCEEECCC-CCC
T ss_conf             9999999861369998-999999899698653366446999731499999999997608----6556786885315-878


Q ss_pred             CCHHHHHHHCCCCEEEE
Q ss_conf             55589999719959993
Q gi|254780664|r  489 PDGIVEAIKAGVTAVIQ  505 (536)
Q Consensus       489 ~D~ie~aa~~Gi~aIiq  505 (536)
                      +-+...+..+||+-||-
T Consensus       103 ~mC~~ai~~sgI~rVvy  119 (171)
T 1wwr_A          103 IMCSYALVLSRIEKVIF  119 (171)
T ss_dssp             HHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHHCCCEEEE
T ss_conf             88999999858885999


No 55 
>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.50A {Saccharomyces cerevisiae YJM789}
Probab=40.70  E-value=15  Score=15.72  Aligned_cols=47  Identities=15%  Similarity=0.188  Sum_probs=21.9

Q ss_pred             EEEECCCCCHHHHHHHHHH----HHHHHEECCCCHHHHHHHHCCCCCEEEE
Q ss_conf             5554275421457878865----4311112687989998851245531563
Q gi|254780664|r  321 IIAFNREVDQEVAKEVIKV----FTEAIIAPTLSEEAADVLAKKPSMRFLK  367 (536)
Q Consensus       321 IIa~N~~vd~~~A~~I~~~----F~EvIiAP~f~~eAleiL~~KKnlRil~  367 (536)
                      +|.=...=+.+.|+.+.+.    ++=+.+.--.+++..++++.=+-=|||.
T Consensus       250 ~v~H~FsG~~~~a~~~l~lg~~~~~s~~~~~~~~~~~~~~vk~iPldrlLl  300 (401)
T 3e2v_A          250 LVVHSFTGSAIDLQKLLNLSPNIFIGVNGCSLRTEENLAVVKQIPTERLLL  300 (401)
T ss_dssp             EEECSCCCCHHHHHHHHHHCTTEEEEECGGGGSSHHHHHHHHTSCGGGEEE
T ss_pred             EEEEECCCCHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHHHCCHHHEEE
T ss_conf             699805796788777750587499987665434567999998699467798


No 56 
>1y8a_A Hypothetical protein AF1437; structural genomics, protein structure initiative, PSI, midwest center for structural genomics, MCSG; 1.40A {Archaeoglobus fulgidus dsm 4304} SCOP: c.108.1.24
Probab=40.42  E-value=15  Score=15.66  Aligned_cols=27  Identities=15%  Similarity=0.101  Sum_probs=12.6

Q ss_pred             CCHHHHHHHHCCCCCCEEEECHHHHHH
Q ss_conf             434699987401563135308999898
Q gi|254780664|r  139 GGPSMIRAAAKNHDYVTILTNPQDYPL  165 (536)
Q Consensus       139 GGpsmiRAAAKN~~~V~Vi~dp~dY~~  165 (536)
                      |-..+++..-+++....+-++..+|..
T Consensus       107 g~~~li~~lk~~~~~~iisg~~~~~~~  133 (332)
T 1y8a_A          107 DAEKAMATLQERWTPVVISTSYTQYLR  133 (332)
T ss_dssp             THHHHHHHHHTTCEEEEEEEEEHHHHH
T ss_pred             CHHHHHHHHHHCCCEEEEECCCHHHHH
T ss_conf             499999999862977898178289999


No 57 
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=39.45  E-value=17  Score=15.35  Aligned_cols=79  Identities=16%  Similarity=0.236  Sum_probs=44.1

Q ss_pred             EEEEEEEECCCCH-HHHHHHHHHCC--CEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             6989987545686-99999999879--99999427689999889951794653488165198553237155535533088
Q gi|254780664|r   17 KTALISVHNKTGV-VEFASRLLSRG--IKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRD   93 (536)
Q Consensus        17 krALiSV~dKtgl-~~la~~L~~~g--~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~   93 (536)
                      |++||.=..+ || .++|+.|.+.|  +.++.++-+...+.+             ..+..++|+..+.        .+-.
T Consensus         4 K~ilITGas~-GIG~a~a~~La~~G~~~~Vi~~~R~~~~~~~-------------l~~~~~~~~~~~~--------~D~s   61 (250)
T 1yo6_A            4 GSVVVTGANR-GIGLGLVQQLVKDKNIRHIIATARDVEKATE-------------LKSIKDSRVHVLP--------LTVT   61 (250)
T ss_dssp             SEEEESSCSS-HHHHHHHHHHHTCTTCCEEEEEESSGGGCHH-------------HHTCCCTTEEEEE--------CCTT
T ss_pred             CEEEEECCCC-HHHHHHHHHHHHCCCCCEEEEEECCHHHHHH-------------HHHHHCCCEEEEE--------EECC
T ss_conf             9999948887-9999999999977998789999699999999-------------9872189659999--------8558


Q ss_pred             CHHHHHHH-----HHCCCCCEEEEEEECC
Q ss_conf             98999999-----9779984149999488
Q gi|254780664|r   94 NPAHMKFM-----QDHELESIDLVVVNLY  117 (536)
Q Consensus        94 ~~~~~~~l-----~~~~i~~IDlVvvNLY  117 (536)
                      +++..+++     +.++-..||++|.|=-
T Consensus        62 ~~~~v~~~~~~~~~~~g~~~iDilinNAG   90 (250)
T 1yo6_A           62 CDKSLDTFVSKVGEIVGSDGLSLLINNAG   90 (250)
T ss_dssp             CHHHHHHHHHHHHHHHGGGCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             99999999999999848998589997885


No 58 
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotide, structural genomics, NPPSFA; 2.80A {Thermus thermophilus HB8}
Probab=39.27  E-value=17  Score=15.33  Aligned_cols=19  Identities=11%  Similarity=0.193  Sum_probs=9.9

Q ss_pred             HHCCCCCCCCCCCCCCCHH
Q ss_conf             2105898883122212001
Q gi|254780664|r  252 VLVQGKPLSYNNINDLDAA  270 (536)
Q Consensus       252 ~ql~GKeLSYNNllD~daA  270 (536)
                      +-|.|+|+|+-=+.|-...
T Consensus       181 E~l~G~E~s~~~~~dg~~~  199 (417)
T 2ip4_A          181 EYLEGEEATVLALTDGETI  199 (417)
T ss_dssp             ECCCSCEEEEEEEESSSCE
T ss_pred             HHHCCCCCEEEEEECCCCC
T ss_conf             5635455258999637853


No 59 
>1qb7_A APRT, adenine phosphoribosyltransferase; dinucleotide binding fold; HET: ADE CIT; 1.50A {Leishmania donovani} SCOP: c.61.1.1 PDB: 1qb8_A* 1qcc_A* 1qcd_A 1mzv_A*
Probab=38.79  E-value=7.7  Score=17.81  Aligned_cols=26  Identities=19%  Similarity=0.319  Sum_probs=13.3

Q ss_pred             EEEEECCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             799961568656545201689999998533
Q gi|254780664|r  284 ACVIVKHMNPCGVATADTLVEAYRRALSCD  313 (536)
Q Consensus       284 a~vIvKH~NPCGvA~~~~~~~Ay~~A~~~D  313 (536)
                      -++||--.    +++|.++..+.+...++.
T Consensus       140 rVlIVDDv----iaTGgT~~a~~~ll~~~G  165 (236)
T 1qb7_A          140 RVVLIDDV----LATGGTALSGLQLVEASD  165 (236)
T ss_dssp             EEEEEEEE----ESSCHHHHHHHHHHHHTT
T ss_pred             EEEEEEEE----ECCCHHHHHHHHHHHHCC
T ss_conf             79999601----635669999999999879


No 60 
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infectious disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1}
Probab=38.51  E-value=17  Score=15.32  Aligned_cols=30  Identities=10%  Similarity=0.093  Sum_probs=17.0

Q ss_pred             HHHHHHCCCCCCE-EEECHHHHHHHHHHHHC
Q ss_conf             9998740156313-53089998988987530
Q gi|254780664|r  143 MIRAAAKNHDYVT-ILTNPQDYPLFLAEMDV  172 (536)
Q Consensus       143 miRAAAKN~~~V~-Vi~dp~dY~~~~~el~~  172 (536)
                      +-||.+.|-..+. +-+++++....++-.+.
T Consensus        58 l~rA~~~gV~~ii~~g~~~~~~~~a~~La~~   88 (325)
T 3ipw_A           58 LQRAERNGLSHIIITSGCLNDFKKAIEIINK   88 (325)
T ss_dssp             HHHHHHTTEEEEEECCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf             9999986999899923999999999999986


No 61 
>3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A {Alicyclobacillus acidocaldarius}
Probab=38.07  E-value=18  Score=15.20  Aligned_cols=19  Identities=16%  Similarity=0.350  Sum_probs=10.0

Q ss_pred             HHHHHHHHCCCCCEEEEEE
Q ss_conf             9999999779984149999
Q gi|254780664|r   96 AHMKFMQDHELESIDLVVV  114 (536)
Q Consensus        96 ~~~~~l~~~~i~~IDlVvv  114 (536)
                      .+++.|+++|+..|-|++-
T Consensus        57 ~~l~~m~~~G~N~Vrl~~~   75 (343)
T 3civ_A           57 ASMRALAEQPFNWVTLAFA   75 (343)
T ss_dssp             HHHHHHHHSSCSEEEEEEE
T ss_pred             HHHHHHHHCCCCEEEEEEE
T ss_conf             9999999859988999610


No 62 
>1kid_A Groel (HSP60 class); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Escherichia coli} SCOP: c.8.5.1 PDB: 1fya_A 1fy9_A 1la1_A 1jon_A 1dk7_A 1dkd_A
Probab=37.98  E-value=13  Score=16.18  Aligned_cols=98  Identities=26%  Similarity=0.285  Sum_probs=49.6

Q ss_pred             HHEECCCCHHHHHHH---HCCCCCEEEECCCCCCCCCCC----CEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             111268798999885---124553156316766777666----4020321022310123345310001246777868898
Q gi|254780664|r  343 AIIAPTLSEEAADVL---AKKPSMRFLKTSSLLDFHGEE----IVLKTVSGGILVQTRDNVVDNKELTVVTKRSPTDQEL  415 (536)
Q Consensus       343 vIiAP~f~~eAleiL---~~KKnlRil~~~~~~~~~~~~----~~~rsi~GG~LvQ~~D~~~~~~~~~vVT~~~pt~~e~  415 (536)
                      +|||.+|+++||..|   +.|.++++..++.. .+....    .++--+.||.++-+. ...   +++.++     .   
T Consensus        75 lIIA~di~~eaL~~Lv~N~~kg~l~v~aVkaP-gfG~~r~~~LeDLAilTGa~vi~~~-~g~---~l~~~~-----~---  141 (203)
T 1kid_A           75 LIIAEDVEGEALATLVVNTMRGIVKVAAVKAP-GFGDRRKAMLQDIATLTGGTVISEE-IGM---ELEKAT-----L---  141 (203)
T ss_dssp             EEEESEECHHHHHHHHHHHHTTSCCEEEEECC-SCHHHHHHHHHHHHHHHTCCCBCGG-GTC---CGGGCC-----G---
T ss_pred             EEEECCCCHHHHHHHHHHHCCCCCCEEEECCC-CCCHHHHHHHHHHHHHHCCEEECHH-CCC---CCCCCC-----H---
T ss_conf             99954106889999998640587532464388-8776789999999998399986510-277---624399-----8---


Q ss_pred             HHHHHHHHHHHCCCCCEEEEEECCEEEEECCCCCC----HHHHHHHHHHHH
Q ss_conf             88999999860056677999968938997296888----899999999998
Q gi|254780664|r  416 RDMKFAFKVVKHVKSNAVVYAKDGRTVGIGSGQTS----RVDSTRFAAIKA  462 (536)
Q Consensus       416 ~dL~FA~kv~K~vkSNAIv~ak~~~tiGiGaGQ~s----RVda~~iA~~KA  462 (536)
                      .+         .-+-.-|++.++..++=-|.|...    ||+.++-.++++
T Consensus       142 ~~---------LGsa~kv~itk~~T~ii~g~g~~~~I~~Ri~~Lk~~l~~~  183 (203)
T 1kid_A          142 ED---------LGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEA  183 (203)
T ss_dssp             GG---------CEEEEEEEECSSCEEEEEECCCHHHHHHHHHHHHHHHHHC
T ss_pred             HH---------CCCCCEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             68---------8975589987987089758999899999999999999986


No 63 
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=37.82  E-value=18  Score=15.17  Aligned_cols=54  Identities=22%  Similarity=0.353  Sum_probs=26.1

