RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780664|ref|YP_003065077.1| bifunctional
phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP
cyclohydrolase [Candidatus Liberibacter asiaticus str. psy62]
         (536 letters)



>gnl|CDD|30487 COG0138, PurH, AICAR transformylase/IMP cyclohydrolase PurH (only
           IMP cyclohydrolase domain in Aful) [Nucleotide transport
           and metabolism].
          Length = 515

 Score =  714 bits (1845), Expect = 0.0
 Identities = 301/523 (57%), Positives = 377/523 (72%), Gaps = 11/523 (2%)

Query: 16  VKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGG 75
           +K AL+SV +KTG+VEFA  L+  G++I+STGGT +LL E GIPVT V DIT FPE++ G
Sbjct: 2   IKRALLSVSDKTGIVEFAKALVELGVEILSTGGTAKLLAEAGIPVTEVSDITGFPEMLDG 61

Query: 76  RVKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCRED-DYYTMVE 134
           RVKTLHPKI+GGIL+ RD   HM  +++H +E IDLVVVNLYPFEE+  +        VE
Sbjct: 62  RVKTLHPKIHGGILARRDKDEHMAALEEHGIEPIDLVVVNLYPFEETVAKPGVTLEEAVE 121

Query: 135 NIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVNNGKIPYNFRKKMARQAFSRTA 194
           NIDIGGP+M+RAAAKNH  VT++ +P DY   L E+   NG++    RK++A +AF  TA
Sbjct: 122 NIDIGGPTMLRAAAKNHKDVTVVVDPADYAAVLEELK-ANGELSLATRKRLAAKAFEHTA 180

Query: 195 SYDTAICRWLANAESENFPDYLNITAVKKQEMRYGENPHQKAALYSTPEKKSGIAHAVLV 254
           +YD AI  + +      FP+ LN++  KKQ++RYGENPHQ AA Y     K G+A A  +
Sbjct: 181 AYDAAIANYFSELLGGEFPEQLNLSFTKKQDLRYGENPHQSAAFYRDGNAKGGVATAKQL 240

Query: 255 QGKPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDP 314
           QGK LSYNNI D DAA+ELV EF  +   AC IVKH NPCGVA  DT+ EAY+RA   DP
Sbjct: 241 QGKELSYNNIADADAAWELVKEF-DEPGPACAIVKHANPCGVAVGDTIAEAYKRAYEADP 299

Query: 315 ISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDF 374
            SAFGGIIA NREVD E A+ + K+F E IIAP+ +EEA ++LAKK ++R L     L  
Sbjct: 300 TSAFGGIIALNREVDVETAEAISKIFLEVIIAPSYTEEALEILAKKKNLRVLTIGP-LGP 358

Query: 375 HGEEIVLKTVSGGILVQTRDN-VVDNKELTVVTKRSPTDQELRDMKFAFKVVKHVKSNAV 433
               +  K VSGG+LVQ RD+ ++D  EL VVTKR PT+QEL D+ FA+KVVKHVKSNA+
Sbjct: 359 RAAGLEFKRVSGGLLVQERDDGMIDEAELKVVTKRQPTEQELEDLLFAWKVVKHVKSNAI 418

Query: 434 VYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQADVKSMTNGSVIASEAFYPFPDGIV 493
           VYAKDG+TVGIG+GQ SRVDS R AA KA +   +A      +G+V+AS+AF+PFPDGI 
Sbjct: 419 VYAKDGQTVGIGAGQMSRVDSARIAAEKAGDAGLRA------HGAVLASDAFFPFPDGID 472

Query: 494 EAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFTGIRHFRH 536
            A KAG+ A+IQPGGS+RD E I  AD+HGIAMVFTG+RHFRH
Sbjct: 473 AAAKAGIKAIIQPGGSIRDQEVIAAADEHGIAMVFTGVRHFRH 515


