RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780664|ref|YP_003065077.1| bifunctional
phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP
cyclohydrolase [Candidatus Liberibacter asiaticus str. psy62]
(536 letters)
>gnl|CDD|179152 PRK00881, purH, bifunctional
phosphoribosylaminoimidazolecarboxamide
formyltransferase/IMP cyclohydrolase; Provisional.
Length = 513
Score = 847 bits (2191), Expect = 0.0
Identities = 303/523 (57%), Positives = 381/523 (72%), Gaps = 15/523 (2%)
Query: 16 VKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGG 75
+K ALISV +KTG+VEFA L+ G++I+STGGT +LL E GIPVT V D+T FPEI+ G
Sbjct: 4 IKRALISVSDKTGIVEFAKALVELGVEILSTGGTAKLLAEAGIPVTEVSDVTGFPEILDG 63
Query: 76 RVKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCRED-DYYTMVE 134
RVKTLHPKI+GGIL+ RDNP H+ +++H +E IDLVVVNLYPFEE+ + +E
Sbjct: 64 RVKTLHPKIHGGILARRDNPEHVAALEEHGIEPIDLVVVNLYPFEETVAKPGVTLEEAIE 123
Query: 135 NIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVNNGKIPYNFRKKMARQAFSRTA 194
NIDIGGP+M+RAAAKNH V ++ +P DY L E+ NG R ++A +AF+ TA
Sbjct: 124 NIDIGGPTMVRAAAKNHKDVAVVVDPADYDAVLEELK-ANGSTTLETRFRLAAKAFAHTA 182
Query: 195 SYDTAICRWLANAESENFPDYLNITAVKKQEMRYGENPHQKAALYSTPEKKSGIAHAVLV 254
+YD AI +L E FP+ LN++ KKQ++RYGENPHQKAA Y P + G+A A +
Sbjct: 183 AYDAAIANYLTEQVGEEFPETLNLSFEKKQDLRYGENPHQKAAFYRDPNAEGGVATAEQL 242
Query: 255 QGKPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDP 314
QGK LSYNNI D DAA ELV EF D ACVIVKH NPCGVA DT++EAY +A +CDP
Sbjct: 243 QGKELSYNNIADADAALELVKEF---DEPACVIVKHANPCGVAVGDTILEAYDKAYACDP 299
Query: 315 ISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDF 374
+SAFGGIIAFNREVD E A+ + K+F E IIAP+ SEEA ++LAKK ++R L+ +
Sbjct: 300 VSAFGGIIAFNREVDAETAEAIHKIFLEVIIAPSFSEEALEILAKKKNLRLLECPFPGGW 359
Query: 375 HGEEIVLKTVSGGILVQTRDNVVDN-KELTVVTKRSPTDQELRDMKFAFKVVKHVKSNAV 433
G+ K+VSGG+LVQ RD + + +L VVTKR PT+QEL+D+ FA+KVVKHVKSNA+
Sbjct: 360 EGD---FKSVSGGLLVQDRDLGMVDPADLKVVTKRQPTEQELKDLLFAWKVVKHVKSNAI 416
Query: 434 VYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQADVKSMTNGSVIASEAFYPFPDGIV 493
VYAKDG+TVGIG+GQ SRVDS R A KA D G+V+AS+AF+PF DG+
Sbjct: 417 VYAKDGQTVGIGAGQMSRVDSARIAIEKA------GDAGLDLKGAVLASDAFFPFRDGVE 470
Query: 494 EAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFTGIRHFRH 536
A KAG+TA+IQPGGS+RD E I AD+HGIAMVFTG+RHFRH
Sbjct: 471 AAAKAGITAIIQPGGSIRDEEVIAAADEHGIAMVFTGVRHFRH 513
>gnl|CDD|161835 TIGR00355, purH, phosphoribosylaminoimidazolecarboxamide
formyltransferase/IMP cyclohydrolase. Involved in
purine ribonucleotide biosynthesis. The IMP
cyclohydrolase activity is in the N-terminal region.
