RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780664|ref|YP_003065077.1| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [Candidatus Liberibacter asiaticus str. psy62] (536 letters) >d1zcza2 c.97.1.4 (A:158-452) AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC {Thermotoga maritima [TaxId: 2336]} Length = 295 Score = 262 bits (670), Expect = 5e-71 Identities = 116/322 (36%), Positives = 173/322 (53%), Gaps = 28/322 (8%) Query: 216 LNITAVKKQ-EMRYGENPHQKAALYSTPEKKSGIAHAVLVQGKPLSYNNINDLDAAFELV 274 +++ ++ ++RYGENPH+KA +Y P A +L +GK +S+NNI D + A+ + Sbjct: 1 ISLAFKREDLQLRYGENPHEKAFVYGKP------AFEILHEGKTISFNNILDAENAWFMA 54 Query: 275 SEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAK 334 V+VKH +PCG A + VE ++A+ D S+FGGI+A N E+D+EVAK Sbjct: 55 KNL---PRMGAVVVKHQSPCGAAIGEDKVEIVKKAIEADDESSFGGILAVNFEMDEEVAK 111 Query: 335 EVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDFHGEEIVLKTVSGGILVQTRD 394 +K + E I+AP+ ++EA +VL+KK G+ + + Sbjct: 112 S-LKKYLEVIVAPSFTQEAIEVLSKKKVRLL--------KPGDYASWAGKMAFGSLVLSE 162 Query: 395 NVVDNKELTVVTKRSPTDQELRDMKFAFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDS 454 +V +++EL D++FA++VV+ KSNAV+ AKDG TVGIGSGQ SR + Sbjct: 163 RKYPEGNFELVVGEPLSEKELEDLEFAYRVVEGAKSNAVLIAKDGVTVGIGSGQPSRKRA 222 Query: 455 TRFAAIKAHNISAQADVKSMTNGSVIASEAFYPFPDGIVEAIKAGVTAVIQPGGSVRDSE 514 A + A G+V AS+AF+PFPD + +AGV AV+ P GS+RD E Sbjct: 223 AWIATVMA---------GEKAKGAVAASDAFFPFPDSLEILAQAGVKAVVAPLGSIRDEE 273 Query: 515 AITVADQHGIAMVFTGIRHFRH 536 I A + GI R FRH Sbjct: 274 VIEKARELGITFYKAPSRVFRH 295 >d1g8ma2 c.97.1.4 (A:201-593) AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC {Chicken (Gallus gallus) [TaxId: 9031]} Length = 393 Score = 232 bits (593), Expect = 4e-62 Identities = 98/396 (24%), Positives = 160/396 (40%), Gaps = 84/396 (21%) Query: 221 VKKQEMRYGENPHQKAALYSTPEKKSGIAHAVLVQGKPLSYNNINDLDAAFELVSEF-RS 279 V + +RYG NPHQ A T K + V + N+ D A++LV E ++ Sbjct: 2 VSQLPLRYGMNPHQSPAQLYTTRPKLPLT----VVNGSPGFINLCDALNAWQLVKELKQA 57 Query: 280 QDCAACVIVKHMNPCGVA--------------------TADTLVEAYRRALSCDPISAFG 319 A KH++P G A T L AY R+ D +S+FG Sbjct: 58 LGIPAAASFKHVSPAGAAVGIPLSEEEAQVCMVHDLHKTLTPLASAYARSRGADRMSSFG 117 Query: 320 GIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDFHGEEI 379 IA + D AK + + ++ ++AP EEA +L+KK + + ++ ++ Sbjct: 118 DFIALSDICDVPTAKIISREVSDGVVAPGYEEEALKILSKKKNGGYCVLQMDPNYEPDDN 177 Query: 380 VLKTVSGGILVQTRDNVVDNKE---LTVVTKRSPTDQELRDMKFAFKVVKHVKSNAVVYA 436 ++T+ G L+Q R+N V ++ V ++ + +RD+ A VK+ +SN+V YA Sbjct: 178 EIRTLYGLQLMQKRNNAVIDRSLFKNIVTKNKTLPESAVRDLIVASIAVKYTQSNSVCYA 237 Query: 437 KDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQADVKSM--------------------TN 476 KDG+ +GIG+GQ SR+ TR A KA++ + + + Sbjct: 238 KDGQVIGIGAGQQSRIHCTRLAGDKANSWWLRHHPRVLSMKFKAGVKRAEVSNAIDQYVT 297 Query: 477 GSVIASE-------AFYPFPDGIVEAIKA---------------------GVTAVIQPG- 507 G++ E F P + EA K V + G Sbjct: 298 GTIGEDEDLVKWQAMFEEVPAQLTEAEKKQWIAKLTAVSLSSDAFFPFRDNVDRAKRIGV 357 Query: 508 -------GSVRDSEAITVADQHGIAMVFTGIRHFRH 536 GS D I ++ GI ++ T +R F H Sbjct: 358 QFIVAPSGSAADEVVIEACNELGITLIHTNLRLFHH 393 >d1g8ma1 c.24.1.3 (A:4-200) IMP cyclohydrolase domain of bifunctional purine biosynthesis enzyme ATIC {Chicken (Gallus gallus) [TaxId: 9031]} Length = 197 Score = 170 bits (432), Expect = 2e-43 Identities = 77/196 (39%), Positives = 113/196 (57%), Gaps = 3/196 (1%) Query: 17 KTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGR 76 + AL+SV K G+VEFA L + G+ +I++GGT L + G+PV V D+T FPE++GGR Sbjct: 3 QLALLSVSEKAGLVEFARSLNALGLGLIASGGTATALRDAGLPVRDVSDLTGFPEMLGGR 62 Query: 77 VKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCRED-DYYTMVEN 135 VKTLHP ++ GIL+ + + + +VV NLYPF ++ VE Sbjct: 63 VKTLHPAVHAGILARNIPEDNADMNKQDF-SLVRVVVCNLYPFVKTVSSPGVTVPEAVEK 121 Query: 136 IDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVN-NGKIPYNFRKKMARQAFSRTA 194 IDIGG +++RAAAKNH VT++ +P DY EM + + R+ +A +AF+ TA Sbjct: 122 IDIGGVALLRAAAKNHARVTVVCDPADYSSVAKEMAASKDKDTSVETRRHLALKAFTHTA 181 Query: 195 SYDTAICRWLANAESE 210 YD AI + S+ Sbjct: 182 QYDAAISDYFRKEYSK 197 >d1zcza1 c.24.1.3 (A:1-157) IMP cyclohydrolase domain of bifunctional purine biosynthesis enzyme ATIC {Thermotoga maritima [TaxId: 2336]} Length = 157 Score = 132 bits (333), Expect = 7e-32 Identities = 54/191 (28%), Positives = 82/191 (42%), Gaps = 35/191 (18%) Query: 16 VKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGG 75 +K L+S++ K ++ L +G +I ++ GT + L+ GI V IT F ++GG Sbjct: 1 MKRILVSLYEKEKYLDILRELHEKGWEIWASSGTAKFLKSNGIEANDVSTITGFENLLGG 60 Query: 76 RVKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVEN 135 VKTLHP+I+ GIL V V+LYP + Sbjct: 61 LVKTLHPEIFAGILGPEPRWDV--------------VFVDLYPP--------------PD 92 Query: 136 IDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVNNGKIPYNFRKKMARQAFSRTAS 195 IDIGG +++RAAAKN V + + L + D RK +A F+ T+ Sbjct: 93 IDIGGVALLRAAAKNWKKVKPAFDMETLKLAIEIDD-------EETRKYLAGMTFAFTSV 145 Query: 196 YDTAICRWLAN 206 YD+ Sbjct: 146 YDSIRANQFVE 156 >d1a9xa2 c.24.1.1 (A:936-1073) Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 138 Score = 39.2 bits (91), Expect = 0.001 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 6/82 (7%) Query: 18 TALISVHN--KTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGG 75 AL+SV K VV+ A++LL +G ++ +T GT +L E GI V + + + Sbjct: 9 RALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQD 68 Query: 76 RVKTLHPKIY----GGILSIRD 93 R+K G +I D Sbjct: 69 RIKNGEYTYIINTTSGRRAIED 90 >d1b93a_ c.24.1.2 (A:) Methylglyoxal synthase, MgsA {Escherichia coli [TaxId: 562]} Length = 148 Score = 33.8 bits (77), Expect = 0.039 Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 4/54 (7%) Query: 15 AVKTALISVHN--KTGVVEFASRL--LSRGIKIISTGGTCQLLEEEGIPVTSVF 64 A K + H+ K ++ + R L + +TG T L+ + Sbjct: 10 ARKHIALVAHDHCKQMLMSWVERHQPLLEQHVLYATGTTGNLISRATGMNVNAM 63 >d1vmda_ c.24.1.2 (A:) Methylglyoxal synthase, MgsA {Thermotoga maritima [TaxId: 2336]} Length = 156 Score = 30.3 bits (68), Expect = 0.43 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%) Query: 19 ALISV-HNKTGVVEFASRL--LSRGIKIISTGGTCQLLEEE-GIPVTSV 63 ALI+ K ++E+ S ++ +TG T LL+E+ G+ V + Sbjct: 15 ALIAHDRRKRDLLEWVSFNLGTLSKHELYATGTTGALLQEKLGLKVHRL 63 >d4ubpc1 b.92.1.1 (C:1-131,C:435-483) alpha-Subunit of urease {Bacillus pasteurii [TaxId: 1474]} Length = 180 Score = 27.3 bits (61), Expect = 3.0 Identities = 23/87 (26%), Positives = 27/87 (31%), Gaps = 29/87 (33%) Query: 437 KDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQADVKS-MTNGS---VIASEA-------F 485 KDG VGIG K N V M G+ VIA+E Sbjct: 90 KDGYIVGIG---------------KGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTALVL 134 Query: 486 YP---FPDGIVEAIKAGVTAVIQPGGS 509 + F IK G+ A Q G Sbjct: 135 WEPKFFGVKADRVIKGGIIAYAQIGDP 161 >d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 