HHsearch alignment for GI: 254780666 and conserved domain: COG0030

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis].
Probab=96.49  E-value=0.0024  Score=44.59  Aligned_cols=139  Identities=19%  Similarity=0.156  Sum_probs=91.2

Q ss_pred             CCCEECCCC-CCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf             010134632-1232223563213310035564470000102568410001059679877654432048874177207744
Q gi|254780666|r  221 GVWWVQDAS-ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF  299 (445)
Q Consensus       221 G~~~VQD~a-Sql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~  299 (445)
T Consensus         9 GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaL   86 (259)
T COG0030           9 GQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDAL   86 (259)
T ss_pred             CCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCEEEEEEECHHHHHHHHHHHC--CCCCEEEEECCHH
T ss_conf             64541478799999985578999869997898778899999606957999968899999997506--5665599947242


Q ss_pred             CCCCCC--CCCEEEECCCCCCCCHHHCCCHHHHCCCHHHH-HHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf             577434--47668961674211001101103332886677-8899999999999998608982899977478
Q gi|254780666|r  300 DYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI-VKSACFQRKLLLQGISFVKPGGIVVFSNCSL  368 (445)
Q Consensus       300 ~~~~~~--~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l-~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi  368 (445)
T Consensus        87 k~d~~~l~~~~~vVaNlPY~Isspii~----kll~~~~~~~~~v~M~QkEvaeRl---~A~pgsk~Yg~LsV  151 (259)
T COG0030          87 KFDFPSLAQPYKVVANLPYNISSPILF----KLLEEKFIIQDMVLMVQKEVAERL---VAKPGSKDYGRLSV  151 (259)
T ss_pred             CCCCHHHCCCCEEEECCCCCCCHHHHH----HHHHCCCCCCEEEEEEHHHHHHHH---HCCCCCCCCCHHHH
T ss_conf             475135157888998089765679999----998466765428998299999997---17889865206655