Length = 511
Score = 609 bits (1571), Expect = e-175
Identities = 281/523 (53%), Positives = 358/523 (68%), Gaps = 15/523 (2%)
Query: 17 KTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGR 76
+ AL+SV +KTG+VEFA L+ RG++++STGGT +LL E G+PVT V D T FPE+M GR
Sbjct: 1 RRALLSVSDKTGIVEFAQGLVERGVELLSTGGTAKLLAEAGVPVTEVSDYTGFPEMMDGR 60
Query: 77 VKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCRED-DYYTMVEN 135
VKTLHPK++GGIL+ R + +++H +E IDLVVVNLYPF+E+ + VEN
Sbjct: 61 VKTLHPKVHGGILARRGDDD-DADLEEHGIEPIDLVVVNLYPFKETVAKPGVTLAEAVEN 119
Query: 136 IDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVNNGKIPYNFRKKMARQAFSRTAS 195
IDIGGP+M+RAAAKNH VTIL +P+DY L+E+D G I R +A +AF TA+
Sbjct: 120 IDIGGPTMLRAAAKNHADVTILVDPKDYSAILSELD-EQGSISLALRFDLAIKAFEHTAA 178
Query: 196 YDTAICRWLANAESENFPDYLNITAVKKQEMRYGENPHQKAALYSTP-EKKSGIAHAVLV 254
YD AI + E P N+ KKQ +RYGENPHQKAA Y T K+ +A A +
Sbjct: 179 YDAAIANYFGKLVGEKEPRQFNLNFTKKQTLRYGENPHQKAAFYVTQNVKEGSVATAEQL 238
Query: 255 QGKPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDP 314
QGK LSYNNI D DAA E+V EF D A VIVKH NPCGVA T+++AY RA DP
Sbjct: 239 QGKELSYNNIADADAALEIVKEF---DEPAAVIVKHANPCGVALGKTILDAYDRAFGADP 295
Query: 315 ISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDF 374
SAFGGIIA NRE+D AK +++ F E IIAP S EA ++LAKK ++R L +
Sbjct: 296 TSAFGGIIALNRELDVPTAKAIVRQFLEVIIAPGYSAEALEILAKKKNLRVL-ILGIWAN 354
Query: 375 HGEEIVLKTVSGGILVQTRDN-VVDNKELTVVTKRSPTDQELRDMKFAFKVVKHVKSNAV 433
E+ K V+GG+LVQ RD+ +VD L VVTKR PT+QEL D+ FA+KV KHVKSNA+
Sbjct: 355 RVPELDFKRVNGGLLVQDRDDGMVDQSTLKVVTKRQPTEQELIDLLFAWKVAKHVKSNAI 414
Query: 434 VYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQADVKSMTNGSVIASEAFYPFPDGIV 493
VYAK+ TVG+G+GQ SRV S + A IKA + +A GS +AS+AF+PF DG+
Sbjct: 415 VYAKNNMTVGVGAGQMSRVGSAKIAGIKADDEGLEA------KGSSLASDAFFPFRDGVE 468
Query: 494 EAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFTGIRHFRH 536
EA AG+T +IQPGGS+RD ++I AD+HGI MVFTG+RHFRH
Sbjct: 469 EAAAAGITCIIQPGGSMRDEDSIWAADEHGIVMVFTGMRHFRH 511
>gnl|CDD|178479 PLN02891, PLN02891, IMP cyclohydrolase.