Q ss_pred             CCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHH--HHHHHHCCCCEEEHH
Q ss_conf             157788677613698998754568699999999879999994276--899998899517946
Q gi|254780664|r    5 HRKDGDHGEIAVKTALISVHNKTGVVEFASRLLSRGIKIISTGGT--CQLLEEEGIPVTSVF   64 (536)
Q Consensus         5 ~~~~~~~~~~~ikrALiSV~dKtgl~~la~~L~~~g~~iisTgGT--a~~l~~~gi~v~~Vs   64 (536)
                      |.....+.+-++|-|+|+|+|.     ....+...| +|.=|.|-  ++.|++.|+.|....
T Consensus         5 ~~~~~~~~~~~~r~~Iitvgd~-----~~~~~~~~g-~i~D~ng~~L~~~L~~~G~~v~~~~   60 (178)
T 2pjk_A            5 HKKHKENAPKSLNFYVITISTS-----RYEKLLKKE-PIVDESGDIIKQLLIENGHKIIGYS   60 (178)
T ss_dssp             --------CCCCEEEEEEECHH-----HHHHHHTTC-CCCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHCCCCCCEEEEEEECCC-----CCCCCCCCC-CCCCCHHHHHHHHHHHCCCEEEEEE
T ss_conf             0436743898878999998478-----876654679-8755569999999998899898987


No 64 
>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii}
Probab=37.72  E-value=18  Score=15.16  Aligned_cols=61  Identities=18%  Similarity=0.209  Sum_probs=37.2

Q ss_pred             HHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHC
Q ss_conf             9999997799841499994888899731765311232002334346999874015631353089998988987530
Q gi|254780664|r   97 HMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDV  172 (536)
Q Consensus        97 ~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~el~~  172 (536)
                      -..+.+..|....=+=++---||.+.++  .--|.+++|||||--             .-+--|++-+..++.+.+
T Consensus        24 ~~kD~R~~GskK~iIN~is~i~~~e~v~--~aREAlLdNIDlG~e-------------ly~WK~eeVd~m~~k~~~   84 (126)
T 2rbg_A           24 IFLDVRSSGSKKTTINVFTEIQYQELVT--LIREALLENIDIGYE-------------LFLWKKNEVDIFLKNLEK   84 (126)
T ss_dssp             HHHHHHHHTCSEEEEEEECSSCHHHHHH--HTHHHHHHTTTSEEE-------------EEEECGGGHHHHHHHHTT
T ss_pred             HHHHHHHCCCCEEEEEEECCCCHHHHHH--HHHHHHHHCCCCCEE-------------EEEECHHHHHHHHHHHHH
T ss_conf             9999985588528999854686799999--999998843454528-------------998678999999999998


No 65 
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding, purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=36.58  E-value=19  Score=15.04  Aligned_cols=62  Identities=15%  Similarity=0.221  Sum_probs=25.9

Q ss_pred             HHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCC-CCCCHHHHHHHHC-CCCCCEEEECHHHHHHHHHHH
Q ss_conf             9999997799841499994888899731765311232002-3343469998740-156313530899989889875
Q gi|254780664|r   97 HMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENI-DIGGPSMIRAAAK-NHDYVTILTNPQDYPLFLAEM  170 (536)
Q Consensus        97 ~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnI-DIGGpsmiRAAAK-N~~~V~Vi~dp~dY~~~~~el  170 (536)
                      -.+-++++||+.-.--++.            +.+++.+.+ .||-|-+|+++.= --+.|.|+.++++....+++.
T Consensus       106 ~k~~~~~~gipt~~~~~~~------------~~~ea~~~~~~~g~P~VIKp~~~~gGkGv~v~~~~~e~~~al~~~  169 (424)
T 2yw2_A          106 AKTFMKKYGIPTARYEVFT------------DFEKAKEYVEKVGAPIVVKADGLAAGKGAVVCETVEKAIETLDRF  169 (424)
T ss_dssp             HHHHHHHTTCCBCCEEEES------------CHHHHHHHHHHHCSSEEEEESSCCTTCSEEEESSHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCCC------------CHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEHHHHHHHHHHH
T ss_conf             9999998498963444556------------199999999864997899857876777738885026689999997


No 66 
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=36.47  E-value=19  Score=15.03  Aligned_cols=50  Identities=20%  Similarity=0.177  Sum_probs=40.4

Q ss_pred             CCCEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEH----HHHHHHHHCCCCEEE
Q ss_conf             76136989987545686999999998799999942----768999988995179
Q gi|254780664|r   13 EIAVKTALISVHNKTGVVEFASRLLSRGIKIISTG----GTCQLLEEEGIPVTS   62 (536)
Q Consensus        13 ~~~ikrALiSV~dKtgl~~la~~L~~~g~~iisTg----GTa~~l~~~gi~v~~   62 (536)
                      +-++||.++==--++|+--+|+.|.++|+++..+.    -+.+.|++.||++..
T Consensus        15 ~~~~k~i~~iGiggsG~s~lA~~l~~~G~~V~~~D~~~~~~~~~L~~~gi~~~~   68 (475)
T 1p3d_A           15 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYI   68 (475)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEE
T ss_pred             HHCCCEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCEEEC
T ss_conf             514777999984699999999999968894999908999799999978799987


No 67 
>1rh9_A Endo-beta-mannanase; endo-beta-mannase, retaining, glycoside hydrolase family 5; 1.50A {Solanum lycopersicum} SCOP: c.1.8.3
Probab=36.34  E-value=19  Score=15.02  Aligned_cols=19  Identities=0%  Similarity=-0.094  Sum_probs=14.0

Q ss_pred             CHHHHHHHHHCCCCCEEEE
Q ss_conf             9899999997799841499
Q gi|254780664|r   94 NPAHMKFMQDHELESIDLV  112 (536)
Q Consensus        94 ~~~~~~~l~~~~i~~IDlV  112 (536)
                      .+.+.+.++++|+..|-+=
T Consensus        44 ~~~~l~~~~~~G~N~vR~~   62 (373)
T 1rh9_A           44 VTNTFQQASKYKMNVARTW   62 (373)
T ss_dssp             HHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHHHHHHCCCCEEEEC
T ss_conf             9999999997799399978


No 68 
>1ve4_A ATP phosphoribosyltransferase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.20A {Thermus thermophilus} SCOP: c.94.1.1
Probab=35.89  E-value=10  Score=16.89  Aligned_cols=55  Identities=13%  Similarity=0.199  Sum_probs=24.6

Q ss_pred             HHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEE
Q ss_conf             76899998899517946534881651985532371555355330889899999997799841499994
Q gi|254780664|r   48 GTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVN  115 (536)
Q Consensus        48 GTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~~~~~~~~l~~~~i~~IDlVvvN  115 (536)
                      .|.++|+++|+.+.+..+-.-++..-       .|.|-  ++.-  ++.|+...-++|.-  |+=||-
T Consensus        18 ~~~~ll~~~g~~~~~~~~r~~~~~~~-------~~~i~--~~~~--r~~DIp~~V~~G~~--DlGI~G   72 (206)
T 1ve4_A           18 EAYEVLKRAGLDLPEVEGERTLLHGK-------EGGVA--LLEL--RNKDVPIYVDLGIA--EIGVVG   72 (206)
T ss_dssp             HHHHHHHHTTCCCCCC-----CEECC-------TTSEE--EEEE--CGGGHHHHHHTTSS--SEEEEE
T ss_pred             HHHHHHHHCCCCCCCCCCCEEEECCC-------CCCEE--EEEE--CHHHHHHHHHCCCC--CEEECC
T ss_conf             99999998799986688850573168-------89879--9997--74769999984987--520021


No 69 
>2b82_A APHA, class B acid phosphatase; DDDD acid phosphatase, metallo- enzyme, AMP, hydrolase; HET: ADN; 1.25A {Escherichia coli} SCOP: c.108.1.12 PDB: 2b8j_A* 2hf7_A 1rmt_A* 1n9k_A 1rmq_A 1n8n_A* 1rmy_A* 2g1a_A* 3cz4_A 2heg_A* 1z5g_A 1z5u_A* 1z88_A 2aut_A
Probab=35.64  E-value=16  Score=15.55  Aligned_cols=21  Identities=10%  Similarity=0.123  Sum_probs=10.5

Q ss_pred             CHHHHHHHHC--CCCCEEEECCC
Q ss_conf             9899988512--45531563167
Q gi|254780664|r  350 SEEAADVLAK--KPSMRFLKTSS  370 (536)
Q Consensus       350 ~~eAleiL~~--KKnlRil~~~~  370 (536)
                      -+.|+++|..  ++...|.-+.+
T Consensus        90 ipga~efl~~~~~~Gv~IfyITn  112 (211)
T 2b82_A           90 KEVARQLIDMHVRRGDAIFFVTG  112 (211)
T ss_dssp             CHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             CCCHHHHHHHHHHCCCEEEEEEC
T ss_conf             62099999999976985999808


No 70 
>3fuy_A HFX_CASS1, putative integron gene cassette protein; integron cassette protein, mobIle metagenome, structural genomics, PSI-2; 2.00A {Uncultured bacterium}
Probab=35.16  E-value=7.1  Score=18.08  Aligned_cols=60  Identities=23%  Similarity=0.328  Sum_probs=40.5

Q ss_pred             CCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHC---------CCCCCCCCCEEEEECCCCCCCCH
Q ss_conf             677999968938997296888899999999998764200---------12222348709997366868555
Q gi|254780664|r  430 SNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQ---------ADVKSMTNGSVIASEAFYPFPDG  491 (536)
Q Consensus       430 SNAIv~ak~~~tiGiGaGQ~sRVda~~iA~~KA~~~~~~---------~~~~~~~~g~vlaSDAFFPF~D~  491 (536)
                      -||.|++.  -+||-|+...-|--+-++|-+|....-.-         ...+-+++.-.+.||.|-|=.|-
T Consensus       105 ynamvyvd--livgtgaseveretaeelakeklraalqvdiadehscvtqfemklreellssdsfhpdkde  173 (179)
T 3fuy_A          105 YNAMVYVD--LIVGTGASEVERETAEELAKEKLRAALQVDIADEHSCVTQFEMKLREELLSSDSFHPDKDE  173 (179)
T ss_dssp             CEEEEEEE--EEEETTCCHHHHHHHHHHHHHHHHHHTTBTSBCTTSCEEEEEEEEEEECTTCTTCCTTCGG
T ss_pred             EEEEEEEE--EEEECCHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf             11589999--9860681377588799999999988752160443017889999999997415676887467


No 71 
>2f46_A Hypothetical protein; 7380613, DUF442, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.41A {Neisseria meningitidis Z2491}
Probab=34.93  E-value=20  Score=14.86  Aligned_cols=21  Identities=24%  Similarity=0.493  Sum_probs=9.8

Q ss_pred             HHEECCCCHHHHHHHHCCCCCE
Q ss_conf             1112687989998851245531
Q gi|254780664|r  343 AIIAPTLSEEAADVLAKKPSMR  364 (536)
Q Consensus       343 vIiAP~f~~eAleiL~~KKnlR  364 (536)
                      +-+++-.+++-++.|+.. ++|
T Consensus        24 l~~s~qp~~~~~~~L~~~-Gik   44 (156)
T 2f46_A           24 LYISPQLTKADAEQIAQL-GIK   44 (156)
T ss_dssp             EEEESCCCGGGHHHHHHH-TCC
T ss_pred             EEECCCCCHHHHHHHHHC-CCC
T ss_conf             267189899999999986-997


No 72 
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1
Probab=34.91  E-value=16  Score=15.61  Aligned_cols=28  Identities=21%  Similarity=0.255  Sum_probs=21.9

Q ss_pred             HHEECCCCHHHHHHHH---CCCCCEEEECCC
Q ss_conf             1112687989998851---245531563167
Q gi|254780664|r  343 AIIAPTLSEEAADVLA---KKPSMRFLKTSS  370 (536)
Q Consensus       343 vIiAP~f~~eAleiL~---~KKnlRil~~~~  370 (536)
                      +|||.+++++||..|-   .|.++++..++.
T Consensus        57 lIIAedi~~eaL~~Lv~N~~~g~l~v~aVka   87 (145)
T 1srv_A           57 LIIAEDVEGEALATLVVNKLRGTLSVAAVKA   87 (145)
T ss_dssp             EEEESEECHHHHHHHHHHHHTTSCCEEEEEC
T ss_pred             EEEECCCCHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             9995766789999999998608817999939


No 73 
>2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities, enzyme evolution, hyperthermophilic, lactonase, hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus solfataricus} PDB: 2vc5_A*
Probab=34.90  E-value=20  Score=14.86  Aligned_cols=10  Identities=0%  Similarity=0.212  Sum_probs=4.4

Q ss_pred             CCCHHHHHHH
Q ss_conf             7868898889
Q gi|254780664|r  409 SPTDQELRDM  418 (536)
Q Consensus       409 ~pt~~e~~dL  418 (536)
                      ..+++++..+
T Consensus       295 Gis~e~i~~i  304 (314)
T 2vc7_A          295 GVNEEVIATI  304 (314)
T ss_dssp             TCCHHHHHHH
T ss_pred             CCCHHHHHHH
T ss_conf             9999999999


No 74 
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}
Probab=32.87  E-value=11  Score=16.62  Aligned_cols=29  Identities=24%  Similarity=-0.007  Sum_probs=18.1

