RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780664|ref|YP_003065077.1| bifunctional
phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP
cyclohydrolase [Candidatus Liberibacter asiaticus str. psy62]
         (536 letters)



>d1zcza2 c.97.1.4 (A:158-452) AICAR transformylase domain of
           bifunctional purine biosynthesis enzyme ATIC {Thermotoga
           maritima [TaxId: 2336]}
          Length = 295

 Score =  262 bits (670), Expect = 5e-71
 Identities = 116/322 (36%), Positives = 173/322 (53%), Gaps = 28/322 (8%)

Query: 216 LNITAVKKQ-EMRYGENPHQKAALYSTPEKKSGIAHAVLVQGKPLSYNNINDLDAAFELV 274
           +++   ++  ++RYGENPH+KA +Y  P      A  +L +GK +S+NNI D + A+ + 
Sbjct: 1   ISLAFKREDLQLRYGENPHEKAFVYGKP------AFEILHEGKTISFNNILDAENAWFMA 54

Query: 275 SEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAK 334
                      V+VKH +PCG A  +  VE  ++A+  D  S+FGGI+A N E+D+EVAK
Sbjct: 55  KNL---PRMGAVVVKHQSPCGAAIGEDKVEIVKKAIEADDESSFGGILAVNFEMDEEVAK 111

Query: 335 EVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDFHGEEIVLKTVSGGILVQTRD 394
             +K + E I+AP+ ++EA +VL+KK               G+            +   +
Sbjct: 112 S-LKKYLEVIVAPSFTQEAIEVLSKKKVRLL--------KPGDYASWAGKMAFGSLVLSE 162

Query: 395 NVVDNKELTVVTKRSPTDQELRDMKFAFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDS 454
                    +V     +++EL D++FA++VV+  KSNAV+ AKDG TVGIGSGQ SR  +
Sbjct: 163 RKYPEGNFELVVGEPLSEKELEDLEFAYRVVEGAKSNAVLIAKDGVTVGIGSGQPSRKRA 222

Query: 455 TRFAAIKAHNISAQADVKSMTNGSVIASEAFYPFPDGIVEAIKAGVTAVIQPGGSVRDSE 514
              A + A              G+V AS+AF+PFPD +    +AGV AV+ P GS+RD E
Sbjct: 223 AWIATVMA---------GEKAKGAVAASDAFFPFPDSLEILAQAGVKAVVAPLGSIRDEE 273

Query: 515 AITVADQHGIAMVFTGIRHFRH 536
            I  A + GI       R FRH
Sbjct: 274 VIEKARELGITFYKAPSRVFRH 295


>d1g8ma2 c.97.1.4 (A:201-593) AICAR transformylase domain of
           bifunctional purine biosynthesis enzyme ATIC {Chicken
           (Gallus gallus) [TaxId: 9031]}
          Length = 393

 Score =  232 bits (593), Expect = 4e-62
 Identities = 98/396 (24%), Positives = 160/396 (40%), Gaps = 84/396 (21%)

Query: 221 VKKQEMRYGENPHQKAALYSTPEKKSGIAHAVLVQGKPLSYNNINDLDAAFELVSEF-RS 279
           V +  +RYG NPHQ  A   T   K  +     V      + N+ D   A++LV E  ++
Sbjct: 2   VSQLPLRYGMNPHQSPAQLYTTRPKLPLT----VVNGSPGFINLCDALNAWQLVKELKQA 57

Query: 280 QDCAACVIVKHMNPCGVA--------------------TADTLVEAYRRALSCDPISAFG 319
               A    KH++P G A                    T   L  AY R+   D +S+FG
Sbjct: 58  LGIPAAASFKHVSPAGAAVGIPLSEEEAQVCMVHDLHKTLTPLASAYARSRGADRMSSFG 117