>gnl|CDD|145132 pfam01808, AICARFT_IMPCHas, AICARFT/IMPCHase bienzyme.  This is a
           family of bifunctional enzymes catalysing the last two
           steps in de novo purine biosynthesis. The bifunctional
           enzyme is found in both prokaryotes and eukaryotes. The
           second last step is catalysed by
           5-aminoimidazole-4-carboxamide ribonucleotide
           formyltransferase EC:2.1.2.3 (AICARFT), this enzyme
           catalyses the formylation of AICAR with
           10-formyl-tetrahydrofolate to yield FAICAR and
           tetrahydrofolate. The last step is catalysed by IMP
           (Inosine monophosphate) cyclohydrolase EC:3.5.4.10
           (IMPCHase), cyclizing FAICAR
           (5-formylaminoimidazole-4-carboxamide ribonucleotide) to
           IMP.
          Length = 315

 Score =  368 bits (946), Expect = e-102
 Identities = 162/319 (50%), Positives = 207/319 (64%), Gaps = 7/319 (2%)

Query: 147 AAKNHDYVTILTNPQDYPLFLAEMDVNNGKIPYNFRKKMARQAFSRTASYDTAICRWLAN 206
           AAKNH  VTI+ +P DY   LAE+    G +    R+++A +AF  TA+YD AI  +   
Sbjct: 1   AAKNHKRVTIVVDPADYSAVLAELK-KEGSLTLQTRRRLALKAFEHTAAYDAAIADYFRK 59

Query: 207 AESENFP-DYLNITAVKKQEMRYGENPHQKAALYSTPE-KKSGIAHAVLVQGKPLSYNNI 264
             S   P     +  V+KQ +RYGENPHQ+AA Y  P  K+  IA A  + GK +SYNN+
Sbjct: 60  QYSPKHPERTFTLPGVRKQSLRYGENPHQQAAFYVDPTQKEGSIAPAEQLHGKEMSYNNL 119

Query: 265 NDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAF 324
            D DAA+ LV EF +Q   A  IVKH NPCGVA   ++ EAY RA   DP+SAFGGIIA 
Sbjct: 120 LDADAAWRLVKEFENQ--PAAAIVKHANPCGVAVGPSIAEAYARAREADPMSAFGGIIAL 177

Query: 325 NREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDFHGEEIVLKTV 384
           N EVD E AKE+ + F+E IIAP    EA +VL++K ++R L        +  E+ L+ V
Sbjct: 178 NDEVDVETAKEISEEFSEVIIAPGYEPEALEVLSRKKNLRVL-VLQEDPAYVPELELRQV 236

Query: 385 SGGILVQTRDNVVDNK-ELTVVTKRSPTDQELRDMKFAFKVVKHVKSNAVVYAKDGRTVG 443
           SGG+L+Q RD+   +  E +VVTKR PT+QEL D+ FA+KVVKHVKSNA+VYAK+G TVG
Sbjct: 237 SGGLLIQDRDDGGVDDSEFSVVTKRKPTEQELEDLLFAWKVVKHVKSNAIVYAKNGMTVG 296

Query: 444 IGSGQTSRVDSTRFAAIKA 462
           IG+GQ SRV S R A  KA
Sbjct: 297 IGAGQQSRVHSARLAGDKA 315


>gnl|CDD|37766 KOG2555, KOG2555, KOG2555, AICAR transformylase/IMP
           cyclohydrolase/methylglyoxal synthase [Nucleotide
           transport and metabolism].
          Length = 588

 Score =  361 bits (928), Expect = e-100
 Identities = 168/472 (35%), Positives = 259/472 (54%), Gaps = 40/472 (8%)

Query: 17  KTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGR 76
           K AL+SV +KTG+++ A  L+  G+ ++++GGT ++L + G+PV  V +IT FPE++GGR
Sbjct: 5   KLALLSVSDKTGLLDLAKGLVELGVTLVASGGTAKMLRDAGLPVRDVSEITHFPEMLGGR 64

Query: 77  VKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCRED-DYYTMVEN 135
           VKTLHP ++GGIL+ RD  +  K +++  ++ +D+VV NLYPF+E+  +        VEN
Sbjct: 65  VKTLHPAVHGGILA-RDIESDEKDLKEQGIDKVDVVVCNLYPFKETVAKPGVTVEEAVEN 123

Query: 136 IDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVNNGKIPYNFRKKMARQAFSRTAS 195
           IDIGG +++RAAAKNH  VTI+ +P DY   L+E+   + +I  + R + A +AF  TAS
Sbjct: 124 IDIGGVTLLRAAAKNHARVTIVCDPADYDAVLSEL--KSSEISQDLRNRRALKAFEHTAS 181