Q ss_pred             HHHHHCCCCCCEEE-ECHHHHHHHHHHHHC
Q ss_conf             99874015631353-089998988987530
Q gi|254780664|r  144 IRAAAKNHDYVTIL-TNPQDYPLFLAEMDV  172 (536)
Q Consensus       144 iRAAAKN~~~V~Vi-~dp~dY~~~~~el~~  172 (536)
                      -||-..+-.++.++ +||+++..+++-.+.
T Consensus        34 ~rA~~~GV~~ii~~g~~~~~~~~~~~la~~   63 (301)
T 2xio_A           34 GRAVEIGVKKFMITGGNLQDSKDALHLAQT   63 (301)
T ss_dssp             HHHHHHTEEEEEECCCSHHHHHHHHHHHTT
T ss_pred             HHHHHCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf             999984998899964899999999999842


No 75 
>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*
Probab=32.50  E-value=21  Score=14.59  Aligned_cols=78  Identities=19%  Similarity=0.323  Sum_probs=41.6

Q ss_pred             CCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEE--
Q ss_conf             237155535533088989999999779984149999488889973176531123200233434699987401563135--
Q gi|254780664|r   79 TLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTI--  156 (536)
Q Consensus        79 TLHP~I~ggIL~~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~V--  156 (536)
                      .+.|.++.+   ..-.++|...|+++||..    ||||=|..+.-... ++.+.           +++.-=+|-++.|  
T Consensus        17 ~~~p~l~~s---gqP~~~dl~~L~~~Gikt----VInLr~~~e~~~~~-~e~~~-----------~~~~Gi~~~~iPv~~   77 (157)
T 3gxh_A           17 QQAPQLLSS---GLPNEQQFSLLKQAGVDV----VINLMPDSSKDAHP-DEGKL-----------VTQAGMDYVYIPVDW   77 (157)
T ss_dssp             EEETTEEEE---BCCCHHHHHHHHHTTCCE----EEECSCTTSTTSCT-THHHH-----------HHHTTCEEEECCCCT
T ss_pred             HHCCCCEEC---CCCCHHHHHHHHHCCCCE----EEECCCCCCCCCCC-CHHHH-----------HHHCCCCEEECCCCC
T ss_conf             728442125---898999999999869989----99898766456652-58899-----------997297047578866


Q ss_pred             -EECHHHHHHHHHHHHCCCC
Q ss_conf             -3089998988987530234
Q gi|254780664|r  157 -LTNPQDYPLFLAEMDVNNG  175 (536)
Q Consensus       157 -i~dp~dY~~~~~el~~~~g  175 (536)
                       -..+++...++..+....|
T Consensus        78 ~~p~~e~v~~~~~~i~~~~~   97 (157)
T 3gxh_A           78 QNPKVEDVEAFFAAMDQHKG   97 (157)
T ss_dssp             TSCCHHHHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHHHCCC
T ss_conf             79599999999999986369


No 76 
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Streptococcus pneumoniae TIGR4} SCOP: d.58.18.7
Probab=32.16  E-value=22  Score=14.55  Aligned_cols=30  Identities=27%  Similarity=0.512  Sum_probs=23.4

Q ss_pred             EEEEEEE--CCCCHH-HHHHHHHHCCCEEEEEH
Q ss_conf             9899875--456869-99999998799999942
Q gi|254780664|r   18 TALISVH--NKTGVV-EFASRLLSRGIKIISTG   47 (536)
Q Consensus        18 rALiSV~--dKtgl~-~la~~L~~~g~~iisTg   47 (536)
                      |+.|+|+  ||.||+ .+++.|.+.|..|....
T Consensus         5 k~vitv~g~DrpGIva~vt~~L~~~g~NI~d~~   37 (91)
T 1zpv_A            5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDIS   37 (91)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf             899999908978789999999998799499845


No 77 
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porphyria, structural genomics, riken structural genomics/proteomics initiative; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=31.92  E-value=22  Score=14.53  Aligned_cols=70  Identities=13%  Similarity=0.028  Sum_probs=42.9

Q ss_pred             HHHHCCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHH
Q ss_conf             55330889899999997799841499994888899731765311232002334346999874015631353089998988
Q gi|254780664|r   87 GILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLF  166 (536)
Q Consensus        87 gIL~~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~  166 (536)
                      +|++-|..++-...++++|..+|-+=+.-.-|      -+.  ++.        ..-+++....|.| .|.|+++--..+
T Consensus        12 ~~~~~r~~e~~~~lle~~G~~pi~~P~i~i~~------~p~--~~~--------~~~~~~~~~~~D~-vifTS~n~V~~~   74 (261)
T 1wcw_A           12 AYAGLRRKEAFKALAEKLGFTPLLFPVQATEK------VPV--PEY--------RDQVRALAQGVDL-FLATTGVGVRDL   74 (261)
T ss_dssp             EECCSTTHHHHHHHHHHTTCEEEECCCEEEEE------CCG--GGG--------HHHHHHHHTCCSE-EEECCHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHHCCCEEEECCHHHEEC------CCC--HHH--------HHHHHHHCCCCCE-EEEECHHHHHHH
T ss_conf             86132328999999997799499805466265------892--145--------7899973279999-999798999999


Q ss_pred             HHHHHCC
Q ss_conf             9875302
Q gi|254780664|r  167 LAEMDVN  173 (536)
Q Consensus       167 ~~el~~~  173 (536)
                      ++.+..-
T Consensus        75 ~~~l~~~   81 (261)
T 1wcw_A           75 LEAGKAL   81 (261)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHC
T ss_conf             9999873


No 78 
>1vff_A Beta-glucosidase; glycosyl hydrolase, membrane-bound enzyme, thermostability, TIM barrel, alkylglucosides; 2.50A {Pyrococcus horikoshii} SCOP: c.1.8.4
Probab=31.86  E-value=14  Score=15.88  Aligned_cols=20  Identities=15%  Similarity=0.275  Sum_probs=10.5

Q ss_pred             HHHHHHHCCCCCEEEEEECCE
Q ss_conf             999986005667799996893
Q gi|254780664|r  420 FAFKVVKHVKSNAVVYAKDGR  440 (536)
Q Consensus       420 FA~kv~K~vkSNAIv~ak~~~  440 (536)
                      .+++....- -+-|.+.-||.
T Consensus       308 ~~~~~~~~y-~~Pi~ITENG~  327 (423)
T 1vff_A          308 MALKKASRY-GRPLYITENGI  327 (423)
T ss_dssp             HHHHHHGGG-CSCEEEEECCC
T ss_pred             HHHHHHCCC-CCCEEEECCCC
T ss_conf             443111136-88558854887


No 79 
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=31.80  E-value=22  Score=14.51  Aligned_cols=39  Identities=13%  Similarity=0.296  Sum_probs=15.6

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHEECCCCH----HHHHHHHC
Q ss_conf             45554275421457878865431111268798----99988512
Q gi|254780664|r  320 GIIAFNREVDQEVAKEVIKVFTEAIIAPTLSE----EAADVLAK  359 (536)
Q Consensus       320 GIIa~N~~vd~~~A~~I~~~F~EvIiAP~f~~----eAleiL~~  359 (536)
                      .++-+...++.+....+-.. .+|.+-|+..+    -++|-+..
T Consensus       332 ~~v~~~~~~~~~~l~~ly~~-aDv~v~~S~~Eg~~Lv~~Eama~  374 (482)
T 1uqt_A          332 PLYYLNQHFDRKLLMKIFRY-SDVGLVTPLRDGMNLVAKEYVAA  374 (482)
T ss_dssp             SEEEECSCCCHHHHHHHHHH-CSEEEECCSSBSCCHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHCCC-CEEEEECCCCCCCCCHHHHHHHC
T ss_conf             53521588888898764060-45999577425788589999982


No 80 
>3ke8_A 4-hydroxy-3-methylbut-2-ENYL diphosphate reductase; induced FIT mechanism, FS4-iron-sulfure-cluster, 3Fe-4S, iron, iron-sulfur; HET: EIP; 1.70A {Escherichia coli} PDB: 3ke9_A* 3kef_A* 3kel_A 3kem_A* 3f7t_A
Probab=31.74  E-value=12  Score=16.51  Aligned_cols=31  Identities=16%  Similarity=0.199  Sum_probs=25.7

Q ss_pred             HCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEE
Q ss_conf             519855323715553553308898999999977998414
Q gi|254780664|r   72 IMGGRVKTLHPKIYGGILSIRDNPAHMKFMQDHELESID  110 (536)
Q Consensus        72 il~GRVKTLHP~I~ggIL~~r~~~~~~~~l~~~~i~~ID  110 (536)
                      -.|.+|-||||-||        |+.-++.|++.|+..++
T Consensus        38 ~~~~~vy~lG~iVH--------N~~vv~~L~~~Gv~~v~   68 (326)
T 3ke8_A           38 IYGAPIYVRHEVVH--------NRYVVDSLRERGAIFIE   68 (326)
T ss_dssp             HHCSCEEEESCSSS--------CHHHHHHHHHHTEEEES
T ss_pred             HHCCCEEECCCCCC--------CHHHHHHHHHCCCEECC
T ss_conf             71997877785755--------98999999988799805


No 81 
>1u83_A Phosphosulfolactate synthase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, lyase; 2.20A {Bacillus subtilis} SCOP: c.1.27.1
Probab=31.10  E-value=23  Score=14.43  Aligned_cols=33  Identities=24%  Similarity=0.126  Sum_probs=13.2

Q ss_pred             EECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCE
Q ss_conf             9615686565452016899999985332132004
Q gi|254780664|r  287 IVKHMNPCGVATADTLVEAYRRALSCDPISAFGG  320 (536)
Q Consensus       287 IvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGG  320 (536)
                      ++|=+-++ .+.-+.+.+=...+...|=.-.+||
T Consensus        68 ~vKfg~GT-s~l~~~L~eKI~l~~~~~V~v~~GG  100 (276)
T 1u83_A           68 FVKFGWGT-SLLTKDLEEKISTLKEHDITFFFGG  100 (276)
T ss_dssp             EEEECTTG-GGGCTTHHHHHHHHHHTTCEEEECH
T ss_pred             EEEECCCE-ECCCHHHHHHHHHHHHCCCEEECCC
T ss_conf             88854853-3126899999999998699697896


No 82 
>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4
Probab=30.91  E-value=23  Score=14.41  Aligned_cols=67  Identities=15%  Similarity=0.207  Sum_probs=46.5

Q ss_pred             CCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHH---------------HHHHHHHCCCCEEEHHHHCC
Q ss_conf             015778867761369899875456869999999987999999427---------------68999988995179465348
Q gi|254780664|r    4 FHRKDGDHGEIAVKTALISVHNKTGVVEFASRLLSRGIKIISTGG---------------TCQLLEEEGIPVTSVFDITK   68 (536)
Q Consensus         4 ~~~~~~~~~~~~ikrALiSV~dKtgl~~la~~L~~~g~~iisTgG---------------Ta~~l~~~gi~v~~Vs~~Tg   68 (536)
                      .|+..|+..++||--+.-|+.+...+++..+...+.||+=|--.+               -.+.|.+.||.+..++-..+
T Consensus        13 ~t~~~~~~~~~~i~~~~~tl~~~~~lee~l~~aae~GfdgVEl~~~~~~~~~~~~~~~~~l~~~l~~~GL~i~~i~~~~~   92 (296)
T 2g0w_A           13 MTNANGNLKKCPITISSYTLGTEVSFPKRVKVAAENGFDGIGLRAENYVDALAAGLTDEDMLRILDEHNMKVTEVEYITQ   92 (296)
T ss_dssp             ---------CCCEEECGGGGTTTSCHHHHHHHHHHTTCSEEEEEHHHHHHHHHTTCCHHHHHHHHHHTTCEEEEEECBCC
T ss_pred             HHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             32466874778847888887899999999999999697999974532300044689999999999971997999865545


Q ss_pred             CC
Q ss_conf             81
Q gi|254780664|r   69 FP   70 (536)
Q Consensus        69 fp   70 (536)
                      +.
T Consensus        93 ~~   94 (296)
T 2g0w_A           93 WG   94 (296)
T ss_dssp             CS
T ss_pred             CC
T ss_conf             57


No 83 
>3jyv_I 40S ribosomal protein S16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_I
Probab=30.55  E-value=23  Score=14.37  Aligned_cols=21  Identities=33%  Similarity=0.343  Sum_probs=18.3

Q ss_pred             ECCCCCCHHHHHHHHHHHHHH
Q ss_conf             729688889999999999876
Q gi|254780664|r  444 IGSGQTSRVDSTRFAAIKAHN  464 (536)
Q Consensus       444 iGaGQ~sRVda~~iA~~KA~~  464 (536)
                      -|.|.++..+|+++|+.||-.
T Consensus        65 ~GGG~sgQa~AirlaiaRaLv   85 (138)
T 3jyv_I           65 TGGGHVSQVYAIRQAIAKGLV   85 (138)
T ss_dssp             ESCCTTTHHHHHHHHHHHTTT
T ss_pred             ECCCHHHHHHHHHHHHHHHHH
T ss_conf             657564898699999999999


