RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780664|ref|YP_003065077.1| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [Candidatus Liberibacter asiaticus str. psy62] (536 letters) >gnl|CDD|179152 PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional. Length = 513 Score = 847 bits (2191), Expect = 0.0 Identities = 303/523 (57%), Positives = 381/523 (72%), Gaps = 15/523 (2%) Query: 16 VKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGG 75 +K ALISV +KTG+VEFA L+ G++I+STGGT +LL E GIPVT V D+T FPEI+ G Sbjct: 4 IKRALISVSDKTGIVEFAKALVELGVEILSTGGTAKLLAEAGIPVTEVSDVTGFPEILDG 63 Query: 76 RVKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCRED-DYYTMVE 134 RVKTLHPKI+GGIL+ RDNP H+ +++H +E IDLVVVNLYPFEE+ + +E Sbjct: 64 RVKTLHPKIHGGILARRDNPEHVAALEEHGIEPIDLVVVNLYPFEETVAKPGVTLEEAIE 123 Query: 135 NIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVNNGKIPYNFRKKMARQAFSRTA 194 NIDIGGP+M+RAAAKNH V ++ +P DY L E+ NG R ++A +AF+ TA Sbjct: 124 NIDIGGPTMVRAAAKNHKDVAVVVDPADYDAVLEELK-ANGSTTLETRFRLAAKAFAHTA 182 Query: 195 SYDTAICRWLANAESENFPDYLNITAVKKQEMRYGENPHQKAALYSTPEKKSGIAHAVLV 254 +YD AI +L E FP+ LN++ KKQ++RYGENPHQKAA Y P + G+A A + Sbjct: 183 AYDAAIANYLTEQVGEEFPETLNLSFEKKQDLRYGENPHQKAAFYRDPNAEGGVATAEQL 242 Query: 255 QGKPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDP 314 QGK LSYNNI D DAA ELV EF D ACVIVKH NPCGVA DT++EAY +A +CDP Sbjct: 243 QGKELSYNNIADADAALELVKEF---DEPACVIVKHANPCGVAVGDTILEAYDKAYACDP 299 Query: 315 ISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDF 374 +SAFGGIIAFNREVD E A+ + K+F E IIAP+ SEEA ++LAKK ++R L+ + Sbjct: 300 VSAFGGIIAFNREVDAETAEAIHKIFLEVIIAPSFSEEALEILAKKKNLRLLECPFPGGW 359 Query: 375 HGEEIVLKTVSGGILVQTRDNVVDN-KELTVVTKRSPTDQELRDMKFAFKVVKHVKSNAV 433 G+ K+VSGG+LVQ RD + + +L VVTKR PT+QEL+D+ FA+KVVKHVKSNA+ Sbjct: 360 EGD---FKSVSGGLLVQDRDLGMVDPADLKVVTKRQPTEQELKDLLFAWKVVKHVKSNAI 416 Query: 434 VYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQADVKSMTNGSVIASEAFYPFPDGIV 493 VYAKDG+TVGIG+GQ SRVDS R A KA D G+V+AS+AF+PF DG+ Sbjct: 417 VYAKDGQTVGIGAGQMSRVDSARIAIEKA------GDAGLDLKGAVLASDAFFPFRDGVE 470 Query: 494 EAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFTGIRHFRH 536 A KAG+TA+IQPGGS+RD E I AD+HGIAMVFTG+RHFRH Sbjct: 471 AAAKAGITAIIQPGGSIRDEEVIAAADEHGIAMVFTGVRHFRH 513 >gnl|CDD|161835 TIGR00355, purH, phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region. Length = 511 Score = 609 bits (1571), Expect = e-175 Identities = 281/523 (53%), Positives = 358/523 (68%), Gaps = 15/523 (2%) Query: 17 KTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGR 76 + AL+SV +KTG+VEFA L+ RG++++STGGT +LL