Query: 196 YDTAICRWLANAESENFPDYLNITAVKKQEMRYGENPHQKAALYSTPEKKSGIAHAVLVQ 255
           YD AI  +     SE          V +  +RYG NPHQK A       +  +   VL  
Sbjct: 182 YDAAISDYFRKQYSE---------GVSQLSLRYGMNPHQKPA--QLYVVQGKLPFKVL-C 229

Query: 256 GKPLSYNNINDLDAAFELVSEFR-SQDCAACVIVKHMNPCGVATADTLVE---------- 304
           G P  Y N+ D   ++ LV E   +    A    KH++P G A    L +          
Sbjct: 230 GSP-GYINLLDALNSWPLVKELSENLGLPAAASFKHVSPAGAAVGLPLSDVEAKVYFVDD 288

Query: 305 ---------AYRRALSCDPISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAAD 355
                    AY RA   D +S+FG  +A +  VD   A+ + +  ++ +IAP    EA +
Sbjct: 289 IYELTPLACAYARARGADRMSSFGDFVALSDVVDVVTARIISREVSDGVIAPGYEPEALE 348

Query: 356 VLAKKPSMRFLKTSSLLDFHGEEIVLKTVSGGILVQTRDNVVDNKEL--TVVTKRSP-TD 412
           +L+KK + ++       ++   E+  + V G  L Q R++ V ++ L   VV+K     +
Sbjct: 349 ILSKKKNGKYCILQMDPNYVPGEVERRQVFGLTLQQKRNDAVIDQSLFSNVVSKNKDLPE 408

Query: 413 QELRDMKFAFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKAHN 464
             L D+  A   +K+ +SN+V YAK+G  VG+G+GQ SR+  TR A  KA N
Sbjct: 409 SALIDLIVATIALKYTQSNSVCYAKNGMVVGLGAGQQSRIHCTRLAGDKADN 460


>gnl|CDD|29633 cd01421, IMPCH, Inosine monophosphate cyclohydrolase domain. This
           is the N-terminal domain in the purine biosynthesis
           pathway protein ATIC (purH). The bifunctional ATIC
           protein contains a C-terminal  ATIC formylase domain
           that formylates
           5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH
           domain then converts the
           formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to
           inosine monophosphate. This is the final step in de novo
           purine production..
          Length = 187

 Score =  253 bits (647), Expect = 1e-67
 Identities = 107/189 (56%), Positives = 139/189 (73%), Gaps = 3/189 (1%)

Query: 17  KTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGR 76
           K ALISV +KTG+VEFA  L+  G++I+STGGT + L+E GIPVT V DIT FPEI+GGR
Sbjct: 1   KRALISVSDKTGLVEFAKELVELGVEILSTGGTAKFLKEAGIPVTDVSDITGFPEILGGR 60

Query: 77  VKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCRED-DYYTMVEN 135
           VKTLHPKI+GGIL+ RDN  H   +++H +E IDLVVVNLYPFEE+  + +      +EN
Sbjct: 61  VKTLHPKIHGGILARRDNEEHKD-LEEHGIEPIDLVVVNLYPFEETVAKGNVTLEEAIEN 119

Query: 136 IDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVNNGKIPYNFRKKMARQAFSRTAS 195
           IDIGGPS++RAAAKN+  VT+L +P DY   L E+  +NG I    R+++A +AF+ TA 
Sbjct: 120 IDIGGPSLLRAAAKNYKDVTVLVDPADYQKVLEELK-SNGSISEETRRRLALKAFAHTAE 178

Query: 196 YDTAICRWL 204
           YD AI  +L
Sbjct: 179 YDAAISNYL 187


>gnl|CDD|145348 pfam02142, MGS, MGS-like domain.  This domain composes the whole
           protein of methylglyoxal synthetase and the domain is
           also found in Carbamoyl phosphate synthetase (CPS) where
           it forms a regulatory domain that binds to the
           allosteric effector ornithine. This family also includes
           inosicase. The known structures in this family show a
           common phosphate binding site.
          Length = 92