Length = 547
Score = 515 bits (1328), Expect = e-146
Identities = 241/546 (44%), Positives = 336/546 (61%), Gaps = 43/546 (7%)
Query: 15 AVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMG 74
K ALIS+ +KT + A+ L G I+STGGT LE G+ VT V ++T FPE++
Sbjct: 21 GKKQALISLSDKTDLALLANGLQELGYTIVSTGGTASALEAAGVSVTKVEELTNFPEMLD 80
Query: 75 GRVKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCRED-DYYTMV 133
GRVKTLHP ++GGIL+ RD HM+ + +H + +ID+VVVNLYPF ++ + V
Sbjct: 81 GRVKTLHPAVHGGILARRDQEHHMEALNEHGIGTIDVVVVNLYPFYDTVTSGGISFEDGV 140
Query: 134 ENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVNNGKIPYNFRKKMARQAFSRT 193
ENIDIGGP+MIRAAAKNH V ++ +P DYP L + +FR+K+A +AF
Sbjct: 141 ENIDIGGPAMIRAAAKNHKDVLVVVDPADYPALLEYLKGKQDD-QQDFRRKLAWKAFQHV 199
Query: 194 ASYDTAICRWL--ANAESENFPDYLNITAVKKQEMRYGENPHQKAALYSTPEKKS----- 246
ASYD+A+ WL FP L + K +RYGENPHQKAA Y KS
Sbjct: 200 ASYDSAVSEWLWKQINGGGKFPPSLTVPLTLKSSLRYGENPHQKAAFY---VDKSLSEVN 256
Query: 247 --GIAHAVLVQGKPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVE 304
GIA A+ GK +SYNN D DAA+ VSEF + CV+VKH NPCGVA+ ++E
Sbjct: 257 AGGIATAIQHHGKEMSYNNYLDADAAWNCVSEFSN---PTCVVVKHTNPCGVASRGDILE 313
Query: 305 AYRRALSCDPISAFGGIIAFNREVDQEVAKEV----------IKVFTEAIIAPTLSEEAA 354
AYR A+ DP+SAFGGI+AFN EVD+++A+E+ ++F E ++AP +E+
Sbjct: 314 AYRLAVRADPVSAFGGIVAFNCEVDEDLAREIREFRSPTDGETRMFYEIVVAPKYTEKGL 373
Query: 355 DVL-AKKPSMRFLKTSSLLDFHGEEIVLKTVSGGILVQTRDNVV-DNKELTVVTKRSPTD 412
+VL K ++R L+ + L+ V GG L Q D++ ++ TVV+++ PT+
Sbjct: 374 EVLKGKSKTLRILEAKPR---KKGRLSLRQVGGGWLAQDSDDLTPEDITFTVVSEKVPTE 430
Query: 413 QELRDMKFAFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQADVK 472
EL D KFA+ VKHVKSNA+V AK+ R +G+GSGQ +RV+S R A KA
Sbjct: 431 SELEDAKFAWLCVKHVKSNAIVVAKNNRMLGMGSGQPNRVESLRIALEKA---------G 481
Query: 473 SMTNGSVIASEAFYPFP--DGIVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFTG 530
G+ +AS+AF+PF D + EA +AGV + +PGGS+RD +AI +++G+A++FTG
Sbjct: 482 EEAKGAALASDAFFPFAWNDAVEEACQAGVKVIAEPGGSMRDQDAIDCCNKYGVALLFTG 541
Query: 531 IRHFRH 536
+RHFRH
Sbjct: 542 VRHFRH 547
>gnl|CDD|129034 smart00798, AICARFT_IMPCHas, AICARFT/IMPCHase bienzyme. This is a
family of bifunctional enzymes catalysing the last two
steps in de novo purine biosynthesis. The bifunctional
enzyme is found in both prokaryotes and eukaryotes. The
second last step is catalysed by
5-aminoimidazole-4-carboxamide ribonucleotide
formyltransferase (AICARFT), this enzyme catalyses the
formylation of AICAR with 10-formyl-tetrahydrofolate to
yield FAICAR and tetrahydrofolate. The last step is
catalysed by IMP (Inosine monophosphate) cyclohydrolase
(IMPCHase), cyclizing FAICAR
(5-formylaminoimidazole-4-carboxamide ribonucleotide) to
IMP.