E G+PVT V D T FPE+M GR Sbjct: 1 RRALLSVSDKTGIVEFAQGLVERGVELLSTGGTAKLLAEAGVPVTEVSDYTGFPEMMDGR 60 Query: 77 VKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCRED-DYYTMVEN 135 VKTLHPK++GGIL+ R + +++H +E IDLVVVNLYPF+E+ + VEN Sbjct: 61 VKTLHPKVHGGILARRGDDD-DADLEEHGIEPIDLVVVNLYPFKETVAKPGVTLAEAVEN 119 Query: 136 IDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVNNGKIPYNFRKKMARQAFSRTAS 195 IDIGGP+M+RAAAKNH VTIL +P+DY L+E+D G I R +A +AF TA+ Sbjct: 120 IDIGGPTMLRAAAKNHADVTILVDPKDYSAILSELD-EQGSISLALRFDLAIKAFEHTAA 178 Query: 196 YDTAICRWLANAESENFPDYLNITAVKKQEMRYGENPHQKAALYSTP-EKKSGIAHAVLV 254 YD AI + E P N+ KKQ +RYGENPHQKAA Y T K+ +A A + Sbjct: 179 YDAAIANYFGKLVGEKEPRQFNLNFTKKQTLRYGENPHQKAAFYVTQNVKEGSVATAEQL 238 Query: 255 QGKPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDP 314 QGK LSYNNI D DAA E+V EF D A VIVKH NPCGVA T+++AY RA DP Sbjct: 239 QGKELSYNNIADADAALEIVKEF---DEPAAVIVKHANPCGVALGKTILDAYDRAFGADP 295 Query: 315 ISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDF 374 SAFGGIIA NRE+D AK +++ F E IIAP S EA ++LAKK ++R L + Sbjct: 296 TSAFGGIIALNRELDVPTAKAIVRQFLEVIIAPGYSAEALEILAKKKNLRVL-ILGIWAN 354 Query: 375 HGEEIVLKTVSGGILVQTRDN-VVDNKELTVVTKRSPTDQELRDMKFAFKVVKHVKSNAV 433 E+ K V+GG+LVQ RD+ +VD L VVTKR PT+QEL D+ FA+KV KHVKSNA+ Sbjct: 355 RVPELDFKRVNGGLLVQDRDDGMVDQSTLKVVTKRQPTEQELIDLLFAWKVAKHVKSNAI 414 Query: 434 VYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQADVKSMTNGSVIASEAFYPFPDGIV 493 VYAK+ TVG+G+GQ SRV S + A IKA + +A GS +AS+AF+PF DG+ Sbjct: 415 VYAKNNMTVGVGAGQMSRVGSAKIAGIKADDEGLEA------KGSSLASDAFFPFRDGVE 468 Query: 494 EAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFTGIRHFRH 536 EA AG+T +IQPGGS+RD ++I AD+HGI MVFTG+RHFRH Sbjct: 469 EAAAAGITCIIQPGGSMRDEDSIWAADEHGIVMVFTGMRHFRH 511 >gnl|CDD|178479 PLN02891, PLN02891, IMP cyclohydrolase. Length = 547 Score = 515 bits (1328), Expect = e-146 Identities = 241/546 (44%), Positives = 336/546 (61%), Gaps = 43/546 (7%) Query: 15 AVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMG 74 K ALIS+ +KT + A+ L G I+STGGT LE G+ VT V ++T FPE++ Sbjct: 21 GKKQALISLSDKTDLALLANGLQELGYTIVSTGGTASALEAAGVSVTKVEELTNFPEMLD 80 Query: 75 GRVKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCRED-DYYTMV 133 GRVKTLHP ++GGIL+ RD HM+ + +H + +ID+VVVNLYPF ++ + V Sbjct: 81 GRVKTLHPAVHGGILARRDQEHHMEALNEHGIGTIDVVVVNLYPFYDTVTSGGISFEDGV 140 Query: 134 ENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVNNGKIPYNFRKKMARQAFSRT 193 ENIDIGGP+MIRAAAKNH V ++ +P DYP L + +FR+K+A +AF Sbjct: 141 ENIDIGGPAMIRAAAKNHKDVLVVVDPADYPALLEYLKGKQDD-QQDFRRKLAWKAFQHV 199 Query: 194 ASYDTAICRWL--ANAESENFPDYLNITAVKKQEMRYGENPHQKAALYSTPEKKS----- 