No 84 
>1o63_A ATP phosphoribosyltransferase; structural genomics; 2.00A {Thermotoga maritima} SCOP: c.94.1.1 PDB: 1o64_A 1usy_E* 1usy_H*
Probab=30.45  E-value=12  Score=16.31  Aligned_cols=27  Identities=15%  Similarity=0.094  Sum_probs=14.0

Q ss_pred             HEECCCCHHHHHHHHCC-CCCEEEECCC
Q ss_conf             11268798999885124-5531563167
Q gi|254780664|r  344 IIAPTLSEEAADVLAKK-PSMRFLKTSS  370 (536)
Q Consensus       344 IiAP~f~~eAleiL~~K-KnlRil~~~~  370 (536)
                      -||-.|-.-+-+.|.++ -+.+++.+..
T Consensus       105 rIATkYpnit~~ff~~~gi~~~ii~l~G  132 (219)
T 1o63_A          105 RIATKFPNVTQRYCESKGWHCRIIPLKG  132 (219)
T ss_dssp             EEEESCHHHHHHHHHHHTCCEEEEECSS
T ss_pred             EEEEHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             6532214499999998399348997569


No 85 
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2
Probab=30.00  E-value=14  Score=15.92  Aligned_cols=85  Identities=16%  Similarity=0.146  Sum_probs=50.1

Q ss_pred             CCCCEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHC
Q ss_conf             77613698998754568699999999879999994276899998899517946534881651985532371555355330
Q gi|254780664|r   12 GEIAVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSI   91 (536)
Q Consensus        12 ~~~~ikrALiSV~dKtgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~   91 (536)
                      ++++=|.|||.=.-+-==..+|+.|.+.|++++-++-....+++.      +++       +++++..++        ++
T Consensus         2 nrL~gKvalITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~------~~~-------l~~~~~~~~--------~D   60 (253)
T 1hxh_A            2 NRLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQL------AAE-------LGERSMFVR--------HD   60 (253)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH------HHH-------HCTTEEEEC--------CC
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH------HHH-------HCCCEEEEE--------EC
T ss_conf             988998899948887899999999998799999997999999999------998-------389659998--------01


Q ss_pred             CCCHHHHHHHHH---CCCCCEEEEEEECC
Q ss_conf             889899999997---79984149999488
Q gi|254780664|r   92 RDNPAHMKFMQD---HELESIDLVVVNLY  117 (536)
Q Consensus        92 r~~~~~~~~l~~---~~i~~IDlVvvNLY  117 (536)
                      -.++++.+.+-+   ....+||++|.|-.
T Consensus        61 vt~~~~~~~~~~~~~~~~g~iDilVnnag   89 (253)
T 1hxh_A           61 VSSEADWTLVMAAVQRRLGTLNVLVNNAG   89 (253)
T ss_dssp             TTCHHHHHHHHHHHHHHHCSCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf             79999999999999998199788998885


No 86 
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- MESO-diaminopimelate ligase; structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis MC58}
Probab=29.75  E-value=24  Score=14.28  Aligned_cols=47  Identities=23%  Similarity=0.138  Sum_probs=33.5

Q ss_pred             CEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHH-----HHHHHHHCCCCEE
Q ss_conf             1369899875456869999999987999999427-----6899998899517
Q gi|254780664|r   15 AVKTALISVHNKTGVVEFASRLLSRGIKIISTGG-----TCQLLEEEGIPVT   61 (536)
Q Consensus        15 ~ikrALiSV~dKtgl~~la~~L~~~g~~iisTgG-----Ta~~l~~~gi~v~   61 (536)
                      +||+..+-=--.+|+--+|+.|.++|+++..+..     +.+.|++.|+++.
T Consensus         3 ~~k~ih~iGigg~Gms~lA~~L~~~G~~V~gsD~~~~~~~~~~L~~~Gi~v~   54 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVY   54 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEE
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCEEE
T ss_conf             7778999985888999999999978992999979999678999997889998


No 87 
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.07A {Escherichia coli K12}
Probab=29.56  E-value=24  Score=14.25  Aligned_cols=10  Identities=20%  Similarity=0.126  Sum_probs=4.4

Q ss_pred             HHHHHCCCCE
Q ss_conf             9999719959
Q gi|254780664|r  493 VEAIKAGVTA  502 (536)
Q Consensus       493 e~aa~~Gi~a  502 (536)
                      |.+.++|+..
T Consensus       442 ~~~~~~~~~~  451 (480)
T 3dmy_A          442 LELQSASKPV  451 (480)
T ss_dssp             HHHHHTTCCE
T ss_pred             HHHHHHCCCE
T ss_conf             9999829986


No 88 
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=29.35  E-value=24  Score=14.23  Aligned_cols=55  Identities=20%  Similarity=0.408  Sum_probs=39.5

Q ss_pred             CCCCCCCEEEEEE--EEECCCC------HHHHHHHHHHCCCEEEEEHHH-------HHHHHHCCCCEEEH
Q ss_conf             8867761369899--8754568------699999999879999994276-------89999889951794
Q gi|254780664|r    9 GDHGEIAVKTALI--SVHNKTG------VVEFASRLLSRGIKIISTGGT-------CQLLEEEGIPVTSV   63 (536)
Q Consensus         9 ~~~~~~~ikrALi--SV~dKtg------l~~la~~L~~~g~~iisTgGT-------a~~l~~~gi~v~~V   63 (536)
                      .++.+.|||+.-|  |-+.+.+      -.+|++.|.+.|++++-.||.       ++-..++|=.|+-|
T Consensus         2 ~~~~~~k~k~V~VF~gS~~~~~~~~~~~a~~lG~~La~~g~~lV~GGG~~GlMgava~ga~~~gG~viGV   71 (216)
T 1ydh_A            2 EDNQRSRFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGGLHVLGI   71 (216)
T ss_dssp             ---CCCSCSEEEEECCSCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCSSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             6430056853999875789969389999999999999879949989981899999998787479955763


No 89 
>1g2q_A Adenine phosphoribosyltransferase 1; dimer, single domain, catalytic loop; 1.50A {Saccharomyces cerevisiae} SCOP: c.61.1.1 PDB: 1g2p_A
Probab=28.88  E-value=21  Score=14.67  Aligned_cols=22  Identities=14%  Similarity=0.283  Sum_probs=14.5

Q ss_pred             CCCCC-EEEECHHHHHHHHHHHH
Q ss_conf             15631-35308999898898753
Q gi|254780664|r  150 NHDYV-TILTNPQDYPLFLAEMD  171 (536)
Q Consensus       150 N~~~V-~Vi~dp~dY~~~~~el~  171 (536)
                      +|+++ .++.||.-+..+++.|.
T Consensus        26 ~f~Dit~ll~dp~~~~~i~~~la   48 (187)
T 1g2q_A           26 LFEDFLPIFRNPGLFQKLIDAFK   48 (187)
T ss_dssp             CEEECHHHHHSHHHHHHHHHHHH
T ss_pred             EEEECCHHHCCHHHHHHHHHHHH
T ss_conf             17708246549999999999999


No 90 
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, structural genomics; HET: 5RP; 2.30A {Bartonella henselae str}
Probab=28.71  E-value=25  Score=14.15  Aligned_cols=15  Identities=7%  Similarity=0.144  Sum_probs=5.9

Q ss_pred             HHHCCCCCCEEEECH
Q ss_conf             874015631353089
Q gi|254780664|r  146 AAAKNHDYVTILTNP  160 (536)
Q Consensus       146 AAAKN~~~V~Vi~dp  160 (536)
                      ..|.+-+.+.+|+|.
T Consensus       128 ~~a~~A~~~IviaD~  142 (255)
T 3hhe_A          128 IVASASRAMFVIADE  142 (255)
T ss_dssp             HHHHTBSCEEEEEEG
T ss_pred             HHHHHCCCEEEEECH
T ss_conf             999735113687332


No 91 
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=28.53  E-value=25  Score=14.13  Aligned_cols=102  Identities=11%  Similarity=0.083  Sum_probs=51.6

Q ss_pred             EEEEE-EEECC---CCHHHHHHHHHHCCCEE--EEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHH
Q ss_conf             69899-87545---68699999999879999--99427689999889951794653488165198553237155535533
Q gi|254780664|r   17 KTALI-SVHNK---TGVVEFASRLLSRGIKI--ISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILS   90 (536)
Q Consensus        17 krALi-SV~dK---tgl~~la~~L~~~g~~i--isTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~   90 (536)
                      +|.|+ +..-.   .-...+|+.|.+.|.++  ++++.-...++..|+++..+...........+.....-.......+.
T Consensus        13 ~~ilf~~~p~~GHv~p~l~la~~L~~rGH~V~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (424)
T 2iya_A           13 RHISFFNIPGHGHVNPSLGIVQELVARGHRVSYAITDEFAAQVKAAGATPVVYDSILPKESNPEESWPEDQESAMGLFLD   92 (424)
T ss_dssp             CEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCEEEECCCCSCCTTCTTCCCCSSHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             84999778716379999999999998889899996841677787669825740776652223211251457899999999


Q ss_pred             CCCCHHHHHHHHHCCCCCEEEEEEECCCH
Q ss_conf             08898999999977998414999948888
Q gi|254780664|r   91 IRDNPAHMKFMQDHELESIDLVVVNLYPF  119 (536)
Q Consensus        91 ~r~~~~~~~~l~~~~i~~IDlVvvNLYPF  119 (536)
                       +-...-....+.+.=...|+|+++.+..
T Consensus        93 -~~~~~~~~~~~~~~~~~pDvvi~~~~~~  120 (424)
T 2iya_A           93 -EAVRVLPQLEDAYADDRPDLIVYDIASW  120 (424)
T ss_dssp             -HHHHHHHHHHHHTTTSCCSEEEEETTCT
T ss_pred             -HHHHHHHHHHHHHHCCCCCEEEECCCCH
T ss_conf             -9999999999998355996898255455


No 92 
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=28.28  E-value=18  Score=15.20  Aligned_cols=20  Identities=30%  Similarity=0.642  Sum_probs=13.8

Q ss_pred             CCCCCCCCCCCCCCCCEEEE
Q ss_conf             23333436788100650576
Q gi|254780664|r  221 VKKQEMRYGENPHQKAALYS  240 (536)
Q Consensus       221 ~~~~~LRYGENPHQ~Aa~Y~  240 (536)
                      .+-.+=||||||.---.+|+
T Consensus        69 rRP~DgRYGeNPNRLq~y~Q   88 (298)
T 1j5w_A           69 RRPTDGRYGENPNRLQRYFQ   88 (298)
T ss_dssp             ECCC-----CCTTCCSEEEE
T ss_pred             CCCCCCCCCCCCCHHCEEEE
T ss_conf             79998876789323110034


No 93 
>3ju2_A Uncharacterized protein SMC04130; structural genomics, PSI-2, TIM barrel protein, protein structure initiative, Zn binding domain; 1.80A {Sinorhizobium meliloti}
Probab=27.80  E-value=26  Score=14.04  Aligned_cols=22  Identities=27%  Similarity=0.410  Sum_probs=12.8

Q ss_pred             ECCCCHHHHHHHHHHCCCEEEE
Q ss_conf             5456869999999987999999
Q gi|254780664|r   24 HNKTGVVEFASRLLSRGIKIIS   45 (536)
Q Consensus        24 ~dKtgl~~la~~L~~~g~~iis   45 (536)
                      .+..++++....+.+.|++=|-
T Consensus        16 ~~~~~l~e~l~~~a~~G~~~IE   37 (284)
T 3ju2_A           16 REQCGFAEAVDICLKHGITAIA   37 (284)
T ss_dssp             TTTCCHHHHHHHHHHTTCCEEE
T ss_pred             CCCCCHHHHHHHHHHHCCCEEE
T ss_conf             5899999999999981999899


No 94 
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, alternative splicing, cell membrane, glycoprotein, ION transport, membrane; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=27.79  E-value=26  Score=14.04  Aligned_cols=88  Identities=13%  Similarity=0.098  Sum_probs=41.0

Q ss_pred             EEEEEECCCCHHHHHHHHHHCCCE-EEE--EHHHH----HHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHC
Q ss_conf             899875456869999999987999-999--42768----99998899517946534881651985532371555355330
Q gi|254780664|r   19 ALISVHNKTGVVEFASRLLSRGIK-IIS--TGGTC----QLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSI   91 (536)
Q Consensus        19 ALiSV~dKtgl~~la~~L~~~g~~-iis--TgGTa----~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~   91 (536)
                      -.+...|-.....-+..|.+.|+. ||.  +.+++    .+..+.+||+...+--+. .  ...-+=.+.|-....    
T Consensus        39 ~~~~~~d~~~~~~~~~~l~~~gV~aiiGp~~s~~~~~v~~~~~~~~iP~is~s~~~~-~--~~~~~~r~~p~~~~a----  111 (823)
T 3kg2_A           39 DNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTD-G--THPFVIQMRPDLKGA----  111 (823)
T ss_dssp             EEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECSCCCS-S--CCSSEEECSCCCHHH----
T ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCC-C--CCCEEEEECCCHHHH----
T ss_conf             997089989999999999866987999899718999999999867981998453789-8--896699958289999----