Length = 311
Score = 495 bits (1277), Expect = e-140
Identities = 179/317 (56%), Positives = 227/317 (71%), Gaps = 7/317 (2%)
Query: 147 AAKNHDYVTILTNPQDYPLFLAEMDVNNGKIPYNFRKKMARQAFSRTASYDTAICRWLAN 206
AAKNH VT++ +P DY L E+ G + RK++A +AF+ TA+YD AI +LA
Sbjct: 1 AAKNHKDVTVVVDPADYAEVLEELK-AGGGLSLETRKRLAAKAFAHTAAYDAAISNYLAK 59
Query: 207 AESENFPDYLNITAVKKQEMRYGENPHQKAALYSTPEKKSGIAHAVLVQGKPLSYNNIND 266
+ FP+ L ++ KKQ++RYGENPHQKAA Y+ P+ GIA A +QGK LSYNNI D
Sbjct: 60 QLASEFPETLTLSFEKKQDLRYGENPHQKAAFYTDPDALGGIATAKQLQGKELSYNNILD 119
Query: 267 LDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNR 326
DAA ELV EF D ACVIVKH NPCGVA DTL EAYR+A + DP+SAFGGIIAFNR
Sbjct: 120 ADAALELVKEF---DEPACVIVKHANPCGVAVGDTLAEAYRKAYAADPVSAFGGIIAFNR 176
Query: 327 EVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDFHGEEIVLKTVSG 386
VD+E A+ + K+F E IIAP EEA ++L+KK ++R L+ L + + K+VSG
Sbjct: 177 PVDEETAEAINKIFLEVIIAPDFDEEALEILSKKKNLRLLELGPL--PDPDGLEFKSVSG 234
Query: 387 GILVQTRDNVVDN-KELTVVTKRSPTDQELRDMKFAFKVVKHVKSNAVVYAKDGRTVGIG 445
G+LVQ RDN + ++L VVTKR PT++EL+D+ FA+KVVKHVKSNA+VYAKDG+TVGIG
Sbjct: 235 GLLVQDRDNGGIDPEDLKVVTKRQPTEEELKDLLFAWKVVKHVKSNAIVYAKDGQTVGIG 294
Query: 446 SGQTSRVDSTRFAAIKA 462
+GQ SRVDS R AA KA
Sbjct: 295 AGQMSRVDSARIAAEKA 311
>gnl|CDD|180841 PRK07106, PRK07106, 5-aminoimidazole-4-carboxamide ribonucleotide
transformylase; Provisional.
Length = 390
Score = 137 bits (346), Expect = 1e-32
Identities = 87/268 (32%), Positives = 134/268 (50%), Gaps = 30/268 (11%)
Query: 221 VKKQEMRYGENPHQKAALYSTPEKKSGIAHAVLVQGKPLSYNNINDLDA--AFELVSEFR 278
+ + E++YG NP+QK A E + I VL G+P Y IN LDA +++LV E +
Sbjct: 1 MNELELKYGCNPNQKPARIFMKEGELPIE--VL-NGRP-GY--INFLDALNSWQLVKELK 54
Query: 279 -SQDCAACVIVKHMNPCGVATA----DTL-----VE---------AYRRALSCDPISAFG 319
+ A KH++P G A DTL V+ AY RA D +S++G
Sbjct: 55 EATGLPAAASFKHVSPAGAAVGLPLSDTLKKIYFVDDMELSPLACAYARARGADRMSSYG 114
Query: 320 GIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDFHGEEI 379
A + D E AK + + ++ IIAP + EA ++L K + ++ I
Sbjct: 115 DFAALSDVCDVETAKLLKREVSDGIIAPGYTPEALEILKAKKKGNYNIIKIDPNYEPAPI 174
Query: 380 VLKTVSGGILVQTRDNVVDNKEL--TVVTK-RSPTDQELRDMKFAFKVVKHVKSNAVVYA 436
K V G Q R+ + +++L +VT+ + D+ RD+ A +K+ +SN+V YA
Sbjct: 175 ETKDVFGITFEQGRNELKIDEDLLKNIVTENKELPDEAKRDLIIALITLKYTQSNSVCYA 234
Query: 437 KDGRTVGIGSGQTSRVDSTRFAAIKAHN 464
KDG+ +GIG+GQ SR+ TR A KA
Sbjct: 235 KDGQAIGIGAGQQSRIHCTRLAGNKADI 262
Score = 78.6 bits (194), Expect = 4e-15
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 471 VKSMTNGSVIASEAFYPFPDGIVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFTG 530
+ ++T G + S+AF+PF D I A K+GV + QPGGS+RD I +++G+ M FTG
Sbjct: 326 LATLT-GVALGSDAFFPFGDNIERAAKSGVKYIAQPGGSIRDDNVIETCNKYGMTMAFTG 384
Query: 531 IRHFRH 536
+R F H
Sbjct: 385 VRLFHH 390
>gnl|CDD|129084 smart00851, MGS, MGS-like domain. This domain composes the whole
protein of methylglyoxal synthetase and the domain is
also found in Carbamoyl phosphate synthetase (CPS) where
it forms a regulatory domain that binds to the
allosteric effector ornithine. This family also includes
inosicase. The known structures in this family show a
common phosphate binding site PUBMED:10526357.