 Score = 82.1 bits (204), Expect = 4e-16
 Identities = 40/117 (34%), Positives = 55/117 (47%), Gaps = 27/117 (23%)

Query: 28  GVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGG 87
           G+VE A  L+  G K+ +TGGT + L+E GIP T V + T      GGRV+         
Sbjct: 1   GLVELAKALVELGFKLYATGGTAKFLKEAGIP-TEVVNKTGEG-RPGGRVQ--------- 49

Query: 88  ILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYT--MVENIDIGGPS 142
                        +++ E   IDLV+  LYPF+ +    D Y      ENIDI  P+
Sbjct: 50  ---------IGDLIKNGE---IDLVINTLYPFKAT--VHDGYAIRRAAENIDIPLPT 92


>gnl|CDD|29632 cd00532, MGS-like, MGS-like domain. This domain composes the whole
           protein of methylglyoxal synthetase, which catalyzes the
           enolization of dihydroxyacetone phosphate (DHAP) to
           produce methylglyoxal. The family also includes the
           C-terminal domain in carbamoyl phosphate synthetase
           (CPS) where it catalyzes the last phosphorylation of a
           coaboxyphosphate intermediate to form the product
           carbamoyl phosphate and may also play a regulatory role.
           This family also includes inosine monophosphate
           cyclohydrolase. The known structures in this family show
           a common phosphate binding site..
          Length = 112

 Score = 52.7 bits (126), Expect = 3e-07
 Identities = 29/147 (19%), Positives = 50/147 (34%), Gaps = 41/147 (27%)

Query: 19  ALISVHN--KTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGR 76
             +SV +  K  +V+ A +L S G  + +TGGT ++L + GIPV +V    +        
Sbjct: 2   VFLSVSDHVKAMLVDLAPKLSSDGFPLFATGGTSRVLADAGIPVRAVSKRHED------- 54

Query: 77  VKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENI 136
                P +   I                E    D+V+    P  +               
Sbjct: 55  ---GEPTVDAAIA---------------EKGKFDVVINLRDPRRD------------RCT 84

Query: 137 DIGGPSMIRAAAKNHDYVTILTNPQDY 163
           D  G +++R A      + + T     
Sbjct: 85  DEDGTALLRLARLYK--IPVTTPNATA 109


>gnl|CDD|29636 cd01424, MGS_CPS_II, Methylglyoxal synthase-like domain from type
          II glutamine-dependent carbamoyl phosphate synthetase
          (CSP). CSP, a CarA and CarB heterodimer, catalyzes the
          production of carbamoyl phosphate which is subsequently
          employed in the metabolic pathways responsible for the
          synthesis of pyrimidine nucleotides or arginine. The
          MGS-like domain is the C-terminal domain of CarB and
          appears to play a regulatory role in CPS function by
          binding allosteric effector molecules, including UMP
          and ornithine..
          Length = 110

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 18 TALISVHN--KTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDI 66
          T  ISV +  K   VE A RL   G K+++T GT + L+E GIPV  V  +
Sbjct: 2  TVFISVADRDKPEAVEIAKRLAELGFKLVATEGTAKYLQEAGIPVEVVNKV 52


>gnl|CDD|29635 cd01423, MGS_CPS_I_III, Methylglyoxal synthase-like domain found
          in pyr1 and URA1-like carbamoyl phosphate synthetases
          (CPS), including ammonia-dependent CPS Type I, and
          glutamine-dependent CPS Type III. These are multidomain
          proteins, in which MGS is the C-terminal domain..
          Length = 116

 Score = 35.2 bits (81), Expect = 0.044
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 17 KTALIS--VHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPE 71
          K  LIS   ++K  ++  A +L   G K+ +T GT   L E GIPVT V   ++ P+
Sbjct: 1  KGILISIGSYSKPELLPTAQKLSKLGYKLYATEGTADFLLENGIPVTPVAWPSEEPQ 57


>gnl|CDD|33297 COG3494, COG3494, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 279

 Score = 32.9 bits (75), Expect = 0.23
 Identities = 43/239 (17%), Positives = 86/239 (35%), Gaps = 35/239 (14%)