Q ss_pred             CCCHHHHHHHHHCCCCCEEEEEEECCC
Q ss_conf             889899999997799841499994888
Q gi|254780664|r   92 RDNPAHMKFMQDHELESIDLVVVNLYP  118 (536)
Q Consensus        92 r~~~~~~~~l~~~~i~~IDlVvvNLYP  118 (536)
                           =.+-++.+|+..+-++.-|=|-
T Consensus       112 -----i~~ll~~~~W~~vaiiyd~~~g  133 (823)
T 3kg2_A          112 -----LLSLIEYYQWDKFAYLYDSDRG  133 (823)
T ss_dssp             -----HHHHHHHTTCSEEEEEECGGGC
T ss_pred             -----HHHHHHHCCCCEEEEEEECCHH
T ss_conf             -----9999998799899999979553


No 95 
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=27.56  E-value=26  Score=14.01  Aligned_cols=17  Identities=18%  Similarity=0.145  Sum_probs=8.1

Q ss_pred             CCCCCCCHHHHHHHHCC
Q ss_conf             12221200116776424
Q gi|254780664|r  262 NNINDLDAAFELVSEFR  278 (536)
Q Consensus       262 NNllD~daA~~lv~ef~  278 (536)
                      ..+.+.+.+++++.+..
T Consensus       153 ~~~~~~~~~~~l~~~~~  169 (260)
T 1k77_A          153 YLFSSQYQALAIVEEVA  169 (260)
T ss_dssp             BSCCSHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHCC
T ss_conf             24588999999999608


No 96 
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus HB8} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=27.45  E-value=26  Score=14.00  Aligned_cols=18  Identities=6%  Similarity=0.028  Sum_probs=7.9

Q ss_pred             CCHHHHHHHHCCCCCCCEEE
Q ss_conf             20011677642455672799
Q gi|254780664|r  267 LDAAFELVSEFRSQDCAACV  286 (536)
Q Consensus       267 ~daA~~lv~ef~~~~~Pa~v  286 (536)
                      +..-++.+++..  +.|-|+
T Consensus       190 ~~~~i~~ik~~t--~~Pv~v  207 (271)
T 1ujp_A          190 VKDLVRRIKART--ALPVAV  207 (271)
T ss_dssp             CHHHHHHHHTTC--CSCEEE
T ss_pred             HHHHHHHHHCCC--CCCEEE
T ss_conf             899998751056--897599


No 97 
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductase; trilobal strucure, open alpha/beta, 3Fe-4S, iron, iron- sulfur; 1.65A {Aquifex aeolicus}
Probab=27.32  E-value=16  Score=15.57  Aligned_cols=30  Identities=27%  Similarity=0.363  Sum_probs=24.0

Q ss_pred             CCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEE
Q ss_conf             19855323715553553308898999999977998414
Q gi|254780664|r   73 MGGRVKTLHPKIYGGILSIRDNPAHMKFMQDHELESID  110 (536)
Q Consensus        73 l~GRVKTLHP~I~ggIL~~r~~~~~~~~l~~~~i~~ID  110 (536)
                      -+++|-||||-||        |+.-++.|++.|+..+|
T Consensus        30 ~~~~vy~lG~iVH--------N~~vv~~L~~~GV~~~~   59 (297)
T 3dnf_A           30 SQGKVYTLGPIIH--------NPQEVNRLKNLGVFPSQ   59 (297)
T ss_dssp             CCSCEEESSCSSS--------CHHHHHHHHHHTEEECC
T ss_pred             CCCCEEEECCCCC--------CHHHHHHHHHCCCEECC
T ss_conf             5997898588868--------98999999968998754


No 98 
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=27.27  E-value=26  Score=13.98  Aligned_cols=110  Identities=18%  Similarity=0.257  Sum_probs=60.9

Q ss_pred             HCCCCCEEEEEECCE-------------------EEEECCCCCCHHHHHHHHHHHHHHH----HHCCCC---------CC
Q ss_conf             005667799996893-------------------8997296888899999999998764----200122---------22
Q gi|254780664|r  426 KHVKSNAVVYAKDGR-------------------TVGIGSGQTSRVDSTRFAAIKAHNI----SAQADV---------KS  473 (536)
Q Consensus       426 K~vkSNAIv~ak~~~-------------------tiGiGaGQ~sRVda~~iA~~KA~~~----~~~~~~---------~~  473 (536)
                      +.-+-=-|.++|=|+                   -|=+|.|.++=-++++.|.+.--..    ..+...         .-
T Consensus       600 ~~GrrPrillakmG~dgH~~ga~~iA~~F~d~GfeV~~~~~f~TpeE~a~aA~e~~a~vvgics~d~~h~~lvp~l~~~L  679 (762)
T 2xij_A          600 REGRRPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDADVHAVGVSTLAAGHKTLVPELIKEL  679 (762)
T ss_dssp             HHSSCCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHHH
T ss_pred             HHCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf             82999759996578774410199999999857902852787789999999999769999999268765688999999999


Q ss_pred             CCCC---EEEEECCCCCCCCHHHHHHHCCCCEEEECCCCCCHH--HH---HHHHHHC-----CCEEEECCCCCCCC
Q ss_conf             3487---099973668685558999971995999389877988--99---9999875-----97799747854479
Q gi|254780664|r  474 MTNG---SVIASEAFYPFPDGIVEAIKAGVTAVIQPGGSVRDS--EA---ITVADQH-----GIAMVFTGIRHFRH  536 (536)
Q Consensus       474 ~~~g---~vlaSDAFFPF~D~ie~aa~~Gi~aIiqPGGSirD~--ev---I~aan~~-----gi~m~fTg~RhF~H  536 (536)
                      +..|   ..+.=-+-.| ++-.+.+.++||.+|+-||-+|.|.  +|   |+.+-+.     .-++||....|-+|
T Consensus       680 k~~g~~~i~VvvgGviP-~~d~~~l~~aGV~~if~pg~~i~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  754 (762)
T 2xij_A          680 NSLGRPDILVMCGGVIP-PQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDIEKCLEKKQQSVAENLYFQSHHHHHH  754 (762)
T ss_dssp             HHTTCTTSEEEEEESCC-GGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHHHHHHHC-------------------
T ss_pred             HHCCCCCCEEEEECCCC-HHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             96699986799807788-7889999986988783999829999999999999999888988876111220233334


No 99 
>2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2; phosphorylation, nucleotide biosynthesis, transferase; 2.55A {Homo sapiens} PDB: 2c4k_A*
Probab=26.98  E-value=23  Score=14.31  Aligned_cols=64  Identities=16%  Similarity=0.099  Sum_probs=35.5

Q ss_pred             HCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCEEEE
Q ss_conf             00566779999689389972968888999999999987642001222234870999736686855589999719959993
Q gi|254780664|r  426 KHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQADVKSMTNGSVIASEAFYPFPDGIVEAIKAGVTAVIQ  505 (536)
Q Consensus       426 K~vkSNAIv~ak~~~tiGiGaGQ~sRVda~~iA~~KA~~~~~~~~~~~~~~g~vlaSDAFFPF~D~ie~aa~~Gi~aIiq  505 (536)
                      --||---++++.|-    |.+|.|     .--|++..++.+..       +-.++++-+.|. .|.++.+.+.+|.-|+-
T Consensus       268 GDVkGk~vIIVDDi----IdTGgT-----l~~aa~~Lk~~GA~-------~V~~~~THgvfs-~~A~~~l~~s~i~~Iv~  330 (379)
T 2ji4_A          268 GDVGGRIAIIVDDI----IDDVDS-----FLAAAETLKERGAY-------KIFVMATHGLLS-SDAPRRIEESAIDEVVV  330 (379)
T ss_dssp             SCCTTSEEEEEEEE----ECSCHH-----HHHHHHHHHHTTCC-------EEEEEEEEECCC-TTHHHHHHHSSCCEEEE
T ss_pred             ECEEEEEEEEECCH----HHHHHH-----HHHHHHHHHHCCCC-------EEEEEEECCCCC-CHHHHHHHHCCCCEEEE
T ss_conf             01200389995434----331266-----99999999976998-------379999797688-16999997289998998


Q ss_pred             C
Q ss_conf             8
Q gi|254780664|r  506 P  506 (536)
Q Consensus       506 P  506 (536)
                      -
T Consensus       331 T  331 (379)
T 2ji4_A          331 T  331 (379)
T ss_dssp             E
T ss_pred             C
T ss_conf             6


No 100
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=26.88  E-value=26  Score=13.93  Aligned_cols=22  Identities=9%  Similarity=-0.037  Sum_probs=13.8

Q ss_pred             EECCCCHHHHHHHHHHCCCEEE
Q ss_conf             7545686999999998799999
Q gi|254780664|r   23 VHNKTGVVEFASRLLSRGIKII   44 (536)
Q Consensus        23 V~dKtgl~~la~~L~~~g~~ii   44 (536)
                      .+.+..|.+-.....+.|++-|
T Consensus        10 ~~~~~~l~~~l~~aa~~G~~~i   31 (278)
T 1i60_A           10 TLENSNLKLDLELCEKHGYDYI   31 (278)
T ss_dssp             GTTTCCHHHHHHHHHHTTCSEE
T ss_pred             HCCCCCHHHHHHHHHHHCCCEE
T ss_conf             3799999999999999597999


No 101
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655}
Probab=26.59  E-value=21  Score=14.62  Aligned_cols=22  Identities=9%  Similarity=0.185  Sum_probs=9.0

Q ss_pred             HHHHHCCCCCCCEEEEECCCCC
Q ss_conf             6776424556727999615686
Q gi|254780664|r  272 ELVSEFRSQDCAACVIVKHMNP  293 (536)
Q Consensus       272 ~lv~ef~~~~~Pa~vIvKH~NP  293 (536)
                      ++|++|.+.+..++.|=-...|
T Consensus       102 rtv~~~~~aGvagi~IEDq~~p  123 (298)
T 3eoo_A          102 RTIRSFIKAGVGAVHLEDQVGQ  123 (298)
T ss_dssp             HHHHHHHHTTCSEEEEECBCCC
T ss_pred             HHHHHHHHCCCCEEEECCCCCC
T ss_conf             9999999759967863697765


No 102
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase; 2.09A {Bartonella henselae str} PDB: 3enn_A 3emk_A
Probab=26.45  E-value=27  Score=13.88  Aligned_cols=84  Identities=21%  Similarity=0.274  Sum_probs=50.6

Q ss_pred             CCCEEEEEEEEECCCCH-HHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHC
Q ss_conf             76136989987545686-99999999879999994276899998899517946534881651985532371555355330
Q gi|254780664|r   13 EIAVKTALISVHNKTGV-VEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSI   91 (536)
Q Consensus        13 ~~~ikrALiSV~dKtgl-~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~   91 (536)
                      +++=|.|||.=.-+ || ..+|+.|.+.|+.++-++-....|++.      +++       +++++.+..        .+
T Consensus        24 ~L~gK~alVTGas~-GIG~aia~~la~~Ga~V~i~~r~~~~l~~~------~~~-------~g~~~~~~~--------~D   81 (266)
T 3grp_A           24 KLTGRKALVTGATG-GIGEAIARCFHAQGAIVGLHGTREDKLKEI------AAD-------LGKDVFVFS--------AN   81 (266)
T ss_dssp             CCTTCEEEESSTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHH------HHH-------HCSSEEEEE--------CC
T ss_pred             CCCCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHH------HHH-------HCCCEEEEE--------EC
T ss_conf             78999899938786-899999999998799999997999999999------998-------399779999--------01


Q ss_pred             CCCHHHHHHHHH---CCCCCEEEEEEECCC
Q ss_conf             889899999997---799841499994888
Q gi|254780664|r   92 RDNPAHMKFMQD---HELESIDLVVVNLYP  118 (536)
Q Consensus        92 r~~~~~~~~l~~---~~i~~IDlVvvNLYP  118 (536)
                      -.++++.+++-+   .....||++|.|=.-
T Consensus        82 v~~~~~v~~~~~~~~~~~g~iDiLVnnAg~  111 (266)
T 3grp_A           82 LSDRKSIKQLAEVAEREMEGIDILVNNAGI  111 (266)
T ss_dssp             TTSHHHHHHHHHHHHHHHTSCCEEEECCCC
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf             799999999999999980998399989967


No 103
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A*
Probab=26.41  E-value=27  Score=13.87  Aligned_cols=83  Identities=17%  Similarity=0.165  Sum_probs=44.9