Length = 90
Score = 90.6 bits (226), Expect = 1e-18
Identities = 43/117 (36%), Positives = 59/117 (50%), Gaps = 29/117 (24%)
Query: 28 GVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGG 87
G+VE A RL G ++++TGGT + L E G+P VKTLHPK++GG
Sbjct: 1 GLVELAKRLAELGFELVATGGTAKFLREAGLP-----------------VKTLHPKVHGG 43
Query: 88 ILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYY--TMVENIDIGGPS 142
IL+I + +++ E IDLV+ LYP ED ENIDI G +
Sbjct: 44 ILAI------LDLIKNGE---IDLVINTLYPLGAQP-HEDGKALRRAAENIDIPGAT 90
>gnl|CDD|179998 PRK05294, carB, carbamoyl phosphate synthase large subunit;
Reviewed.
Length = 1066
Score = 50.9 bits (123), Expect = 9e-07
Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 18 TALISVHN--KTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSV 63
T +SV + K VVE A RLL G KI++T GT + L E GIPV V
Sbjct: 939 TVFLSVRDRDKEEVVELAKRLLELGFKILATSGTAKFLREAGIPVELV 986
>gnl|CDD|178336 PLN02735, PLN02735, carbamoyl-phosphate synthase.
Length = 1102
Score = 43.2 bits (102), Expect = 1e-04
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 18 TALISVHNKT--GVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDI 66
T IS+++ T +V A L G +I+ST GT LE GIPV V +
Sbjct: 974 TVFISLNDLTKPHLVPIARGFLELGFRIVSTSGTAHFLELAGIPVERVLKL 1024
>gnl|CDD|162321 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large
subunit. In several thermophilic species
(Methanobacterium thermoautotrophicum, Methanococcus
jannaschii, Aquifex aeolicus), the large subunit appears
split, at different points, into two separate genes.
Length = 1050
Score = 41.1 bits (97), Expect = 8e-04
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 18 TALISV--HNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDIT-KFPEIM 73
+ L+SV +K +++ A +L +G K+ +T GT + L E GI V ++ P I+
Sbjct: 939 SVLLSVRDKDKEELLDLARKLAEKGYKLYATEGTAKFLGEAGIKPELVLKVSEGRPNIL 997
>gnl|CDD|183765 PRK12815, carB, carbamoyl phosphate synthase large subunit; Reviewed.
Length = 1068
Score = 36.9 bits (86), Expect = 0.015
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 18 TALISVH--NKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGG 75
T ISV +K V + A R G K+++T GT L EEGI V + + +
Sbjct: 939 TIFISVRDEDKPEVTKLARRFAQLGFKLLATEGTANWLAEEGITTGVVEKVQEGSPSLLE 998
Query: 76 RVKT 79
R+K
Sbjct: 999 RIKQ 1002
>gnl|CDD|148062 pfam06230, DUF1009, Protein of unknown function (DUF1009). Family
of uncharacterized bacterial proteins.
Length = 212
Score = 33.2 bits (77), Expect = 0.16
Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 38/145 (26%)
Query: 404 VVTKRSPTDQELRDMKFAFKVVKHVKS----NAVVYAKDGRTVGI----GS-------GQ 448
V+T+R+P EL D+ +V K + + AVV KDG + + G+ G+
Sbjct: 84 VLTRRAPDKSELADIARGAEVAKALGALDIGQAVV-VKDGAVLAVEAIEGTDAMLRRVGE 142
Query: 449 TSRVDSTRFAAIKAHNISAQ---ADVKSMTNGSVIASEAFYPFPDGIVEAIKAGVTA-VI 504
R +KA Q D+ ++ G PD I A +AG+ +
Sbjct: 143 LRR--GRGGVLVKAPK-PGQDLRFDLPTI--G-----------PDTIETAAEAGLAGIAV 186
Query: 505 QPGGS-VRDSEA-ITVADQHGIAMV 527
+ G + V D EA I AD G+ +V
Sbjct: 187 EAGKTLVLDREAVIAAADAAGLFVV 211
>gnl|CDD|181787 PRK09343, PRK09343, prefoldin subunit beta; Provisional.