Query: 321 IIAFNREVDQEVAK---EVIKVFTEAIIAPTLSEEAADVL------AKKPSMRFLKTSSL 371
           II    E D E+ +   + + +     +   L  E  D +       ++P+ R L+   +
Sbjct: 33  IIGLRGEADPELKEFEYKEVSIGEVGKLIKLLKTEGVDRVVLAGGVERRPNFRDLRPDKI 92

Query: 372 LDF----------HGEEIVLKTVSG-----GILVQTRDNVVDNKELT--VVTKRSPTDQE 414
                         G++ +LK V       G  V     +V         +TK+ P +++
Sbjct: 93  GLAVLPKIVEALIRGDDALLKAVIDFIESRGFKVIGAHEIVPGLLAETGPLTKKEPDNED 152

Query: 415 LRDMKFAFKVVKHVKSNAV---VYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQAD- 470
           LRD++   +    + +  V        GR V +   + +     R A ++    + +   
Sbjct: 153 LRDIELGIEAANALGALDVGQGAVVVGGRVVAVEGAEGTDAMLRRVADLRKAGRAERRGG 212

Query: 471 --VKSMTNGSVIASEAFYPFPDGIVEAIKAGVTA-VIQPGGS--VRDSEAITVADQHGI 524
             VK         ++     P+ I  A KAG+    I+ G    +     + +A++ GI
Sbjct: 213 VLVKMAKPQQDERADLPTIGPNTIENAAKAGLAGIAIEAGRVLILEREATLKLANKLGI 271


>gnl|CDD|31645 COG1456, CdhE, CO dehydrogenase/acetyl-CoA synthase gamma subunit
           (corrinoid Fe-S protein) [Energy production and
           conversion].
          Length = 467

 Score = 29.5 bits (66), Expect = 2.4
 Identities = 35/157 (22%), Positives = 48/157 (30%), Gaps = 7/157 (4%)

Query: 207 AESENFPDYLNITAVKKQEMRYGENPHQKAALYSTPEKKSGIAHAVLVQGK-PLSYNNIN 265
                 P  L     +  +        QK  LY+  E        + V+ K PL  +  N
Sbjct: 155 VAEAGLPVILCSFDPEVMKAALEVVKDQKPLLYAATEDNWKEFAKLAVEYKVPLVLSAFN 214

Query: 266 DLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTL--VEAYRRALSCDPISAFG---G 320
           DLD    L   +        V+     P G    DT       RRA        F     
Sbjct: 215 DLDDLKNLAVTYAQAGIKDIVLDPGTYPGGEGLKDTFDNFVMIRRAAIEGFDKDFAYPIM 274

Query: 321 IIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVL 357
            + F   +       V   + EA+IA T     AD+L
Sbjct: 275 ALPFTAWM-FGEDDPVSASYWEAVIASTFMNRYADIL 310


>gnl|CDD|31217 COG1013, PorB, Pyruvate:ferredoxin oxidoreductase and related
           2-oxoacid:ferredoxin oxidoreductases, beta subunit
           [Energy production and conversion].
          Length = 294

 Score = 28.8 bits (64), Expect = 4.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 137 DIGGPSMIRAAAKNHDYVTILTNPQDY 163
           DIGG  +I A  +NHD   I+ + + Y
Sbjct: 102 DIGGNHLIHALRRNHDITYIVVDNEVY 128


>gnl|CDD|39329 KOG4126, KOG4126, KOG4126, Alkaline phosphatase [Inorganic ion
           transport and metabolism].
          Length = 529

 Score = 28.4 bits (63), Expect = 4.6
 Identities = 47/199 (23%), Positives = 69/199 (34%), Gaps = 40/199 (20%)

Query: 31  EFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPK----IYG 86
           E  +     G + I+     QL+E+   PV    D+     I+GG  K   PK       
Sbjct: 212 EVPASAGGEGCQDIAR----QLIEQ---PVGKNLDV-----ILGGGRKYFLPKGTNDSDY 259

Query: 87  GILSIR-DNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDY-------YTMVENID- 137
           G+   R D    +   +  +L      V N          + DY         M  +ID 
Sbjct: 260 GVPGERLDGRNLLDEWRAKKLHVGGQYVWNRKELLNLNLSKTDYLLGLFANGHMSYHIDR 319