Q ss_pred             HHHHHHHHH---CCCEEEEEHH-HHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf             999999998---7999999427-689999889951794653488165198553237155535533088989999999779
Q gi|254780664|r   30 VEFASRLLS---RGIKIISTGG-TCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDNPAHMKFMQDHE  105 (536)
Q Consensus        30 ~~la~~L~~---~g~~iisTgG-Ta~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~~~~~~~~l~~~~  105 (536)
                      ..|++.+.+   .++..++|+- |+...++.|||+.+.+++..                                     
T Consensus        37 ~~L~~~~~~~~l~~i~~V~tS~~t~~~a~~~gi~~~~~~~~~~-------------------------------------   79 (229)
T 1lk5_A           37 KLLGEKLKRGEISDIVGVPTSYQAKLLAIEHDIPIASLDQVDA-------------------------------------   79 (229)
T ss_dssp             HHHHHHHHTTSSCSCEEEESSHHHHHHHHHTTCCBCCGGGCSC-------------------------------------
T ss_pred             HHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCC-------------------------------------
T ss_conf             9999987525556507874569999999977994544122564-------------------------------------


Q ss_pred             CCCEEEEEEECCCHHHHHCCCC-CHHHHHHCCCCCCHHHHHH--HHCCCCCCEEEECHHHH
Q ss_conf             9841499994888899731765-3112320023343469998--74015631353089998
Q gi|254780664|r  106 LESIDLVVVNLYPFEESFCRED-DYYTMVENIDIGGPSMIRA--AAKNHDYVTILTNPQDY  163 (536)
Q Consensus       106 i~~IDlVvvNLYPF~~~v~~~~-~~~~~IEnIDIGGpsmiRA--AAKN~~~V~Vi~dp~dY  163 (536)
                         ||+.+=           ++ ..+.-.-.|-=||.+|+|-  -|.+-+...+|+|..-+
T Consensus        80 ---iDv~iD-----------GaDevd~~l~liKGGGGal~rEKivA~~a~~~i~I~D~~K~  126 (229)
T 1lk5_A           80 ---IDVAVD-----------GADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVLVDERKL  126 (229)
T ss_dssp             ---EEEEEE-----------CCSEECTTCCEECCTTSCHHHHHHHHHTEEEEEEEEEGGGB
T ss_pred             ---EEEEEC-----------CHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf             ---117841-----------62443400576762006788899999853036999742210


No 104
>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=26.20  E-value=17  Score=15.31  Aligned_cols=22  Identities=23%  Similarity=0.265  Sum_probs=19.4

Q ss_pred             ECCCCCCHHHHHHHHHHHHHHH
Q ss_conf             7296888899999999998764
Q gi|254780664|r  444 IGSGQTSRVDSTRFAAIKAHNI  465 (536)
Q Consensus       444 iGaGQ~sRVda~~iA~~KA~~~  465 (536)
                      -|.|.++..+|+++|+.||-..
T Consensus        73 ~GGG~sgQA~AiRlaIARAL~~   94 (146)
T 2zkq_i           73 KGGGHVAQIYAIRQSISKALVA   94 (146)
T ss_dssp             ESSCHHHHHHHHHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHHHH
T ss_conf             5786008871999999999998


No 105
>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomerase; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A
Probab=26.17  E-value=18  Score=15.17  Aligned_cols=34  Identities=18%  Similarity=0.233  Sum_probs=16.6

Q ss_pred             HHHHHHHCCCEEEE---EHHHHHHHHHCCCCEEEHHH
Q ss_conf             99999987999999---42768999988995179465
Q gi|254780664|r   32 FASRLLSRGIKIIS---TGGTCQLLEEEGIPVTSVFD   65 (536)
Q Consensus        32 la~~L~~~g~~iis---TgGTa~~l~~~gi~v~~Vs~   65 (536)
                      |-+-|.+.+.-++-   .+.+|+.+.++|.++.-+|.
T Consensus        11 lr~ll~~~~~~~~~~~~D~~SA~~~e~aGf~ai~~ss   47 (295)
T 1s2w_A           11 LKQMLNSKDLEFIMEAHNGLSARIVQEAGFKGIWGSG   47 (295)
T ss_dssp             HHHHHHSSSCEEEEEECSHHHHHHHHHHTCSCEEECC
T ss_pred             HHHHHHCCCCEEEECCCCHHHHHHHHHCCCCEEEECH
T ss_conf             9999727997896167789999999985999998156


No 106
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol- phosphate, lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=26.07  E-value=27  Score=13.83  Aligned_cols=19  Identities=21%  Similarity=0.373  Sum_probs=8.4

Q ss_pred             CCCCCCCCCHHHHHHHHCC
Q ss_conf             8312221200116776424
Q gi|254780664|r  260 SYNNINDLDAAFELVSEFR  278 (536)
Q Consensus       260 SYNNllD~daA~~lv~ef~  278 (536)
                      +.+|-...+..+.++.++.
T Consensus        72 Al~~g~~~~~~~~~~~~~~   90 (262)
T 1rd5_A           72 ALASGTTMDAVLEMLREVT   90 (262)
T ss_dssp             HHTTTCCHHHHHHHHHHHG
T ss_pred             CCCCCCCHHHHHHHHHHHC
T ss_conf             4356700056676654310


No 107
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, translation, tRNA processing, hydrolase, structural genomics; 2.80A {Homo sapiens}
Probab=26.07  E-value=27  Score=13.83  Aligned_cols=70  Identities=11%  Similarity=0.098  Sum_probs=30.1

Q ss_pred             EEEECCEEEEECCCCCCHH-----HHHHHHHHHHHHHHHC--CCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCEEE
Q ss_conf             9996893899729688889-----9999999998764200--122223487099973668685558999971995999
Q gi|254780664|r  434 VYAKDGRTVGIGSGQTSRV-----DSTRFAAIKAHNISAQ--ADVKSMTNGSVIASEAFYPFPDGIVEAIKAGVTAVI  504 (536)
Q Consensus       434 v~ak~~~tiGiGaGQ~sRV-----da~~iA~~KA~~~~~~--~~~~~~~~g~vlaSDAFFPF~D~ie~aa~~Gi~aIi  504 (536)
                      |+++++++|+.|.-++.+-     .+--.|+.+|......  ......++|+.|..- -.|-+-+...+..+||+-|+
T Consensus        51 ViV~~g~IIa~g~N~~~~~~d~t~HaEi~ai~~a~~~~~~~~~~~~~~l~~~tlYtT-~EPC~mCa~ai~~agI~rVv  127 (189)
T 3dh1_A           51 LMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSPSEVFEHTVLYVT-VEPCIMCAAALRLMKIPLVV  127 (189)
T ss_dssp             EEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHHHHCCCHHHHHTTEEEEEE-ECCBHHHHHHHHHHTCCEEE
T ss_pred             EEEECCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC-CCCHHHHHHHHHHHCCCEEE
T ss_conf             999899899986144555788776489999999999998741125432578546852-48819999999995998799


No 108
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*
Probab=25.77  E-value=28  Score=13.79  Aligned_cols=31  Identities=10%  Similarity=0.153  Sum_probs=19.8

Q ss_pred             HHCCCCCCHHHHH--HHHCCCCCCEEEECHHHH
Q ss_conf             2002334346999--874015631353089998
Q gi|254780664|r  133 VENIDIGGPSMIR--AAAKNHDYVTILTNPQDY  163 (536)
Q Consensus       133 IEnIDIGGpsmiR--AAAKN~~~V~Vi~dp~dY  163 (536)
                      .-.|-=||-+|+|  .-|.+-+...+|+|..-+
T Consensus        95 l~liKGgGGal~rEKivA~~a~~~i~I~DesK~  127 (227)
T 1uj6_A           95 LALIKGMGGALLREKIVERVAKEFIVIADHTKK  127 (227)
T ss_dssp             GEEECCTTSCHHHHHHHHHTEEEEEEEEEGGGB
T ss_pred             CCEEECCCHHHHHHHHHHHHHHCEEEEECHHHH
T ss_conf             002423618889999999850117999622240


No 109
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=25.56  E-value=28  Score=13.77  Aligned_cols=16  Identities=19%  Similarity=0.578  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHCCCEEE
Q ss_conf             6999999998799999
Q gi|254780664|r   29 VVEFASRLLSRGIKII   44 (536)
Q Consensus        29 l~~la~~L~~~g~~ii   44 (536)
                      -...++.|.+.++.++
T Consensus        58 a~~~~~~L~~~~v~~i   73 (356)
T 3ipc_A           58 GISVANKFVADGVKFV   73 (356)
T ss_dssp             HHHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHHHCCCEEE
T ss_conf             9999999997799099


No 110
>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.14.1.1 PDB: 1gix_L* 1hnw_I* 1hnx_I* 1hnz_I* 1hr0_I 1i94_I* 1i95_I* 1i96_I* 1i97_I* 1ibk_I* 1ibl_I* 1ibm_I 1j5e_I 1jgo_L* 1jgp_L* 1jgq_L* 1ml5_L* 1n32_I* 1n33_I* 1n34_I ...
Probab=25.51  E-value=18  Score=15.17  Aligned_cols=22  Identities=18%  Similarity=0.412  Sum_probs=18.8

Q ss_pred             ECCCCCCHHHHHHHHHHHHHHH
Q ss_conf             7296888899999999998764
Q gi|254780664|r  444 IGSGQTSRVDSTRFAAIKAHNI  465 (536)
Q Consensus       444 iGaGQ~sRVda~~iA~~KA~~~  465 (536)
                      -|.|.++..+|+++|+.||-..
T Consensus        66 ~GGG~sgQa~Air~aiaRaL~~   87 (128)
T 2vqe_I           66 RGGGKSGQIDAIKLGIARALVQ   87 (128)
T ss_dssp             ESSCHHHHHHHHHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHHHH
T ss_conf             7886638999999999999999


No 111
>1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.90A {Enterococcus faecalis V583} SCOP: c.1.15.6
Probab=24.81  E-value=29  Score=13.67  Aligned_cols=69  Identities=19%  Similarity=0.262  Sum_probs=34.3

Q ss_pred             CCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHC-CCCCHHHHHHCCCCCCHHHHHHHHCC
Q ss_conf             85532371555355330889899999997799841499994888899731-76531123200233434699987401
Q gi|254780664|r   75 GRVKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFC-REDDYYTMVENIDIGGPSMIRAAAKN  150 (536)
Q Consensus        75 GRVKTLHP~I~ggIL~~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~-~~~~~~~~IEnIDIGGpsmiRAAAKN  150 (536)
                      |=|-+||..+-|-+--.-+....++.++++|..   +-||---|..+.+. .....++-|||.    ..+||..||.
T Consensus        38 giv~~l~~~~~GevW~~~~i~~~k~~ie~~GL~---~~vVEs~pvhe~Ik~g~~~~d~~Ie~~----~~sirnla~~  107 (367)
T 1tz9_A           38 GVVGTLLNKLPGDVWTVAEIQALKQSVEQEGLA---LLGIESVAIHDAIKAGTDQRDHYIDNY----RQTLRNLGKC  107 (367)
T ss_dssp             EEEECCSSSCTTCCCCHHHHHHHHHHHHHTTCE---EEEECSCCCCHHHHHTCSTHHHHHHHH----HHHHHHHHHT
T ss_pred             CHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCE---EEEEECCCCHHHHHCCCHHHHHHHHHH----HHHHHHHHHC
T ss_conf             277745489999989999999999999976996---998737884798864986699999999----9999999966


No 112
>3ofo_I 30S ribosomal protein S9; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_I* 3iy8_I 2wwl_I 3ofp_I 2qal_I* 1p6g_I 1p87_I 2aw7_I 2avy_I 2i2u_I 2i2p_I* 2qan_I* 2qb9_I* 2qbb_I* 2qbd_I 2qbf_I 2qbh_I* 2qbj_I* 2qou_I* 2qow_I* ...
Probab=24.79  E-value=19  Score=15.01  Aligned_cols=21  Identities=19%  Similarity=0.294  Sum_probs=17.4

Q ss_pred             ECCCCCCHHHHHHHHHHHHHH
Q ss_conf             729688889999999999876
Q gi|254780664|r  444 IGSGQTSRVDSTRFAAIKAHN  464 (536)
Q Consensus       444 iGaGQ~sRVda~~iA~~KA~~  464 (536)
                      -|.|.++..+|+++|+.||-.
T Consensus        65 ~GGG~sgQa~Air~aiaraL~   85 (127)
T 3ofo_I           65 KGGGISGQAGAIRHGITRALM   85 (127)
T ss_dssp             ESSCHHHHHHHHHHHHHHHTT
T ss_pred             ECCCHHHHHHHHHHHHHHHHH
T ss_conf             789766899999999999999


No 113
>1z7m_E ATP phosphoribosyltransferase; ATP-PRT, histidine biosynthesis, hiszg, allosteric, evolution; 2.90A {Lactococcus lactis} SCOP: c.94.1.1 PDB: 1z7n_E*
Probab=24.59  E-value=18  Score=15.08  Aligned_cols=15  Identities=27%  Similarity=0.333  Sum_probs=8.7

