HHsearch alignment for GI: 254780666 and conserved domain: COG0030
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis].
Probab=96.49 E-value=0.0024 Score=44.59 Aligned_cols=139 Identities=19% Similarity=0.156 Sum_probs=91.2
Q ss_pred CCCEECCCC-CCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 010134632-1232223563213310035564470000102568410001059679877654432048874177207744
Q gi|254780666|r 221 GVWWVQDAS-ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 (445)
Q Consensus 221 G~~~VQD~a-Sql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~ 299 (445)
T Consensus 9 GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaL 86 (259)
T COG0030 9 GQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDAL 86 (259)
T ss_pred CCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCEEEEEEECHHHHHHHHHHHC--CCCCEEEEECCHH
T ss_conf 64541478799999985578999869997898778899999606957999968899999997506--5665599947242
Q ss_pred CCCCCC--CCCEEEECCCCCCCCHHHCCCHHHHCCCHHHH-HHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 577434--47668961674211001101103332886677-8899999999999998608982899977478
Q gi|254780666|r 300 DYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI-VKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 (445)
Q Consensus 300 ~~~~~~--~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l-~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi 368 (445)
T Consensus 87 k~d~~~l~~~~~vVaNlPY~Isspii~----kll~~~~~~~~~v~M~QkEvaeRl---~A~pgsk~Yg~LsV 151 (259)
T COG0030 87 KFDFPSLAQPYKVVANLPYNISSPILF----KLLEEKFIIQDMVLMVQKEVAERL---VAKPGSKDYGRLSV 151 (259)
T ss_pred CCCCHHHCCCCEEEECCCCCCCHHHHH----HHHHCCCCCCEEEEEEHHHHHHHH---HCCCCCCCCCHHHH
T ss_conf 475135157888998089765679999----998466765428998299999997---17889865206655