246 ASYD+A+ WL FP L + K +RYGENPHQKAA Y KS Sbjct: 200 ASYDSAVSEWLWKQINGGGKFPPSLTVPLTLKSSLRYGENPHQKAAFY---VDKSLSEVN 256 Query: 247 --GIAHAVLVQGKPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVE 304 GIA A+ GK +SYNN D DAA+ VSEF + CV+VKH NPCGVA+ ++E Sbjct: 257 AGGIATAIQHHGKEMSYNNYLDADAAWNCVSEFSN---PTCVVVKHTNPCGVASRGDILE 313 Query: 305 AYRRALSCDPISAFGGIIAFNREVDQEVAKEV----------IKVFTEAIIAPTLSEEAA 354 AYR A+ DP+SAFGGI+AFN EVD+++A+E+ ++F E ++AP +E+ Sbjct: 314 AYRLAVRADPVSAFGGIVAFNCEVDEDLAREIREFRSPTDGETRMFYEIVVAPKYTEKGL 373 Query: 355 DVL-AKKPSMRFLKTSSLLDFHGEEIVLKTVSGGILVQTRDNVV-DNKELTVVTKRSPTD 412 +VL K ++R L+ + L+ V GG L Q D++ ++ TVV+++ PT+ Sbjct: 374 EVLKGKSKTLRILEAKPR---KKGRLSLRQVGGGWLAQDSDDLTPEDITFTVVSEKVPTE 430 Query: 413 QELRDMKFAFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQADVK 472 EL D KFA+ VKHVKSNA+V AK+ R +G+GSGQ +RV+S R A KA Sbjct: 431 SELEDAKFAWLCVKHVKSNAIVVAKNNRMLGMGSGQPNRVESLRIALEKA---------G 481 Query: 473 SMTNGSVIASEAFYPFP--DGIVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFTG 530 G+ +AS+AF+PF D + EA +AGV + +PGGS+RD +AI +++G+A++FTG Sbjct: 482 EEAKGAALASDAFFPFAWNDAVEEACQAGVKVIAEPGGSMRDQDAIDCCNKYGVALLFTG 541 Query: 531 IRHFRH 536 +RHFRH Sbjct: 542 VRHFRH 547 >gnl|CDD|129034 smart00798, AICARFT_IMPCHas, AICARFT/IMPCHase bienzyme. This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP. Length = 311 Score = 495 bits (1277), Expect = e-140 Identities = 179/317 (56%), Positives = 227/317 (71%), Gaps = 7/317 (2%) Query: 147 AAKNHDYVTILTNPQDYPLFLAEMDVNNGKIPYNFRKKMARQAFSRTASYDTAICRWLAN 206 AAKNH VT++ +P DY L E+ G + RK++A +AF+ TA+YD AI +LA Sbjct: 1 AAKNHKDVTVVVDPADYAEVLEELK-AGGGLSLETRKRLAAKAFAHTAAYDAAISNYLAK 59 Query: 207 AESENFPDYLNITAVKKQEMRYGENPHQKAALYSTPEKKSGIAHAVLVQGKPLSYNNIND 266 + FP+ L ++ KKQ++RYGENPHQKAA Y+ P+ GIA A +QGK LSYNNI D Sbjct: 60 QLASEFPETLTLSFEKKQDLRYGENPHQKAAFYTDPDALGGIATAKQLQGKELSYNNILD 119 Query: 267 LDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNR 326 DAA ELV EF D ACVIVKH NPCGVA DTL EAYR+A + DP+SAFGGIIAFNR Sbjct: 120 ADAALELVKEF---DEPACVIVKHANPCGVAVGDTLAEAYRKAYAADPVSAFGGIIAFNR 176 Query: 327 EVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDFHGEEIVLKTVSG 386 VD+E A+ + K+F E IIAP EEA ++L+KK ++R L+ L + + K+VSG Sbjct: 177 PVDEETAEAINKIFLEVIIAPDFDEEALEILSKKKNLRLLELGPL--PDPDGLEFKSVSG 234 Query: 387 GILVQTRDNVVDN-KELTVVTKRSPTDQELRDMKFAFKVVKHVKSNAVVYAKDGRTVGIG 445 G+LVQ RDN + ++L VVTKR PT++EL+D+ FA+KVVKHVKSNA+VYAKDG+TVGIG Sbjct: 235 GLLVQDRDNGGIDPEDLKVVTKRQPTEEELKDLLFAWKVVKHVKSNAIVYAKDGQTVGIG 294 Query: 446 SGQTSRVDSTRFAAIKA 462 +GQ SRVDS R AA KA Sbjct: 295 