Q ss_pred             HHHHHHHHCCCCEEE
Q ss_conf             768999988995179
Q gi|254780664|r   48 GTCQLLEEEGIPVTS   62 (536)
Q Consensus        48 GTa~~l~~~gi~v~~   62 (536)
                      .|.++|+++|+++.+
T Consensus        14 ~t~~ll~~~Gl~~~~   28 (208)
T 1z7m_E           14 QVTKLLENADYDVEP   28 (208)
T ss_dssp             HHHHHHHTTTCCCCC
T ss_pred             HHHHHHHHCCCCCCC
T ss_conf             999999987998555


No 114
>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12
Probab=24.44  E-value=24  Score=14.18  Aligned_cols=52  Identities=19%  Similarity=0.259  Sum_probs=25.7

Q ss_pred             HHCCCCCEEEEEEEC--CCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCC-EEEECHHHHHHHHHHH
Q ss_conf             977998414999948--88899731765311232002334346999874015631-3530899989889875
Q gi|254780664|r  102 QDHELESIDLVVVNL--YPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYV-TILTNPQDYPLFLAEM  170 (536)
Q Consensus       102 ~~~~i~~IDlVvvNL--YPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V-~Vi~dp~dY~~~~~el  170 (536)
                      ......-||. =|.|  ++|++      +.++++          -||.+.+...+ ++-+||+++...++-.
T Consensus         7 ~~~~~~lIDt-H~HL~~~~~~~------d~~~vl----------~~a~~~gv~~ii~~~~~~~~~~~~~~l~   61 (268)
T 1j6o_A            7 HHHHHHMVDT-HAHLHFHQFDD------DRNAVI----------SSFEENNIEFVVNVGVNLEDSKKSLDLS   61 (268)
T ss_dssp             --CCCCEEEE-EECTTSGGGTT------THHHHH----------HTTTTTTEEEEEEECSSHHHHHHHHHHH
T ss_pred             CCCCCCEEEE-CCCCCCHHHCC------CHHHHH----------HHHHHCCCCEEEEECCCHHHHHHHHHHH
T ss_conf             4367877985-34789724465------999999----------9999889988999059999999999998


No 115
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor}
Probab=24.26  E-value=29  Score=13.60  Aligned_cols=99  Identities=12%  Similarity=0.165  Sum_probs=44.2

Q ss_pred             CHHHHHHHHCCCCCCCEEEE-ECCCCCCCCCCCCHHHHHHHHHHHHCCC--------CCC------CEEEEE---CCCC-
Q ss_conf             00116776424556727999-6156865654520168999999853321--------320------045554---2754-
Q gi|254780664|r  268 DAAFELVSEFRSQDCAACVI-VKHMNPCGVATADTLVEAYRRALSCDPI--------SAF------GGIIAF---NREV-  328 (536)
Q Consensus       268 daA~~lv~ef~~~~~Pa~vI-vKH~NPCGvA~~~~~~~Ay~~A~~~DP~--------SAF------GGIIa~---N~~v-  328 (536)
                      +..++++..+.+.+...+=| |-+.+|  +|=|..+-.|..+|++....        ..+      =-++.+   |--. 
T Consensus        34 e~s~~~l~~l~~~G~D~iEiGiPfSDP--vaDGpvIq~a~~raL~~G~~~~~~~~~~~~~r~~~~~~p~vlM~Y~N~i~~  111 (271)
T 3nav_A           34 EQSLAIMQTLIDAGADALELGMPFSDP--LADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLVYA  111 (271)
T ss_dssp             HHHHHHHHHHHHTTCSSEEEECCCCCG--GGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEECHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCC--CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHH
T ss_conf             899999999997699999978998887--776899999988877648607667667766420267888799975046655


Q ss_pred             --CHHHHHHHHHHHHHHHEECCCCHHHHHHHH---CCCCCEEEEC
Q ss_conf             --214578788654311112687989998851---2455315631
Q gi|254780664|r  329 --DQEVAKEVIKVFTEAIIAPTLSEEAADVLA---KKPSMRFLKT  368 (536)
Q Consensus       329 --d~~~A~~I~~~F~EvIiAP~f~~eAleiL~---~KKnlRil~~  368 (536)
                        -++.++...+..++++|-||--.|..+.+.   ++.++.++.+
T Consensus       112 ~G~e~F~~~~~~~Gv~GviipDLp~ee~~~~~~~~~~~gl~~I~l  156 (271)
T 3nav_A          112 RGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQPIFI  156 (271)
T ss_dssp             TCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEEEE
T ss_pred             CCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             289999999987699489945898156599999987679717999


No 116
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=24.08  E-value=30  Score=13.58  Aligned_cols=15  Identities=0%  Similarity=0.025  Sum_probs=7.1

Q ss_pred             HHHHHHCCCCCEEEEEEE
Q ss_conf             999997799841499994
Q gi|254780664|r   98 MKFMQDHELESIDLVVVN  115 (536)
Q Consensus        98 ~~~l~~~~i~~IDlVvvN  115 (536)
                      .++++++|+   +++++|
T Consensus        28 ~~~a~~~G~---~~~~~~   42 (291)
T 3l49_A           28 IAEIERLGG---TAIALD   42 (291)
T ss_dssp             HHHHHHTTC---EEEEEE
T ss_pred             HHHHHHCCC---EEEEEE
T ss_conf             999997499---999993


No 117
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=24.04  E-value=30  Score=13.57  Aligned_cols=16  Identities=6%  Similarity=0.324  Sum_probs=8.3

Q ss_pred             CCCCEEEEEEEEECCC
Q ss_conf             7761369899875456
Q gi|254780664|r   12 GEIAVKTALISVHNKT   27 (536)
Q Consensus        12 ~~~~ikrALiSV~dKt   27 (536)
                      ++.+++-|+|+|||..
T Consensus        10 ~p~~~~~avitvsD~~   25 (169)
T 1y5e_A           10 APKEVRCKIVTISDTR   25 (169)
T ss_dssp             --CCCEEEEEEECSSC
T ss_pred             CCCCCEEEEEEECCCC
T ss_conf             7878789999981888


No 118
>2aee_A OPRT, oprtase, orotate phosphoribosyltransferase; structural genomics, PSI, protein structure initiative; 1.95A {Streptococcus pyogenes} SCOP: c.61.1.1
Probab=23.96  E-value=30  Score=13.56  Aligned_cols=25  Identities=20%  Similarity=0.244  Sum_probs=11.2

Q ss_pred             EEEEECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             79996156865654520168999999853
Q gi|254780664|r  284 ACVIVKHMNPCGVATADTLVEAYRRALSC  312 (536)
Q Consensus       284 a~vIvKH~NPCGvA~~~~~~~Ay~~A~~~  312 (536)
                      -|+||--.--    +|.++.+|.+.-.+.
T Consensus       119 ~VliVEDViT----TG~S~~~ai~~l~~~  143 (211)
T 2aee_A          119 KMVIIEDLIS----TGGSVLDAAAAASRE  143 (211)
T ss_dssp             EEEEEEEEES----SCHHHHHHHHHHHHT
T ss_pred             EEEEEEEEEC----CCCCHHHHHHHHHHC
T ss_conf             8999853045----672157654468874


No 119
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=23.87  E-value=30  Score=13.55  Aligned_cols=95  Identities=13%  Similarity=0.093  Sum_probs=53.0

Q ss_pred             HHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCC
Q ss_conf             68999988995179465348816519855323715553553308898999999977998414999948888997317653
Q gi|254780664|r   49 TCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDD  128 (536)
Q Consensus        49 Ta~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~  128 (536)
                      -++.|...|++|+-|..   -||.+..--.-..+.++|       +..|...|++.+|...|.|++-+=.          
T Consensus        21 la~~L~~~g~~vvviD~---d~~~~~~~~~~g~~~v~g-------D~td~~~L~~a~i~~a~~vii~~~~----------   80 (144)
T 2hmt_A           21 IVKELHRMGHEVLAVDI---NEEKVNAYASYATHAVIA-------NATEENELLSLGIRNFEYVIVAIGA----------   80 (144)
T ss_dssp             HHHHHHHTTCCCEEEES---CHHHHHTTTTTCSEEEEC-------CTTCHHHHHTTTGGGCSEEEECCCS----------
T ss_pred             HHHHHHHCCCEEEEEEC---CHHHHHHHHHCCCEEEEE-------CCCCHHHHHHCCCCCCCEEEEEECC----------
T ss_conf             99999988991999979---679999998539749993-------1788888863022349999998188----------


Q ss_pred             HHHHHHCCCCCCHHHHHHHHCCCC--CCEEEECHHHHHHHHHHHH
Q ss_conf             112320023343469998740156--3135308999898898753
Q gi|254780664|r  129 YYTMVENIDIGGPSMIRAAAKNHD--YVTILTNPQDYPLFLAEMD  171 (536)
Q Consensus       129 ~~~~IEnIDIGGpsmiRAAAKN~~--~V~Vi~dp~dY~~~~~el~  171 (536)
                              |.....++..++|-+.  ++.+.++-.++...+.++-
T Consensus        81 --------d~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~G  117 (144)
T 2hmt_A           81 --------NIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIG  117 (144)
T ss_dssp             --------CHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHT
T ss_pred             --------CHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCC
T ss_conf             --------6899999999998779985999994688899999779


No 120
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=23.32  E-value=31  Score=13.48  Aligned_cols=101  Identities=12%  Similarity=0.086  Sum_probs=54.6

Q ss_pred             EEEEEEEEC---CCCHHHHHHHHHHCCCE--EEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHH--
Q ss_conf             698998754---56869999999987999--99942768999988995179465348816519855323715553553--
Q gi|254780664|r   17 KTALISVHN---KTGVVEFASRLLSRGIK--IISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGIL--   89 (536)
Q Consensus        17 krALiSV~d---Ktgl~~la~~L~~~g~~--iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL--   89 (536)
                      .-+++|.--   =.....+|+.|.+.|.+  +++++.-...+++.|+.+..+......++...   ..........+.  
T Consensus         9 hi~~~~~p~~GH~~p~l~la~~L~~~GH~V~~~t~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~   85 (430)
T 2iyf_A            9 HIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAATGPRPVLYHSTLPGPDADP---EAWGSTLLDNVEPF   85 (430)
T ss_dssp             EEEEECCSCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHTTSCEEEECCCCSCCTTSCG---GGGCSSHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCEEEEECCCCCCCCCCH---HHHHHHHHHHHHHH
T ss_conf             899967874507999999999999788989999782167778866987887167787432351---34566789999999


Q ss_pred             HCCCCHHHHHHHHHCCCCCEEEEEEECCCHH
Q ss_conf             3088989999999779984149999488889
Q gi|254780664|r   90 SIRDNPAHMKFMQDHELESIDLVVVNLYPFE  120 (536)
Q Consensus        90 ~~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~  120 (536)
                      .+.-......-.+.+.-...|+|++..+.+.
T Consensus        86 ~~~~~~~l~~l~~~~~~~~pD~vi~~~~~~~  116 (430)
T 2iyf_A           86 LNDAIQALPQLADAYADDIPDLVLHDITSYP  116 (430)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCSEEEEETTCHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEECCCCHH
T ss_conf             9999999999999986049839997573026


No 121
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative; 2.09A {Plasmodium falciparum 3D7}
Probab=22.80  E-value=26  Score=14.02  Aligned_cols=27  Identities=26%  Similarity=0.266  Sum_probs=12.4

Q ss_pred             CCEEEEEH-HHHHHHHHCCCCEEEHHHH
Q ss_conf             99999942-7689999889951794653
Q gi|254780664|r   40 GIKIISTG-GTCQLLEEEGIPVTSVFDI   66 (536)
Q Consensus        40 g~~iisTg-GTa~~l~~~gi~v~~Vs~~   66 (536)
                      ++..++|+ -|+..+++.|||+.+.+++
T Consensus        57 ~i~~V~tS~~T~~~a~~~Gi~v~~l~~~   84 (244)
T 2f8m_A           57 DVVCIPTSIDTELKARKLGIPLTTLEKH   84 (244)
T ss_dssp             SCEEEESSHHHHHHHHHHTCCBCCCCSS
T ss_pred             CEEEECCCHHHHHHHHHCCCCCCCCHHC
T ss_conf             5499748589999998859971170235


No 122
>1q1g_A Uridine phosphorylase putative; transition state complex, transferase; HET: MTI; 2.02A {Plasmodium falciparum 3D7} SCOP: c.56.2.1 PDB: 1nw4_A* 3fow_A*
Probab=22.70  E-value=31  Score=13.39  Aligned_cols=50  Identities=6%  Similarity=0.032  Sum_probs=24.2

Q ss_pred             HHHHHHHHHCCCCCEEEEEECCEEEEE----CCCCC--CHHHHHHHHHHHHHHHHH
Q ss_conf             999999860056677999968938997----29688--889999999999876420
Q gi|254780664|r  418 MKFAFKVVKHVKSNAVVYAKDGRTVGI----GSGQT--SRVDSTRFAAIKAHNISA  467 (536)
Q Consensus       418 L~FA~kv~K~vkSNAIv~ak~~~tiGi----GaGQ~--sRVda~~iA~~KA~~~~~  467 (536)
                      .+|+.-....++.=+|..+-+...-|-    ...|+  +--...++|++-+.....
T Consensus       189 al~~va~~~gv~a~ail~Vsd~~~~~~~~~~~~~~~~~~~~~mi~iALea~~~L~~  244 (276)
T 1q1g_A          189 TLMVIGTLRKVKTGGILIVDGCPFKWDEGDFDNNLVPHQLENMIKIALGACAKLAT  244 (276)
T ss_dssp             HHHHHHHHHTCEEEEEEEECBCGGGGGGTCBCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999998598099999996876776656763256688999999999999999999