176 Score = 26.8 bits (59), Expect = 4.3 Identities = 6/22 (27%), Positives = 9/22 (40%) Query: 51 QLLEEEGIPVTSVFDITKFPEI 72 + E G T+ FDI + Sbjct: 20 DVAESNGFAQTAYFDIFYNRTL 41 >d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory protein PrpR {Escherichia coli [TaxId: 562]} Length = 186 Score = 26.6 bits (59), Expect = 5.5 Identities = 22/147 (14%), Positives = 47/147 (31%), Gaps = 31/147 (21%) Query: 21 ISVHNKT---GVVEFASRLLSRGIK-IISTGGTCQLLEEE-GIPV----TSVFDITKFPE 71 I+ V +L + II+ G L+ +PV S +D+ +F Sbjct: 29 ITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQFLA 88 Query: 72 IMGGRVKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYT 131 + L I G+++ ++ + Q ++ L S+ E+D Sbjct: 89 ----KAGKLTSSI--GVVTYQETIPALVAFQK--TFNLRLDQR-------SYITEEDARG 133 Query: 132 MVENID-------IGGPSMIRAAAKNH 151 + + +G + A + Sbjct: 134 QINELKANGTEAVVGAGLITDLAEEAG 160 >d1e7ua3 d.15.1.5 (A:143-321) Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) [TaxId: 9823]} Length = 179 Score = 26.3 bits (58), Expect = 6.3 Identities = 7/36 (19%), Positives = 14/36 (38%) Query: 181 FRKKMARQAFSRTASYDTAICRWLANAESENFPDYL 216 R+++ + A D + S+ P+YL Sbjct: 34 TRRRLVTPRMAEVAGRDPKLYAMHPWVTSKPLPEYL 69 >d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]} Length = 158 Score = 26.3 bits (58), Expect = 6.6 Identities = 24/153 (15%), Positives = 43/153 (28%), Gaps = 40/153 (26%) Query: 32 FASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSI 91 F+ +++ G I+ + G V S G++ + P Sbjct: 31 FSGKMMGDGFAILPSEGI----------VVSPVR---------GKILNVFPT-------- 63 Query: 92 RDNPAH-MKFMQDHELE-----SIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIR 145 H + D E ID V + F SF E D + + ++ Sbjct: 64 ----KHAIGLQSDGGREILIHFGIDTVSLKGEGFT-SFVSEGDRVEPGQKLLEVDLDAVK 118 Query: 146 AAAKNHDYVTILTNPQDYP--LFLAEMDVNNGK 176 + + TN + A VN + Sbjct: 119 PNVPSLMTPIVFTNLAEGETVSIKASGSVNREQ 151 >d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Thermus thermophilus [TaxId: 274]} Length = 151 Score = 25.9 bits (56), Expect = 8.2 Identities = 9/19 (47%), Positives = 14/19 (73%) Query: 432 AVVYAKDGRTVGIGSGQTS 450 A+ Y +DG VG+G+G T+ Sbjct: 14 AIAYVQDGMVVGLGTGSTA 32 >d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 70 Score = 25.8 bits (57), Expect = 8.5 Identities = 11/27 (40%), Positives = 18/27 (66%) Query: 332 VAKEVIKVFTEAIIAPTLSEEAADVLA 358 ++ E +KV E+I +LS++AA LA Sbjct: 7 ISAESMKVIAESIGVGSLSDDAAKELA 33 >d1eg1a_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) {Trichoderma reesei, Endoglucanase I [TaxId: 51453]} Length = 371 Score = 25.5 bits (56), Expect = 9.9 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 10/37 (27%) Query: 165 LFLAEMDVNNGKIPYNFRKKMARQAFSRTASYDTAIC 201 L+L++MD N G YN + A+Y + C Sbjct: 145 LYLSQMDENGGANQYN----------TAGANYGSGYC 171 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.319 0.134 0.384 Gapped Lambda K H 0.267 0.0696 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,981,795 Number of extensions: 94437 Number of successful extensions: 352 Number of sequences better than 10.0: 1 Number of HSP's gapped: 342 Number of HSP's successfully gapped: 21 Length of query: 536 Length of database: 2,407,596 Length adjustment: 90 Effective length of query: 446 Effective length of database: 1,171,896 Effective search space: 522665616 Effective search space used: 522665616 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.0 bits)