AGQMSRVDSARIAAEKA 311 >gnl|CDD|180841 PRK07106, PRK07106, 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional. Length = 390 Score = 137 bits (346), Expect = 1e-32 Identities = 87/268 (32%), Positives = 134/268 (50%), Gaps = 30/268 (11%) Query: 221 VKKQEMRYGENPHQKAALYSTPEKKSGIAHAVLVQGKPLSYNNINDLDA--AFELVSEFR 278 + + E++YG NP+QK A E + I VL G+P Y IN LDA +++LV E + Sbjct: 1 MNELELKYGCNPNQKPARIFMKEGELPIE--VL-NGRP-GY--INFLDALNSWQLVKELK 54 Query: 279 -SQDCAACVIVKHMNPCGVATA----DTL-----VE---------AYRRALSCDPISAFG 319 + A KH++P G A DTL V+ AY RA D +S++G Sbjct: 55 EATGLPAAASFKHVSPAGAAVGLPLSDTLKKIYFVDDMELSPLACAYARARGADRMSSYG 114 Query: 320 GIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDFHGEEI 379 A + D E AK + + ++ IIAP + EA ++L K + ++ I Sbjct: 115 DFAALSDVCDVETAKLLKREVSDGIIAPGYTPEALEILKAKKKGNYNIIKIDPNYEPAPI 174 Query: 380 VLKTVSGGILVQTRDNVVDNKEL--TVVTK-RSPTDQELRDMKFAFKVVKHVKSNAVVYA 436 K V G Q R+ + +++L +VT+ + D+ RD+ A +K+ +SN+V YA Sbjct: 175 ETKDVFGITFEQGRNELKIDEDLLKNIVTENKELPDEAKRDLIIALITLKYTQSNSVCYA 234 Query: 437 KDGRTVGIGSGQTSRVDSTRFAAIKAHN 464 KDG+ +GIG+GQ SR+ TR A KA Sbjct: 235 KDGQAIGIGAGQQSRIHCTRLAGNKADI 262 Score = 78.6 bits (194), Expect = 4e-15 Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 1/66 (1%) Query: 471 VKSMTNGSVIASEAFYPFPDGIVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFTG 530 + ++T G + S+AF+PF D I A K+GV + QPGGS+RD I +++G+ M FTG Sbjct: 326 LATLT-GVALGSDAFFPFGDNIERAAKSGVKYIAQPGGSIRDDNVIETCNKYGMTMAFTG 384 Query: 531 IRHFRH 536 +R F H Sbjct: 385 VRLFHH 390 >gnl|CDD|129084 smart00851, MGS, MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357. Length = 90 Score = 90.6 bits (226), Expect = 1e-18 Identities = 43/117 (36%), Positives = 59/117 (50%), Gaps = 29/117 (24%) Query: 28 GVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGG 87 G+VE A RL G ++++TGGT + L E G+P VKTLHPK++GG Sbjct: 1 GLVELAKRLAELGFELVATGGTAKFLREAGLP-----------------VKTLHPKVHGG 43 Query: 88 ILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYY--TMVENIDIGGPS 142 IL+I + +++ E IDLV+ LYP ED ENIDI G + Sbjct: 44 ILAI------LDLIKNGE---IDLVINTLYPLGAQP-HEDGKALRRAAENIDIPGAT 90 >gnl|CDD|179998 PRK05294, carB, carbamoyl phosphate synthase large subunit; Reviewed. Length = 1066 Score = 50.9 bits (123), Expect = 9e-07 Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 2/48 (4%) Query: 18 TALISVHN--KTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSV 63 T +SV + K VVE A RLL G KI++T GT + L E GIPV V Sbjct: 939 TVFLSVRDRDKEEVVELAKRLLELGFKILATSGTAKFLREAGIPVELV 986 >gnl|CDD|178336 PLN02735, PLN02735, carbamoyl-phosphate synthase. Length = 1102 