No 123
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=22.55  E-value=32  Score=13.37  Aligned_cols=33  Identities=18%  Similarity=0.146  Sum_probs=20.5

Q ss_pred             HHHHHHHEECCCCHHHHHHHH------CCCCCEEEECCC
Q ss_conf             654311112687989998851------245531563167
Q gi|254780664|r  338 KVFTEAIIAPTLSEEAADVLA------KKPSMRFLKTSS  370 (536)
Q Consensus       338 ~~F~EvIiAP~f~~eAleiL~------~KKnlRil~~~~  370 (536)
                      +-|++|++||+|.+.+..++.      -|||.-+|-.+.
T Consensus        81 kaF~~vv~a~~~~~G~~~liq~~GlG~l~PNtvllg~~~  119 (294)
T 3g40_A           81 FSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPE  119 (294)
T ss_dssp             EEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCS
T ss_pred             EEEEEEEECCCHHHHHHHHHHHCCCCCCCCCEEEECCCC
T ss_conf             178999967998999999999739878888878967998


No 124
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=22.05  E-value=32  Score=13.30  Aligned_cols=18  Identities=6%  Similarity=0.196  Sum_probs=10.7

Q ss_pred             HHHHHHCCCCCEEEECCC
Q ss_conf             998851245531563167
Q gi|254780664|r  353 AADVLAKKPSMRFLKTSS  370 (536)
Q Consensus       353 AleiL~~KKnlRil~~~~  370 (536)
                      ..+.|.+.++..+|-+..
T Consensus         9 l~~~l~~~~~~~liDvR~   26 (103)
T 3eme_A            9 LKNKLLESKPVQIVDVRT   26 (103)
T ss_dssp             HHHGGGSSSCCEEEECSC
T ss_pred             HHHHHHCCCCEEEEECCC
T ss_conf             999986799819998988


No 125
>1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine metabolism, catalytic loop; HET: 9DA; 1.85A {Giardia intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A*
Probab=21.48  E-value=18  Score=15.20  Aligned_cols=15  Identities=7%  Similarity=-0.144  Sum_probs=5.6

Q ss_pred             CCCCHHHHHHHCCCC
Q ss_conf             685558999971995
Q gi|254780664|r  487 PFPDGIVEAIKAGVT  501 (536)
Q Consensus       487 PF~D~ie~aa~~Gi~  501 (536)
                      ++-.|-+.+.+.|++
T Consensus       159 ~~~~Gre~l~~~~i~  173 (186)
T 1l1q_A          159 EALKGREKVGQKCTR  173 (186)
T ss_dssp             GGGCHHHHHTTTCCC
T ss_pred             CCCCHHHHHHCCCCC
T ss_conf             778858885068973


No 126
>1rrv_A Glycosyltransferase GTFD; GT-B, rossmann fold; HET: DVV TYD; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=21.23  E-value=33  Score=13.19  Aligned_cols=47  Identities=30%  Similarity=0.411  Sum_probs=36.9

Q ss_pred             EEEEEEECCCC----HHHHHHHHHHCCCE--EEEEHHHHHHHHHCCCCEEEHH
Q ss_conf             98998754568----69999999987999--9994276899998899517946
Q gi|254780664|r   18 TALISVHNKTG----VVEFASRLLSRGIK--IISTGGTCQLLEEEGIPVTSVF   64 (536)
Q Consensus        18 rALiSV~dKtg----l~~la~~L~~~g~~--iisTgGTa~~l~~~gi~v~~Vs   64 (536)
                      |-||+..--.|    +..+|+.|.+.|.+  ++++++....+++.|+++..+.
T Consensus         2 rIl~~~~gt~Ghv~P~l~lA~~L~~rGh~V~~~t~~~~~~~v~~~g~~~~~i~   54 (416)
T 1rrv_A            2 RVLLSVCGTRGDVEIGVALADRLKALGVQTRMCAPPAAEERLAEVGVPHVPVG   54 (416)
T ss_dssp             EEEEEEESCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEECS
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHCCCEEEECC
T ss_conf             49998798667899999999999987998999958567778987798699868


No 127
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protein structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=20.98  E-value=24  Score=14.25  Aligned_cols=14  Identities=21%  Similarity=0.321  Sum_probs=9.6

Q ss_pred             HHHHHHHHCCCCEE
Q ss_conf             76899998899517
Q gi|254780664|r   48 GTCQLLEEEGIPVT   61 (536)
Q Consensus        48 GTa~~l~~~gi~v~   61 (536)
                      .|.++|+++|+++.
T Consensus        35 ~t~~lL~~aGl~~~   48 (304)
T 1nh8_A           35 PATEILAEAGYRRR   48 (304)
T ss_dssp             HHHHHHHHTTCCCC
T ss_pred             HHHHHHHHCCCCCC
T ss_conf             99999998799755


No 128
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=20.62  E-value=34  Score=13.10  Aligned_cols=10  Identities=20%  Similarity=0.471  Sum_probs=4.3

Q ss_pred             HHHHHHCCCC
Q ss_conf             9999977998
Q gi|254780664|r   98 MKFMQDHELE  107 (536)
Q Consensus        98 ~~~l~~~~i~  107 (536)
                      .+.++++|+.
T Consensus        54 ~~~l~~~gl~   63 (269)
T 3ngf_A           54 ARELKQHNLT   63 (269)
T ss_dssp             HHHHHHTTCE
T ss_pred             HHHHHHCCCC
T ss_conf             9999983996


No 129
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix K1}
Probab=20.26  E-value=35  Score=13.05  Aligned_cols=16  Identities=19%  Similarity=0.268  Sum_probs=7.1

Q ss_pred             HHHHHHCCCCCCEEEE
Q ss_conf             9998740156313530
Q gi|254780664|r  143 MIRAAAKNHDYVTILT  158 (536)
Q Consensus       143 miRAAAKN~~~V~Vi~  158 (536)
                      +..+++|.-+.+.+++
T Consensus        88 v~e~~~~Gvk~~viit  103 (297)
T 2yv2_A           88 VYEAVDAGIRLVVVIT  103 (297)
T ss_dssp             HHHHHHTTCSEEEECC
T ss_pred             HHHHHHCCCCEEEEEC
T ss_conf             9999877998899967


No 130
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Vibrio parahaemolyticus AQ3810}
Probab=20.20  E-value=35  Score=13.04  Aligned_cols=80  Identities=14%  Similarity=0.021  Sum_probs=44.7

Q ss_pred             EEEEEEEEECCCCH-HHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             36989987545686-99999999879999994276899998899517946534881651985532371555355330889
Q gi|254780664|r   16 VKTALISVHNKTGV-VEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDN   94 (536)
Q Consensus        16 ikrALiSV~dKtgl-~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~~   94 (536)
                      ||.+||.=.-+ || ..+|+.|.+.|+.++-++-....|++.      .++       +..++..+        -.+-.+
T Consensus         1 MkiVlITGass-GIG~a~A~~la~~G~~V~l~~R~~~~l~~~------~~~-------~~~~~~~~--------~~Dv~~   58 (230)
T 3guy_A            1 MSLIVITGASS-GLGAELAKLYDAEGKATYLTGRSESKLSTV------TNC-------LSNNVGYR--------ARDLAS   58 (230)
T ss_dssp             --CEEEESTTS-HHHHHHHHHHHHTTCCEEEEESCHHHHHHH------HHT-------CSSCCCEE--------ECCTTC
T ss_pred             CCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHH------HHH-------HCCCCCEE--------EEECCC
T ss_conf             99999918771-999999999998799899998999999999------998-------54346889--------700699


Q ss_pred             HHHHHHHHHCCCCCEEEEEEECC
Q ss_conf             89999999779984149999488
Q gi|254780664|r   95 PAHMKFMQDHELESIDLVVVNLY  117 (536)
Q Consensus        95 ~~~~~~l~~~~i~~IDlVvvNLY  117 (536)
                      +++..++-+.-...+|++|.|--
T Consensus        59 ~~~v~~~~~~~~~~~d~linnaG   81 (230)
T 3guy_A           59 HQEVEQLFEQLDSIPSTVVHSAG   81 (230)
T ss_dssp             HHHHHHHHHSCSSCCSEEEECCC
T ss_pred             HHHHHHHHHHHCCCCCEEEECCC
T ss_conf             99999999985883879998687


No 131
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=20.12  E-value=35  Score=13.03  Aligned_cols=76  Identities=14%  Similarity=0.225  Sum_probs=40.6

Q ss_pred             EEEEEEEECCCCH-HHHHHHHHHCCCEEEEEHHHH-------HHHHHCCCCEEEHH-HHCCCCHHCCCCCCCCCCHHHHH
Q ss_conf             6989987545686-999999998799999942768-------99998899517946-53488165198553237155535
Q gi|254780664|r   17 KTALISVHNKTGV-VEFASRLLSRGIKIISTGGTC-------QLLEEEGIPVTSVF-DITKFPEIMGGRVKTLHPKIYGG   87 (536)
Q Consensus        17 krALiSV~dKtgl-~~la~~L~~~g~~iisTgGTa-------~~l~~~gi~v~~Vs-~~TgfpEil~GRVKTLHP~I~gg   87 (536)
                      |++||.=.- +|| ..+|+.|.+.|+.++-++-+.       +.|++.|-.+.-+. |+|...++               
T Consensus         8 k~vlITGas-~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~i~~~g~~~~~~~~Dvs~~~~v---------------   71 (252)
T 3h7a_A            8 ATVAVIGAG-DYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEV---------------   71 (252)
T ss_dssp             CEEEEECCS-SHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHH---------------
T ss_pred             CEEEEECCC-HHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHH---------------
T ss_conf             989997585-5899999999998799999998999999999999996398399997776899999---------------


Q ss_pred             HHHCCCCHHHHHHHHHCCCCCEEEEEEECC
Q ss_conf             533088989999999779984149999488
Q gi|254780664|r   88 ILSIRDNPAHMKFMQDHELESIDLVVVNLY  117 (536)
Q Consensus        88 IL~~r~~~~~~~~l~~~~i~~IDlVvvNLY  117 (536)
                             +.-.+.++++  .++|.+|+|-.
T Consensus        72 -------~~~~~~i~~~--~~~d~lv~nag   92 (252)
T 3h7a_A           72 -------TAFLNAADAH--APLEVTIFNVG   92 (252)
T ss_dssp             -------HHHHHHHHHH--SCEEEEEECCC
T ss_pred             -------HHHHHHHHHC--CCEEEEECCCE
T ss_conf             -------9888777642--75012301432


No 132
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=20.11  E-value=35  Score=13.03  Aligned_cols=36  Identities=19%  Similarity=0.359  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHCCCEEEEEHHH-------HHHHHHCCCCEEEHH
Q ss_conf             699999999879999994276-------899998899517946
Q gi|254780664|r   29 VVEFASRLLSRGIKIISTGGT-------CQLLEEEGIPVTSVF   64 (536)
Q Consensus        29 l~~la~~L~~~g~~iisTgGT-------a~~l~~~gi~v~~Vs   64 (536)
                      -.+|++.|.+.|+.++..||.       ++-.+++|-.|+-|.
T Consensus        22 a~~lg~~La~~g~~lV~GGG~~GlM~ava~ga~~~gg~v~Gi~   64 (191)
T 1t35_A           22 AAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMENGGTAIGVM   64 (191)
T ss_dssp             HHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHTTTCCEEEEE
T ss_pred             HHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             9999999998799699899858899999989997599343206


No 133
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=20.10  E-value=35  Score=13.03  Aligned_cols=34  Identities=18%  Similarity=0.265  Sum_probs=16.0

Q ss_pred             HHHHHHHH-HCCCEEEE-E--HHH----HHHHHHCCCCEEEH
Q ss_conf             99999999-87999999-4--276----89999889951794
Q gi|254780664|r   30 VEFASRLL-SRGIKIIS-T--GGT----CQLLEEEGIPVTSV   63 (536)
Q Consensus        30 ~~la~~L~-~~g~~iis-T--gGT----a~~l~~~gi~v~~V   63 (536)
                      ...++.|. +.++..+- .  .++    +..++++++|+.-.
T Consensus        62 ~~~a~~Lv~~~~V~~viG~~~S~~~~a~~~~~~~~~vp~i~~  103 (379)
T 3n0w_A           62 LSIAREWFDRDGVDAIFDVVNSGTALAINNLVKDKKKLAFIT  103 (379)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCHHHHHHHHHHHHHHTCEEEEC
T ss_pred             HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEC
T ss_conf             999999997479869996142198999999998724772330


Done!