Query: 320 GIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDFHGEEI 379
             IA +   D   AK + +  ++ ++AP   EEA  +L+KK +  +       ++  ++ 
Sbjct: 118 DFIALSDICDVPTAKIISREVSDGVVAPGYEEEALKILSKKKNGGYCVLQMDPNYEPDDN 177

Query: 380 VLKTVSGGILVQTRDNVVDNKE---LTVVTKRSPTDQELRDMKFAFKVVKHVKSNAVVYA 436
            ++T+ G  L+Q R+N V ++      V   ++  +  +RD+  A   VK+ +SN+V YA
Sbjct: 178 EIRTLYGLQLMQKRNNAVIDRSLFKNIVTKNKTLPESAVRDLIVASIAVKYTQSNSVCYA 237

Query: 437 KDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQADVKSM--------------------TN 476
           KDG+ +GIG+GQ SR+  TR A  KA++   +   + +                      
Sbjct: 238 KDGQVIGIGAGQQSRIHCTRLAGDKANSWWLRHHPRVLSMKFKAGVKRAEVSNAIDQYVT 297

Query: 477 GSVIASE-------AFYPFPDGIVEAIKA---------------------GVTAVIQPG- 507
           G++   E        F   P  + EA K                       V    + G 
Sbjct: 298 GTIGEDEDLVKWQAMFEEVPAQLTEAEKKQWIAKLTAVSLSSDAFFPFRDNVDRAKRIGV 357

Query: 508 -------GSVRDSEAITVADQHGIAMVFTGIRHFRH 536
                  GS  D   I   ++ GI ++ T +R F H
Sbjct: 358 QFIVAPSGSAADEVVIEACNELGITLIHTNLRLFHH 393


>d1g8ma1 c.24.1.3 (A:4-200) IMP cyclohydrolase domain of
           bifunctional purine biosynthesis enzyme ATIC {Chicken
           (Gallus gallus) [TaxId: 9031]}
          Length = 197

 Score =  170 bits (432), Expect = 2e-43
 Identities = 77/196 (39%), Positives = 113/196 (57%), Gaps = 3/196 (1%)

Query: 17  KTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGR 76
           + AL+SV  K G+VEFA  L + G+ +I++GGT   L + G+PV  V D+T FPE++GGR
Sbjct: 3   QLALLSVSEKAGLVEFARSLNALGLGLIASGGTATALRDAGLPVRDVSDLTGFPEMLGGR 62

Query: 77  VKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCRED-DYYTMVEN 135
           VKTLHP ++ GIL+      +    +      + +VV NLYPF ++           VE 
Sbjct: 63  VKTLHPAVHAGILARNIPEDNADMNKQDF-SLVRVVVCNLYPFVKTVSSPGVTVPEAVEK 121

Query: 136 IDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVN-NGKIPYNFRKKMARQAFSRTA 194
           IDIGG +++RAAAKNH  VT++ +P DY     EM  + +       R+ +A +AF+ TA
Sbjct: 122 IDIGGVALLRAAAKNHARVTVVCDPADYSSVAKEMAASKDKDTSVETRRHLALKAFTHTA 181

Query: 195 SYDTAICRWLANAESE 210
            YD AI  +     S+
Sbjct: 182 QYDAAISDYFRKEYSK 197


>d1zcza1 c.24.1.3 (A:1-157) IMP cyclohydrolase domain of
           bifunctional purine biosynthesis enzyme ATIC {Thermotoga
           maritima [TaxId: 2336]}
          Length = 157

 Score =  132 bits (333), Expect = 7e-32
 Identities = 54/191 (28%), Positives = 82/191 (42%), Gaps = 35/191 (18%)

Query: 16  VKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGG 75
           +K  L+S++ K   ++    L  +G +I ++ GT + L+  GI    V  IT F  ++GG
Sbjct: 1   MKRILVSLYEKEKYLDILRELHEKGWEIWASSGTAKFLKSNGIEANDVSTITGFENLLGG 60