Query: 138 --IGGPS---MIRAAAKNHDYVTILTNPQDYPLFLAEMDVNNGKIPYNFRKKMARQAFSR 192
                PS   M   A +      +  N + + LF     V  G+I +   +  ARQA   
Sbjct: 320 DPTEQPSLSEMTEKALE-----VLSKNSKGFFLF-----VEGGRIDHGHHETDARQALDE 369

Query: 193 TASYDTAICRWLANAESEN 211
           T  +D AI R L     E+
Sbjct: 370 TLEFDKAIQRALELTSEED 388


>gnl|CDD|32370 COG2187, COG2187, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 337

 Score = 28.4 bits (63), Expect = 5.1
 Identities = 25/165 (15%), Positives = 49/165 (29%), Gaps = 16/165 (9%)

Query: 212 FPDYLNITAVKKQEMRYGENPHQKAALYSTPEKKSGIAHAVLVQGKPLSYNNINDLDAAF 271
           F D+   T  K++     E           P+    +     V    L   +   ++   
Sbjct: 50  FLDF--STLEKRRHACEEELELNSRL---APDLYLEVLPISRVADGWLIGGDGEAVEYVL 104

Query: 272 ELVSEFRSQDCAACVIVKHMNPCG---VATADTLVEAYRRALSCDPISAFGGIIAFNREV 328
           ++   F  Q+     +            A A  +   ++RA     I +FG + A    V
Sbjct: 105 KMR-RFP-QEGLLASMFTAGKLTESLLDALAKVVARFHQRAPRNPCIDSFGEVGAVAYRV 162

Query: 329 DQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLD 373
            +  A+      T   +    S++  D +         +   L D
Sbjct: 163 RENFAQ------TRKYLGIVQSKQQIDRIEHMTEEFLERHGPLFD 201


>gnl|CDD|73377 cd02929, TMADH_HD_FMN, Trimethylamine dehydrogenase (TMADH) and
           histamine dehydrogenase (HD) FMN-binding domain.  TMADH
           is an iron-sulfur flavoprotein that catalyzes the
           oxidative demethylation of trimethylamine to form
           dimethylamine and formaldehyde. The protein forms a
           symetrical dimer with each subunit containing one 4Fe-4S
           cluster and one FMN cofactor.  It contains a unique
           flavin, in the form of a 6-S-cysteinyl FMN  which is
           bent by ~25 degrees along the N5-N10 axis of the flavin
           isoalloxazine ring. This modification of the
           conformation of the flavin is thought to facilitate
           catalysis.The closely related histamine dehydrogenase
           catalyzes oxidative deamination of histamine..
          Length = 370

 Score = 28.3 bits (63), Expect = 5.6
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 454 STRFAAIKAHNISAQADVKSMTNGSVIASEAFYPFPDGIVEAIKAGVTAVIQPGGSVRDS 513
            +RF   + H       VK +T+  V+    F   PD +VE +K+G+  +I   G+ R S
Sbjct: 268 DSRFYP-EGHQEPYIKFVKQVTSKPVVGVGRFTS-PDKMVEVVKSGILDLI---GAARPS 322

Query: 514 EA 515
            A
Sbjct: 323 IA 324


>gnl|CDD|30350 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme
           metabolism].
          Length = 432

 Score = 27.8 bits (62), Expect = 6.8
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 5/42 (11%)

Query: 247 GIAHAVLVQGKPLSYNNINDLDAAFELVSEFRSQDCAACVIV 288
           G+   V      L YN++  L+ AFE        D  A VIV
Sbjct: 170 GVPADVAKHTLVLPYNDLEALEEAFE-----EYGDDIAAVIV 206


>gnl|CDD|30833 COG0486, ThdF, Predicted GTPase [General function prediction only].
          Length = 454

 Score = 27.8 bits (62), Expect = 7.4
 Identities = 17/56 (30%), Positives = 26/56 (46%)

Query: 72  IMGGRVKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCRED 127
           I G     +  K++GG+   +   AH   ++D   E ID V+V  +    SF  ED
Sbjct: 24  ISGPDALEIAQKLFGGLKLPKPRTAHYGHIKDENGEIIDEVLVLYFKAPNSFTGED 79