Score = 43.2 bits (102), Expect = 1e-04 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Query: 18 TALISVHNKT--GVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDI 66 T IS+++ T +V A L G +I+ST GT LE GIPV V + Sbjct: 974 TVFISLNDLTKPHLVPIARGFLELGFRIVSTSGTAHFLELAGIPVERVLKL 1024 >gnl|CDD|162321 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes. Length = 1050 Score = 41.1 bits (97), Expect = 8e-04 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%) Query: 18 TALISV--HNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDIT-KFPEIM 73 + L+SV +K +++ A +L +G K+ +T GT + L E GI V ++ P I+ Sbjct: 939 SVLLSVRDKDKEELLDLARKLAEKGYKLYATEGTAKFLGEAGIKPELVLKVSEGRPNIL 997 >gnl|CDD|183765 PRK12815, carB, carbamoyl phosphate synthase large subunit; Reviewed. Length = 1068 Score = 36.9 bits (86), Expect = 0.015 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Query: 18 TALISVH--NKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGG 75 T ISV +K V + A R G K+++T GT L EEGI V + + + Sbjct: 939 TIFISVRDEDKPEVTKLARRFAQLGFKLLATEGTANWLAEEGITTGVVEKVQEGSPSLLE 998 Query: 76 RVKT 79 R+K Sbjct: 999 RIKQ 1002 >gnl|CDD|148062 pfam06230, DUF1009, Protein of unknown function (DUF1009). Family of uncharacterized bacterial proteins. Length = 212 Score = 33.2 bits (77), Expect = 0.16 Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 38/145 (26%) Query: 404 VVTKRSPTDQELRDMKFAFKVVKHVKS----NAVVYAKDGRTVGI----GS-------GQ 448 V+T+R+P EL D+ +V K + + AVV KDG + + G+ G+ Sbjct: 84 VLTRRAPDKSELADIARGAEVAKALGALDIGQAVV-VKDGAVLAVEAIEGTDAMLRRVGE 142 Query: 449 TSRVDSTRFAAIKAHNISAQ---ADVKSMTNGSVIASEAFYPFPDGIVEAIKAGVTA-VI 504 R +KA Q D+ ++ G PD I A +AG+ + Sbjct: 143 LRR--GRGGVLVKAPK-PGQDLRFDLPTI--G-----------PDTIETAAEAGLAGIAV 186 Query: 505 QPGGS-VRDSEA-ITVADQHGIAMV 527 + G + V D EA I AD G+ +V Sbjct: 187 EAGKTLVLDREAVIAAADAAGLFVV 211 >gnl|CDD|181787 PRK09343, PRK09343, prefoldin subunit beta; Provisional. Length = 121 Score = 31.2 bits (71), Expect = 0.62 Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 4/40 (10%) Query: 404 VVTKRSPTDQELRDMKFAFKVVKHVKSNAVVYAKDGRTVG 443 ++ ++S D ELR++ A + ++ + + +Y + VG Sbjct: 26 LLQQKSQIDLELREINKALEELEKLPDDTPIY----KIVG 61 >gnl|CDD|179435 PRK02506, PRK02506, dihydroorotate dehydrogenase 1A; Reviewed. Length = 310 Score = 31.1 bits (71), Expect = 0.81 Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 31/83 (37%) Query: 12 GEIAVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQ-------------------L 52 G+ TAL +V F RL I+II TGG Sbjct: 220 GDYIKPTALANVR------AFYQRLNP-SIQIIGTGGVKTGRDAFEHILCGASMVQVGTA 272 Query: 53 LEEEGIPVTSVFD-ITK-FPEIM 73 