Query: 76  RVKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVEN 135
            VKTLHP+I+ GIL                      V V+LYP                +
Sbjct: 61  LVKTLHPEIFAGILGPEPRWDV--------------VFVDLYPP--------------PD 92

Query: 136 IDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVNNGKIPYNFRKKMARQAFSRTAS 195
           IDIGG +++RAAAKN   V    + +   L +   D          RK +A   F+ T+ 
Sbjct: 93  IDIGGVALLRAAAKNWKKVKPAFDMETLKLAIEIDD-------EETRKYLAGMTFAFTSV 145

Query: 196 YDTAICRWLAN 206
           YD+        
Sbjct: 146 YDSIRANQFVE 156


>d1a9xa2 c.24.1.1 (A:936-1073) Carbamoyl phosphate synthetase,
          large subunit allosteric, C-terminal domain
          {Escherichia coli [TaxId: 562]}
          Length = 138

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 6/82 (7%)

Query: 18 TALISVHN--KTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGG 75
           AL+SV    K  VV+ A++LL +G ++ +T GT  +L E GI    V  + +    +  
Sbjct: 9  RALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQD 68

Query: 76 RVKTLHPKIY----GGILSIRD 93
          R+K            G  +I D
Sbjct: 69 RIKNGEYTYIINTTSGRRAIED 90


>d1b93a_ c.24.1.2 (A:) Methylglyoxal synthase, MgsA {Escherichia
          coli [TaxId: 562]}
          Length = 148

 Score = 33.8 bits (77), Expect = 0.039
 Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 4/54 (7%)

Query: 15 AVKTALISVHN--KTGVVEFASRL--LSRGIKIISTGGTCQLLEEEGIPVTSVF 64
          A K   +  H+  K  ++ +  R   L     + +TG T  L+        +  
Sbjct: 10 ARKHIALVAHDHCKQMLMSWVERHQPLLEQHVLYATGTTGNLISRATGMNVNAM 63


>d1vmda_ c.24.1.2 (A:) Methylglyoxal synthase, MgsA {Thermotoga
          maritima [TaxId: 2336]}
          Length = 156

 Score = 30.3 bits (68), Expect = 0.43
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 19 ALISV-HNKTGVVEFASRL--LSRGIKIISTGGTCQLLEEE-GIPVTSV 63
          ALI+    K  ++E+ S         ++ +TG T  LL+E+ G+ V  +
Sbjct: 15 ALIAHDRRKRDLLEWVSFNLGTLSKHELYATGTTGALLQEKLGLKVHRL 63


>d4ubpc1 b.92.1.1 (C:1-131,C:435-483) alpha-Subunit of urease
           {Bacillus pasteurii [TaxId: 1474]}
          Length = 180

 Score = 27.3 bits (61), Expect = 3.0
 Identities = 23/87 (26%), Positives = 27/87 (31%), Gaps = 29/87 (33%)

Query: 437 KDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQADVKS-MTNGS---VIASEA-------F 485
           KDG  VGIG               K  N      V   M  G+   VIA+E         
Sbjct: 90  KDGYIVGIG---------------KGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTALVL 134

Query: 486 YP---FPDGIVEAIKAGVTAVIQPGGS 509
           +    F       IK G+ A  Q G  
Sbjct: 135 WEPKFFGVKADRVIKGGIIAYAQIGDP 161


>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal,
          substrate-binding domain {Garden pea (Pisum sativum)
          [TaxId: 3888]}
          Length = 176

 Score = 26.8 bits (59), Expect = 4.3
 Identities = 6/22 (27%), Positives = 9/22 (40%)

Query: 51 QLLEEEGIPVTSVFDITKFPEI 72
           + E  G   T+ FDI     +
Sbjct: 20 DVAESNGFAQTAYFDIFYNRTL 41


>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory
           protein PrpR {Escherichia coli [TaxId: 562]}
          Length = 186

 Score = 26.6 bits (59), Expect = 5.5
 Identities = 22/147 (14%), Positives = 47/147 (31%), Gaps = 31/147 (21%)