>gnl|CDD|113511 pfam04744, Monooxygenase_B, Monooxygenase subunit B protein.
           Family of membrane associated monooxygenases (EC
           1.13.12.-) which utilize O(2) to oxidize their
           substrate. Family members include both ammonia and
           methane monooxygenases involved in the oxidation of
           their respective substrates. These enzymes are
           multi-subunit complexes. This family represents the B
           subunit of the enzyme; the A subunit is thought to
           contain the active site..
          Length = 381

 Score = 27.8 bits (62), Expect = 7.7
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 7/52 (13%)

Query: 296 VATADTLVEAYR-RALSCDPISAFGGIIAF-----NREVDQEVAKEVIKVFT 341
           V   D   E  R   L  DP S FGG++ F     NR ++  +   VI VF 
Sbjct: 331 VEAKDAAWEVQRLSDLIYDPDSRFGGLLMFFDPSGNRYINS-IGGPVIPVFV 381


>gnl|CDD|31832 COG1646, COG1646, Predicted phosphate-binding enzymes, TIM-barrel
           fold [General function prediction only].
          Length = 240

 Score = 27.9 bits (62), Expect = 7.9
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 295 GVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAA 354
             A     VE   R LS  P+   GGI         E A+E+ +   + I+  T+ EE  
Sbjct: 174 SGAGDPVPVEMVSRVLSDTPLIVGGGI------RSPEQAREMAEAGADTIVTGTIIEEDP 227

Query: 355 DVLAK 359
           D   +
Sbjct: 228 DKALE 232


>gnl|CDD|31147 COG0804, UreC, Urea amidohydrolase (urease) alpha subunit [Amino
           acid transport and metabolism].
          Length = 568

 Score = 27.5 bits (61), Expect = 8.5
 Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 27/152 (17%)

Query: 375 HGEEIVL---KTVSGGI---LVQTRDNVVDNKELTVVTKRSPTDQELRDMKFAFKVVKHV 428
           +GEE+     K +  G+      TR   +D     V+T     D         + +VK  
Sbjct: 39  YGEEVKFGGGKVIRDGMGQSQRLTRAGALD----LVITNALIID--------YWGIVK-- 84

Query: 429 KSNAVVYAKDGRTVGIG-SGQTSRVDSTRFAAIKAHNISAQADVKSMTNGSVIASEAFYP 487
              A +  KDGR  GIG +G    +D        +  I A  + K +T G  I +   + 
Sbjct: 85  ---ADIGIKDGRIAGIGKAGNPDIMDGVTIIIGPSTEIIA-GEGKIVTAGG-IDTHIHFI 139

Query: 488 FPDGIVEAIKAGVTAVIQPG-GSVRDSEAITV 518
            P  I EA+ +G+T +I  G G    + A T 
Sbjct: 140 CPQQIEEALASGITTMIGGGTGPADGTNATTC 171


>gnl|CDD|30042 cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases,
           subgroup A is part of the superfamily of
           metallo-dependent hydrolases, a large group of proteins
           that show conservation in their 3-dimensional fold (TIM
           barrel) and in details of their active site. The vast
           majority of the members have a conserved metal binding
           site, involving four histidines and one aspartic acid
           residue. In the common reaction mechanism, the metal ion
           (or ions) deprotonate a water molecule for a
           nucleophilic attack on the substrate. The function of
           this subgroup is unknown..
          Length = 342

 Score = 27.6 bits (61), Expect = 8.8
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 489 PDGIVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFT 529
            + I  AI+AGV  +    G + D E I +  + GI +V T
Sbjct: 183 AEAIRRAIRAGVDTIEH--GFLIDDETIELMKEKGIFLVPT 221


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.319    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 6,252,675
Number of extensions: 334104
Number of successful extensions: 943
Number of sequences better than 10.0: 1
Number of HSP's gapped: 917
Number of HSP's successfully gapped: 30
Length of query: 536
Length of database: 6,263,737
Length adjustment: 98
Effective length of query: 438
Effective length of database: 4,146,055
Effective search space: 1815972090
Effective search space used: 1815972090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.1 bits)