Length = 121
Score = 31.2 bits (71), Expect = 0.62
Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 404 VVTKRSPTDQELRDMKFAFKVVKHVKSNAVVYAKDGRTVG 443
++ ++S D ELR++ A + ++ + + +Y + VG
Sbjct: 26 LLQQKSQIDLELREINKALEELEKLPDDTPIY----KIVG 61
>gnl|CDD|179435 PRK02506, PRK02506, dihydroorotate dehydrogenase 1A; Reviewed.
Length = 310
Score = 31.1 bits (71), Expect = 0.81
Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 31/83 (37%)
Query: 12 GEIAVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQ-------------------L 52
G+ TAL +V F RL I+II TGG
Sbjct: 220 GDYIKPTALANVR------AFYQRLNP-SIQIIGTGGVKTGRDAFEHILCGASMVQVGTA 272
Query: 53 LEEEGIPVTSVFD-ITK-FPEIM 73
L +EG +VF+ +TK IM
Sbjct: 273 LHKEGP---AVFERLTKELKAIM 292
>gnl|CDD|128644 smart00350, MCM, minichromosome maintenance proteins.
Length = 509
Score = 29.2 bits (66), Expect = 3.2
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 323 AFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKK 360
A + QE ++ I + I P LSEEAA+ L K
Sbjct: 413 ADEVPISQEFLRKYIA-YAREKIKPKLSEEAAEKLVKA 449
>gnl|CDD|179704 PRK04004, PRK04004, translation initiation factor IF-2; Validated.
Length = 586
Score = 28.2 bits (64), Expect = 5.0
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Query: 313 DPISAFGGIIAFN----REVDQEVAKEVIKVFTEAII 345
DP+ +G I+AFN + ++E K +K+FT +I
Sbjct: 403 DPL--YGVILAFNVKVLPDAEEEAEKSDVKIFTGDVI 437
>gnl|CDD|184075 PRK13478, PRK13478, phosphonoacetaldehyde hydrolase; Provisional.
Length = 267
Score = 27.9 bits (63), Expect = 6.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 28 GVVEFASRLLSRGIKIISTGG 48
GV+E + L +RGIKI ST G
Sbjct: 105 GVLEVIAALRARGIKIGSTTG 125
>gnl|CDD|163259 TIGR03429, arom_pren_DMATS, aromatic prenyltransferase, DMATS type.
Members of this protein family are mostly fungal
enzymes of secondary metabolite production.
Characterized or partially characterized members include
several examples of dimethylallyltryptophan synthase, a
brevianamide F prenyltransferase, LtxC from lyngbyatoxin
biosynthesis, and a probable dimethylallyl tyrosine
synthase.
Length = 406
Score = 28.1 bits (63), Expect = 6.9
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 348 TLSEEAADVLAKKPSMRFLKTSSLL--DFHGEEIVLKT 383
TL+ + A +L +K L+ L D G +VLK
Sbjct: 141 TLTPDEAALLREKLPKGPLRPQMWLAFDLKGGGVVLKV 178
>gnl|CDD|131952 TIGR02906, spore_CotS, spore coat protein, CotS family. Members of
this family include the spore coat proteins CotS and
YtaA from Bacillus subtilis and, from other
endospore-forming bacteria, homologs that are more
closely related to these two than to the spore coat
proteins YutH and YsxE. The CotS family is more broadly
distributed than YutH or YsxE, but still is not
universal among spore-formers.
Length = 313
Score = 27.6 bits (62), Expect = 9.1
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 254 VQGKPLSYNNINDLDAAFELVSEF 277
++G+ +NN DL A + ++ F
Sbjct: 77 IEGRECDFNNPIDLKKAAKGLALF 100
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.134 0.384
Gapped
Lambda K H
0.267 0.0725 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 8,716,554
Number of extensions: 572245
Number of successful extensions: 1234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1200
Number of HSP's successfully gapped: 28
Length of query: 536
Length of database: 5,994,473
Length adjustment: 98
Effective length of query: 438
Effective length of database: 3,876,889
Effective search space: 1698077382
Effective search space used: 1698077382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)