Query: 21  ISVHNKT---GVVEFASRLLSRGIK-IISTGGTCQLLEEE-GIPV----TSVFDITKFPE 71
           I+         V     +L +     II+ G     L+    +PV     S +D+ +F  
Sbjct: 29  ITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQFLA 88

Query: 72  IMGGRVKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYT 131
               +   L   I  G+++ ++    +   Q     ++ L          S+  E+D   
Sbjct: 89  ----KAGKLTSSI--GVVTYQETIPALVAFQK--TFNLRLDQR-------SYITEEDARG 133

Query: 132 MVENID-------IGGPSMIRAAAKNH 151
            +  +        +G   +   A +  
Sbjct: 134 QINELKANGTEAVVGAGLITDLAEEAG 160


>d1e7ua3 d.15.1.5 (A:143-321) Phoshoinositide 3-kinase (PI3K) {Pig
           (Sus scrofa) [TaxId: 9823]}
          Length = 179

 Score = 26.3 bits (58), Expect = 6.3
 Identities = 7/36 (19%), Positives = 14/36 (38%)

Query: 181 FRKKMARQAFSRTASYDTAICRWLANAESENFPDYL 216
            R+++     +  A  D  +        S+  P+YL
Sbjct: 34  TRRRLVTPRMAEVAGRDPKLYAMHPWVTSKPLPEYL 69


>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc
           {Bacillus subtilis [TaxId: 1423]}
          Length = 158

 Score = 26.3 bits (58), Expect = 6.6
 Identities = 24/153 (15%), Positives = 43/153 (28%), Gaps = 40/153 (26%)

Query: 32  FASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSI 91
           F+ +++  G  I+ + G           V S            G++  + P         
Sbjct: 31  FSGKMMGDGFAILPSEGI----------VVSPVR---------GKILNVFPT-------- 63

Query: 92  RDNPAH-MKFMQDHELE-----SIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIR 145
                H +    D   E      ID V +    F  SF  E D     + +       ++
Sbjct: 64  ----KHAIGLQSDGGREILIHFGIDTVSLKGEGFT-SFVSEGDRVEPGQKLLEVDLDAVK 118

Query: 146 AAAKNHDYVTILTNPQDYP--LFLAEMDVNNGK 176
               +     + TN  +       A   VN  +
Sbjct: 119 PNVPSLMTPIVFTNLAEGETVSIKASGSVNREQ 151


>d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate
           isomerase (RpiA), catalytic domain {Thermus thermophilus
           [TaxId: 274]}
          Length = 151

 Score = 25.9 bits (56), Expect = 8.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 432 AVVYAKDGRTVGIGSGQTS 450
           A+ Y +DG  VG+G+G T+
Sbjct: 14  AIAYVQDGMVVGLGTGSTA 32


>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 70

 Score = 25.8 bits (57), Expect = 8.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 332 VAKEVIKVFTEAIIAPTLSEEAADVLA 358
           ++ E +KV  E+I   +LS++AA  LA
Sbjct: 7   ISAESMKVIAESIGVGSLSDDAAKELA 33


>d1eg1a_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
           Endoglucanase I, CBH1) {Trichoderma reesei,
           Endoglucanase I [TaxId: 51453]}
          Length = 371

 Score = 25.5 bits (56), Expect = 9.9
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 10/37 (27%)

Query: 165 LFLAEMDVNNGKIPYNFRKKMARQAFSRTASYDTAIC 201
           L+L++MD N G   YN          +  A+Y +  C
Sbjct: 145 LYLSQMDENGGANQYN----------TAGANYGSGYC 171


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0696    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,981,795
Number of extensions: 94437
Number of successful extensions: 352
Number of sequences better than 10.0: 1
Number of HSP's gapped: 342
Number of HSP's successfully gapped: 21
Length of query: 536
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 446
Effective length of database: 1,171,896
Effective search space: 522665616
Effective search space used: 522665616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.0 bits)