L +EG +VF+ +TK IM Sbjct: 273 LHKEGP---AVFERLTKELKAIM 292 >gnl|CDD|128644 smart00350, MCM, minichromosome maintenance proteins. Length = 509 Score = 29.2 bits (66), Expect = 3.2 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Query: 323 AFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKK 360 A + QE ++ I + I P LSEEAA+ L K Sbjct: 413 ADEVPISQEFLRKYIA-YAREKIKPKLSEEAAEKLVKA 449 >gnl|CDD|179704 PRK04004, PRK04004, translation initiation factor IF-2; Validated. Length = 586 Score = 28.2 bits (64), Expect = 5.0 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 6/37 (16%) Query: 313 DPISAFGGIIAFN----REVDQEVAKEVIKVFTEAII 345 DP+ +G I+AFN + ++E K +K+FT +I Sbjct: 403 DPL--YGVILAFNVKVLPDAEEEAEKSDVKIFTGDVI 437 >gnl|CDD|184075 PRK13478, PRK13478, phosphonoacetaldehyde hydrolase; Provisional. Length = 267 Score = 27.9 bits (63), Expect = 6.0 Identities = 12/21 (57%), Positives = 15/21 (71%) Query: 28 GVVEFASRLLSRGIKIISTGG 48 GV+E + L +RGIKI ST G Sbjct: 105 GVLEVIAALRARGIKIGSTTG 125 >gnl|CDD|163259 TIGR03429, arom_pren_DMATS, aromatic prenyltransferase, DMATS type. Members of this protein family are mostly fungal enzymes of secondary metabolite production. Characterized or partially characterized members include several examples of dimethylallyltryptophan synthase, a brevianamide F prenyltransferase, LtxC from lyngbyatoxin biosynthesis, and a probable dimethylallyl tyrosine synthase. Length = 406 Score = 28.1 bits (63), Expect = 6.9 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%) Query: 348 TLSEEAADVLAKKPSMRFLKTSSLL--DFHGEEIVLKT 383 TL+ + A +L +K L+ L D G +VLK Sbjct: 141 TLTPDEAALLREKLPKGPLRPQMWLAFDLKGGGVVLKV 178 >gnl|CDD|131952 TIGR02906, spore_CotS, spore coat protein, CotS family. Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers. Length = 313 Score = 27.6 bits (62), Expect = 9.1 Identities = 7/24 (29%), Positives = 14/24 (58%) Query: 254 VQGKPLSYNNINDLDAAFELVSEF 277 ++G+ +NN DL A + ++ F Sbjct: 77 IEGRECDFNNPIDLKKAAKGLALF 100 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.134 0.384 Gapped Lambda K H 0.267 0.0725 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 8,716,554 Number of extensions: 572245 Number of successful extensions: 1234 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1200 Number of HSP's successfully gapped: 28 Length of query: 536 Length of database: 5,994,473 Length adjustment: 98 Effective length of query: 438 Effective length of database: 3,876,889 Effective search space: 1698077382 Effective search space used: 1698077382 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 60 (26.9 bits)